@jbrowse/bandage-core 11.6.1 → 11.7.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/bubbles/bubbleHalos.js +5 -4
- package/dist/bubbles/classifyBubble.js +4 -3
- package/dist/bubbles/superbubbles.js +6 -5
- package/dist/chunks/{chunk-BW2NMXRV.js → chunk-3UGWYQNY.js} +1 -1
- package/dist/chunks/{chunk-YEYQFNFQ.js → chunk-3WSA4NNP.js} +1 -1
- package/dist/chunks/{chunk-SNF2MIEF.js → chunk-3Y2EFDID.js} +1 -1
- package/dist/chunks/{chunk-DV5B5UU7.js → chunk-5NZRT7GL.js} +5 -1
- package/dist/chunks/{chunk-MXLYBDOX.js → chunk-6XDTAKO7.js} +13 -7
- package/dist/chunks/{chunk-W2YAW36J.js → chunk-7L7MN2OM.js} +5 -2
- package/dist/chunks/{chunk-EVXXFMZ7.js → chunk-APLWFV4I.js} +3 -3
- package/dist/chunks/{chunk-KA4F3N55.js → chunk-ATDVS2CW.js} +2 -2
- package/dist/chunks/{chunk-MEVTV4FI.js → chunk-BXE3SBBN.js} +1 -1
- package/dist/chunks/{chunk-WI6SUU5B.js → chunk-CWCVQJYY.js} +1 -1
- package/dist/chunks/{chunk-BVWMVWLJ.js → chunk-EZGNBDHD.js} +8 -8
- package/dist/chunks/{chunk-4WXFQOYV.js → chunk-F7O56DVR.js} +2 -2
- package/dist/chunks/{chunk-RLCYVZ4B.js → chunk-FBPAX5K6.js} +1 -1
- package/dist/chunks/{chunk-5WB7O7IT.js → chunk-FNDNSDKW.js} +1 -1
- package/dist/chunks/{chunk-T3H5ELLA.js → chunk-FU57ZNRQ.js} +1 -1
- package/dist/chunks/{chunk-D3E7AXBB.js → chunk-G7SG4XMK.js} +23 -6
- package/dist/chunks/{chunk-HV35LDYH.js → chunk-HMEAGAGC.js} +1 -1
- package/dist/chunks/{chunk-7OTWJQGA.js → chunk-HTF32WSW.js} +4 -4
- package/dist/chunks/{chunk-2XEAITWM.js → chunk-I5SGYTRM.js} +1 -1
- package/dist/chunks/{chunk-6YRSOL4K.js → chunk-IN4IYSA2.js} +1 -1
- package/dist/chunks/{chunk-C6E6HXP5.js → chunk-J6XHW4KI.js} +2 -2
- package/dist/chunks/{chunk-KZMSSPS6.js → chunk-JGH2V54E.js} +1 -1
- package/dist/chunks/{chunk-OUM54ZSQ.js → chunk-JLIVX2SF.js} +1 -1
- package/dist/chunks/{chunk-EIY2SKD3.js → chunk-LG2UK4MB.js} +2 -1
- package/dist/chunks/{chunk-XXOBCANT.js → chunk-LKQOIPGE.js} +8 -8
- package/dist/chunks/{chunk-F3KQQDKP.js → chunk-OXW5OHYQ.js} +1 -1
- package/dist/chunks/{chunk-GZ36HNPJ.js → chunk-PCHEUVHB.js} +1 -1
- package/dist/chunks/{chunk-VO6FKNZE.js → chunk-PJWLYGRL.js} +1 -1
- package/dist/chunks/{chunk-56L6R6D2.js → chunk-Q7I563MH.js} +1 -1
- package/dist/chunks/{chunk-NXBW6KY6.js → chunk-RB2MDFQU.js} +2 -2
- package/dist/chunks/{chunk-ROLACYCO.js → chunk-RK7ZOFPR.js} +12 -12
- package/dist/chunks/{chunk-QCOVHLJO.js → chunk-RT4K2JMZ.js} +1 -1
- package/dist/chunks/{chunk-3FWNQNF7.js → chunk-SACSQ45G.js} +1 -1
- package/dist/chunks/{chunk-P5PBJONQ.js → chunk-SENPGW4O.js} +1 -1
- package/dist/chunks/{chunk-TXTSE44S.js → chunk-TCSV3II7.js} +1 -1
- package/dist/chunks/chunk-TLWXLNLY.js +124 -0
- package/dist/chunks/{chunk-2C5SATRZ.js → chunk-TUMJNAOL.js} +1 -1
- package/dist/chunks/{chunk-JGQQAUVL.js → chunk-UV2IJMIG.js} +2 -2
- package/dist/chunks/{chunk-JGHZ3N34.js → chunk-VB4IXIPM.js} +2 -2
- package/dist/chunks/{chunk-DZR37KXT.js → chunk-VSSIYQYF.js} +1 -1
- package/dist/chunks/{chunk-QD35GH4C.js → chunk-WUZH2OJ6.js} +2 -2
- package/dist/chunks/{chunk-OYCQVJYY.js → chunk-XTF2VWJN.js} +1 -1
- package/dist/chunks/{chunk-SVVFWTG4.js → chunk-ZKSC7QVE.js} +1 -1
- package/dist/cli/figure.js +32 -31
- package/dist/cli/fold.js +7 -6
- package/dist/deletionEdges.js +2 -1
- package/dist/figure.js +27 -26
- package/dist/figureData.js +26 -25
- package/dist/figureScene.js +19 -18
- package/dist/figureSettings.js +8 -7
- package/dist/gbzCut.js +4 -4
- package/dist/gbzWindow.js +3 -3
- package/dist/gfa/gfaConverter.js +2 -2
- package/dist/gfa/gfaTables.js +2 -2
- package/dist/gfa/graphTables.js +2 -2
- package/dist/gfa/walkStops.js +1 -1
- package/dist/graphLabels.js +3 -2
- package/dist/index.js +42 -41
- package/dist/labelLayout.js +7 -6
- package/dist/layout/forceCache.js +8 -7
- package/dist/layout/trimToWindow.js +9 -101
- package/dist/layout/tubeMapLayout.js +9 -8
- package/dist/layout/walkRowDraw.js +10 -7
- package/dist/layout/walkRowLayout.js +5 -5
- package/dist/layout/walkRowRuns.js +3 -3
- package/dist/layout/walkRows.js +4 -4
- package/dist/layout/walkStrip.js +13 -12
- package/dist/layoutModes.js +11 -10
- package/dist/pathColors.js +4 -3
- package/dist/pipeline.js +7 -6
- package/dist/referenceStrip.js +7 -6
- package/dist/renderer/GeometryBuilder.js +6 -5
- package/dist/tubeMap/axis.js +4 -3
- package/dist/tubeMap/bundle.js +10 -9
- package/dist/tubeMap/coarsen.js +10 -9
- package/dist/tubeMap/deviations.js +11 -10
- package/dist/tubeMap/draw.js +5 -5
- package/dist/tubeMap/genes.js +5 -4
- package/dist/tubeMap/nodeColors.js +7 -6
- package/dist/types/deletionEdges.d.ts +1 -1
- package/dist/types/gfa/graphTables.d.ts +2 -0
- package/dist/types/gfa/walkStops.d.ts +1 -1
- package/dist/types/layout/trimToWindow.d.ts +1 -0
- package/dist/types/layout/walkRowDraw.d.ts +2 -1
- package/dist/types/layout/walkRows.d.ts +1 -0
- package/dist/types/types.d.ts +8 -0
- package/dist/types/version.d.ts +1 -1
- package/dist/util/SpatialIndex.js +4 -3
- package/dist/util/edgeCurves.js +3 -2
- package/dist/util/hitDetection.js +5 -4
