@jbrowse/bandage-core 11.6.1 → 11.7.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. package/dist/bubbles/bubbleHalos.js +5 -4
  2. package/dist/bubbles/classifyBubble.js +4 -3
  3. package/dist/bubbles/superbubbles.js +6 -5
  4. package/dist/chunks/{chunk-BW2NMXRV.js → chunk-3UGWYQNY.js} +1 -1
  5. package/dist/chunks/{chunk-YEYQFNFQ.js → chunk-3WSA4NNP.js} +1 -1
  6. package/dist/chunks/{chunk-SNF2MIEF.js → chunk-3Y2EFDID.js} +1 -1
  7. package/dist/chunks/{chunk-DV5B5UU7.js → chunk-5NZRT7GL.js} +5 -1
  8. package/dist/chunks/{chunk-MXLYBDOX.js → chunk-6XDTAKO7.js} +13 -7
  9. package/dist/chunks/{chunk-W2YAW36J.js → chunk-7L7MN2OM.js} +5 -2
  10. package/dist/chunks/{chunk-EVXXFMZ7.js → chunk-APLWFV4I.js} +3 -3
  11. package/dist/chunks/{chunk-KA4F3N55.js → chunk-ATDVS2CW.js} +2 -2
  12. package/dist/chunks/{chunk-MEVTV4FI.js → chunk-BXE3SBBN.js} +1 -1
  13. package/dist/chunks/{chunk-WI6SUU5B.js → chunk-CWCVQJYY.js} +1 -1
  14. package/dist/chunks/{chunk-BVWMVWLJ.js → chunk-EZGNBDHD.js} +8 -8
  15. package/dist/chunks/{chunk-4WXFQOYV.js → chunk-F7O56DVR.js} +2 -2
  16. package/dist/chunks/{chunk-RLCYVZ4B.js → chunk-FBPAX5K6.js} +1 -1
  17. package/dist/chunks/{chunk-5WB7O7IT.js → chunk-FNDNSDKW.js} +1 -1
  18. package/dist/chunks/{chunk-T3H5ELLA.js → chunk-FU57ZNRQ.js} +1 -1
  19. package/dist/chunks/{chunk-D3E7AXBB.js → chunk-G7SG4XMK.js} +23 -6
  20. package/dist/chunks/{chunk-HV35LDYH.js → chunk-HMEAGAGC.js} +1 -1
  21. package/dist/chunks/{chunk-7OTWJQGA.js → chunk-HTF32WSW.js} +4 -4
  22. package/dist/chunks/{chunk-2XEAITWM.js → chunk-I5SGYTRM.js} +1 -1
  23. package/dist/chunks/{chunk-6YRSOL4K.js → chunk-IN4IYSA2.js} +1 -1
  24. package/dist/chunks/{chunk-C6E6HXP5.js → chunk-J6XHW4KI.js} +2 -2
  25. package/dist/chunks/{chunk-KZMSSPS6.js → chunk-JGH2V54E.js} +1 -1
  26. package/dist/chunks/{chunk-OUM54ZSQ.js → chunk-JLIVX2SF.js} +1 -1
  27. package/dist/chunks/{chunk-EIY2SKD3.js → chunk-LG2UK4MB.js} +2 -1
  28. package/dist/chunks/{chunk-XXOBCANT.js → chunk-LKQOIPGE.js} +8 -8
  29. package/dist/chunks/{chunk-F3KQQDKP.js → chunk-OXW5OHYQ.js} +1 -1
  30. package/dist/chunks/{chunk-GZ36HNPJ.js → chunk-PCHEUVHB.js} +1 -1
  31. package/dist/chunks/{chunk-VO6FKNZE.js → chunk-PJWLYGRL.js} +1 -1
  32. package/dist/chunks/{chunk-56L6R6D2.js → chunk-Q7I563MH.js} +1 -1
  33. package/dist/chunks/{chunk-NXBW6KY6.js → chunk-RB2MDFQU.js} +2 -2
  34. package/dist/chunks/{chunk-ROLACYCO.js → chunk-RK7ZOFPR.js} +12 -12
  35. package/dist/chunks/{chunk-QCOVHLJO.js → chunk-RT4K2JMZ.js} +1 -1
  36. package/dist/chunks/{chunk-3FWNQNF7.js → chunk-SACSQ45G.js} +1 -1
  37. package/dist/chunks/{chunk-P5PBJONQ.js → chunk-SENPGW4O.js} +1 -1
  38. package/dist/chunks/{chunk-TXTSE44S.js → chunk-TCSV3II7.js} +1 -1
  39. package/dist/chunks/chunk-TLWXLNLY.js +124 -0
  40. package/dist/chunks/{chunk-2C5SATRZ.js → chunk-TUMJNAOL.js} +1 -1
  41. package/dist/chunks/{chunk-JGQQAUVL.js → chunk-UV2IJMIG.js} +2 -2
  42. package/dist/chunks/{chunk-JGHZ3N34.js → chunk-VB4IXIPM.js} +2 -2
  43. package/dist/chunks/{chunk-DZR37KXT.js → chunk-VSSIYQYF.js} +1 -1
  44. package/dist/chunks/{chunk-QD35GH4C.js → chunk-WUZH2OJ6.js} +2 -2
  45. package/dist/chunks/{chunk-OYCQVJYY.js → chunk-XTF2VWJN.js} +1 -1
  46. package/dist/chunks/{chunk-SVVFWTG4.js → chunk-ZKSC7QVE.js} +1 -1
  47. package/dist/cli/figure.js +32 -31
  48. package/dist/cli/fold.js +7 -6
  49. package/dist/deletionEdges.js +2 -1
  50. package/dist/figure.js +27 -26
  51. package/dist/figureData.js +26 -25
  52. package/dist/figureScene.js +19 -18
  53. package/dist/figureSettings.js +8 -7
  54. package/dist/gbzCut.js +4 -4
  55. package/dist/gbzWindow.js +3 -3
  56. package/dist/gfa/gfaConverter.js +2 -2
  57. package/dist/gfa/gfaTables.js +2 -2
  58. package/dist/gfa/graphTables.js +2 -2
  59. package/dist/gfa/walkStops.js +1 -1
  60. package/dist/graphLabels.js +3 -2
  61. package/dist/index.js +42 -41
  62. package/dist/labelLayout.js +7 -6
  63. package/dist/layout/forceCache.js +8 -7
  64. package/dist/layout/trimToWindow.js +9 -101
  65. package/dist/layout/tubeMapLayout.js +9 -8
  66. package/dist/layout/walkRowDraw.js +10 -7
  67. package/dist/layout/walkRowLayout.js +5 -5
  68. package/dist/layout/walkRowRuns.js +3 -3
  69. package/dist/layout/walkRows.js +4 -4
  70. package/dist/layout/walkStrip.js +13 -12
  71. package/dist/layoutModes.js +11 -10
  72. package/dist/pathColors.js +4 -3
  73. package/dist/pipeline.js +7 -6
  74. package/dist/referenceStrip.js +7 -6
  75. package/dist/renderer/GeometryBuilder.js +6 -5
  76. package/dist/tubeMap/axis.js +4 -3
  77. package/dist/tubeMap/bundle.js +10 -9
  78. package/dist/tubeMap/coarsen.js +10 -9
  79. package/dist/tubeMap/deviations.js +11 -10
  80. package/dist/tubeMap/draw.js +5 -5
  81. package/dist/tubeMap/genes.js +5 -4
  82. package/dist/tubeMap/nodeColors.js +7 -6
  83. package/dist/types/deletionEdges.d.ts +1 -1
  84. package/dist/types/gfa/graphTables.d.ts +2 -0
  85. package/dist/types/gfa/walkStops.d.ts +1 -1
  86. package/dist/types/layout/trimToWindow.d.ts +1 -0
  87. package/dist/types/layout/walkRowDraw.d.ts +2 -1
  88. package/dist/types/layout/walkRows.d.ts +1 -0
  89. package/dist/types/types.d.ts +8 -0
  90. package/dist/types/version.d.ts +1 -1
