@jbrowse/bandage-core 11.8.0 → 11.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (89) hide show
  1. package/dist/bubbles/bubbleHalos.js +6 -6
  2. package/dist/bubbles/classifyBubble.js +5 -5
  3. package/dist/bubbles/superbubbles.js +7 -7
  4. package/dist/chunks/{chunk-S4CH434Z.js → chunk-2A6Z2DHF.js} +1 -1
  5. package/dist/chunks/{chunk-6MD4VS2F.js → chunk-2MXFG3W7.js} +1 -1
  6. package/dist/chunks/{chunk-7GDNDQD7.js → chunk-3BDQQTXY.js} +163 -99
  7. package/dist/chunks/{chunk-MO4DIRHD.js → chunk-3BOREHCJ.js} +13 -13
  8. package/dist/chunks/{chunk-2RCKHCF7.js → chunk-3DHGSHC3.js} +1 -1
  9. package/dist/chunks/{chunk-3CXZUC2Y.js → chunk-3GORESBG.js} +1 -1
  10. package/dist/chunks/{chunk-R4XCTRIU.js → chunk-4BYGFDQB.js} +1 -1
  11. package/dist/chunks/{chunk-NHOXLUIL.js → chunk-4JDO7ZLN.js} +2 -2
  12. package/dist/chunks/{chunk-7PEYA3NA.js → chunk-7YSIP3O2.js} +2 -2
  13. package/dist/chunks/{chunk-3XYLEK4H.js → chunk-ARXDNQLF.js} +1 -1
  14. package/dist/chunks/{chunk-6CXLLJ2C.js → chunk-AURNOR27.js} +3 -3
  15. package/dist/chunks/{chunk-G4WQBRDS.js → chunk-BDS5VZYZ.js} +3 -3
  16. package/dist/chunks/{chunk-2H3ALI6L.js → chunk-GDZQFELP.js} +180 -159
  17. package/dist/chunks/{chunk-ZKIH2USC.js → chunk-GYJMPVOU.js} +1 -1
  18. package/dist/chunks/{chunk-X5ULFAMM.js → chunk-HEYIAMTC.js} +2 -2
  19. package/dist/chunks/{chunk-S7BCZVRK.js → chunk-HIN56TLA.js} +1 -1
  20. package/dist/chunks/{chunk-YIWN32ZX.js → chunk-HNNP5QUN.js} +1 -1
  21. package/dist/chunks/{chunk-XOIYBEU7.js → chunk-I53QYITQ.js} +1 -1
  22. package/dist/chunks/{chunk-R3NPBUKT.js → chunk-I5CHAYDZ.js} +7 -7
  23. package/dist/chunks/{chunk-LA6JHEVV.js → chunk-IXLT3JJX.js} +1 -1
  24. package/dist/chunks/{chunk-SDDMV2MM.js → chunk-IZKM4NY7.js} +1 -1
  25. package/dist/chunks/{chunk-SIXFXXRI.js → chunk-J7RNXBXA.js} +3 -3
  26. package/dist/chunks/{chunk-735MPLUL.js → chunk-JJV2GT2Z.js} +22 -14
  27. package/dist/chunks/{chunk-4OVIUCSB.js → chunk-JO2T77NW.js} +1 -1
  28. package/dist/chunks/{chunk-S3ICPPXC.js → chunk-JVT3XTKN.js} +3 -3
  29. package/dist/chunks/{chunk-J4PDHWP2.js → chunk-KKHXMJEE.js} +1 -1
  30. package/dist/chunks/{chunk-L2RQV23D.js → chunk-N3DCLT7M.js} +1 -1
  31. package/dist/chunks/{chunk-22ZMVREZ.js → chunk-NAYS472K.js} +1 -1
  32. package/dist/chunks/{chunk-OIOAK7BS.js → chunk-NWEVR2OQ.js} +1 -1
  33. package/dist/chunks/{chunk-VSRRIFRF.js → chunk-P2GJBFNA.js} +1 -1
  34. package/dist/chunks/{chunk-N2GAA7RB.js → chunk-RT4U3DH3.js} +1 -1
  35. package/dist/chunks/{chunk-AXE3RR7J.js → chunk-S6E3PMH7.js} +1 -1
  36. package/dist/chunks/{chunk-4YPCUVMC.js → chunk-SZYFZNCO.js} +2 -2
  37. package/dist/chunks/{chunk-U6JPSXJ3.js → chunk-T2UNTWU5.js} +9 -9
  38. package/dist/chunks/{chunk-G3GLGDKV.js → chunk-TQ26XEFL.js} +2 -2
  39. package/dist/chunks/{chunk-N4AJV4GH.js → chunk-UEWIGD52.js} +36 -10
  40. package/dist/chunks/{chunk-YEDZ37PH.js → chunk-VNCHWWLG.js} +1 -1
  41. package/dist/chunks/{chunk-JKIAHYAW.js → chunk-VQ353UDK.js} +1 -1
  42. package/dist/chunks/{chunk-NQWEYJDD.js → chunk-VTGQCLGI.js} +1 -1
  43. package/dist/chunks/{chunk-YF6T33PU.js → chunk-ZWBQ4RRK.js} +16 -10
  44. package/dist/cli/figure.js +28 -28
  45. package/dist/cli/fold.js +6 -6
  46. package/dist/deletionEdges.js +2 -2
  47. package/dist/figure.js +24 -24
  48. package/dist/figureData.js +22 -22
  49. package/dist/figureScene.js +15 -15
  50. package/dist/figureSettings.js +6 -6
  51. package/dist/foldVariants.js +2 -2
  52. package/dist/genes/genePins.js +3 -3
  53. package/dist/graphLabels.js +4 -4
  54. package/dist/index.js +38 -38
  55. package/dist/labelLayout.js +8 -8
  56. package/dist/layout/forceCache.js +6 -6
  57. package/dist/layout/mergeRuns.js +2 -2
  58. package/dist/layout/orientToReference.js +2 -2
  59. package/dist/layout/tubeMapLayout.js +7 -7
  60. package/dist/layout/walkRowDraw.js +9 -9
  61. package/dist/layout/walkStrip.js +10 -10
  62. package/dist/layoutModes.js +8 -8
  63. package/dist/pathColors.js +5 -5
  64. package/dist/pipeline.js +5 -5
  65. package/dist/referenceStrip.js +9 -9
  66. package/dist/renderer/GeometryBuilder.js +8 -8
  67. package/dist/renderer/walkLanes.js +4 -2
  68. package/dist/tubeMap/axis.js +5 -5
  69. package/dist/tubeMap/bundle.js +8 -8
  70. package/dist/tubeMap/coarsen.js +8 -8
  71. package/dist/tubeMap/deviations.js +9 -9
