@jbrowse/bandage-core 11.6.1 → 11.7.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (99) hide show
  1. package/dist/bubbles/bubbleHalos.js +5 -4
  2. package/dist/bubbles/classifyBubble.js +4 -3
  3. package/dist/bubbles/superbubbles.js +6 -5
  4. package/dist/chunks/{chunk-BW2NMXRV.js → chunk-3UGWYQNY.js} +1 -1
  5. package/dist/chunks/{chunk-YEYQFNFQ.js → chunk-3WSA4NNP.js} +1 -1
  6. package/dist/chunks/{chunk-SNF2MIEF.js → chunk-3Y2EFDID.js} +1 -1
  7. package/dist/chunks/{chunk-DV5B5UU7.js → chunk-5NZRT7GL.js} +5 -1
  8. package/dist/chunks/{chunk-MXLYBDOX.js → chunk-6XDTAKO7.js} +13 -7
  9. package/dist/chunks/{chunk-W2YAW36J.js → chunk-7L7MN2OM.js} +5 -2
  10. package/dist/chunks/{chunk-EVXXFMZ7.js → chunk-APLWFV4I.js} +3 -3
  11. package/dist/chunks/{chunk-KA4F3N55.js → chunk-ATDVS2CW.js} +2 -2
  12. package/dist/chunks/{chunk-MEVTV4FI.js → chunk-BXE3SBBN.js} +1 -1
  13. package/dist/chunks/{chunk-WI6SUU5B.js → chunk-CWCVQJYY.js} +1 -1
  14. package/dist/chunks/{chunk-BVWMVWLJ.js → chunk-EZGNBDHD.js} +8 -8
  15. package/dist/chunks/{chunk-4WXFQOYV.js → chunk-F7O56DVR.js} +2 -2
  16. package/dist/chunks/{chunk-RLCYVZ4B.js → chunk-FBPAX5K6.js} +1 -1
  17. package/dist/chunks/{chunk-5WB7O7IT.js → chunk-FNDNSDKW.js} +1 -1
  18. package/dist/chunks/{chunk-T3H5ELLA.js → chunk-FU57ZNRQ.js} +1 -1
  19. package/dist/chunks/{chunk-D3E7AXBB.js → chunk-G7SG4XMK.js} +23 -6
  20. package/dist/chunks/{chunk-HV35LDYH.js → chunk-HMEAGAGC.js} +1 -1
  21. package/dist/chunks/{chunk-7OTWJQGA.js → chunk-HTF32WSW.js} +4 -4
  22. package/dist/chunks/{chunk-2XEAITWM.js → chunk-I5SGYTRM.js} +1 -1
  23. package/dist/chunks/{chunk-6YRSOL4K.js → chunk-IN4IYSA2.js} +1 -1
  24. package/dist/chunks/{chunk-C6E6HXP5.js → chunk-J6XHW4KI.js} +2 -2
  25. package/dist/chunks/{chunk-KZMSSPS6.js → chunk-JGH2V54E.js} +1 -1
  26. package/dist/chunks/{chunk-OUM54ZSQ.js → chunk-JLIVX2SF.js} +1 -1
  27. package/dist/chunks/{chunk-EIY2SKD3.js → chunk-LG2UK4MB.js} +2 -1
  28. package/dist/chunks/{chunk-XXOBCANT.js → chunk-LKQOIPGE.js} +8 -8
  29. package/dist/chunks/{chunk-F3KQQDKP.js → chunk-OXW5OHYQ.js} +1 -1
  30. package/dist/chunks/{chunk-GZ36HNPJ.js → chunk-PCHEUVHB.js} +1 -1
  31. package/dist/chunks/{chunk-VO6FKNZE.js → chunk-PJWLYGRL.js} +1 -1
  32. package/dist/chunks/{chunk-56L6R6D2.js → chunk-Q7I563MH.js} +1 -1
  33. package/dist/chunks/{chunk-NXBW6KY6.js → chunk-RB2MDFQU.js} +2 -2
  34. package/dist/chunks/{chunk-ROLACYCO.js → chunk-RK7ZOFPR.js} +12 -12
  35. package/dist/chunks/{chunk-QCOVHLJO.js → chunk-RT4K2JMZ.js} +1 -1
  36. package/dist/chunks/{chunk-3FWNQNF7.js → chunk-SACSQ45G.js} +1 -1
  37. package/dist/chunks/{chunk-P5PBJONQ.js → chunk-SENPGW4O.js} +1 -1
  38. package/dist/chunks/{chunk-TXTSE44S.js → chunk-TCSV3II7.js} +1 -1
  39. package/dist/chunks/chunk-TLWXLNLY.js +124 -0
  40. package/dist/chunks/{chunk-2C5SATRZ.js → chunk-TUMJNAOL.js} +1 -1
  41. package/dist/chunks/{chunk-JGQQAUVL.js → chunk-UV2IJMIG.js} +2 -2
  42. package/dist/chunks/{chunk-JGHZ3N34.js → chunk-VB4IXIPM.js} +2 -2
  43. package/dist/chunks/{chunk-DZR37KXT.js → chunk-VSSIYQYF.js} +1 -1
  44. package/dist/chunks/{chunk-QD35GH4C.js → chunk-WUZH2OJ6.js} +2 -2
  45. package/dist/chunks/{chunk-OYCQVJYY.js → chunk-XTF2VWJN.js} +1 -1
  46. package/dist/chunks/{chunk-SVVFWTG4.js → chunk-ZKSC7QVE.js} +1 -1
  47. package/dist/cli/figure.js +32 -31