  91. package/dist/util/SpatialIndex.js +4 -3
  92. package/dist/util/edgeCurves.js +3 -2
  93. package/dist/util/hitDetection.js +5 -4
  94. package/dist/version.js +1 -1
  95. package/dist/viewport.js +8 -7
  96. package/dist/walkEncoding.js +7 -6
  97. package/dist/walkHighlight.js +9 -8
  98. package/dist/walkKey.js +5 -4
  99. package/package.json +1 -1
package/dist/version.js CHANGED
@@ -1,6 +1,6 @@
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  import {
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  version
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- } from "./chunks/chunk-TXTSE44S.js";
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+ } from "./chunks/chunk-TCSV3II7.js";
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  export {
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  version
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  };
package/dist/viewport.js CHANGED
@@ -5,23 +5,24 @@ import {
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  screenToLayout,
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  viewportOf,
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  zoomAbout
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- } from "./chunks/chunk-RLCYVZ4B.js";
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- import "./chunks/chunk-7OTWJQGA.js";
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+ } from "./chunks/chunk-FBPAX5K6.js";
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+ import "./chunks/chunk-HTF32WSW.js";
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  import "./chunks/chunk-OPPVSPEF.js";
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  import "./chunks/chunk-3PZSBNLI.js";
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  import "./chunks/chunk-CKUVEHSS.js";
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  import "./chunks/chunk-VPE4AYP7.js";
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- import "./chunks/chunk-2C5SATRZ.js";
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+ import "./chunks/chunk-TUMJNAOL.js";
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  import "./chunks/chunk-QYBZZI5H.js";
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  import "./chunks/chunk-CFXXFHRK.js";
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- import "./chunks/chunk-W2YAW36J.js";
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+ import "./chunks/chunk-7L7MN2OM.js";
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  import "./chunks/chunk-VX656OAZ.js";
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- import "./chunks/chunk-DZR37KXT.js";
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- import "./chunks/chunk-EIY2SKD3.js";
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+ import "./chunks/chunk-VSSIYQYF.js";
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+ import "./chunks/chunk-LG2UK4MB.js";
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  import "./chunks/chunk-2VMKQKVO.js";
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  import "./chunks/chunk-HKYXWZQS.js";
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  import "./chunks/chunk-34BOZKIE.js";
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- import "./chunks/chunk-DV5B5UU7.js";
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+ import "./chunks/chunk-5NZRT7GL.js";
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+ import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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  import "./chunks/chunk-VACK24HF.js";
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  import "./chunks/chunk-CPMHA4W5.js";
package/dist/walkEncoding.js CHANGED
@@ -9,19 +9,20 @@ import {
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  schemeColor,
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  schemeCss,
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  schemeRgb
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- } from "./chunks/chunk-2XEAITWM.js";
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- import "./chunks/chunk-JGHZ3N34.js";
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+ } from "./chunks/chunk-I5SGYTRM.js";
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+ import "./chunks/chunk-VB4IXIPM.js";
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  import "./chunks/chunk-G2FD7S3C.js";
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  import "./chunks/chunk-GQZVR5DW.js";
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- import "./chunks/chunk-OYCQVJYY.js";
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- import "./chunks/chunk-BW2NMXRV.js";
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+ import "./chunks/chunk-XTF2VWJN.js";
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+ import "./chunks/chunk-3UGWYQNY.js";
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  import "./chunks/chunk-ZANALBSX.js";
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  import "./chunks/chunk-VX656OAZ.js";
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- import "./chunks/chunk-T3H5ELLA.js";
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+ import "./chunks/chunk-FU57ZNRQ.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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  import "./chunks/chunk-2VMKQKVO.js";
