@jbrowse/bandage-core 11.6.1 → 11.7.1

package/dist/bubbles/bubbleHalos.js

@@ -1,14 +1,15 @@
 import {
   bubbleHalos,
   coversGraph
-} from "../chunks/chunk-KZMSSPS6.js";
-import "../chunks/chunk-SNF2MIEF.js";
+} from "../chunks/chunk-JGH2V54E.js";
+import "../chunks/chunk-3Y2EFDID.js";
 import "../chunks/chunk-FX4RDMDN.js";
-import "../chunks/chunk-T3H5ELLA.js";
+import "../chunks/chunk-FU57ZNRQ.js";
 import "../chunks/chunk-HMXCN6PG.js";
 import "../chunks/chunk-AB35TJST.js";
 import "../chunks/chunk-2VMKQKVO.js";
-import "../chunks/chunk-DV5B5UU7.js";
+import "../chunks/chunk-5NZRT7GL.js";
+import "../chunks/chunk-TLWXLNLY.js";
 import "../chunks/chunk-3YBP46PB.js";
 import "../chunks/chunk-VACK24HF.js";
 import "../chunks/chunk-CPMHA4W5.js";

package/dist/bubbles/classifyBubble.js

@@ -3,13 +3,14 @@ import {
   BUBBLE_KIND_NAMES,
   bubbleSegmentIds,
   classifyBubble
-} from "../chunks/chunk-SNF2MIEF.js";
+} from "../chunks/chunk-3Y2EFDID.js";
 import "../chunks/chunk-FX4RDMDN.js";
-import "../chunks/chunk-T3H5ELLA.js";
+import "../chunks/chunk-FU57ZNRQ.js";
 import "../chunks/chunk-HMXCN6PG.js";
 import "../chunks/chunk-AB35TJST.js";
 import "../chunks/chunk-2VMKQKVO.js";
-import "../chunks/chunk-DV5B5UU7.js";
+import "../chunks/chunk-5NZRT7GL.js";
+import "../chunks/chunk-TLWXLNLY.js";
 import "../chunks/chunk-3YBP46PB.js";
 import "../chunks/chunk-VACK24HF.js";
 import "../chunks/chunk-CPMHA4W5.js";

package/dist/bubbles/superbubbles.js

@@ -1,19 +1,20 @@
 import {
   graphBubbles,
   superbubblesFromGraph
-} from "../chunks/chunk-C6E6HXP5.js";
-import "../chunks/chunk-KZMSSPS6.js";
+} from "../chunks/chunk-J6XHW4KI.js";
+import "../chunks/chunk-JGH2V54E.js";
 import "../chunks/chunk-RFG42VIO.js";
-import "../chunks/chunk-SNF2MIEF.js";
+import "../chunks/chunk-3Y2EFDID.js";
 import "../chunks/chunk-FX4RDMDN.js";
 import "../chunks/chunk-MHZTTLBU.js";
 import "../chunks/chunk-UAFATXYA.js";
 import "../chunks/chunk-VX656OAZ.js";
-import "../chunks/chunk-T3H5ELLA.js";
+import "../chunks/chunk-FU57ZNRQ.js";
 import "../chunks/chunk-HMXCN6PG.js";
 import "../chunks/chunk-AB35TJST.js";
 import "../chunks/chunk-2VMKQKVO.js";
-import "../chunks/chunk-DV5B5UU7.js";
+import "../chunks/chunk-5NZRT7GL.js";
+import "../chunks/chunk-TLWXLNLY.js";
 import "../chunks/chunk-3YBP46PB.js";
 import "../chunks/chunk-VACK24HF.js";
 import "../chunks/chunk-CPMHA4W5.js";

package/dist/chunks/{chunk-BW2NMXRV.js → chunk-3UGWYQNY.js}

@@ -1,6 +1,6 @@
 import {
   groupDigits
-} from "./chunk-T3H5ELLA.js";
+} from "./chunk-FU57ZNRQ.js";
 import {
   pathOrigin
 } from "./chunk-3YBP46PB.js";