  48. package/dist/cli/fold.js +7 -6
  49. package/dist/deletionEdges.js +2 -1
  50. package/dist/figure.js +27 -26
  51. package/dist/figureData.js +26 -25
  52. package/dist/figureScene.js +19 -18
  53. package/dist/figureSettings.js +8 -7
  54. package/dist/gbzCut.js +4 -4
  55. package/dist/gbzWindow.js +3 -3
  56. package/dist/gfa/gfaConverter.js +2 -2
  57. package/dist/gfa/gfaTables.js +2 -2
  58. package/dist/gfa/graphTables.js +2 -2
  59. package/dist/gfa/walkStops.js +1 -1
  60. package/dist/graphLabels.js +3 -2
  61. package/dist/index.js +42 -41
  62. package/dist/labelLayout.js +7 -6
  63. package/dist/layout/forceCache.js +8 -7
  64. package/dist/layout/trimToWindow.js +9 -101
  65. package/dist/layout/tubeMapLayout.js +9 -8
  66. package/dist/layout/walkRowDraw.js +10 -7
  67. package/dist/layout/walkRowLayout.js +5 -5
  68. package/dist/layout/walkRowRuns.js +3 -3
  69. package/dist/layout/walkRows.js +4 -4
  70. package/dist/layout/walkStrip.js +13 -12
  71. package/dist/layoutModes.js +11 -10
  72. package/dist/pathColors.js +4 -3
  73. package/dist/pipeline.js +7 -6
  74. package/dist/referenceStrip.js +7 -6
  75. package/dist/renderer/GeometryBuilder.js +6 -5
  76. package/dist/tubeMap/axis.js +4 -3
  77. package/dist/tubeMap/bundle.js +10 -9
  78. package/dist/tubeMap/coarsen.js +10 -9
  79. package/dist/tubeMap/deviations.js +11 -10
  80. package/dist/tubeMap/draw.js +5 -5
  81. package/dist/tubeMap/genes.js +5 -4
  82. package/dist/tubeMap/nodeColors.js +7 -6
  83. package/dist/types/deletionEdges.d.ts +1 -1
  84. package/dist/types/gfa/graphTables.d.ts +2 -0
  85. package/dist/types/gfa/walkStops.d.ts +1 -1
  86. package/dist/types/layout/trimToWindow.d.ts +1 -0
  87. package/dist/types/layout/walkRowDraw.d.ts +2 -1
  88. package/dist/types/layout/walkRows.d.ts +1 -0
  89. package/dist/types/types.d.ts +8 -0
  90. package/dist/types/version.d.ts +1 -1
  91. package/dist/util/SpatialIndex.js +4 -3
  92. package/dist/util/edgeCurves.js +3 -2
  93. package/dist/util/hitDetection.js +5 -4
  94. package/dist/version.js +1 -1
  95. package/dist/viewport.js +8 -7
  96. package/dist/walkEncoding.js +7 -6
  97. package/dist/walkHighlight.js +9 -8
  98. package/dist/walkKey.js +5 -4
  99. package/package.json +1 -1
@@ -2,7 +2,7 @@ import {
2
2
  stripGeneGaps,
3
3
  walkStripFrame,
4
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  walkStripLabelsTree
5
- } from "./chunk-4WXFQOYV.js";
5
+ } from "./chunk-F7O56DVR.js";
6
6
  import {
7
7
  Canvas2DRenderer
8
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  } from "./chunk-4DMSPNYV.js";
@@ -13,7 +13,7 @@ import {
13
13
  walkRowsKey,
14
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  walkRowsKeyTree,
15
15
  walkRowsTree
16
- } from "./chunk-MXLYBDOX.js";
16
+ } from "./chunk-6XDTAKO7.js";
17
17
  import {
18
18
  EXON_COLOR,
19
19
  exonOutlineTree,
@@ -21,10 +21,10 @@ import {
21
21
  } from "./chunk-JSUCGZ6K.js";
22
22
  import {
23
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  geneLabelCandidates
24
- } from "./chunk-KA4F3N55.js";
24
+ } from "./chunk-ATDVS2CW.js";
25
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  import {
26
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  nodesUnderBox
27
- } from "./chunk-56L6R6D2.js";
27
+ } from "./chunk-Q7I563MH.js";
28
