@jbrowse/core 1.4.4 → 1.5.3

package/ReExports/modules.d.ts

@@ -8,25 +8,21 @@ import * as MUIStyles from '@material-ui/core/styles';
 import * as MUICore from '@material-ui/core';
 import * as MUIUtils from '@material-ui/core/utils';
 import * as MUILab from '@material-ui/lab';
-import * as MUIDataGrid from '@material-ui/data-grid';
+import * as MUIDataGrid from '@mui/x-data-grid';
 import * as BaseAdapterExports from '../data_adapters/BaseAdapter';
 import * as BaseFeatureDetail from '../BaseFeatureWidget/BaseFeatureDetail';
-import ViewType from '../pluggableElementTypes/ViewType';
-import AdapterType from '../pluggableElementTypes/AdapterType';
-import DisplayType from '../pluggableElementTypes/DisplayType';
-import TrackType from '../pluggableElementTypes/TrackType';
-import WidgetType from '../pluggableElementTypes/WidgetType';
+import * as pluggableElementTypes from '../pluggableElementTypes';
 import * as pluggableElementTypeModels from '../pluggableElementTypes/models';
 import * as ServerSideRendererType from '../pluggableElementTypes/renderers/ServerSideRendererType';
-import CircularChordRendererType from '../pluggableElementTypes/renderers/CircularChordRendererType';
 import * as BoxRendererType from '../pluggableElementTypes/renderers/BoxRendererType';
 import * as FeatureRendererType from '../pluggableElementTypes/renderers/FeatureRendererType';
 import * as RendererType from '../pluggableElementTypes/renderers/RendererType';
 import * as Configuration from '../configuration';
-import * as Plugin from '../Plugin';
+import Plugin from '../Plugin';
 import * as coreUi from '../ui';
 import * as coreUtil from '../util';
 import * as coreColor from '../util/color';
+import * as coreLayouts from '../util/layouts';
 import * as trackUtils from '../util/tracks';
 import * as coreIo from '../util/io';
 import * as coreMstReflection from '../util/mst-reflection';
@@ -44,6 +40,7 @@ declare const libs: {
     '@material-ui/core/SvgIcon': import("@material-ui/core/OverridableComponent").OverridableComponent<MUICore.SvgIconTypeMap<{}, "svg">>;
     '@material-ui/core/utils': typeof MUIUtils;
     '@material-ui/lab': typeof MUILab;
+    '@mui/x-data-grid': typeof MUIDataGrid;
     '@material-ui/data-grid': typeof MUIDataGrid;
     '@material-ui/core/colors': typeof MUIColors;
     '@material-ui/core/styles': typeof MUIStyles;
@@ -77,7 +74,7 @@ declare const libs: {
         alignItems?: "center" | "flex-start" | undefined;
         autoFocus?: boolean | undefined;
         button?: boolean | undefined;
-        ContainerComponent?: "object" | "summary" | "small" | "h1" | "h2" | "h3" | "h4" | "h5" | "h6" | "caption" | "abbr" | "address" | "article" | "aside" | "b" | "bdi" | "bdo" | "big" | "blockquote" | "cite" | "code" | "col" | "colgroup" | "dd" | "del" | "details" | "dfn" | "div" | "dt" | "em" | "embed" | "figcaption" | "figure" | "footer" | "head" | "header" | "hgroup" | "hr" | "i" | "iframe" | "img" | "input" | "kbd" | "keygen" | "legend" | "main" | "mark" | "menu" | "menuitem" | "meter" | "nav" | "noindex" | "noscript" | "output" | "p" | "picture" | "rp" | "rt" | "ruby" | "s" | "samp" | "section" | "span" | "strong" | "sub" | "sup" | "table" | "tbody" | "td" | "tfoot" | "th" | "thead" | "time" | "tr" | "u" | "var" | "wbr" | "webview" | React.ComponentClass<React.HTMLAttributes<HTMLDivElement>, any> | React.FunctionComponent<React.HTMLAttributes<HTMLDivElement>> | undefined;
+        ContainerComponent?: React.ElementType<React.HTMLAttributes<HTMLDivElement>> | undefined;
         ContainerProps?: React.HTMLAttributes<HTMLDivElement> | undefined;
         dense?: boolean | undefined;
         disabled?: boolean | undefined;
@@ -86,8 +83,8 @@ declare const libs: {
         focusVisibleClassName?: string | undefined;
         selected?: boolean | undefined;
     } & {
-        action?: ((instance: MUICore.ButtonBaseActions | null) => void) | React.RefObject<MUICore.ButtonBaseActions> | null | undefined;
-        buttonRef?: ((instance: unknown) => void) | React.RefObject<unknown> | null | undefined;
+        action?: React.Ref<MUICore.ButtonBaseActions> | undefined;
+        buttonRef?: React.Ref<unknown> | undefined;
         centerRipple?: boolean | undefined;
         children?: React.ReactNode;
         disabled?: boolean | undefined;
@@ -95,14 +92,14 @@ declare const libs: {
         disableTouchRipple?: boolean | undefined;