package/dist/chunks/{chunk-YEYQFNFQ.js → chunk-3WSA4NNP.js}

@@ -1,7 +1,7 @@
 import {
   computeColorSchemeRange,
   getNodeColor
-} from "./chunk-JGHZ3N34.js";
+} from "./chunk-VB4IXIPM.js";
 import {
   abgrToCssRgba
 } from "./chunk-G2FD7S3C.js";

package/dist/chunks/{chunk-SNF2MIEF.js → chunk-3Y2EFDID.js}

@@ -3,7 +3,7 @@ import {
 } from "./chunk-FX4RDMDN.js";
 import {
   formatBp
-} from "./chunk-T3H5ELLA.js";
+} from "./chunk-FU57ZNRQ.js";
 
 // src/bubbles/classifyBubble.ts
 var REPEAT_GROWTH = 10;

package/dist/chunks/{chunk-DV5B5UU7.js → chunk-5NZRT7GL.js}

@@ -1,3 +1,6 @@
+import {
+  unclipped
+} from "./chunk-TLWXLNLY.js";
 import {
   referenceVisitStarts
 } from "./chunk-3YBP46PB.js";
@@ -117,7 +120,8 @@ function switchesCopy(copies, start, bp) {
   const near = [copies[i - 1], copies[i]].filter((c) => c !== void 0).sort((a, b) => Math.abs(a.at - start) - Math.abs(b.at - start))[0];
   return near !== void 0 && Math.abs(near.at - start) <= near.copy && Math.abs(bp - near.copy) <= near.copy * COPY_SWITCH_SHARE;
 }
-function deletionEdges(graph) {
+function deletionEdges(cut) {
+  const graph = unclipped(cut);
   const byId = new Map(graph.nodes.map((n) => [n.id, n]));
   const backbone = backboneBySequence(graph);
   const startsOf = referenceVisitStarts(graph);

