@jbrowse/core 1.4.4 → 1.5.3

package/util/io/rangeFetcher.js

@@ -1,236 +0,0 @@
-"use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.clearCache = clearCache;
-exports.openUrl = openUrl;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _httpRangeFetcher = require("http-range-fetcher");
-
-var _buffer = require("buffer");
-
-var _genericFilehandle = require("generic-filehandle");
-
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
-
-function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
-
-function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
-
-// function unReplacePath() {
-//   throw new Error('unimplemented') // TODO
-// }
-function getfetch(url) {
-  var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
-  return fetch(url, _objectSpread({
-    method: 'GET',
-    credentials: 'same-origin'
-  }, opts));
-}
-
-function fetchBinaryRange(_x, _x2, _x3) {
-  return _fetchBinaryRange.apply(this, arguments);
-}
-
-function _fetchBinaryRange() {
-  _fetchBinaryRange = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(url, start, end) {
-    var options,
-        requestDate,
-        requestHeaders,
-        res,
-        responseDate,
-        headers,
-        _iterator,
-        _step,
-        _step$value,
-        k,
-        v,
-        arrayBuffer,
-        _args = arguments;
-
-    return _regenerator.default.wrap(function _callee$(_context) {
-      while (1) {
-        switch (_context.prev = _context.next) {
-          case 0:
-            options = _args.length > 3 && _args[3] !== undefined ? _args[3] : {};
-            requestDate = new Date();
-            requestHeaders = _objectSpread(_objectSpread({}, options.headers), {}, {
-              range: "bytes=".concat(start, "-").concat(end)
-            });
-            _context.next = 5;
-            return getfetch(url, _objectSpread(_objectSpread({}, options), {}, {
-              headers: requestHeaders // onRetry: ({ retriesLeft }: { retriesLeft: number }) => {
-              //   console.warn(
-              //     `${url} bytes ${start}-${end} request failed, retrying (${retriesLeft} retries left)`,
-              //   )
-              // },
-
-            }));
-
-          case 5:
-            res = _context.sent;
-            responseDate = new Date();
-
-            if (!(res.status !== 206 && res.status !== 200)) {
-              _context.next = 9;
-              break;
-            }
-
-            throw new Error("HTTP ".concat(res.status, " when fetching ").concat(url, " bytes ").concat(start, "-").concat(end));
-
-          case 9:
-            // translate the Headers object into a regular key -> value object.
-            // will miss duplicate headers of course
-            // eslint-disable-next-line @typescript-eslint/no-explicit-any
-            headers = {};
-            _iterator = _createForOfIteratorHelper(res.headers.entries());
-
-            try {
-              for (_iterator.s(); !(_step = _iterator.n()).done;) {
-                _step$value = (0, _slicedToArray2.default)(_step.value, 2), k = _step$value[0], v = _step$value[1];
-                headers[k] = v;
-              }
-            } catch (err) {
-              _iterator.e(err);
-            } finally {
-              _iterator.f();
-            }
-
-            if (!(res.status === 200)) {
-              _context.next = 14;
-              break;
-            }
-
-            throw new Error("HTTP ".concat(res.status, " when fetching ").concat(url, " bytes ").concat(start, "-").concat(end));
-
-          case 14:
-            _context.next = 16;
-            return res.arrayBuffer();
-
-          case 16:
-            arrayBuffer = _context.sent;
-            return _context.abrupt("return", {
-              headers: headers,
-              requestDate: requestDate,
-              responseDate: responseDate,
-              buffer: _buffer.Buffer.from(arrayBuffer)
-            });
-
-          case 18:
-          case "end":
-            return _context.stop();
-        }
-      }
-    }, _callee);
-  }));
-  return _fetchBinaryRange.apply(this, arguments);
-}
-
-var globalRangeCache = new _httpRangeFetcher.HttpRangeFetcher({
-  fetch: fetchBinaryRange,
-  size: 500 * 1024 * 1024,
-  // 500MB
-  chunkSize: Math.pow(2, 17),
-  // 128KB
-  maxFetchSize: 100 * 1024 * 1024,
-  minimumTTL: 300000000
-});
-
-function globalCacheFetch(_x4, _x5) {
-  return _globalCacheFetch.apply(this, arguments);
-}
-
-function _globalCacheFetch() {
-  _globalCacheFetch = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(url, opts) {
-    var requestHeaders, range, _ref, _ref2, rangeParse, _rangeParse, start, end, s, e, response, headers;
-
-    return _regenerator.default.wrap(function _callee2$(_context2) {
-      while (1) {
-        switch (_context2.prev = _context2.next) {
-          case 0:
-            // if it is a range request, route it through the global range cache
-            requestHeaders = opts && opts.headers;
-
-            if (requestHeaders) {
-              if (requestHeaders instanceof Headers) {
-                range = requestHeaders.get('range');
-              } else if (Array.isArray(requestHeaders)) {
-                ;
-                _ref = requestHeaders.find(function (_ref3) {
-                  var _ref4 = (0, _slicedToArray2.default)(_ref3, 1),
-                      key = _ref4[0];
-
-                  return key === 'range';
-                }) || [undefined, undefined];
-                _ref2 = (0, _slicedToArray2.default)(_ref, 2);
-                range = _ref2[1];
-              } else {
-                range = requestHeaders.range;
-              }
-            }
-
-            if (!range) {
-              _context2.next = 13;
-              break;
-            }
-
-            rangeParse = /bytes=(\d+)-(\d+)/.exec(range);
-
-            if (!rangeParse) {
-              _context2.next = 13;
-              break;
-            }
-
-            _rangeParse = (0, _slicedToArray2.default)(rangeParse, 3), start = _rangeParse[1], end = _rangeParse[2];
-            s = parseInt(start, 10);
-            e = parseInt(end, 10);
-            _context2.next = 10;
-            return globalRangeCache.getRange(url, s, e - s + 1, {
-              signal: opts && opts.signal
-            });
-
-          case 10:
-            response = _context2.sent;
-            headers = response.headers;
-            return _context2.abrupt("return", new Response(response.buffer, {
-              status: 206,
-              headers: headers
-            }));
-
-          case 13:
-            return _context2.abrupt("return", getfetch(url, opts));
-
-          case 14:
-          case "end":
-            return _context2.stop();
-        }
-      }
-    }, _callee2);
-  }));
-  return _globalCacheFetch.apply(this, arguments);
-}
-
-function clearCache() {
-  globalRangeCache.reset();
-}
-
-function openUrl(url) {
-  return new _genericFilehandle.RemoteFile(String(url), {
-    fetch: globalCacheFetch
-  });
-}

package/value.d.ts

@@ -1 +0,0 @@
-export default function (): number;

package/value.js

@@ -1,10 +0,0 @@
-"use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = _default;
-
-function _default() {
-  return 43;
-}