@jbrowse/bandage-core 11.8.0 → 11.9.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bubbles/bubbleHalos.js +6 -6
- package/dist/bubbles/classifyBubble.js +5 -5
- package/dist/bubbles/superbubbles.js +7 -7
- package/dist/chunks/{chunk-S4CH434Z.js → chunk-2A6Z2DHF.js} +1 -1
- package/dist/chunks/{chunk-6MD4VS2F.js → chunk-2MXFG3W7.js} +1 -1
- package/dist/chunks/{chunk-7GDNDQD7.js → chunk-3BDQQTXY.js} +163 -99
- package/dist/chunks/{chunk-MO4DIRHD.js → chunk-3BOREHCJ.js} +13 -13
- package/dist/chunks/{chunk-2RCKHCF7.js → chunk-3DHGSHC3.js} +1 -1
- package/dist/chunks/{chunk-3CXZUC2Y.js → chunk-3GORESBG.js} +1 -1
- package/dist/chunks/{chunk-R4XCTRIU.js → chunk-4BYGFDQB.js} +1 -1
- package/dist/chunks/{chunk-NHOXLUIL.js → chunk-4JDO7ZLN.js} +2 -2
- package/dist/chunks/{chunk-7PEYA3NA.js → chunk-7YSIP3O2.js} +2 -2
- package/dist/chunks/{chunk-3XYLEK4H.js → chunk-ARXDNQLF.js} +1 -1
- package/dist/chunks/{chunk-6CXLLJ2C.js → chunk-AURNOR27.js} +3 -3
- package/dist/chunks/{chunk-G4WQBRDS.js → chunk-BDS5VZYZ.js} +3 -3
- package/dist/chunks/{chunk-2H3ALI6L.js → chunk-GDZQFELP.js} +180 -159
- package/dist/chunks/{chunk-ZKIH2USC.js → chunk-GYJMPVOU.js} +1 -1
- package/dist/chunks/{chunk-X5ULFAMM.js → chunk-HEYIAMTC.js} +2 -2
- package/dist/chunks/{chunk-S7BCZVRK.js → chunk-HIN56TLA.js} +1 -1
- package/dist/chunks/{chunk-YIWN32ZX.js → chunk-HNNP5QUN.js} +1 -1
- package/dist/chunks/{chunk-XOIYBEU7.js → chunk-I53QYITQ.js} +1 -1
- package/dist/chunks/{chunk-R3NPBUKT.js → chunk-I5CHAYDZ.js} +7 -7
- package/dist/chunks/{chunk-LA6JHEVV.js → chunk-IXLT3JJX.js} +1 -1
- package/dist/chunks/{chunk-SDDMV2MM.js → chunk-IZKM4NY7.js} +1 -1
- package/dist/chunks/{chunk-SIXFXXRI.js → chunk-J7RNXBXA.js} +3 -3
- package/dist/chunks/{chunk-735MPLUL.js → chunk-JJV2GT2Z.js} +22 -14
- package/dist/chunks/{chunk-4OVIUCSB.js → chunk-JO2T77NW.js} +1 -1
- package/dist/chunks/{chunk-S3ICPPXC.js → chunk-JVT3XTKN.js} +3 -3
- package/dist/chunks/{chunk-J4PDHWP2.js → chunk-KKHXMJEE.js} +1 -1
- package/dist/chunks/{chunk-L2RQV23D.js → chunk-N3DCLT7M.js} +1 -1
- package/dist/chunks/{chunk-22ZMVREZ.js → chunk-NAYS472K.js} +1 -1
- package/dist/chunks/{chunk-OIOAK7BS.js → chunk-NWEVR2OQ.js} +1 -1
- package/dist/chunks/{chunk-VSRRIFRF.js → chunk-P2GJBFNA.js} +1 -1
- package/dist/chunks/{chunk-N2GAA7RB.js → chunk-RT4U3DH3.js} +1 -1
- package/dist/chunks/{chunk-AXE3RR7J.js → chunk-S6E3PMH7.js} +1 -1
- package/dist/chunks/{chunk-4YPCUVMC.js → chunk-SZYFZNCO.js} +2 -2
- package/dist/chunks/{chunk-U6JPSXJ3.js → chunk-T2UNTWU5.js} +9 -9
- package/dist/chunks/{chunk-G3GLGDKV.js → chunk-TQ26XEFL.js} +2 -2
- package/dist/chunks/{chunk-N4AJV4GH.js → chunk-UEWIGD52.js} +36 -10
- package/dist/chunks/{chunk-YEDZ37PH.js → chunk-VNCHWWLG.js} +1 -1
- package/dist/chunks/{chunk-JKIAHYAW.js → chunk-VQ353UDK.js} +1 -1
- package/dist/chunks/{chunk-NQWEYJDD.js → chunk-VTGQCLGI.js} +1 -1
- package/dist/chunks/{chunk-YF6T33PU.js → chunk-ZWBQ4RRK.js} +16 -10
- package/dist/cli/figure.js +28 -28
- package/dist/cli/fold.js +6 -6
- package/dist/deletionEdges.js +2 -2
- package/dist/figure.js +24 -24
- package/dist/figureData.js +22 -22
- package/dist/figureScene.js +15 -15
- package/dist/figureSettings.js +6 -6
- package/dist/foldVariants.js +2 -2
- package/dist/genes/genePins.js +3 -3
- package/dist/graphLabels.js +4 -4
- package/dist/index.js +38 -38
- package/dist/labelLayout.js +8 -8
- package/dist/layout/forceCache.js +6 -6
- package/dist/layout/mergeRuns.js +2 -2
- package/dist/layout/orientToReference.js +2 -2
- package/dist/layout/tubeMapLayout.js +7 -7
- package/dist/layout/walkRowDraw.js +9 -9
- package/dist/layout/walkStrip.js +10 -10
- package/dist/layoutModes.js +8 -8
- package/dist/pathColors.js +5 -5