package/dist/chunks/{chunk-MXLYBDOX.js → chunk-6XDTAKO7.js}

@@ -3,7 +3,7 @@ import {
 } from "./chunk-H2H4Y3TV.js";
 import {
   REFERENCE_RAMP_ALT_CSS
-} from "./chunk-JGHZ3N34.js";
+} from "./chunk-VB4IXIPM.js";
 import {
   RAMP_GRADIENT_CSS,
   RAMP_GRADIENT_STOPS,
@@ -13,7 +13,7 @@ import {
 import {
   GAP_CAUSE_TEXT,
   OUTSIDE_TEXT
-} from "./chunk-EIY2SKD3.js";
+} from "./chunk-LG2UK4MB.js";
 import {
   LABEL_CHAR_PX
 } from "./chunk-AB35TJST.js";
@@ -30,6 +30,7 @@ var OFF_REFERENCE = "#8e3fbf";
 var OUTSIDE_CUT = "#bdbdbd";
 var MISSING_INK = "#8a8a8a";
 var UNKNOWN_GAP = "#e2e2e2";
+var ABRIDGED_GAP = "#d9a441";
 var GENE_INK = "#1c1c22";
 var BAR_PX = 12;
 var GAP_PX = 4;
@@ -48,7 +49,10 @@ function units(bp, unit) {
   return unit ? ` \u2248 ${Math.round(bp / unit)} units` : "";
 }
 var near = ({ refName, start }) => `${panSNContig(refName)}:${start < 1e6 ? `${Math.round(start / 1e3)} kb` : `${(start / 1e6).toFixed(1)} Mb`}`;
-function gapsText(gapBp, runs) {
+function stepsText(steps) {
+  return steps < 1e3 ? `${steps}` : `${Math.round(steps / 1e3)} k`;
+}
+function gapsText(gapBp, runs, abridgedSteps = 0) {
   if (gapBp <= 0) {
     return "";
   }
@@ -69,14 +73,15 @@ function gapsText(gapBp, runs) {
     [bpOf("unknown"), GAP_CAUSE_TEXT.unknown],
     [bpOf(void 0), OUTSIDE_TEXT]
   ];
-  return parts.filter(([bp]) => bp > 0).map(([bp, text]) => ` \xB7 ${kb(bp)} ${text}`).join("");
+  const abridged = bpOf("abridged");
+  return (abridged > 0 ? ` \xB7 ${stepsText(abridgedSteps)} steps, ${kb(abridged)} not loaded` : "") + parts.filter(([bp]) => bp > 0).map(([bp, text]) => ` \xB7 ${kb(bp)} ${text}`).join("");
 }
 function walkRowReadout(row, reference, unit, call) {
   const { bp, gapBp, complete, stop } = row;
   if (!reference) {
     return `${kb(bp)}${units(bp, unit)}`;
   }
-  const outside = gapsText(gapBp, row.runs);
+  const outside = gapsText(gapBp, row.runs, row.abridgedSteps);
   const called = call ? ` \xB7 called ${kb(call.bp)}${call.spanningReads === 0 ? " \xB7 no spanning read" : ""}` : "";
   if (complete) {
     const delta = bp - reference.bp;
@@ -107,7 +112,7 @@ function unitTicks(bp, unit, pxPerBp) {
   return ticks;
 }
 function gapStyle(cause) {
-  return cause === "missing" ? { fill: MISSING_INK, px: MISSING_PX, label: GAP_CAUSE_TEXT.missing } : cause === "unknown" ? { fill: UNKNOWN_GAP, px: GAP_PX, label: GAP_CAUSE_TEXT.unknown } : { fill: OUTSIDE_CUT, px: GAP_PX, label: OUTSIDE_TEXT };
+  return cause === "missing" ? { fill: MISSING_INK, px: MISSING_PX, label: GAP_CAUSE_TEXT.missing } : cause === "unknown" ? { fill: UNKNOWN_GAP, px: GAP_PX, label: GAP_CAUSE_TEXT.unknown } : cause === "abridged" ? { fill: ABRIDGED_GAP, px: GAP_PX, label: GAP_CAUSE_TEXT.abridged } : { fill: OUTSIDE_CUT, px: GAP_PX, label: OUTSIDE_TEXT };
 }
 function runPaint(run, ramp) {
   if (run.gap) {
@@ -221,7 +226,7 @@ function walkRowsKey(bars, o = {}) {
     (row) => row.runs.filter((run) => run.gap)
   );
   const labels = new Set(gaps.map((run) => gapStyle(run.cause).label));
-  for (const cause of [void 0, "missing", "unknown"]) {
+  for (const cause of [void 0, "missing", "unknown", "abridged"]) {
     const { fill, px, label } = gapStyle(cause);
     if (labels.has(label)) {
       entries.push({ swatch: { kind: "gap", fill, px }, label });
@@ -531,6 +536,7 @@ export {
   OUTSIDE_CUT,
   MISSING_INK,
   UNKNOWN_GAP,
+  ABRIDGED_GAP,
   GENE_INK,
   BAR_PX,
   GAP_PX,

package/dist/chunks/{chunk-W2YAW36J.js → chunk-7L7MN2OM.js}

@@ -2,7 +2,7 @@ import {
   stopAt,
   stopFields,
   walkStopTags
-} from "./chunk-EIY2SKD3.js";
+} from "./chunk-LG2UK4MB.js";
 import {
   PathVisits
 } from "./chunk-ZPZ7GNBT.js";
@@ -19,6 +19,8 @@ function tablePath(w, p) {
   const walkName = w.names[p];
   const fields = panSNFields(walkName);
   const start = w.starts[p];
+  const steps = w.abridgedSteps?.[p] ?? Number.NaN;
+  const abridged = Number.isNaN(steps) ? {} : { abridged: { steps, bp: w.abridgedBp?.[p] ?? 0 } };
   return fields ? {
     name: `${fields.sample}#${fields.haplotype}#${fields.contig}`,
     start,
@@ -26,7 +28,8 @@ function tablePath(w, p) {
     ...stopFields(
       w.before && stopAt(w.before, p),
       w.after && stopAt(w.after, p)
-    )
+    ),
+    ...abridged
   } : { name: pLineName(walkName, start, w.ends[p]), start };
 }
 function namesByList(lists, names, listCount, pathNames) {