         focusRipple?: boolean | undefined;
         focusVisibleClassName?: string | undefined;
-        onFocusVisible?: ((event: React.FocusEvent<any>) => void) | undefined;
+        onFocusVisible?: React.FocusEventHandler<any> | undefined;
         tabIndex?: string | number | undefined;
         TouchRippleProps?: Partial<import("@material-ui/core/ButtonBase/TouchRipple").TouchRippleProps> | undefined;
     } & import("@material-ui/core/OverridableComponent").CommonProps<MUICore.ExtendButtonBaseTypeMap<MUICore.MenuItemTypeMap<{
         button?: true | undefined;
-    }, "li">>> & Pick<Pick<React.DetailedHTMLProps<React.AnchorHTMLAttributes<HTMLAnchorElement>, HTMLAnchorElement>, "id" | "type" | "defaultValue" | "key" | "prefix" | "slot" | "style" | "title" | "className" | "defaultChecked" | "suppressContentEditableWarning" | "suppressHydrationWarning" | "accessKey" | "contentEditable" | "contextMenu" | "dir" | "draggable" | "hidden" | "lang" | "placeholder" | "spellCheck" | "tabIndex" | "translate" | "radioGroup" | "role" | "about" | "datatype" | "inlist" | "property" | "resource" | "typeof" | "vocab" | "autoCapitalize" | "autoCorrect" | "autoSave" | "color" | "itemProp" | "itemScope" | "itemType" | "itemID" | "itemRef" | "results" | "security" | "unselectable" | "inputMode" | "is" | "aria-activedescendant" | "aria-atomic" | "aria-autocomplete" | "aria-busy" | "aria-checked" | "aria-colcount" | "aria-colindex" | "aria-colspan" | "aria-controls" | "aria-current" | "aria-describedby" | "aria-details" | "aria-disabled" | "aria-dropeffect" | "aria-errormessage" | "aria-expanded" | "aria-flowto" | "aria-grabbed" | "aria-haspopup" | "aria-hidden" | "aria-invalid" | "aria-keyshortcuts" | "aria-label" | "aria-labelledby" | "aria-level" | "aria-live" | "aria-modal" | "aria-multiline" | "aria-multiselectable" | "aria-orientation" | "aria-owns" | "aria-placeholder" | "aria-posinset" | "aria-pressed" | "aria-readonly" | "aria-relevant" | "aria-required" | "aria-roledescription" | "aria-rowcount" | "aria-rowindex" | "aria-rowspan" | "aria-selected" | "aria-setsize" | "aria-sort" | "aria-valuemax" | "aria-valuemin" | "aria-valuenow" | "aria-valuetext" | "children" | "dangerouslySetInnerHTML" | "onCopy" | "onCopyCapture" | "onCut" | "onCutCapture" | "onPaste" | "onPasteCapture" | "onCompositionEnd" | "onCompositionEndCapture" | "onCompositionStart" | "onCompositionStartCapture" | "onCompositionUpdate" | "onCompositionUpdateCapture" | "onFocus" | "onFocusCapture" | "onBlur" | "onBlurCapture" | "onChange" | "onChangeCapture" | "onBeforeInput" | "onBeforeInputCapture" | "onInput" | "onInputCapture" | "onReset" | "onResetCapture" | "onSubmit" | "onSubmitCapture" | "onInvalid" | "onInvalidCapture" | "onLoad" | "onLoadCapture" | "onError" | "onErrorCapture" | "onKeyDown" | "onKeyDownCapture" | "onKeyPress" | "onKeyPressCapture" | "onKeyUp" | "onKeyUpCapture" | "onAbort" | "onAbortCapture" | "onCanPlay" | "onCanPlayCapture" | "onCanPlayThrough" | "onCanPlayThroughCapture" | "onDurationChange" | "onDurationChangeCapture" | "onEmptied" | "onEmptiedCapture" | "onEncrypted" | "onEncryptedCapture" | "onEnded" | "onEndedCapture" | "onLoadedData" | "onLoadedDataCapture" | "onLoadedMetadata" | "onLoadedMetadataCapture" | "onLoadStart" | "onLoadStartCapture" | "onPause" | "onPauseCapture" | "onPlay" | "onPlayCapture" | "onPlaying" | "onPlayingCapture" | "onProgress" | "onProgressCapture" | "onRateChange" | "onRateChangeCapture" | "onSeeked" | "onSeekedCapture" | "onSeeking" | "onSeekingCapture" | "onStalled" | "onStalledCapture" | "onSuspend" | "onSuspendCapture" | "onTimeUpdate" | "onTimeUpdateCapture" | "onVolumeChange" | "onVolumeChangeCapture" | "onWaiting" | "onWaitingCapture" | "onAuxClick" | "onAuxClickCapture" | "onClick" | "onClickCapture" | "onContextMenu" | "onContextMenuCapture" | "onDoubleClick" | "onDoubleClickCapture" | "onDrag" | "onDragCapture" | "onDragEnd" | "onDragEndCapture" | "onDragEnter" | "onDragEnterCapture" | "onDragExit" | "onDragExitCapture" | "onDragLeave" | "onDragLeaveCapture" | "onDragOver" | "onDragOverCapture" | "onDragStart" | "onDragStartCapture" | "onDrop" | "onDropCapture" | "onMouseDown" | "onMouseDownCapture" | "onMouseEnter" | "onMouseLeave" | "onMouseMove" | "onMouseMoveCapture" | "onMouseOut" | "onMouseOutCapture" | "onMouseOver" | "onMouseOverCapture" | "onMouseUp" | "onMouseUpCapture" | "onSelect" | "onSelectCapture" | "onTouchCancel" | "onTouchCancelCapture" | "onTouchEnd" | "onTouchEndCapture" | "onTouchMove" | "onTouchMoveCapture" | "onTouchStart" | "onTouchStartCapture" | "onPointerDown" | "onPointerDownCapture" | "onPointerMove" | "onPointerMoveCapture" | "onPointerUp" | "onPointerUpCapture" | "onPointerCancel" | "onPointerCancelCapture" | "onPointerEnter" | "onPointerEnterCapture" | "onPointerLeave" | "onPointerLeaveCapture" | "onPointerOver" | "onPointerOverCapture" | "onPointerOut" | "onPointerOutCapture" | "onGotPointerCapture" | "onGotPointerCaptureCapture" | "onLostPointerCapture" | "onLostPointerCaptureCapture" | "onScroll" | "onScrollCapture" | "onWheel" | "onWheelCapture" | "onAnimationStart" | "onAnimationStartCapture" | "onAnimationEnd" | "onAnimationEndCapture" | "onAnimationIteration" | "onAnimationIterationCapture" | "onTransitionEnd" | "onTransitionEndCapture" | "href" | "download" | "hrefLang" | "media" | "ping" | "rel" | "target" | "referrerPolicy"> & {
+    }, "li">>> & Pick<Pick<React.DetailedHTMLProps<React.AnchorHTMLAttributes<HTMLAnchorElement>, HTMLAnchorElement>, "key" | keyof React.AnchorHTMLAttributes<HTMLAnchorElement>> & {
         ref?: ((instance: HTMLAnchorElement | null) => void) | React.RefObject<HTMLAnchorElement> | null | undefined;
-    }, "id" | "type" | "defaultValue" | "key" | "prefix" | "ref" | "slot" | "title" | "defaultChecked" | "suppressContentEditableWarning" | "suppressHydrationWarning" | "accessKey" | "contentEditable" | "contextMenu" | "dir" | "draggable" | "hidden" | "lang" | "placeholder" | "spellCheck" | "tabIndex" | "translate" | "radioGroup" | "role" | "about" | "datatype" | "inlist" | "property" | "resource" | "typeof" | "vocab" | "autoCapitalize" | "autoCorrect" | "autoSave" | "color" | "itemProp" | "itemScope" | "itemType" | "itemID" | "itemRef" | "results" | "security" | "unselectable" | "inputMode" | "is" | "aria-activedescendant" | "aria-atomic" | "aria-autocomplete" | "aria-busy" | "aria-checked" | "aria-colcount" | "aria-colindex" | "aria-colspan" | "aria-controls" | "aria-current" | "aria-describedby" | "aria-details" | "aria-disabled" | "aria-dropeffect" | "aria-errormessage" | "aria-expanded" | "aria-flowto" | "aria-grabbed" | "aria-haspopup" | "aria-hidden" | "aria-invalid" | "aria-keyshortcuts" | "aria-label" | "aria-labelledby" | "aria-level" | "aria-live" | "aria-modal" | "aria-multiline" | "aria-multiselectable" | "aria-orientation" | "aria-owns" | "aria-placeholder" | "aria-posinset" | "aria-pressed" | "aria-readonly" | "aria-relevant" | "aria-required" | "aria-roledescription" | "aria-rowcount" | "aria-rowindex" | "aria-rowspan" | "aria-selected" | "aria-setsize" | "aria-sort" | "aria-valuemax" | "aria-valuemin" | "aria-valuenow" | "aria-valuetext" | "children" | "dangerouslySetInnerHTML" | "onCopy" | "onCopyCapture" | "onCut" | "onCutCapture" | "onPaste" | "onPasteCapture" | "onCompositionEnd" | "onCompositionEndCapture" | "onCompositionStart" | "onCompositionStartCapture" | "onCompositionUpdate" | "onCompositionUpdateCapture" | "onFocus" | "onFocusCapture" | "onBlur" | "onBlurCapture" | "onChange" | "onChangeCapture" | "onBeforeInput" | "onBeforeInputCapture" | "onInput" | "onInputCapture" | "onReset" | "onResetCapture" | "onSubmit" | "onSubmitCapture" | "onInvalid" | "onInvalidCapture" | "onLoad" | "onLoadCapture" | "onError" | "onErrorCapture" | "onKeyDown" | "onKeyDownCapture" | "onKeyPress" | "onKeyPressCapture" | "onKeyUp" | "onKeyUpCapture" | "onAbort" | "onAbortCapture" | "onCanPlay" | "onCanPlayCapture" | "onCanPlayThrough" | "onCanPlayThroughCapture" | "onDurationChange" | "onDurationChangeCapture" | "onEmptied" | "onEmptiedCapture" | "onEncrypted" | "onEncryptedCapture" | "onEnded" | "onEndedCapture" | "onLoadedData" | "onLoadedDataCapture" | "onLoadedMetadata" | "onLoadedMetadataCapture" | "onLoadStart" | "onLoadStartCapture" | "onPause" | "onPauseCapture" | "onPlay" | "onPlayCapture" | "onPlaying" | "onPlayingCapture" | "onProgress" | "onProgressCapture" | "onRateChange" | "onRateChangeCapture" | "onSeeked" | "onSeekedCapture" | "onSeeking" | "onSeekingCapture" | "onStalled" | "onStalledCapture" | "onSuspend" | "onSuspendCapture" | "onTimeUpdate" | "onTimeUpdateCapture" | "onVolumeChange" | "onVolumeChangeCapture" | "onWaiting" | "onWaitingCapture" | "onAuxClick" | "onAuxClickCapture" | "onClick" | "onClickCapture" | "onContextMenu" | "onContextMenuCapture" | "onDoubleClick" | "onDoubleClickCapture" | "onDrag" | "onDragCapture" | "onDragEnd" | "onDragEndCapture" | "onDragEnter" | "onDragEnterCapture" | "onDragExit" | "onDragExitCapture" | "onDragLeave" | "onDragLeaveCapture" | "onDragOver" | "onDragOverCapture" | "onDragStart" | "onDragStartCapture" | "onDrop" | "onDropCapture" | "onMouseDown" | "onMouseDownCapture" | "onMouseEnter" | "onMouseLeave" | "onMouseMove" | "onMouseMoveCapture" | "onMouseOut" | "onMouseOutCapture" | "onMouseOver" | "onMouseOverCapture" | "onMouseUp" | "onMouseUpCapture" | "onSelect" | "onSelectCapture" | "onTouchCancel" | "onTouchCancelCapture" | "onTouchEnd" | "onTouchEndCapture" | "onTouchMove" | "onTouchMoveCapture" | "onTouchStart" | "onTouchStartCapture" | "onPointerDown" | "onPointerDownCapture" | "onPointerMove" | "onPointerMoveCapture" | "onPointerUp" | "onPointerUpCapture" | "onPointerCancel" | "onPointerCancelCapture" | "onPointerEnter" | "onPointerEnterCapture" | "onPointerLeave" | "onPointerLeaveCapture" | "onPointerOver" | "onPointerOverCapture" | "onPointerOut" | "onPointerOutCapture" | "onGotPointerCapture" | "onGotPointerCaptureCapture" | "onLostPointerCapture" | "onLostPointerCaptureCapture" | "onScroll" | "onScrollCapture" | "onWheel" | "onWheelCapture" | "onAnimationStart" | "onAnimationStartCapture" | "onAnimationEnd" | "onAnimationEndCapture" | "onAnimationIteration" | "onAnimationIterationCapture" | "onTransitionEnd" | "onTransitionEndCapture" | "href" | "download" | "hrefLang" | "media" | "ping" | "rel" | "target" | "referrerPolicy">) => JSX.Element) & import("@material-ui/core/OverridableComponent").OverridableComponent<MUICore.ExtendButtonBaseTypeMap<MUICore.MenuItemTypeMap<{
+    }, "id" | "is" | "color" | "type" | "defaultValue" | "key" | "prefix" | "defaultChecked" | "suppressContentEditableWarning" | "suppressHydrationWarning" | "accessKey" | "contentEditable" | "contextMenu" | "dir" | "draggable" | "hidden" | "lang" | "placeholder" | "slot" | "spellCheck" | "tabIndex" | "title" | "translate" | "radioGroup" | "role" | "about" | "datatype" | "inlist" | "property" | "resource" | "typeof" | "vocab" | "autoCapitalize" | "autoCorrect" | "autoSave" | "itemProp" | "itemScope" | "itemType" | "itemID" | "itemRef" | "results" | "security" | "unselectable" | "inputMode" | "aria-activedescendant" | "aria-atomic" | "aria-autocomplete" | "aria-busy" | "aria-checked" | "aria-colcount" | "aria-colindex" | "aria-colspan" | "aria-controls" | "aria-current" | "aria-describedby" | "aria-details" | "aria-disabled" | "aria-dropeffect" | "aria-errormessage" | "aria-expanded" | "aria-flowto" | "aria-grabbed" | "aria-haspopup" | "aria-hidden" | "aria-invalid" | "aria-keyshortcuts" | "aria-label" | "aria-labelledby" | "aria-level" | "aria-live" | "aria-modal" | "aria-multiline" | "aria-multiselectable" | "aria-orientation" | "aria-owns" | "aria-placeholder" | "aria-posinset" | "aria-pressed" | "aria-readonly" | "aria-relevant" | "aria-required" | "aria-roledescription" | "aria-rowcount" | "aria-rowindex" | "aria-rowspan" | "aria-selected" | "aria-setsize" | "aria-sort" | "aria-valuemax" | "aria-valuemin" | "aria-valuenow" | "aria-valuetext" | "children" | "dangerouslySetInnerHTML" | "onCopy" | "onCopyCapture" | "onCut" | "onCutCapture" | "onPaste" | "onPasteCapture" | "onCompositionEnd" | "onCompositionEndCapture" | "onCompositionStart" | "onCompositionStartCapture" | "onCompositionUpdate" | "onCompositionUpdateCapture" | "onFocus" | "onFocusCapture" | "onBlur" | "onBlurCapture" | "onChange" | "onChangeCapture" | "onBeforeInput" | "onBeforeInputCapture" | "onInput" | "onInputCapture" | "onReset" | "onResetCapture" | "onSubmit" | "onSubmitCapture" | "onInvalid" | "onInvalidCapture" | "onLoad" | "onLoadCapture" | "onError" | "onErrorCapture" | "onKeyDown" | "onKeyDownCapture" | "onKeyPress" | "onKeyPressCapture" | "onKeyUp" | "onKeyUpCapture" | "onAbort" | "onAbortCapture" | "onCanPlay" | "onCanPlayCapture" | "onCanPlayThrough" | "onCanPlayThroughCapture" | "onDurationChange" | "onDurationChangeCapture" | "onEmptied" | "onEmptiedCapture" | "onEncrypted" | "onEncryptedCapture" | "onEnded" | "onEndedCapture" | "onLoadedData" | "onLoadedDataCapture" | "onLoadedMetadata" | "onLoadedMetadataCapture" | "onLoadStart" | "onLoadStartCapture" | "onPause" | "onPauseCapture" | "onPlay" | "onPlayCapture" | "onPlaying" | "onPlayingCapture" | "onProgress" | "onProgressCapture" | "onRateChange" | "onRateChangeCapture" | "onSeeked" | "onSeekedCapture" | "onSeeking" | "onSeekingCapture" | "onStalled" | "onStalledCapture" | "onSuspend" | "onSuspendCapture" | "onTimeUpdate" | "onTimeUpdateCapture" | "onVolumeChange" | "onVolumeChangeCapture" | "onWaiting" | "onWaitingCapture" | "onAuxClick" | "onAuxClickCapture" | "onClick" | "onClickCapture" | "onContextMenu" | "onContextMenuCapture" | "onDoubleClick" | "onDoubleClickCapture" | "onDrag" | "onDragCapture" | "onDragEnd" | "onDragEndCapture" | "onDragEnter" | "onDragEnterCapture" | "onDragExit" | "onDragExitCapture" | "onDragLeave" | "onDragLeaveCapture" | "onDragOver" | "onDragOverCapture" | "onDragStart" | "onDragStartCapture" | "onDrop" | "onDropCapture" | "onMouseDown" | "onMouseDownCapture" | "onMouseEnter" | "onMouseLeave" | "onMouseMove" | "onMouseMoveCapture" | "onMouseOut" | "onMouseOutCapture" | "onMouseOver" | "onMouseOverCapture" | "onMouseUp" | "onMouseUpCapture" | "onSelect" | "onSelectCapture" | "onTouchCancel" | "onTouchCancelCapture" | "onTouchEnd" | "onTouchEndCapture" | "onTouchMove" | "onTouchMoveCapture" | "onTouchStart" | "onTouchStartCapture" | "onPointerDown" | "onPointerDownCapture" | "onPointerMove" | "onPointerMoveCapture" | "onPointerUp" | "onPointerUpCapture" | "onPointerCancel" | "onPointerCancelCapture" | "onPointerEnter" | "onPointerEnterCapture" | "onPointerLeave" | "onPointerLeaveCapture" | "onPointerOver" | "onPointerOverCapture" | "onPointerOut" | "onPointerOutCapture" | "onGotPointerCapture" | "onGotPointerCaptureCapture" | "onLostPointerCapture" | "onLostPointerCaptureCapture" | "onScroll" | "onScrollCapture" | "onWheel" | "onWheelCapture" | "onAnimationStart" | "onAnimationStartCapture" | "onAnimationEnd" | "onAnimationEndCapture" | "onAnimationIteration" | "onAnimationIterationCapture" | "onTransitionEnd" | "onTransitionEndCapture" | "ref" | "href" | "download" | "hrefLang" | "media" | "ping" | "rel" | "target" | "referrerPolicy">) => JSX.Element) & import("@material-ui/core/OverridableComponent").OverridableComponent<MUICore.ExtendButtonBaseTypeMap<MUICore.MenuItemTypeMap<{
         button?: true | undefined;
     }, "li">>>;
     '@material-ui/core/RadioGroup': typeof MUICore.RadioGroup;
@@ -116,14 +113,15 @@ declare const libs: {
     '@material-ui/lab/ToggleButton': MUICore.ExtendButtonBase<MUILab.ToggleButtonTypeMap<{}, "button">>;
     '@material-ui/lab/ToggleButtonGroup': typeof MUILab.ToggleButtonGroup;
     '@jbrowse/core/Plugin': typeof Plugin;
-    '@jbrowse/core/pluggableElementTypes/ViewType': typeof ViewType;
-    '@jbrowse/core/pluggableElementTypes/AdapterType': typeof AdapterType;
-    '@jbrowse/core/pluggableElementTypes/DisplayType': typeof DisplayType;
-    '@jbrowse/core/pluggableElementTypes/TrackType': typeof TrackType;
-    '@jbrowse/core/pluggableElementTypes/WidgetType': typeof WidgetType;
+    '@jbrowse/core/pluggableElementTypes': typeof pluggableElementTypes;
+    '@jbrowse/core/pluggableElementTypes/ViewType': typeof pluggableElementTypes.ViewType;
+    '@jbrowse/core/pluggableElementTypes/AdapterType': typeof pluggableElementTypes.AdapterType;
+    '@jbrowse/core/pluggableElementTypes/DisplayType': typeof pluggableElementTypes.DisplayType;
+    '@jbrowse/core/pluggableElementTypes/TrackType': typeof pluggableElementTypes.TrackType;
+    '@jbrowse/core/pluggableElementTypes/WidgetType': typeof pluggableElementTypes.WidgetType;
     '@jbrowse/core/pluggableElementTypes/models': typeof pluggableElementTypeModels;
     '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType': typeof ServerSideRendererType;
-    '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType': typeof CircularChordRendererType;
+    '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType': typeof pluggableElementTypes.CircularChordRendererType;
     '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType': typeof BoxRendererType;
     '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType': typeof FeatureRendererType;
     '@jbrowse/core/pluggableElementTypes/renderers/RendererType': typeof RendererType;
@@ -132,6 +130,7 @@ declare const libs: {
     '@jbrowse/core/ui': typeof coreUi;
     '@jbrowse/core/util': typeof coreUtil;
     '@jbrowse/core/util/color': typeof coreColor;
+    '@jbrowse/core/util/layouts': typeof coreLayouts;
     '@jbrowse/core/util/tracks': typeof trackUtils;
     '@jbrowse/core/util/Base1DViewModel': mst.IModelType<{
         displayedRegions: mst.IArrayType<mst.IModelType<{