- package/dist/pipeline.js +5 -5
- package/dist/referenceStrip.js +9 -9
- package/dist/renderer/GeometryBuilder.js +8 -8
- package/dist/renderer/walkLanes.js +4 -2
- package/dist/tubeMap/axis.js +5 -5
- package/dist/tubeMap/bundle.js +8 -8
- package/dist/tubeMap/coarsen.js +8 -8
- package/dist/tubeMap/deviations.js +9 -9
- package/dist/tubeMap/draw.js +3 -3
- package/dist/tubeMap/genes.js +6 -6
- package/dist/tubeMap/nodeColors.js +9 -9
- package/dist/tubeMap/reads.js +2 -2
- package/dist/types/renderer/walkLanes.d.ts +18 -2
- package/dist/types/util/geometry.d.ts +1 -1
- package/dist/types/version.d.ts +1 -1
- package/dist/types/walkEncoding.d.ts +4 -2
- package/dist/util/SpatialIndex.js +4 -4
- package/dist/util/edgeCurves.js +3 -3
- package/dist/util/geometry.js +1 -1
- package/dist/util/hitDetection.js +5 -5
- package/dist/version.js +1 -1
- package/dist/viewport.js +6 -6
- package/dist/walkEncoding.js +13 -11
- package/dist/walkHighlight.js +10 -10
- package/dist/walkKey.js +5 -5
- package/package.json +1 -1
package/dist/figureData.js
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|
contains,
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|
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|
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|
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|
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|
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|
+
} from "./chunks/chunk-3DHGSHC3.js";
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|
+
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} from "./chunks/chunk-
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|
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FIT_PADDING,
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|
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} from "./chunks/chunk-
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|
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|
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|
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|
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|
|
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|
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|
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|
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|
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LABEL_PX
|
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|
} from "./chunks/chunk-AB35TJST.js";
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345
|
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|
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|
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|
|
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|
|
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|
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|
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|
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|
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} from "./chunks/chunk-
|
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+
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|
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|
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|
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|
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|
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|
package/dist/labelLayout.js
CHANGED
|
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|
|
|
4
4
|
geneCoverageNote,
|
|
5
5
|
geneLabelCandidates,
|
|
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6