package/dist/chunks/{chunk-EVXXFMZ7.js → chunk-APLWFV4I.js}

@@ -1,13 +1,13 @@
 import {
   encodedColor,
   resolveEncoding
-} from "./chunk-2XEAITWM.js";
+} from "./chunk-I5SGYTRM.js";
 import {
   rampFraction
-} from "./chunk-JGHZ3N34.js";
+} from "./chunk-VB4IXIPM.js";
 import {
   gapParts
-} from "./chunk-EIY2SKD3.js";
+} from "./chunk-LG2UK4MB.js";
 import {
   pathOrigin
 } from "./chunk-3YBP46PB.js";

package/dist/chunks/{chunk-KA4F3N55.js → chunk-ATDVS2CW.js}

@@ -1,10 +1,10 @@
 import {
   nodesUnderBox
-} from "./chunk-56L6R6D2.js";
+} from "./chunk-Q7I563MH.js";
 import {
   graphLabels,
   rowLabelBox
-} from "./chunk-T3H5ELLA.js";
+} from "./chunk-FU57ZNRQ.js";
 import {
   LABEL_CHAR_PX,
   LABEL_PAD,

package/dist/chunks/{chunk-MEVTV4FI.js → chunk-BXE3SBBN.js}

@@ -1,7 +1,7 @@
 import {
   walkRowRuns,
   walkRowsOf
-} from "./chunk-D3E7AXBB.js";
+} from "./chunk-G7SG4XMK.js";
 
 // src/layout/walkRows.ts
 function filterSamples(rows, samples) {

package/dist/chunks/{chunk-WI6SUU5B.js → chunk-CWCVQJYY.js}

@@ -1,6 +1,6 @@
 import {
   pathSteps
-} from "./chunk-NXBW6KY6.js";
+} from "./chunk-RB2MDFQU.js";
 import {
   pathOrigin
 } from "./chunk-3YBP46PB.js";

package/dist/chunks/{chunk-BVWMVWLJ.js → chunk-EZGNBDHD.js}

@@ -4,27 +4,27 @@ import {
 import {
   facetLifts,
   walkLift
-} from "./chunk-EVXXFMZ7.js";
+} from "./chunk-APLWFV4I.js";
 import {
   buildGeometry,
   computeReferenceRamp
-} from "./chunk-JGHZ3N34.js";
+} from "./chunk-VB4IXIPM.js";
 import {
   walkKey
-} from "./chunk-JGQQAUVL.js";
+} from "./chunk-UV2IJMIG.js";
 import {
   walkRowsExtent
-} from "./chunk-P5PBJONQ.js";
+} from "./chunk-SENPGW4O.js";
 import {
   pathLegend,
   walkLabelsOf
-} from "./chunk-BW2NMXRV.js";
+} from "./chunk-3UGWYQNY.js";
 import {
   FIGURE_DEFAULTS
-} from "./chunk-3FWNQNF7.js";
+} from "./chunk-SACSQ45G.js";
 import {
   drawingBounds
-} from "./chunk-7OTWJQGA.js";
+} from "./chunk-HTF32WSW.js";
 import {
   referenceLabel
 } from "./chunk-5ORP7EFJ.js";
@@ -34,7 +34,7 @@ import {
 import {
   deletionDrawing,
   deletionEdges
-} from "./chunk-DV5B5UU7.js";
+} from "./chunk-5NZRT7GL.js";
 import {
   facetCells,
   facetSettingOf

package/dist/chunks/{chunk-4WXFQOYV.js → chunk-F7O56DVR.js}

@@ -3,14 +3,14 @@ import {
   boxesGenes,
   rowPitch,
   rowSpan
-} from "./chunk-MXLYBDOX.js";
+} from "./chunk-6XDTAKO7.js";
 import {
   el
 } from "./chunk-H2H4Y3TV.js";
 import {
   READOUT_ROOM,
   longestBar
-} from "./chunk-P5PBJONQ.js";
+} from "./chunk-SENPGW4O.js";
 import {
   LABEL_CHAR_PX
 } from "./chunk-AB35TJST.js";

package/dist/chunks/{chunk-RLCYVZ4B.js → chunk-FBPAX5K6.js}

@@ -1,6 +1,6 @@
 import {
   clampZoom
-} from "./chunk-7OTWJQGA.js";
+} from "./chunk-HTF32WSW.js";
 
 // src/viewport.ts
 function axisScaleOf(scale, pixelRows) {

package/dist/chunks/{chunk-5WB7O7IT.js → chunk-FNDNSDKW.js}

@@ -6,7 +6,7 @@ import {
   haplotypeWanted,
   referencePathQuery,
   referenceSamplesOf
-} from "./chunk-SVVFWTG4.js";
+} from "./chunk-ZKSC7QVE.js";
 import {
   panSNSample
 } from "./chunk-2JL2JVZ2.js";

package/dist/chunks/{chunk-T3H5ELLA.js → chunk-FU57ZNRQ.js}

@@ -10,7 +10,7 @@ import {
 } from "./chunk-2VMKQKVO.js";
 import {
   edgeCurvesOf
-} from "./chunk-DV5B5UU7.js";
+} from "./chunk-5NZRT7GL.js";
 import {
   curveBounds,
   curveMidpoint,

package/dist/chunks/{chunk-D3E7AXBB.js → chunk-G7SG4XMK.js}

@@ -1,10 +1,10 @@
 import {
   tableNodeIds,
   tablePath
-} from "./chunk-W2YAW36J.js";
+} from "./chunk-7L7MN2OM.js";
 import {
   gapParts
-} from "./chunk-EIY2SKD3.js";
+} from "./chunk-LG2UK4MB.js";
 import {
   pathOrigin
 } from "./chunk-3YBP46PB.js";
@@ -20,7 +20,13 @@ import {
 var RUN_ON_REFERENCE = 1;
 var RUN_REVERSED = 2;
 var RUN_GAP = 4;
-var GAP_CAUSES = [void 0, "missing", "elsewhere", "unknown"];
+var GAP_CAUSES = [
+  void 0,
+  "missing",
+  "elsewhere",
+  "unknown",
+  "abridged"
+];
 var CAUSE_SHIFT = 3;
 var causeFlags = (cause) => GAP_CAUSES.indexOf(cause) << CAUSE_SHIFT;
 function referenceOf(names, referencePath, rankZero) {
@@ -230,8 +236,10 @@ function walkRowRuns(source, region, o = {}) {
     const head = heads[pieces[0]];
     const ordered = [...pieces].sort(byStart);
     let count = ordered.length - 1;
+    let abridgedSteps = 0;
     for (const piece of ordered) {
-      count += to[piece] - from[piece];
+      count += to[piece] - from[piece] + (heads[piece].abridged ? 1 : 0);
+      abridgedSteps += heads[piece].abridged?.steps ?? 0;
     }
     if (count > steps.length) {
       steps = new Int32Array(count * 2);
@@ -260,8 +268,16 @@ function walkRowRuns(source, region, o = {}) {
         stepStart[length++] = end;
       }
       let pos = start2 ?? 0;
+      const abridged = heads[piece].abridged;
       for (let s = from[piece], stop2 = to[piece]; s < stop2; s++) {
         const node = all[s];
+        const bp3 = abridged ? abridged.bp - (pos - (start2 ?? 0)) - lengthOf(node) : 0;
+        if (bp3 > 0 && s === stop2 - 1 && s > from[piece]) {
+          partsAt.set(length, [{ bp: bp3, cause: "abridged" }]);
+          steps[length] = -bp3;
+          stepStart[length++] = pos;
+          pos += bp3;
+        }
         steps[length] = node;
         stepStart[length++] = pos;
         pos += lengthOf(node);
@@ -441,7 +457,8 @@ function walkRowRuns(source, region, o = {}) {
       gapBp,
       complete,
       stop,
-      axis
+      axis,
+      ...abridgedSteps > 0 ? { abridgedSteps } : {}
     };
   };
   const referenceRow = rowOf(referencePieces);
@@ -493,7 +510,7 @@ function runAt(t, k) {
   };
   if (f & RUN_GAP) {
     run.gap = true;
-    const cause = GAP_CAUSES[f >> CAUSE_SHIFT & 3];
+    const cause = GAP_CAUSES[f >> CAUSE_SHIFT & 7];
     if (cause) {
       run.cause = cause;
     }

