@jbrowse/bandage-core 11.8.0 → 11.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. package/dist/bubbles/bubbleHalos.js +6 -6
  2. package/dist/bubbles/classifyBubble.js +5 -5
  3. package/dist/bubbles/superbubbles.js +7 -7
  4. package/dist/chunks/{chunk-S4CH434Z.js → chunk-2A6Z2DHF.js} +1 -1
  5. package/dist/chunks/{chunk-6MD4VS2F.js → chunk-2MXFG3W7.js} +1 -1
  6. package/dist/chunks/{chunk-7GDNDQD7.js → chunk-3BDQQTXY.js} +163 -99
  7. package/dist/chunks/{chunk-MO4DIRHD.js → chunk-3BOREHCJ.js} +13 -13
  8. package/dist/chunks/{chunk-2RCKHCF7.js → chunk-3DHGSHC3.js} +1 -1
  9. package/dist/chunks/{chunk-3CXZUC2Y.js → chunk-3GORESBG.js} +1 -1
  10. package/dist/chunks/{chunk-R4XCTRIU.js → chunk-4BYGFDQB.js} +1 -1
  11. package/dist/chunks/{chunk-NHOXLUIL.js → chunk-4JDO7ZLN.js} +2 -2
  12. package/dist/chunks/{chunk-7PEYA3NA.js → chunk-7YSIP3O2.js} +2 -2
  13. package/dist/chunks/{chunk-3XYLEK4H.js → chunk-ARXDNQLF.js} +1 -1
  14. package/dist/chunks/{chunk-6CXLLJ2C.js → chunk-AURNOR27.js} +3 -3
  15. package/dist/chunks/{chunk-G4WQBRDS.js → chunk-BDS5VZYZ.js} +3 -3
  16. package/dist/chunks/{chunk-2H3ALI6L.js → chunk-GDZQFELP.js} +180 -159
  17. package/dist/chunks/{chunk-ZKIH2USC.js → chunk-GYJMPVOU.js} +1 -1
  18. package/dist/chunks/{chunk-X5ULFAMM.js → chunk-HEYIAMTC.js} +2 -2
  19. package/dist/chunks/{chunk-S7BCZVRK.js → chunk-HIN56TLA.js} +1 -1
  20. package/dist/chunks/{chunk-YIWN32ZX.js → chunk-HNNP5QUN.js} +1 -1
  21. package/dist/chunks/{chunk-XOIYBEU7.js → chunk-I53QYITQ.js} +1 -1
  22. package/dist/chunks/{chunk-R3NPBUKT.js → chunk-I5CHAYDZ.js} +7 -7
  23. package/dist/chunks/{chunk-LA6JHEVV.js → chunk-IXLT3JJX.js} +1 -1
  24. package/dist/chunks/{chunk-SDDMV2MM.js → chunk-IZKM4NY7.js} +1 -1
  25. package/dist/chunks/{chunk-SIXFXXRI.js → chunk-J7RNXBXA.js} +3 -3
  26. package/dist/chunks/{chunk-735MPLUL.js → chunk-JJV2GT2Z.js} +22 -14
  27. package/dist/chunks/{chunk-4OVIUCSB.js → chunk-JO2T77NW.js} +1 -1
  28. package/dist/chunks/{chunk-S3ICPPXC.js → chunk-JVT3XTKN.js} +3 -3
  29. package/dist/chunks/{chunk-J4PDHWP2.js → chunk-KKHXMJEE.js} +1 -1
  30. package/dist/chunks/{chunk-L2RQV23D.js → chunk-N3DCLT7M.js} +1 -1
  31. package/dist/chunks/{chunk-22ZMVREZ.js → chunk-NAYS472K.js} +1 -1
  32. package/dist/chunks/{chunk-OIOAK7BS.js → chunk-NWEVR2OQ.js} +1 -1
  33. package/dist/chunks/{chunk-VSRRIFRF.js → chunk-P2GJBFNA.js} +1 -1
  34. package/dist/chunks/{chunk-N2GAA7RB.js → chunk-RT4U3DH3.js} +1 -1
  35. package/dist/chunks/{chunk-AXE3RR7J.js → chunk-S6E3PMH7.js} +1 -1
  36. package/dist/chunks/{chunk-4YPCUVMC.js → chunk-SZYFZNCO.js} +2 -2
  37. package/dist/chunks/{chunk-U6JPSXJ3.js → chunk-T2UNTWU5.js} +9 -9
  38. package/dist/chunks/{chunk-G3GLGDKV.js → chunk-TQ26XEFL.js} +2 -2
  39. package/dist/chunks/{chunk-N4AJV4GH.js → chunk-UEWIGD52.js} +36 -10
  40. package/dist/chunks/{chunk-YEDZ37PH.js → chunk-VNCHWWLG.js} +1 -1
  41. package/dist/chunks/{chunk-JKIAHYAW.js → chunk-VQ353UDK.js} +1 -1
  42. package/dist/chunks/{chunk-NQWEYJDD.js → chunk-VTGQCLGI.js} +1 -1
  43. package/dist/chunks/{chunk-YF6T33PU.js → chunk-ZWBQ4RRK.js} +16 -10
  44. package/dist/cli/figure.js +28 -28
  45. package/dist/cli/fold.js +6 -6
  46. package/dist/deletionEdges.js +2 -2
  47. package/dist/figure.js +24 -24
  48. package/dist/figureData.js +22 -22
  49. package/dist/figureScene.js +15 -15
  50. package/dist/figureSettings.js +6 -6
  51. package/dist/foldVariants.js +2 -2
  52. package/dist/genes/genePins.js +3 -3
  53. package/dist/graphLabels.js +4 -4
  54. package/dist/index.js +38 -38
  55. package/dist/labelLayout.js +8 -8
  56. package/dist/layout/forceCache.js +6 -6
  57. package/dist/layout/mergeRuns.js +2 -2
  58. package/dist/layout/orientToReference.js +2 -2
  59. package/dist/layout/tubeMapLayout.js +7 -7
  60. package/dist/layout/walkRowDraw.js +9 -9
  61. package/dist/layout/walkStrip.js +10 -10
  62. package/dist/layoutModes.js +8 -8
  63. package/dist/pathColors.js +5 -5
  64. package/dist/pipeline.js +5 -5
  65. package/dist/referenceStrip.js +9 -9
  66. package/dist/renderer/GeometryBuilder.js +8 -8
  67. package/dist/renderer/walkLanes.js +4 -2
  68. package/dist/tubeMap/axis.js +5 -5
  69. package/dist/tubeMap/bundle.js +8 -8
  70. package/dist/tubeMap/coarsen.js +8 -8
  71. package/dist/tubeMap/deviations.js +9 -9
  72. package/dist/tubeMap/draw.js +3 -3
  73. package/dist/tubeMap/genes.js +6 -6
  74. package/dist/tubeMap/nodeColors.js +9 -9
  75. package/dist/tubeMap/reads.js +2 -2
  76. package/dist/types/renderer/walkLanes.d.ts +18 -2
  77. package/dist/types/util/geometry.d.ts +1 -1
  78. package/dist/types/version.d.ts +1 -1
  79. package/dist/types/walkEncoding.d.ts +4 -2
  80. package/dist/util/SpatialIndex.js +4 -4
  81. package/dist/util/edgeCurves.js +3 -3
  82. package/dist/util/geometry.js +1 -1
  83. package/dist/util/hitDetection.js +5 -5
  84. package/dist/version.js +1 -1
  85. package/dist/viewport.js +6 -6
  86. package/dist/walkEncoding.js +13 -11
  87. package/dist/walkHighlight.js +10 -10
  88. package/dist/walkKey.js +5 -5
  89. package/package.json +1 -1
package/dist/walkEncoding.js CHANGED
@@ -8,24 +8,25 @@ import {
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  resolveEncoding,
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  schemeColor,
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  schemeCss,
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- schemeRgb
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- } from "./chunks/chunk-N4AJV4GH.js";
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- import "./chunks/chunk-2H3ALI6L.js";