  72. package/dist/tubeMap/draw.js +3 -3
  73. package/dist/tubeMap/genes.js +6 -6
  74. package/dist/tubeMap/nodeColors.js +9 -9
  75. package/dist/tubeMap/reads.js +2 -2
  76. package/dist/types/renderer/walkLanes.d.ts +18 -2
  77. package/dist/types/util/geometry.d.ts +1 -1
  78. package/dist/types/version.d.ts +1 -1
  79. package/dist/types/walkEncoding.d.ts +4 -2
  80. package/dist/util/SpatialIndex.js +4 -4
  81. package/dist/util/edgeCurves.js +3 -3
  82. package/dist/util/geometry.js +1 -1
  83. package/dist/util/hitDetection.js +5 -5
  84. package/dist/version.js +1 -1
  85. package/dist/viewport.js +6 -6
  86. package/dist/walkEncoding.js +13 -11
  87. package/dist/walkHighlight.js +10 -10
  88. package/dist/walkKey.js +5 -5
  89. package/package.json +1 -1
package/dist/layout/walkStrip.js CHANGED
@@ -9,32 +9,32 @@ import {
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  walkStripApplies,
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  walkStripFrame,
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  walkStripLabelsTree
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- } from "../chunks/chunk-4OVIUCSB.js";
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+ } from "../chunks/chunk-JO2T77NW.js";
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  import {
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  LABELLED_ROW_PX
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- } from "../chunks/chunk-LA6JHEVV.js";
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+ } from "../chunks/chunk-IXLT3JJX.js";
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  import "../chunks/chunk-H2H4Y3TV.js";
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- import "../chunks/chunk-2H3ALI6L.js";
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- import "../chunks/chunk-7GDNDQD7.js";
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+ import "../chunks/chunk-GDZQFELP.js";
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+ import "../chunks/chunk-3BDQQTXY.js";
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  import "../chunks/chunk-G2FD7S3C.js";
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  import "../chunks/chunk-GQZVR5DW.js";
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- import "../chunks/chunk-VSRRIFRF.js";
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+ import "../chunks/chunk-P2GJBFNA.js";
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  import "../chunks/chunk-VCUOYVLC.js";
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  import "../chunks/chunk-C3KAPREU.js";
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  import "../chunks/chunk-LODKC7PJ.js";
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- import "../chunks/chunk-JKIAHYAW.js";
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+ import "../chunks/chunk-VQ353UDK.js";
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  import "../chunks/chunk-ZANALBSX.js";
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  import "../chunks/chunk-7L7MN2OM.js";
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  import "../chunks/chunk-VX656OAZ.js";
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  import "../chunks/chunk-LG2UK4MB.js";
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- import "../chunks/chunk-6CXLLJ2C.js";
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+ import "../chunks/chunk-AURNOR27.js";
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  import "../chunks/chunk-HMXCN6PG.js";
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  import "../chunks/chunk-AB35TJST.js";
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- import "../chunks/chunk-YIWN32ZX.js";
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- import "../chunks/chunk-3CXZUC2Y.js";
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+ import "../chunks/chunk-HNNP5QUN.js";
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+ import "../chunks/chunk-3GORESBG.js";
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  import "../chunks/chunk-TLWXLNLY.js";
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  import "../chunks/chunk-3YBP46PB.js";
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- import "../chunks/chunk-735MPLUL.js";