package/dist/chunks/{chunk-HV35LDYH.js → chunk-HMEAGAGC.js}

@@ -9,7 +9,7 @@ import {
 } from "./chunk-SDI6BVG7.js";
 import {
   referenceWalkName
-} from "./chunk-D3E7AXBB.js";
+} from "./chunk-G7SG4XMK.js";
 import {
   pathOrigin
 } from "./chunk-3YBP46PB.js";

package/dist/chunks/{chunk-7OTWJQGA.js → chunk-HTF32WSW.js}

@@ -14,16 +14,16 @@ import {
 } from "./chunk-VPE4AYP7.js";
 import {
   convertGFAToGraph
-} from "./chunk-2C5SATRZ.js";
+} from "./chunk-TUMJNAOL.js";
 import {
   parseGFA
 } from "./chunk-CFXXFHRK.js";
 import {
   graphFromTables
-} from "./chunk-W2YAW36J.js";
+} from "./chunk-7L7MN2OM.js";
 import {
   gfaTables
-} from "./chunk-DZR37KXT.js";
+} from "./chunk-VSSIYQYF.js";
 import {
   mergeRuns,
   splitRuns
@@ -39,7 +39,7 @@ import {
 import {
   deletionDrawing,
   deletionEdges
-} from "./chunk-DV5B5UU7.js";
+} from "./chunk-5NZRT7GL.js";
 import {
   anchorGraph
 } from "./chunk-3YBP46PB.js";

package/dist/chunks/{chunk-2XEAITWM.js → chunk-I5SGYTRM.js}

@@ -1,7 +1,7 @@
 import {
   REFERENCE_RAMP_ALT_COLOR,
   hslToRgb
-} from "./chunk-JGHZ3N34.js";
+} from "./chunk-VB4IXIPM.js";
 import {
   packAbgr
 } from "./chunk-G2FD7S3C.js";

package/dist/chunks/{chunk-6YRSOL4K.js → chunk-IN4IYSA2.js}

@@ -1,6 +1,6 @@
 import {
   baseEdgeCurves
-} from "./chunk-OYCQVJYY.js";
+} from "./chunk-XTF2VWJN.js";
 import {
   curveBounds,
   pathRibbonOffsets

package/dist/chunks/{chunk-C6E6HXP5.js → chunk-J6XHW4KI.js}

@@ -1,6 +1,6 @@
 import {
   coversGraph
-} from "./chunk-KZMSSPS6.js";
+} from "./chunk-JGH2V54E.js";
 import {
   bubblesFromGraph,
   derivedBubble,
@@ -10,7 +10,7 @@ import {
 } from "./chunk-RFG42VIO.js";
 import {
   bubbleSegmentIds
-} from "./chunk-SNF2MIEF.js";
+} from "./chunk-3Y2EFDID.js";
 import {
   bubbleSubgraph
 } from "./chunk-MHZTTLBU.js";

package/dist/chunks/{chunk-KZMSSPS6.js → chunk-JGH2V54E.js}

@@ -1,7 +1,7 @@
 import {
   bubbleSegmentIds,
   classifyBubble
-} from "./chunk-SNF2MIEF.js";
+} from "./chunk-3Y2EFDID.js";
 import {
   svgPath
 } from "./chunk-VACK24HF.js";

package/dist/chunks/{chunk-OUM54ZSQ.js → chunk-JLIVX2SF.js}

@@ -1,6 +1,6 @@
 import {
   pathSteps
-} from "./chunk-NXBW6KY6.js";
+} from "./chunk-RB2MDFQU.js";
 import {
   pathOrigin
 } from "./chunk-3YBP46PB.js";