package/ReExports/modules.js

@@ -31,7 +31,7 @@ var _SvgIcon = _interopRequireDefault(require("@material-ui/core/SvgIcon"));
 
 var MUILab = _interopRequireWildcard(require("@material-ui/lab"));
 
-var MUIDataGrid = _interopRequireWildcard(require("@material-ui/data-grid"));
+var MUIDataGrid = _interopRequireWildcard(require("@mui/x-data-grid"));
 
 var _Box = _interopRequireDefault(require("@material-ui/core/Box"));
 
@@ -101,6 +101,8 @@ var BaseFeatureDetail = _interopRequireWildcard(require("../BaseFeatureWidget/Ba
 
 var _Base1DViewModel = _interopRequireDefault(require("../util/Base1DViewModel"));
 
+var pluggableElementTypes = _interopRequireWildcard(require("../pluggableElementTypes"));
+
 var _ViewType = _interopRequireDefault(require("../pluggableElementTypes/ViewType"));
 
 var _AdapterType = _interopRequireDefault(require("../pluggableElementTypes/AdapterType"));
@@ -125,7 +127,7 @@ var RendererType = _interopRequireWildcard(require("../pluggableElementTypes/ren
 
 var Configuration = _interopRequireWildcard(require("../configuration"));
 
-var Plugin = _interopRequireWildcard(require("../Plugin"));
+var _Plugin = _interopRequireDefault(require("../Plugin"));
 
 var coreUi = _interopRequireWildcard(require("../ui"));
 
@@ -133,6 +135,8 @@ var coreUtil = _interopRequireWildcard(require("../util"));
 
 var coreColor = _interopRequireWildcard(require("../util/color"));
 
+var coreLayouts = _interopRequireWildcard(require("../util/layouts"));
+
 var trackUtils = _interopRequireWildcard(require("../util/tracks"));
 
 var coreIo = _interopRequireWildcard(require("../util/io"));
@@ -168,6 +172,7 @@ var libs = {
   '@material-ui/core/utils': MUIUtils,
   // end special case
   '@material-ui/lab': MUILab,
+  '@mui/x-data-grid': MUIDataGrid,
   '@material-ui/data-grid': MUIDataGrid,
   // material-ui subcomponents, should get rid of these
   '@material-ui/core/colors': MUIColors,
@@ -204,7 +209,8 @@ var libs = {
   // @material-ui lab
   '@material-ui/lab/ToggleButton': _ToggleButton.default,
   '@material-ui/lab/ToggleButtonGroup': _ToggleButtonGroup.default,
-  '@jbrowse/core/Plugin': Plugin,
+  '@jbrowse/core/Plugin': _Plugin.default,
+  '@jbrowse/core/pluggableElementTypes': pluggableElementTypes,
   '@jbrowse/core/pluggableElementTypes/ViewType': _ViewType.default,
   '@jbrowse/core/pluggableElementTypes/AdapterType': _AdapterType.default,
   '@jbrowse/core/pluggableElementTypes/DisplayType': _DisplayType.default,
@@ -221,6 +227,7 @@ var libs = {
   '@jbrowse/core/ui': coreUi,
   '@jbrowse/core/util': coreUtil,
   '@jbrowse/core/util/color': coreColor,
+  '@jbrowse/core/util/layouts': coreLayouts,
   '@jbrowse/core/util/tracks': trackUtils,
   '@jbrowse/core/util/Base1DViewModel': _Base1DViewModel.default,
   '@jbrowse/core/util/io': coreIo,