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+ import "../chunks/chunk-JJV2GT2Z.js";
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  import "../chunks/chunk-CPMHA4W5.js";
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  import "../chunks/chunk-ZPZ7GNBT.js";
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  import "../chunks/chunk-BSOZW3FC.js";
package/dist/layoutModes.js CHANGED
@@ -4,9 +4,9 @@ import {
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  LAYOUT_MODE_VALUES,
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  layoutModeByValue,
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  modeUsesLayoutEngine
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- } from "./chunks/chunk-3XYLEK4H.js";
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- import "./chunks/chunk-G4WQBRDS.js";
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- import "./chunks/chunk-J4PDHWP2.js";
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+ } from "./chunks/chunk-ARXDNQLF.js";
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+ import "./chunks/chunk-BDS5VZYZ.js";
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+ import "./chunks/chunk-KKHXMJEE.js";
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  import "./chunks/chunk-XR2HMGAS.js";
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  import "./chunks/chunk-GJLZ2MKE.js";
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  import "./chunks/chunk-MYLAJDKB.js";
@@ -16,18 +16,18 @@ import "./chunks/chunk-3GLG3ZLE.js";
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  import "./chunks/chunk-VCUOYVLC.js";
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  import "./chunks/chunk-C3KAPREU.js";
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  import "./chunks/chunk-LODKC7PJ.js";
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- import "./chunks/chunk-JKIAHYAW.js";
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+ import "./chunks/chunk-VQ353UDK.js";
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  import "./chunks/chunk-7L7MN2OM.js";
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  import "./chunks/chunk-VX656OAZ.js";
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  import "./chunks/chunk-LG2UK4MB.js";
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- import "./chunks/chunk-6CXLLJ2C.js";
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+ import "./chunks/chunk-AURNOR27.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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  import "./chunks/chunk-BSOZW3FC.js";
package/dist/pathColors.js CHANGED
@@ -9,15 +9,15 @@ import {
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  pathHueAt,
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  pathLegend,
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  walkLabelsOf
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- } from "./chunks/chunk-JKIAHYAW.js";
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- import "./chunks/chunk-6CXLLJ2C.js";
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+ } from "./chunks/chunk-VQ353UDK.js";
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+ import "./chunks/chunk-AURNOR27.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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  import "./chunks/chunk-ZPZ7GNBT.js";
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  import "./chunks/chunk-BSOZW3FC.js";
package/dist/pipeline.js CHANGED
@@ -11,9 +11,9 @@ import {
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  forceLayout,
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  layoutExtent,
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  loadGraph
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- } from "./chunks/chunk-S3ICPPXC.js";
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+ } from "./chunks/chunk-JVT3XTKN.js";
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  import "./chunks/chunk-OPPVSPEF.js";
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- import "./chunks/chunk-22ZMVREZ.js";
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+ import "./chunks/chunk-NAYS472K.js";
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  import "./chunks/chunk-CKUVEHSS.js";
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  import "./chunks/chunk-VPE4AYP7.js";