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- import "./chunks/chunk-DV5B5UU7.js";
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+ import "./chunks/chunk-5NZRT7GL.js";
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+ import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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  import "./chunks/chunk-VACK24HF.js";
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  import "./chunks/chunk-CPMHA4W5.js";
package/dist/walkHighlight.js CHANGED
@@ -2,21 +2,22 @@ import {
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  facetLifts,
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  walkHighlight,
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  walkLift
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- } from "./chunks/chunk-EVXXFMZ7.js";
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- import "./chunks/chunk-2XEAITWM.js";
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- import "./chunks/chunk-JGHZ3N34.js";
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+ } from "./chunks/chunk-APLWFV4I.js";
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+ import "./chunks/chunk-I5SGYTRM.js";
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+ import "./chunks/chunk-VB4IXIPM.js";
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  import "./chunks/chunk-G2FD7S3C.js";
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  import "./chunks/chunk-GQZVR5DW.js";
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- import "./chunks/chunk-OYCQVJYY.js";
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- import "./chunks/chunk-BW2NMXRV.js";
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+ import "./chunks/chunk-XTF2VWJN.js";
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+ import "./chunks/chunk-3UGWYQNY.js";
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  import "./chunks/chunk-ZANALBSX.js";
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  import "./chunks/chunk-VX656OAZ.js";
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- import "./chunks/chunk-EIY2SKD3.js";
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- import "./chunks/chunk-T3H5ELLA.js";
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+ import "./chunks/chunk-LG2UK4MB.js";
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+ import "./chunks/chunk-FU57ZNRQ.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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  import "./chunks/chunk-2VMKQKVO.js";
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- import "./chunks/chunk-DV5B5UU7.js";
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+ import "./chunks/chunk-5NZRT7GL.js";
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+ import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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  import "./chunks/chunk-VACK24HF.js";
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  import "./chunks/chunk-CPMHA4W5.js";
package/dist/walkKey.js CHANGED
@@ -2,13 +2,14 @@ import {
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  rangeText,
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  walkKey,
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  walkPosition
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- } from "./chunks/chunk-JGQQAUVL.js";
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- import "./chunks/chunk-EIY2SKD3.js";
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- import "./chunks/chunk-T3H5ELLA.js";
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+ } from "./chunks/chunk-UV2IJMIG.js";
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+ import "./chunks/chunk-LG2UK4MB.js";
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+ import "./chunks/chunk-FU57ZNRQ.js";
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  import "./chunks/chunk-HMXCN6PG.js";
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  import "./chunks/chunk-AB35TJST.js";
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  import "./chunks/chunk-2VMKQKVO.js";
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- import "./chunks/chunk-DV5B5UU7.js";
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+ import "./chunks/chunk-5NZRT7GL.js";
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+ import "./chunks/chunk-TLWXLNLY.js";
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  import "./chunks/chunk-3YBP46PB.js";
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  import "./chunks/chunk-VACK24HF.js";
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  import "./chunks/chunk-CPMHA4W5.js";
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@jbrowse/bandage-core",
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- "version": "11.6.1",
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+ "version": "11.7.1",
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  "description": "Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out",
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  "license": "GPL-3.0-or-later",
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  "repository": {