package/dist/chunks/{chunk-EIY2SKD3.js → chunk-LG2UK4MB.js}

@@ -5,7 +5,8 @@ var STOP_KINDS = ["elsewhere", "break", "end"];
 var GAP_CAUSE_TEXT = {
   missing: "not in the graph",
   elsewhere: "on nodes filed elsewhere",
-  unknown: "gap, cause unknown"
+  unknown: "gap, cause unknown",
+  abridged: "abridged: steps not loaded"
 };
 var OUTSIDE_TEXT = "outside the extracted subgraph";
 function gapParts(bp, after, before) {

package/dist/chunks/{chunk-XXOBCANT.js → chunk-LKQOIPGE.js}

@@ -3,25 +3,25 @@ import {
 } from "./chunk-CO6RGQAD.js";
 import {
   layoutModeByValue
-} from "./chunk-QD35GH4C.js";
+} from "./chunk-WUZH2OJ6.js";
 import {
   parseRegion
-} from "./chunk-5WB7O7IT.js";
+} from "./chunk-FNDNSDKW.js";
 import {
   genePins
 } from "./chunk-BFUS3ENH.js";
 import {
   version
-} from "./chunk-TXTSE44S.js";
+} from "./chunk-TCSV3II7.js";
 import {
   axisScaleOf
-} from "./chunk-RLCYVZ4B.js";
+} from "./chunk-FBPAX5K6.js";
 import {
   figureScene
-} from "./chunk-BVWMVWLJ.js";
+} from "./chunk-EZGNBDHD.js";
 import {
   encodingStops
-} from "./chunk-2XEAITWM.js";
+} from "./chunk-I5SGYTRM.js";
 import {
   abgrAlpha,
   abgrBlue,
@@ -30,13 +30,13 @@ import {
 } from "./chunk-G2FD7S3C.js";
 import {
   FIGURE_DEFAULTS
-} from "./chunk-3FWNQNF7.js";
+} from "./chunk-SACSQ45G.js";
 import {
   engineSettingsOf,
   fitTransform,
   forceLayout,
   loadGraph
-} from "./chunk-7OTWJQGA.js";
+} from "./chunk-HTF32WSW.js";
 import {
   referenceVisitStarts
 } from "./chunk-3YBP46PB.js";

package/dist/chunks/{chunk-F3KQQDKP.js → chunk-OXW5OHYQ.js}

@@ -1,7 +1,7 @@
 import {
   engineKey,
   forceLayout
-} from "./chunk-7OTWJQGA.js";
+} from "./chunk-HTF32WSW.js";
 
 // src/layout/forceCache.ts
 var DEFAULT_SIZE = 4;

package/dist/chunks/{chunk-GZ36HNPJ.js → chunk-PCHEUVHB.js}

@@ -1,6 +1,6 @@
 import {
   tubeSpan
-} from "./chunk-VO6FKNZE.js";
+} from "./chunk-PJWLYGRL.js";
 
 // src/tubeMap/genes.ts
 function tubeMapGenes(byRefName, genes) {

package/dist/chunks/{chunk-VO6FKNZE.js → chunk-PJWLYGRL.js}

@@ -1,6 +1,6 @@
 import {
   formatBp
-} from "./chunk-T3H5ELLA.js";
+} from "./chunk-FU57ZNRQ.js";
 import {
   pushTo
 } from "./chunk-BSOZW3FC.js";

package/dist/chunks/{chunk-56L6R6D2.js → chunk-Q7I563MH.js}

@@ -1,7 +1,7 @@
 import {
   EdgeSpatialIndex,
   SpatialIndex
-} from "./chunk-6YRSOL4K.js";
+} from "./chunk-IN4IYSA2.js";
 import {
   weakMemo
 } from "./chunk-HMXCN6PG.js";

package/dist/chunks/{chunk-NXBW6KY6.js → chunk-RB2MDFQU.js}

@@ -4,11 +4,11 @@ import {
 } from "./chunk-SDI6BVG7.js";
 import {
   referenceWalkName
-} from "./chunk-D3E7AXBB.js";
+} from "./chunk-G7SG4XMK.js";
 import {
   pathCssColor,
   pathGreyCssColor
-} from "./chunk-BW2NMXRV.js";
+} from "./chunk-3UGWYQNY.js";
 import {
   pathOrigin
 } from "./chunk-3YBP46PB.js";