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  import "./chunks/chunk-TUMJNAOL.js";
@@ -23,13 +23,13 @@ import "./chunks/chunk-7L7MN2OM.js";
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  import "./chunks/chunk-VX656OAZ.js";
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  import "./chunks/chunk-VSSIYQYF.js";
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  import "./chunks/chunk-LG2UK4MB.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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  import "./chunks/chunk-HKYXWZQS.js";
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  import "./chunks/chunk-34BOZKIE.js";
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- import "./chunks/chunk-3CXZUC2Y.js";
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+ import "./chunks/chunk-3GORESBG.js";
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  import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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  import "./chunks/chunk-CPMHA4W5.js";
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package/dist/referenceStrip.js CHANGED
@@ -7,23 +7,23 @@ import {
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  stripBlockAt,
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  stripOverhang,
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  stripPixels
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- } from "./chunks/chunk-NQWEYJDD.js";
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- import "./chunks/chunk-2H3ALI6L.js";
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- import "./chunks/chunk-7GDNDQD7.js";
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+ } from "./chunks/chunk-VTGQCLGI.js";
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+ import "./chunks/chunk-GDZQFELP.js";
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+ import "./chunks/chunk-3BDQQTXY.js";
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  import "./chunks/chunk-G2FD7S3C.js";
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  import "./chunks/chunk-GQZVR5DW.js";
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- import "./chunks/chunk-VSRRIFRF.js";
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- import "./chunks/chunk-JKIAHYAW.js";
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+ import "./chunks/chunk-P2GJBFNA.js";
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+ import "./chunks/chunk-VQ353UDK.js";
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  import "./chunks/chunk-ZANALBSX.js";
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  import "./chunks/chunk-VX656OAZ.js";
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- import "./chunks/chunk-6CXLLJ2C.js";
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+ import "./chunks/chunk-AURNOR27.js";
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- import "./chunks/chunk-YIWN32ZX.js";
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+ import "./chunks/chunk-HNNP5QUN.js";
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+ import "./chunks/chunk-3GORESBG.js";
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- import "./chunks/chunk-735MPLUL.js";
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+ import "./chunks/chunk-JJV2GT2Z.js";
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package/dist/renderer/GeometryBuilder.js CHANGED
@@ -11,24 +11,24 @@ import {
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  hslToRgb,
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  rampFraction
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- } from "../chunks/chunk-2H3ALI6L.js";
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- import "../chunks/chunk-7GDNDQD7.js";
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+ } from "../chunks/chunk-GDZQFELP.js";
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+ import "../chunks/chunk-3BDQQTXY.js";
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- import "../chunks/chunk-VSRRIFRF.js";
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- import "../chunks/chunk-JKIAHYAW.js";
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+ import "../chunks/chunk-P2GJBFNA.js";
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+ import "../chunks/chunk-VQ353UDK.js";