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- import "./chunks/chunk-7GDNDQD7.js";
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+ schemeRgb,
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+ splitFamilies
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+ } from "./chunks/chunk-UEWIGD52.js";
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+ import "./chunks/chunk-GDZQFELP.js";
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+ import "./chunks/chunk-3BDQQTXY.js";
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  import "./chunks/chunk-G2FD7S3C.js";
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  import "./chunks/chunk-GQZVR5DW.js";
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- import "./chunks/chunk-VSRRIFRF.js";
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- import "./chunks/chunk-JKIAHYAW.js";
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+ import "./chunks/chunk-P2GJBFNA.js";
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+ import "./chunks/chunk-VQ353UDK.js";
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  import "./chunks/chunk-ZANALBSX.js";
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  import "./chunks/chunk-VX656OAZ.js";
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- import "./chunks/chunk-6CXLLJ2C.js";
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+ import "./chunks/chunk-AURNOR27.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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  import "./chunks/chunk-BSOZW3FC.js";
@@ -42,5 +43,6 @@ export {
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  resolveEncoding,
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  schemeColor,
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  schemeCss,
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- schemeRgb
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+ schemeRgb,
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+ splitFamilies
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  };
package/dist/walkHighlight.js CHANGED
@@ -2,25 +2,25 @@ import {
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  facetLifts,
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  walkHighlight,
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  walkLift
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- } from "./chunks/chunk-YF6T33PU.js";
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- import "./chunks/chunk-N4AJV4GH.js";
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- import "./chunks/chunk-2H3ALI6L.js";
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- import "./chunks/chunk-7GDNDQD7.js";
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+ } from "./chunks/chunk-ZWBQ4RRK.js";
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+ import "./chunks/chunk-UEWIGD52.js";
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+ import "./chunks/chunk-GDZQFELP.js";
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+ import "./chunks/chunk-3BDQQTXY.js";
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  import "./chunks/chunk-G2FD7S3C.js";
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  import "./chunks/chunk-GQZVR5DW.js";
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- import "./chunks/chunk-VSRRIFRF.js";
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- import "./chunks/chunk-JKIAHYAW.js";
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+ import "./chunks/chunk-P2GJBFNA.js";
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+ import "./chunks/chunk-VQ353UDK.js";
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  import "./chunks/chunk-ZANALBSX.js";
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  import "./chunks/chunk-VX656OAZ.js";
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  import "./chunks/chunk-LG2UK4MB.js";
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- import "./chunks/chunk-6CXLLJ2C.js";
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+ import "./chunks/chunk-AURNOR27.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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  import "./chunks/chunk-BSOZW3FC.js";
package/dist/walkKey.js CHANGED
@@ -2,16 +2,16 @@ import {
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  rangeText,
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  walkKey,
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  walkPosition
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- } from "./chunks/chunk-SDDMV2MM.js";
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+ } from "./chunks/chunk-IZKM4NY7.js";
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  import "./chunks/chunk-LG2UK4MB.js";
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- import "./chunks/chunk-6CXLLJ2C.js";
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+ import "./chunks/chunk-AURNOR27.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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  import "./chunks/chunk-BSOZW3FC.js";
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/bandage-core",
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- "version": "11.8.0",
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+ "version": "11.9.0",
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  "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
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  "license": "GPL-3.0-or-later",
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  "repository": {