|
layoutLabels
|
|
7
|
-
} from "./chunks/chunk-
|
|
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|
-
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|
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|
-
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|
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|
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|
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import "./chunks/chunk-
|
|
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|
+
} from "./chunks/chunk-TQ26XEFL.js";
|
|
8
|
+
import "./chunks/chunk-4JDO7ZLN.js";
|
|
9
|
+
import "./chunks/chunk-7YSIP3O2.js";
|
|
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|
+
import "./chunks/chunk-P2GJBFNA.js";
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|
import "./chunks/chunk-HMXCN6PG.js";
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|
import "./chunks/chunk-AB35TJST.js";
|
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|
-
import "./chunks/chunk-
|
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|
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import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-HNNP5QUN.js";
|
|
15
|
+
import "./chunks/chunk-3GORESBG.js";
|
|
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16
|
import "./chunks/chunk-TLWXLNLY.js";
|
|
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|
import "./chunks/chunk-3YBP46PB.js";
|
|
18
|
-
import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-JJV2GT2Z.js";
|
|
19
19
|
import "./chunks/chunk-CPMHA4W5.js";
|
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20
|
import "./chunks/chunk-ZPZ7GNBT.js";
|
|
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21
|
import "./chunks/chunk-BSOZW3FC.js";
|
|
@@ -1,9 +1,9 @@
|
|
|
1
1
|
import {
|
|
2
2
|
createForceLayoutCache
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-2A6Z2DHF.js";
|
|
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|
+
import "../chunks/chunk-JVT3XTKN.js";
|
|
5
5
|
import "../chunks/chunk-OPPVSPEF.js";
|
|
6
|
-
import "../chunks/chunk-
|
|
6
|
+
import "../chunks/chunk-NAYS472K.js";
|
|
7
7
|
import "../chunks/chunk-CKUVEHSS.js";
|
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8
|
import "../chunks/chunk-VPE4AYP7.js";
|
|
9
9
|
import "../chunks/chunk-TUMJNAOL.js";
|
|
@@ -13,13 +13,13 @@ import "../chunks/chunk-7L7MN2OM.js";
|
|
|
13
13
|
import "../chunks/chunk-VX656OAZ.js";
|
|
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14
|
import "../chunks/chunk-VSSIYQYF.js";
|
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|
import "../chunks/chunk-LG2UK4MB.js";
|
|
16
|
-
import "../chunks/chunk-
|
|
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|
+
import "../chunks/chunk-HNNP5QUN.js";
|
|
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17
|
import "../chunks/chunk-HKYXWZQS.js";
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18
18
|
import "../chunks/chunk-34BOZKIE.js";
|
|
19
|
-
import "../chunks/chunk-
|
|
19
|
+
import "../chunks/chunk-3GORESBG.js";
|
|
20
20
|
import "../chunks/chunk-TLWXLNLY.js";
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21
21
|
import "../chunks/chunk-3YBP46PB.js";
|
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22
|
-
import "../chunks/chunk-
|
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22
|
+
import "../chunks/chunk-JJV2GT2Z.js";
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23
|
import "../chunks/chunk-CPMHA4W5.js";
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24
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import "../chunks/chunk-ZPZ7GNBT.js";
|
|
25
25
|
import "../chunks/chunk-BSOZW3FC.js";
|