package/TextSearch/BaseResults.d.ts

@@ -1,10 +1,10 @@
-/// <reference types="react" />
+import React from 'react';
 import TextSearchAdapterType from '../pluggableElementTypes/TextSearchAdapterType';
 import { SearchType } from '../data_adapters/BaseAdapter';
 export interface BaseResultArgs {
     label: string;
     displayString?: string;
-    renderingComponent?: JSX.Element;
+    renderingComponent?: React.ReactElement;
     matchedAttribute?: string;
     matchedObject?: object;
     textSearchAdapter?: TextSearchAdapterType;
@@ -16,7 +16,7 @@ export interface BaseResultArgs {
 }
 export default class BaseResult {
     label: string;
-    renderingComponent?: JSX.Element;
+    renderingComponent?: React.ReactElement;
     displayString?: string;
     matchedAttribute?: string;
     matchedObject?: object;
@@ -24,24 +24,15 @@ export default class BaseResult {
     relevance?: SearchType;
     trackId?: string;
     score: number;
+    locString?: string;
     constructor(args: BaseResultArgs);
     getLabel(): string;
     getDisplayString(): string;
-    getLocation(): string;
-    getRenderingComponent(): JSX.Element | undefined;
+    getRenderingComponent(): React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
     getTrackId(): string | undefined;
     getScore(): number;
     updateScore(newScore: number): number;
     getId(): string;
-}
-/**
- * Future types of results
- * e.g: reference sequence results, track results,
- * feature results
- */
-export declare class LocStringResult extends BaseResult {
-    locString: string;
-    constructor(args: BaseResultArgs);
     getLocation(): string;
 }
 export declare class RefSequenceResult extends BaseResult {

package/TextSearch/BaseResults.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.RefSequenceResult = exports.LocStringResult = exports.default = void 0;
+exports.default = exports.RefSequenceResult = void 0;
 
 var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
 
@@ -37,7 +37,9 @@ var BaseResult = /*#__PURE__*/function () {
     (0, _defineProperty2.default)(this, "relevance", void 0);
     (0, _defineProperty2.default)(this, "trackId", void 0);
     (0, _defineProperty2.default)(this, "score", void 0);
+    (0, _defineProperty2.default)(this, "locString", void 0);
     this.label = args.label;
+    this.locString = args.locString;
     this.renderingComponent = args.renderingComponent;
     this.displayString = args.displayString;
     this.matchedAttribute = args.matchedAttribute;
@@ -58,11 +60,6 @@ var BaseResult = /*#__PURE__*/function () {
     value: function getDisplayString() {
       return this.displayString || this.label;
     }
-  }, {
-    key: "getLocation",
-    value: function getLocation() {
-      return this.label;
-    }
   }, {
     key: "getRenderingComponent",
     value: function getRenderingComponent() {
@@ -89,71 +86,32 @@ var BaseResult = /*#__PURE__*/function () {
     value: function getId() {
       return "".concat(this.getLabel(), "-").concat(this.getLocation(), "-").concat(this.getTrackId());
     }
-  }]);
-  return BaseResult;
-}();
-/**
- * Future types of results
- * e.g: reference sequence results, track results,
- * feature results
- */
-
-
-exports.default = BaseResult;
-
-var LocStringResult = /*#__PURE__*/function (_BaseResult) {
-  (0, _inherits2.default)(LocStringResult, _BaseResult);
-
-  var _super = _createSuper(LocStringResult);
-
-  function LocStringResult(args) {
-    var _args$locString;
-
-    var _this;
-
-    (0, _classCallCheck2.default)(this, LocStringResult);
-    _this = _super.call(this, args);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "locString", void 0);
-
-    if (!args.locString) {
-      throw new Error('must provide locString');
-    }
-
-    _this.locString = (_args$locString = args.locString) !== null && _args$locString !== void 0 ? _args$locString : '';
-    return _this;
-  }
-
-  (0, _createClass2.default)(LocStringResult, [{
+  }, {
     key: "getLocation",
     value: function getLocation() {
-      return this.locString;
+      return this.locString || this.label;
     }
   }]);
-  return LocStringResult;
-}(BaseResult);
+  return BaseResult;
+}();
 
-exports.LocStringResult = LocStringResult;
+exports.default = BaseResult;
 
-var RefSequenceResult = /*#__PURE__*/function (_BaseResult2) {
-  (0, _inherits2.default)(RefSequenceResult, _BaseResult2);
+var RefSequenceResult = /*#__PURE__*/function (_BaseResult) {
+  (0, _inherits2.default)(RefSequenceResult, _BaseResult);
 
-  var _super2 = _createSuper(RefSequenceResult);
+  var _super = _createSuper(RefSequenceResult);
 
   function RefSequenceResult(args) {
     var _args$refName;
 
-    var _this2;
+    var _this;
 
     (0, _classCallCheck2.default)(this, RefSequenceResult);
-    _this2 = _super2.call(this, args);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this2), "refName", void 0);
-
-    if (!args.refName) {
-      throw new Error('must provide refName');
-    }
-
-    _this2.refName = (_args$refName = args.refName) !== null && _args$refName !== void 0 ? _args$refName : '';
-    return _this2;
+    _this = _super.call(this, args);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "refName", void 0);
+    _this.refName = (_args$refName = args.refName) !== null && _args$refName !== void 0 ? _args$refName : '';
+    return _this;
   }
 