- package/dist/version.js +1 -1
- package/dist/viewport.js +8 -7
- package/dist/walkEncoding.js +7 -6
- package/dist/walkHighlight.js +9 -8
- package/dist/walkKey.js +5 -4
- package/package.json +1 -1
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CHANGED
|
@@ -10,22 +10,23 @@ import {
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10
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|
} from "../chunks/chunk-KJDERUQF.js";
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|
import {
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|
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|
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} from "../chunks/chunk-
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import "../chunks/chunk-OPPVSPEF.js";
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import "../chunks/chunk-VPE4AYP7.js";
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import "../chunks/chunk-
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import "../chunks/chunk-TUMJNAOL.js";
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import "../chunks/chunk-
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|
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|
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import "../chunks/chunk-
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import "../chunks/chunk-
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package/dist/deletionEdges.js
CHANGED
|
@@ -3,7 +3,8 @@ import {
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|
3
3
|
deletionDrawing,
|
|
4
4
|
deletionEdges,
|
|
5
5
|
edgeCurvesOf
|
|
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|
-
} from "./chunks/chunk-
|
|
6
|
+
} from "./chunks/chunk-5NZRT7GL.js";
|
|
7
|
+
import "./chunks/chunk-TLWXLNLY.js";
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|
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|
import "./chunks/chunk-VACK24HF.js";
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|
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|
package/dist/figure.js
CHANGED
|
@@ -1,55 +1,56 @@
|
|
|
1
1
|
import {
|
|
2
2
|
figureSvg
|
|
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|
-
} from "./chunks/chunk-
|
|
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|
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import "./chunks/chunk-
|
|
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|
+
} from "./chunks/chunk-RK7ZOFPR.js";
|
|
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|
+
import "./chunks/chunk-F7O56DVR.js";
|
|
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5
|
import "./chunks/chunk-4DMSPNYV.js";
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|
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|
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import "./chunks/chunk-
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|
+
import "./chunks/chunk-6XDTAKO7.js";
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|
import "./chunks/chunk-JSUCGZ6K.js";
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|
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|
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import "./chunks/chunk-
|
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import "./chunks/chunk-
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|
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import "./chunks/chunk-APLWFV4I.js";
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|
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import "./chunks/chunk-I5SGYTRM.js";
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|
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|
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|
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import "./chunks/chunk-
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|
+
import "./chunks/chunk-UV2IJMIG.js";
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|
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import "./chunks/chunk-
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import "./chunks/chunk-
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|
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import "./chunks/chunk-SENPGW4O.js";
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import "./chunks/chunk-BXE3SBBN.js";
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|
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import "./chunks/chunk-G7SG4XMK.js";
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|
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import "./chunks/chunk-3UGWYQNY.js";
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|
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import "./chunks/chunk-
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import "./chunks/chunk-
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|
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import "./chunks/chunk-SACSQ45G.js";