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  import {
29
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  escapeAttr,
30
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  serializeEl
@@ -34,32 +34,32 @@ import {
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34
  } from "./chunk-BFUS3ENH.js";
35
35
  import {
36
36
  version
37
- } from "./chunk-TXTSE44S.js";
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+ } from "./chunk-TCSV3II7.js";
38
38
  import {
39
39
  axisScaleOf
40
- } from "./chunk-RLCYVZ4B.js";
40
+ } from "./chunk-FBPAX5K6.js";
41
41
  import {
42
42
  figureScene
43
- } from "./chunk-BVWMVWLJ.js";
43
+ } from "./chunk-EZGNBDHD.js";
44
44
  import {
45
45
  encodingStops
46
- } from "./chunk-2XEAITWM.js";
46
+ } from "./chunk-I5SGYTRM.js";
47
47
  import {
48
48
  rangeText
49
- } from "./chunk-JGQQAUVL.js";
49
+ } from "./chunk-UV2IJMIG.js";
50
50
  import {
51
51
  walkRowLabels
52
- } from "./chunk-P5PBJONQ.js";
52
+ } from "./chunk-SENPGW4O.js";
53
53
  import {
54
54
  nodeInk
55
55
  } from "./chunk-ZANALBSX.js";
56
56
  import {
57
57
  FIGURE_DEFAULTS
58
- } from "./chunk-3FWNQNF7.js";
58
+ } from "./chunk-SACSQ45G.js";
59
59
  import {
60
60
  FIT_PADDING,
61
61
  fitTransform
62
- } from "./chunk-7OTWJQGA.js";
62
+ } from "./chunk-HTF32WSW.js";
63
63
  import {
64
64
  LABEL_CHAR_PX,
65
65
  LABEL_PAD,
@@ -2,7 +2,7 @@ import {
2
2
  LIFT_BACKDROP_CSS,
3
3
  computeColorSchemeRange,
4
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  getNodeColor
5
- } from "./chunk-JGHZ3N34.js";
5
+ } from "./chunk-VB4IXIPM.js";
6
6
  import {
7
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  abgrToCssRgba
8
8
  } from "./chunk-G2FD7S3C.js";
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  ENGINE_DEFAULTS
3
- } from "./chunk-7OTWJQGA.js";
3
+ } from "./chunk-HTF32WSW.js";
4
4
 
5
5
  // src/figureSettings.ts
6
6
  var FIGURE_DEFAULTS = {
@@ -1,6 +1,6 @@
1
1
  import {
2
2
  walkRows
3
- } from "./chunk-MEVTV4FI.js";
3
+ } from "./chunk-BXE3SBBN.js";
4
4
  import {
5
5
  ROW_HEIGHT_PX
6
6
  } from "./chunk-CPMHA4W5.js";
@@ -1,5 +1,5 @@
1
1
  // src/version.ts
2
- var version = "11.6.1";
2
+ var version = "11.7.1";
3
3
 
4
4
  export {
5
5
  version
@@ -0,0 +1,124 @@
1
+ import {
2
+ pathOrigin,
3
+ trimOrigins
4
+ } from "./chunk-3YBP46PB.js";
5
+ import {
6
+ PathVisitsBuilder
7
+ } from "./chunk-ZPZ7GNBT.js";
8
+ import {
9
+ isBackbone,
10
+ overlapsWindow
11
+ } from "./chunk-RJWPJCIB.js";
12
+
13
+ // src/layout/trimToWindow.ts
14
+ function trimToWindow(graph, window) {
15
+ const inWindow = new Set(
16
+ graph.nodes.filter((n) => isBackbone(n) && overlapsWindow(n, window)).map((n) => n.id)
17
+ );
18
+ const paths = graph.paths ?? [];
19
+ if (inWindow.size === 0 || paths.length === 0) {
20
+ return graph;
21
+ }
22
+ const spans = paths.map((path) => {
23
+ let first = -1;
24
+ let last = -1;
25
+ path.nodeIds.forEach((id, i) => {
26
+ if (inWindow.has(id)) {
27
+ if (first < 0) {
28
+ first = i;
29
+ }
30
+ last = i;
31
+ }
32
+ });
33
+ return first < 0 ? void 0 : { first, last };
34
+ });
35
+ if (spans.every(
36
+ (span, i) => span?.first === 0 && span.last === paths[i].nodeIds.length - 1
37
+ )) {
38
+ return graph;
39
+ }
40
+ const kept = /* @__PURE__ */ new Set();
41
+ const trimmed = [];
42
+ const stretches = /* @__PURE__ */ new Map();
43
+ paths.forEach((path, i) => {