   (0, _createClass2.default)(RefSequenceResult, [{

package/TextSearch/BaseResults.test.js

@@ -16,7 +16,7 @@ test('create BaseResult', function () {
   expect(baseResult.getLocation()).toEqual('chr1');
 });
 test('create LocationResult', function () {
-  var locationResult = new _BaseResults.LocStringResult({
+  var locationResult = new _BaseResults.default({
     label: 'location result',
     locString: 'chr1:1-900'
   });
@@ -39,14 +39,4 @@ test('can update score of result and throw appropriate errors', function () {
   expect(refSeqResult.getScore()).toBe(1);
   refSeqResult.updateScore(1000);
   expect(refSeqResult.getScore()).toBe(1000);
-  expect(function () {
-    new _BaseResults.RefSequenceResult({
-      label: 'chromosome 1'
-    });
-  }).toThrow('must provide refName');
-  expect(function () {
-    new _BaseResults.LocStringResult({
-      label: 'chromosome 1'
-    });
-  }).toThrow('must provide locString');
 });

package/TextSearch/TextSearchManager.d.ts

@@ -4,8 +4,8 @@ import PluginManager from '../PluginManager';
 import QuickLRU from '../util/QuickLRU';
 import { SearchType, BaseTextSearchAdapter } from '../data_adapters/BaseAdapter';
 export interface BaseArgs {
-    searchType: SearchType;
     queryString: string;
+    searchType?: SearchType;
     signal?: AbortSignal;
     limit?: number;
     pageNumber?: number;
@@ -28,10 +28,10 @@ export default class TextSearchManager {
      * @param args - search options/arguments include: search query
      */
     relevantAdapters(searchScope: SearchScope): (import("mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-        setSubschema(slotName: string, data: import("mobx-state-tree").ModelPropertiesDeclaration | import("../configuration/configurationSchema").AnyConfigurationSchemaType): any;
+        setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<import("../configuration/configurationSchema").AnyConfigurationSchemaType>)[];
     getAdaptersWithAssembly(asmName: string, adapterConfs: AnyConfigurationModel[]): (import("mobx-state-tree").ModelInstanceTypeProps<Record<string, any>> & {
-        setSubschema(slotName: string, data: import("mobx-state-tree").ModelPropertiesDeclaration | import("../configuration/configurationSchema").AnyConfigurationSchemaType): any;
+        setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<import("../configuration/configurationSchema").AnyConfigurationSchemaType>)[];
     /**
      * Returns list of relevant results given a search query and options

package/TextSearch/TextSearchManager.js

@@ -53,7 +53,7 @@ var TextSearchManager = /*#__PURE__*/function () {
           var _this$pluginManager$g = _this.pluginManager.getTextSearchAdapterType(adapterConfig.type),
               AdapterClass = _this$pluginManager$g.AdapterClass;
 
-          var adapter = new AdapterClass(adapterConfig);
+          var adapter = new AdapterClass(adapterConfig, undefined, _this.pluginManager);
 
           _this.adapterCache.set(adapterId, adapter);
 

package/assemblyManager/assembly.d.ts

@@ -1,4 +1,5 @@
-import { IAnyType, Instance } from 'mobx-state-tree';
+import { Instance, IAnyType } from 'mobx-state-tree';
+import { Feature } from '../util/simpleFeature';
 import PluginManager from '../PluginManager';
 import { Region } from '../util/types';
 declare type RefNameAliases = Record<string, string>;
@@ -21,6 +22,7 @@ export default function assemblyFactory(assemblyConfigType: IAnyType, pluginMana
     refNameAliases: {
         [key: string]: string;
     } | undefined;
+    cytobands: Feature[] | undefined;
 } & {
     readonly initialized: boolean;
     readonly name: string;
@@ -37,27 +39,38 @@ export default function assemblyFactory(assemblyConfigType: IAnyType, pluginMana
     isValidRefName(refName: string): boolean;
 } & {
     setLoading(): void;
-    setLoaded({ adapterRegionsWithAssembly, refNameAliases, }: {
+    setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
         adapterRegionsWithAssembly: Region[];
         refNameAliases: RefNameAliases;
+        cytobands: Feature[];
     }): void;
-    setError(error: Error): void;
+    setError(e: Error): void;
     setRegions(regions: Region[]): void;
     setRefNameAliases(refNameAliases: RefNameAliases): void;
+    setCytobands(cytobands: Feature[]): void;
     afterAttach(): void;
 } & {
     getAdapterMapEntry(adapterConf: unknown, options: BaseOptions): Promise<{
-        forwardMap: Record<string, string>;
-        reverseMap: Record<string, string>;
+        forwardMap: {
+            [k: string]: string;
+        };
+        reverseMap: {
+            [k: string]: string;
+        };
     }>;
     /**
      * get Map of `canonical-name -> adapter-specific-name`
      */
-    getRefNameMapForAdapter(adapterConf: unknown, opts: BaseOptions): Promise<Record<string, string>>;
+    getRefNameMapForAdapter(adapterConf: unknown, opts: BaseOptions): Promise<{
+        [k: string]: string;
+    }>;
     /**
      * get Map of `adapter-specific-name -> canonical-name`
      */
-    getReverseRefNameMapForAdapter(adapterConf: unknown, opts: BaseOptions): Promise<Record<string, string>>;
+    getReverseRefNameMapForAdapter(adapterConf: unknown, opts: BaseOptions): Promise<{
+        [k: string]: string;
+    }>;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export declare type Assembly = Instance<ReturnType<typeof assemblyFactory>>;
+export declare type AssemblyModel = ReturnType<typeof assemblyFactory>;
+export declare type Assembly = Instance<AssemblyModel>;
 export {};