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import "./chunks/chunk-HTF32WSW.js";
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|
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|
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|
import "./chunks/chunk-CKUVEHSS.js";
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|
import "./chunks/chunk-VPE4AYP7.js";
|
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|
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import "./chunks/chunk-
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|
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|
+
import "./chunks/chunk-TUMJNAOL.js";
|
|
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|
import "./chunks/chunk-QYBZZI5H.js";
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|
import "./chunks/chunk-CFXXFHRK.js";
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|
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|
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import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-7L7MN2OM.js";
|
|
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|
import "./chunks/chunk-VX656OAZ.js";
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|
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|
import "./chunks/chunk-5ORP7EFJ.js";
|
|
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|
-
import "./chunks/chunk-
|
|
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|
-
import "./chunks/chunk-
|
|
45
|
-
import "./chunks/chunk-
|
|
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|
+
import "./chunks/chunk-VSSIYQYF.js";
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|
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|
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import "./chunks/chunk-LG2UK4MB.js";
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|
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|
+
import "./chunks/chunk-FU57ZNRQ.js";
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|
import "./chunks/chunk-HMXCN6PG.js";
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|
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|
import "./chunks/chunk-AB35TJST.js";
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|
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48
|
import "./chunks/chunk-2VMKQKVO.js";
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|
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49
|
import "./chunks/chunk-HKYXWZQS.js";
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|
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|
import "./chunks/chunk-34BOZKIE.js";
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|
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51
|
import "./chunks/chunk-JKJWSY4V.js";
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|
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|
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import "./chunks/chunk-
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|
+
import "./chunks/chunk-5NZRT7GL.js";
|
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|
+
import "./chunks/chunk-TLWXLNLY.js";
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|
import "./chunks/chunk-3YBP46PB.js";
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|
import "./chunks/chunk-VACK24HF.js";
|
|
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|
import "./chunks/chunk-CPMHA4W5.js";
|
package/dist/figureData.js
CHANGED
|
@@ -3,10 +3,10 @@ import {
|
|
|
3
3
|
gfaFigureData,
|
|
4
4
|
laidOutGraph,
|
|
5
5
|
walkLayers
|
|
6
|
-
} from "./chunks/chunk-
|
|
6
|
+
} from "./chunks/chunk-LKQOIPGE.js";
|
|
7
7
|
import "./chunks/chunk-CO6RGQAD.js";
|
|
8
|
-
import "./chunks/chunk-
|
|
9
|
-
import "./chunks/chunk-
|
|
8
|
+
import "./chunks/chunk-WUZH2OJ6.js";
|
|
9
|
+
import "./chunks/chunk-RB2MDFQU.js";
|
|
10
10
|
import "./chunks/chunk-SDI6BVG7.js";
|
|
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11
|
import "./chunks/chunk-XR2HMGAS.js";
|
|
12
12
|
import "./chunks/chunk-GJLZ2MKE.js";
|
|
@@ -14,48 +14,49 @@ import "./chunks/chunk-MYLAJDKB.js";
|
|
|
14
14
|
import "./chunks/chunk-5OJZV6YT.js";
|
|
15
15
|
import "./chunks/chunk-UAFATXYA.js";
|
|
16
16
|
import "./chunks/chunk-3GLG3ZLE.js";
|
|
17
|
-
import "./chunks/chunk-
|
|
18
|
-
import "./chunks/chunk-
|
|
17
|
+
import "./chunks/chunk-FNDNSDKW.js";
|
|
18
|
+
import "./chunks/chunk-ZKSC7QVE.js";
|
|
19
19
|
import "./chunks/chunk-HNWJ4B7S.js";
|
|
20
20
|
import "./chunks/chunk-BFUS3ENH.js";
|
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|
-
import "./chunks/chunk-
|
|
22
|
-
import "./chunks/chunk-
|
|
23
|
-
import "./chunks/chunk-
|
|
21
|
+
import "./chunks/chunk-TCSV3II7.js";
|
|
22
|
+
import "./chunks/chunk-FBPAX5K6.js";
|
|
23
|
+
import "./chunks/chunk-EZGNBDHD.js";
|
|
24
24
|
import "./chunks/chunk-LOCJN3BZ.js";
|
|
25
|
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