package/dist/layout/mergeRuns.js
CHANGED
|
@@ -3,8 +3,8 @@ import {
|
|
|
3
3
|
polylineMidpoint,
|
|
4
4
|
polylineSlice,
|
|
5
5
|
splitRuns
|
|
6
|
-
} from "../chunks/chunk-
|
|
7
|
-
import "../chunks/chunk-
|
|
6
|
+
} from "../chunks/chunk-HNNP5QUN.js";
|
|
7
|
+
import "../chunks/chunk-JJV2GT2Z.js";
|
|
8
8
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
9
9
|
import "../chunks/chunk-BSOZW3FC.js";
|
|
10
10
|
import "../chunks/chunk-RJWPJCIB.js";
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import {
|
|
2
2
|
orientToReference
|
|
3
|
-
} from "../chunks/chunk-
|
|
4
|
-
import "../chunks/chunk-
|
|
3
|
+
} from "../chunks/chunk-NAYS472K.js";
|
|
4
|
+
import "../chunks/chunk-JJV2GT2Z.js";
|
|
5
5
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
6
6
|
import "../chunks/chunk-RJWPJCIB.js";
|
|
7
7
|
import "../chunks/chunk-HOAIOEI7.js";
|
|
@@ -5,22 +5,22 @@ import {
|
|
|
5
5
|
tubeMapLayout,
|
|
6
6
|
tubeMapReferenceLayout,
|
|
7
7
|
tubeMapTracks
|
|
8
|
-
} from "../chunks/chunk-
|
|
9
|
-
import "../chunks/chunk-
|
|
8
|
+
} from "../chunks/chunk-BDS5VZYZ.js";
|
|
9
|
+
import "../chunks/chunk-KKHXMJEE.js";
|
|
10
10
|
import "../chunks/chunk-5OJZV6YT.js";
|
|
11
11
|
import "../chunks/chunk-C3KAPREU.js";
|
|
12
12
|
import "../chunks/chunk-LODKC7PJ.js";
|
|
13
|
-
import "../chunks/chunk-
|
|
13
|
+
import "../chunks/chunk-VQ353UDK.js";
|
|
14
14
|
import "../chunks/chunk-7L7MN2OM.js";
|
|
15
15
|
import "../chunks/chunk-LG2UK4MB.js";
|
|
16
|
-
import "../chunks/chunk-
|
|
16
|
+
import "../chunks/chunk-AURNOR27.js";
|
|
17
17
|
import "../chunks/chunk-HMXCN6PG.js";
|
|
18
18
|
import "../chunks/chunk-AB35TJST.js";
|
|
19
|
-
import "../chunks/chunk-
|
|
20
|
-
import "../chunks/chunk-
|
|
19
|
+
import "../chunks/chunk-HNNP5QUN.js";
|
|
20
|
+
import "../chunks/chunk-3GORESBG.js";
|
|
21
21
|
import "../chunks/chunk-TLWXLNLY.js";
|
|
22
22
|
import "../chunks/chunk-3YBP46PB.js";
|
|
23
|
-
import "../chunks/chunk-
|
|
23
|
+
import "../chunks/chunk-JJV2GT2Z.js";
|
|
24
24
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
25
25
|
import "../chunks/chunk-ZPZ7GNBT.js";
|
|
26
26
|
import "../chunks/chunk-BSOZW3FC.js";
|
|
@@ -30,25 +30,25 @@ import {
|
|
|
30
30
|
walkRowsKey,
|
|
31
31
|
walkRowsKeyTree,
|
|
32
32
|
walkRowsTree
|
|
33
|
-
} from "../chunks/chunk-
|
|
33
|
+
} from "../chunks/chunk-IXLT3JJX.js";
|
|
34
34
|
import "../chunks/chunk-H2H4Y3TV.js";
|
|
35
|
-
import "../chunks/chunk-
|
|
36
|
-
import "../chunks/chunk-
|
|
35
|
+
import "../chunks/chunk-GDZQFELP.js";
|
|
36
|
+
import "../chunks/chunk-3BDQQTXY.js";
|
|
37
37
|
import "../chunks/chunk-G2FD7S3C.js";
|
|
38
38
|
import "../chunks/chunk-GQZVR5DW.js";
|
|
39
|
-
import "../chunks/chunk-
|
|
40
|
-
import "../chunks/chunk-
|
|
39
|
+
import "../chunks/chunk-P2GJBFNA.js";
|
|
40
|
+
import "../chunks/chunk-VQ353UDK.js";
|
|
41
41
|
import "../chunks/chunk-ZANALBSX.js";
|
|
42
42
|
import "../chunks/chunk-VX656OAZ.js";
|
|
43
43
|
import "../chunks/chunk-LG2UK4MB.js";
|
|
44
|
-
import "../chunks/chunk-
|
|
44
|
+
import "../chunks/chunk-AURNOR27.js";
|
|
45
45
|
import "../chunks/chunk-HMXCN6PG.js";
|
|
46
46
|
import "../chunks/chunk-AB35TJST.js";
|
|
47
|
-
import "../chunks/chunk-
|
|
48
|
-
import "../chunks/chunk-
|
|
47
|
+
import "../chunks/chunk-HNNP5QUN.js";
|
|
48
|
+
import "../chunks/chunk-3GORESBG.js";
|
|
49
49
|
import "../chunks/chunk-TLWXLNLY.js";
|
|
50
50
|
import "../chunks/chunk-3YBP46PB.js";
|
|
51
|
-
import "../chunks/chunk-
|
|
51
|
+
import "../chunks/chunk-JJV2GT2Z.js";
|
|
52
52
|
import "../chunks/chunk-CPMHA4W5.js";
|
|
53
53
|
import "../chunks/chunk-ZPZ7GNBT.js";
|
|
54
54
|
import "../chunks/chunk-BSOZW3FC.js";
|