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- import "../chunks/chunk-6CXLLJ2C.js";
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+ import "../chunks/chunk-AURNOR27.js";
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- import "../chunks/chunk-YIWN32ZX.js";
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- import "../chunks/chunk-3CXZUC2Y.js";
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+ import "../chunks/chunk-HNNP5QUN.js";
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+ import "../chunks/chunk-3GORESBG.js";
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+ import "../chunks/chunk-JJV2GT2Z.js";
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package/dist/renderer/walkLanes.js CHANGED
@@ -14,12 +14,13 @@ import {
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+ liftLanes,
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- } from "../chunks/chunk-7GDNDQD7.js";
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- import "../chunks/chunk-735MPLUL.js";
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+ } from "../chunks/chunk-3BDQQTXY.js";
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+ import "../chunks/chunk-JJV2GT2Z.js";
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package/dist/tubeMap/axis.js CHANGED
@@ -7,15 +7,15 @@ import {
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- } from "../chunks/chunk-XOIYBEU7.js";
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- import "../chunks/chunk-6CXLLJ2C.js";
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+ } from "../chunks/chunk-I53QYITQ.js";
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+ import "../chunks/chunk-AURNOR27.js";
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+ import "../chunks/chunk-HNNP5QUN.js";
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+ import "../chunks/chunk-3GORESBG.js";
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package/dist/tubeMap/bundle.js CHANGED
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- import "../chunks/chunk-G4WQBRDS.js";
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- import "../chunks/chunk-J4PDHWP2.js";
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+ } from "../chunks/chunk-S6E3PMH7.js";
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+ import "../chunks/chunk-BDS5VZYZ.js";
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+ import "../chunks/chunk-KKHXMJEE.js";
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+ import "../chunks/chunk-3GORESBG.js";
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  import "../chunks/chunk-TLWXLNLY.js";
18
18
  import "../chunks/chunk-3YBP46PB.js";
19
- import "../chunks/chunk-735MPLUL.js";
19
+ import "../chunks/chunk-JJV2GT2Z.js";
20
20
  import "../chunks/chunk-CPMHA4W5.js";
21
21
  import "../chunks/chunk-ZPZ7GNBT.js";
22
22
  import "../chunks/chunk-BSOZW3FC.js";
package/dist/tubeMap/coarsen.js CHANGED
@@ -1,23 +1,23 @@
1
1
  import {
2
2
  coarsenTubeMap,
3
3
  lastAtMost
4
- } from "../chunks/chunk-YEDZ37PH.js";
5
- import "../chunks/chunk-G4WQBRDS.js";
6
- import "../chunks/chunk-J4PDHWP2.js";
4
+ } from "../chunks/chunk-VNCHWWLG.js";
5
+ import "../chunks/chunk-BDS5VZYZ.js";
6
+ import "../chunks/chunk-KKHXMJEE.js";
7
7
  import "../chunks/chunk-5OJZV6YT.js";
8
8
  import "../chunks/chunk-C3KAPREU.js";
9
9
  import "../chunks/chunk-LODKC7PJ.js";
10
- import "../chunks/chunk-JKIAHYAW.js";
10
+ import "../chunks/chunk-VQ353UDK.js";
11
11
  import "../chunks/chunk-7L7MN2OM.js";
12
12
  import "../chunks/chunk-LG2UK4MB.js";
13
- import "../chunks/chunk-6CXLLJ2C.js";
13
+ import "../chunks/chunk-AURNOR27.js";
14
14
  import "../chunks/chunk-HMXCN6PG.js";
15
15
  import "../chunks/chunk-AB35TJST.js";
16
- import "../chunks/chunk-YIWN32ZX.js";
17
- import "../chunks/chunk-3CXZUC2Y.js";
16
+ import "../chunks/chunk-HNNP5QUN.js";
17
+ import "../chunks/chunk-3GORESBG.js";
18
18
  import "../chunks/chunk-TLWXLNLY.js";
19
19
  import "../chunks/chunk-3YBP46PB.js";
20
- import "../chunks/chunk-735MPLUL.js";
20
+ import "../chunks/chunk-JJV2GT2Z.js";
21
21
  import "../chunks/chunk-CPMHA4W5.js";
22
22
  import "../chunks/chunk-ZPZ7GNBT.js";
23
23
  import "../chunks/chunk-BSOZW3FC.js";
package/dist/tubeMap/deviations.js CHANGED
@@ -1,28 +1,28 @@
1
1
  import {
2
2
  lastAtMost
3
- } from "../chunks/chunk-YEDZ37PH.js";
3
+ } from "../chunks/chunk-VNCHWWLG.js";
4
4
  import {
5
5
  boxX,
6
6
  referenceBoxes
7
- } from "../chunks/chunk-XOIYBEU7.js";
8
- import "../chunks/chunk-G4WQBRDS.js";
9
- import "../chunks/chunk-J4PDHWP2.js";
7
+ } from "../chunks/chunk-I53QYITQ.js";
8
+ import "../chunks/chunk-BDS5VZYZ.js";
9
+ import "../chunks/chunk-KKHXMJEE.js";
10
10
  import "../chunks/chunk-5OJZV6YT.js";
11
11
  import "../chunks/chunk-C3KAPREU.js";
12
12
  import "../chunks/chunk-LODKC7PJ.js";
13
- import "../chunks/chunk-JKIAHYAW.js";
13
+ import "../chunks/chunk-VQ353UDK.js";
14
14
  import "../chunks/chunk-7L7MN2OM.js";
15
15
  import "../chunks/chunk-LG2UK4MB.js";
16
- import "../chunks/chunk-6CXLLJ2C.js";
16
+ import "../chunks/chunk-AURNOR27.js";
17
17
  import "../chunks/chunk-HMXCN6PG.js";
18
18
  import "../chunks/chunk-AB35TJST.js";
19
- import "../chunks/chunk-YIWN32ZX.js";
20
- import "../chunks/chunk-3CXZUC2Y.js";
19
+ import "../chunks/chunk-HNNP5QUN.js";
20
+ import "../chunks/chunk-3GORESBG.js";
21
21
  import "../chunks/chunk-TLWXLNLY.js";
22
22
  import {
23
23
  pathOrigin
24
24
  } from "../chunks/chunk-3YBP46PB.js";
25
- import "../chunks/chunk-735MPLUL.js";
25
+ import "../chunks/chunk-JJV2GT2Z.js";
26
26
  import "../chunks/chunk-CPMHA4W5.js";
27
27
  import "../chunks/chunk-ZPZ7GNBT.js";
28
28
  import {
package/dist/tubeMap/draw.js CHANGED
@@ -8,17 +8,17 @@ import {
8
8
  tubeMapMismatchAt,
9
9
  tubeMapPicture,
10
10
  tubeMapTrackAt
11
- } from "../chunks/chunk-S7BCZVRK.js";
11
+ } from "../chunks/chunk-HIN56TLA.js";
12
12
  import "../chunks/chunk-BX4AUMZE.js";
13
13
  import "../chunks/chunk-MYDHU2UV.js";
14
- import "../chunks/chunk-J4PDHWP2.js";
14
+ import "../chunks/chunk-KKHXMJEE.js";
15
15
  import "../chunks/chunk-5OJZV6YT.js";
16
16
  import "../chunks/chunk-C3KAPREU.js";
17
17
  import "../chunks/chunk-LODKC7PJ.js";
18
18
  import "../chunks/chunk-7L7MN2OM.js";
19
19
  import "../chunks/chunk-LG2UK4MB.js";
20
20
  import "../chunks/chunk-3YBP46PB.js";
21
- import "../chunks/chunk-735MPLUL.js";
21
+ import "../chunks/chunk-JJV2GT2Z.js";
22
22
  import "../chunks/chunk-CPMHA4W5.js";
23
23
  import "../chunks/chunk-ZPZ7GNBT.js";
24
24
  import "../chunks/chunk-BSOZW3FC.js";
package/dist/tubeMap/genes.js CHANGED
@@ -3,16 +3,16 @@ import {
3
3
  drawTubeMapGenes,
4
4
  tubeMapGeneRows,
5
5
  tubeMapGenes
6
- } from "../chunks/chunk-N2GAA7RB.js";
7
- import "../chunks/chunk-XOIYBEU7.js";
8
- import "../chunks/chunk-6CXLLJ2C.js";
6
+ } from "../chunks/chunk-RT4U3DH3.js";
7
+ import "../chunks/chunk-I53QYITQ.js";
8
+ import "../chunks/chunk-AURNOR27.js";
9
9
  import "../chunks/chunk-HMXCN6PG.js";
10
10
  import "../chunks/chunk-AB35TJST.js";
11
- import "../chunks/chunk-YIWN32ZX.js";
12
- import "../chunks/chunk-3CXZUC2Y.js";
11
+ import "../chunks/chunk-HNNP5QUN.js";
12
+ import "../chunks/chunk-3GORESBG.js";
13
13
  import "../chunks/chunk-TLWXLNLY.js";
14
14
  import "../chunks/chunk-3YBP46PB.js";
15
- import "../chunks/chunk-735MPLUL.js";
15
+ import "../chunks/chunk-JJV2GT2Z.js";
16
16
  import "../chunks/chunk-CPMHA4W5.js";
17
17
  import "../chunks/chunk-ZPZ7GNBT.js";
18
18
  import "../chunks/chunk-BSOZW3FC.js";
package/dist/tubeMap/nodeColors.js CHANGED
@@ -1,22 +1,22 @@
1
1
  import {
2
2
  tubeMapNodeColors
3
- } from "../chunks/chunk-ZKIH2USC.js";
4
- import "../chunks/chunk-2H3ALI6L.js";
5
- import "../chunks/chunk-7GDNDQD7.js";
3
+ } from "../chunks/chunk-GYJMPVOU.js";
4
+ import "../chunks/chunk-GDZQFELP.js";
5
+ import "../chunks/chunk-3BDQQTXY.js";
6
6
  import "../chunks/chunk-G2FD7S3C.js";
7
7
  import "../chunks/chunk-GQZVR5DW.js";
8
- import "../chunks/chunk-VSRRIFRF.js";
9
- import "../chunks/chunk-JKIAHYAW.js";
8
+ import "../chunks/chunk-P2GJBFNA.js";
9
+ import "../chunks/chunk-VQ353UDK.js";
10
10
  import "../chunks/chunk-ZANALBSX.js";
11
11
  import "../chunks/chunk-VX656OAZ.js";
12
- import "../chunks/chunk-6CXLLJ2C.js";
12
+ import "../chunks/chunk-AURNOR27.js";
13
13
  import "../chunks/chunk-HMXCN6PG.js";
14
14
  import "../chunks/chunk-AB35TJST.js";
15
- import "../chunks/chunk-YIWN32ZX.js";
16
- import "../chunks/chunk-3CXZUC2Y.js";
15
+ import "../chunks/chunk-HNNP5QUN.js";
16
+ import "../chunks/chunk-3GORESBG.js";
17
17
  import "../chunks/chunk-TLWXLNLY.js";
18
18
  import "../chunks/chunk-3YBP46PB.js";
19
- import "../chunks/chunk-735MPLUL.js";
19
+ import "../chunks/chunk-JJV2GT2Z.js";
20
20
  import "../chunks/chunk-CPMHA4W5.js";
21
21
  import "../chunks/chunk-ZPZ7GNBT.js";
22
22
  import "../chunks/chunk-BSOZW3FC.js";
package/dist/tubeMap/reads.js CHANGED
@@ -4,9 +4,9 @@ import {
4
4
  readColor,
5
5
  stepName,
6
6
  tubeMapReads
7
- } from "../chunks/chunk-J4PDHWP2.js";
7
+ } from "../chunks/chunk-KKHXMJEE.js";
8
8
  import "../chunks/chunk-5OJZV6YT.js";
9
- import "../chunks/chunk-735MPLUL.js";
9
+ import "../chunks/chunk-JJV2GT2Z.js";
10
10
  import "../chunks/chunk-CPMHA4W5.js";
11
11
  export {
12
12
  FORWARD_READ_COLORS,
package/dist/types/renderer/walkLanes.d.ts CHANGED
@@ -1,5 +1,6 @@
1
1
  import type { LaneSlide } from './types.js';
2
2
  import type { NodeSegment } from '../types.js';
3
+ import type { LiftedWalk } from '../walkHighlight.js';
3
4
  export declare const THREAD_PX = 2;
4
5
  export declare const THREAD_GAP_PX = 1.5;
5
6
  export declare const SLOT_GAP_PX = 4;
@@ -46,8 +47,8 @@ export declare function laneLines(lanes: LaneRuns, nodePositions: Record<string,
46
47
  };
47
48
  export interface WalkThreads {
48
49
  span: ReadonlyMap<string, number>;
49
- nodeThreads: Map<string, number[]>;
50
- linkThreads: Map<string, [number, number][]>;
50
+ nodeThreads: Map<string, readonly number[]>;
51
+ linkThreads: Map<string, Map<string, [number, number][]>>;
51
52
  }
52
53
  export declare function walkThreads(route: readonly (readonly string[])[], passes: ReadonlyMap<string, number>, nodePositions: Record<string, NodeSegment[]>, yToX: number, reach: number): WalkThreads;
53
54
  export declare function bandSpans(lanes: LaneRuns, spans: readonly ReadonlyMap<string, number>[], { reach, taper }: {
@@ -57,4 +58,19 @@ export declare function bandSpans(lanes: LaneRuns, spans: readonly ReadonlyMap<s
57
58
  slot: number[];
58
59
  held: number[];
59
60
  }>;
61
+ export declare function liftLanes(walks: readonly LiftedWalk[], nodePositions: Record<string, NodeSegment[]>, yToX: number, worldPerScreenPx: number): {
62
+ lines: {
63
+ normals: Map<string, (Normal | undefined)[]>;
64
+ shifts: Map<string, (Shift | undefined)[]>;
65
+ };
66
+ threads: WalkThreads[] | undefined;
67
+ spans: Map<string, {
68
+ slot: number[];
69
+ held: number[];
70
+ }> | undefined;
71
+ furthestShift: {
72
+ dx: number;
73
+ dy: number;
74
+ };
75
+ };
60
76
  export {};
package/dist/types/util/geometry.d.ts CHANGED
@@ -43,7 +43,7 @@ export interface Slide {
43
43
  dy: number;
44
44
  }
45
45
  export declare const slideAt: (from: Slide, to: Slide, along: number) => Slide;
46
- export declare function slideCurves(curves: BezierCurve[], from: Slide, to: Slide): BezierCurve[];
46
+ export declare function slideCurves(curves: BezierCurve[], fromDx: number, fromDy: number, toDx: number, toDy: number): BezierCurve[];
47
47
  export declare function translateCurves(curves: BezierCurve[], dx: number, dy: number): BezierCurve[];
48
48
  type Side = 'start' | 'end';
49
49
  export interface EdgeSides {
package/dist/types/version.d.ts CHANGED
@@ -1 +1 @@
1
- export declare const version = "11.8.0";
1
+ export declare const version = "11.9.0";
package/dist/types/walkEncoding.d.ts CHANGED
@@ -39,18 +39,20 @@ export interface WalkEncoding {
39
39
  scheme: WalkScheme;
40
40
  darkest?: number;
41
41
  shade?: number;
42
+ stretch?: readonly [number, number];
42
43
  }
43
44
  export interface WalkLayer {
44
45
  walk: string;
45
46
  color?: Partial<WalkEncoding>;
46
47
  }
47
48
  export declare function resolveEncoding(layer: WalkLayer, reference: boolean, picked: number, alone?: boolean): WalkEncoding;
49
+ export declare function splitFamilies(encodings: readonly WalkEncoding[]): WalkEncoding[];
48
50
  export declare function schemeRgb(scheme: WalkScheme, t: number, darkest?: number): number[];
49
51
  export declare function schemeCss(scheme: WalkScheme, t: number, darkest?: number): string;
50
52
  export declare function schemeColor(scheme: WalkScheme, t: number, darkest?: number): number;
51
- export declare function encodedColor({ field, scheme, darkest, shade }: WalkEncoding, t?: number): number;
53
+ export declare function encodedColor(encoding: WalkEncoding, t?: number): number;
52
54
  export declare const NO_VALUE_COLOR: number;
53
- export declare function encodingStops({ field, scheme, darkest, shade, }: WalkEncoding): {
55
+ export declare function encodingStops(encoding: WalkEncoding): {
54
56
  offset: number;
55
57
  color: string;
56
58
  abgr: number;
package/dist/util/SpatialIndex.js CHANGED
@@ -1,13 +1,13 @@
1
1
  import {
2
2
  EdgeSpatialIndex,
3
3
  SpatialIndex
4
- } from "../chunks/chunk-7PEYA3NA.js";
5
- import "../chunks/chunk-VSRRIFRF.js";
4
+ } from "../chunks/chunk-7YSIP3O2.js";
5
+ import "../chunks/chunk-P2GJBFNA.js";
6
6
  import "../chunks/chunk-HMXCN6PG.js";
7
- import "../chunks/chunk-3CXZUC2Y.js";
7
+ import "../chunks/chunk-3GORESBG.js";
8
8
  import "../chunks/chunk-TLWXLNLY.js";
9
9
  import "../chunks/chunk-3YBP46PB.js";
10
- import "../chunks/chunk-735MPLUL.js";
10
+ import "../chunks/chunk-JJV2GT2Z.js";
11
11
  import "../chunks/chunk-CPMHA4W5.js";
12
12
  import "../chunks/chunk-ZPZ7GNBT.js";
13
13
  import "../chunks/chunk-BSOZW3FC.js";
package/dist/util/edgeCurves.js CHANGED
@@ -1,11 +1,11 @@
1
1
  import {
2
2
  baseEdgeCurves
3
- } from "../chunks/chunk-VSRRIFRF.js";
3
+ } from "../chunks/chunk-P2GJBFNA.js";
4
4
  import "../chunks/chunk-HMXCN6PG.js";
5
- import "../chunks/chunk-3CXZUC2Y.js";
5
+ import "../chunks/chunk-3GORESBG.js";
6
6
  import "../chunks/chunk-TLWXLNLY.js";
7
7
  import "../chunks/chunk-3YBP46PB.js";
8
- import "../chunks/chunk-735MPLUL.js";
8
+ import "../chunks/chunk-JJV2GT2Z.js";
9
9
  import "../chunks/chunk-CPMHA4W5.js";
10
10
  import "../chunks/chunk-ZPZ7GNBT.js";
11
11
  import "../chunks/chunk-BSOZW3FC.js";
package/dist/util/geometry.js CHANGED
@@ -20,7 +20,7 @@ import {
20
20
  svgPath,
21
21
  translateCurves,
22
22
  yToXOf
23
- } from "../chunks/chunk-735MPLUL.js";
23
+ } from "../chunks/chunk-JJV2GT2Z.js";
24
24
  import "../chunks/chunk-CPMHA4W5.js";
25
25
  export {
26
26
  PATH_RIBBON_SPACING_PX,
package/dist/util/hitDetection.js CHANGED
@@ -4,14 +4,14 @@ import {
4
4
  findHoveredEdge,
5
5
  findHoveredNode,
6
6
  nodesUnderBox
7
- } from "../chunks/chunk-NHOXLUIL.js";
8
- import "../chunks/chunk-7PEYA3NA.js";
9
- import "../chunks/chunk-VSRRIFRF.js";
7
+ } from "../chunks/chunk-4JDO7ZLN.js";
8
+ import "../chunks/chunk-7YSIP3O2.js";
9
+ import "../chunks/chunk-P2GJBFNA.js";
10
10
  import "../chunks/chunk-HMXCN6PG.js";
11
- import "../chunks/chunk-3CXZUC2Y.js";
11
+ import "../chunks/chunk-3GORESBG.js";
12
12
  import "../chunks/chunk-TLWXLNLY.js";
13
13
  import "../chunks/chunk-3YBP46PB.js";
14
- import "../chunks/chunk-735MPLUL.js";
14
+ import "../chunks/chunk-JJV2GT2Z.js";
15
15
  import "../chunks/chunk-CPMHA4W5.js";
16
16
  import "../chunks/chunk-ZPZ7GNBT.js";
17
17
  import "../chunks/chunk-BSOZW3FC.js";
package/dist/version.js CHANGED
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  version
3
- } from "./chunks/chunk-L2RQV23D.js";
3
+ } from "./chunks/chunk-N3DCLT7M.js";
4
4
  export {
5
5
  version
6
6
  };
package/dist/viewport.js CHANGED
@@ -5,10 +5,10 @@ import {
5
5
  screenToLayout,
6
6
  viewportOf,
7
7
  zoomAbout
8
- } from "./chunks/chunk-2RCKHCF7.js";
9
- import "./chunks/chunk-S3ICPPXC.js";
8
+ } from "./chunks/chunk-3DHGSHC3.js";
9
+ import "./chunks/chunk-JVT3XTKN.js";
10
10
  import "./chunks/chunk-OPPVSPEF.js";
11
- import "./chunks/chunk-22ZMVREZ.js";
11
+ import "./chunks/chunk-NAYS472K.js";
12
12
  import "./chunks/chunk-CKUVEHSS.js";
13
13
  import "./chunks/chunk-VPE4AYP7.js";
14
14
  import "./chunks/chunk-TUMJNAOL.js";
@@ -18,13 +18,13 @@ import "./chunks/chunk-7L7MN2OM.js";
18
18
  import "./chunks/chunk-VX656OAZ.js";
19
19
  import "./chunks/chunk-VSSIYQYF.js";
20
20
  import "./chunks/chunk-LG2UK4MB.js";
21
- import "./chunks/chunk-YIWN32ZX.js";
21
+ import "./chunks/chunk-HNNP5QUN.js";
22
22
  import "./chunks/chunk-HKYXWZQS.js";
23
23
  import "./chunks/chunk-34BOZKIE.js";
24
- import "./chunks/chunk-3CXZUC2Y.js";
24
+ import "./chunks/chunk-3GORESBG.js";
25
25
  import "./chunks/chunk-TLWXLNLY.js";
26
26
  import "./chunks/chunk-3YBP46PB.js";
27
- import "./chunks/chunk-735MPLUL.js";
27
+ import "./chunks/chunk-JJV2GT2Z.js";
28
28
  import "./chunks/chunk-CPMHA4W5.js";
29
29
  import "./chunks/chunk-ZPZ7GNBT.js";
30
30
  import "./chunks/chunk-BSOZW3FC.js";