44
+ const span = spans[i];
45
+ if (span) {
46
+ const nodeIds = path.nodeIds.slice(span.first, span.last + 1);
47
+ for (const id of nodeIds) {
48
+ kept.add(id);
49
+ }
50
+ trimmed.push({ ...path, nodeIds });
51
+ stretches.set(path.name, { first: span.first, nodeIds });
52
+ }
53
+ });
54
+ return {
55
+ ...graph,
56
+ nodes: graph.nodes.filter((n) => kept.has(n.id)),
57
+ edges: graph.edges.filter((e) => kept.has(e.from) && kept.has(e.to)),
58
+ paths: trimmed,
59
+ pathVisits: graph.pathVisits && trimVisits(
60
+ graph.pathVisits,
61
+ paths,
62
+ spans,
63
+ new Map(graph.nodes.map((n) => [n.id, n.name]))
64
+ ),
65
+ anchorPaths: trimOrigins(graph, stretches)
66
+ };
67
+ }
68
+ function trimVisits(visits, paths, spans, nameOf) {
69
+ const next = visits.replay();
70
+ const out = new PathVisitsBuilder();
71
+ paths.forEach((path, p) => {
72
+ const origin = visits.pathIndex(pathOrigin(path.name).name);
73
+ const span = spans[p];
74
+ path.nodeIds.forEach((id, i) => {
75
+ const segment = nameOf.get(id) ?? id;
76
+ const at = next(visits.slot(segment), origin);
77
+ if (at >= 0 && span && i >= span.first && i <= span.last) {
78
+ out.add(
79
+ segment,
80
+ visits.paths[origin],
81
+ visits.samples[origin],
82
+ visits.start[at],
83
+ visits.reversed[at] === 1
84
+ );
85
+ }
86
+ });
87
+ });
88
+ return out.build();
89
+ }
90
+ function clipToWindow(graph, window, reachBp) {
91
+ const nodes = graph.nodes.map((node) => {
92
+ if (!isBackbone(node)) {
93
+ return node;
94
+ }
95
+ const from = node.stable.start;
96
+ const to = from + node.length;
97
+ const [start, end] = overlapsWindow(node, window) ? [Math.max(from, window.start), Math.min(to, window.end)] : to <= window.start ? [Math.max(from, to - reachBp), to] : [from, Math.min(to, from + reachBp)];
98
+ return start === from && end === to ? node : {
99
+ ...node,
100
+ length: end - start,
101
+ stable: { ...node.stable, start },
102
+ unclipped: { start: from, length: node.length }
103
+ };
104
+ });
105
+ return nodes.some((node, i) => node !== graph.nodes[i]) ? { ...graph, nodes } : graph;
106
+ }
107
+ function unclipped(graph) {
108
+ return graph.nodes.some((n) => n.unclipped) ? {
109
+ ...graph,
110
+ nodes: graph.nodes.map(
111
+ ({ unclipped: full, ...node }) => full && node.stable ? {
112
+ ...node,
113
+ length: full.length,
114
+ stable: { ...node.stable, start: full.start }
115
+ } : node
116
+ )
117
+ } : graph;
118
+ }
119
+
120
+ export {
121
+ trimToWindow,
122
+ clipToWindow,
123
+ unclipped
124
+ };
@@ -3,7 +3,7 @@ import {
3
3
  } from "./chunk-CFXXFHRK.js";
4
4
  import {
5
5
  walkStopFields
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- } from "./chunk-EIY2SKD3.js";
6
+ } from "./chunk-LG2UK4MB.js";
7
7
  import {
8
8
  pathOrigin,
9
9
  surveyPaths
@@ -1,11 +1,11 @@
1
1
  import {
2
2
  GAP_CAUSE_TEXT,
3
3
  OUTSIDE_TEXT
4
- } from "./chunk-EIY2SKD3.js";
4
+ } from "./chunk-LG2UK4MB.js";
5
5
  import {
6
6
  formatBp,
7
7
  groupDigits
8
- } from "./chunk-T3H5ELLA.js";
8
+ } from "./chunk-FU57ZNRQ.js";
9
9
 
10
10
  // src/walkKey.ts
11
11
  function rangeText(contig, start, end) {
@@ -10,13 +10,13 @@ import {
10
10
  } from "./chunk-GQZVR5DW.js";
11
11
  import {
12
12
  baseEdgeCurves
13
- } from "./chunk-OYCQVJYY.js";
13
+ } from "./chunk-XTF2VWJN.js";
14
14
  import {
15
15
  PATH_LIGHTNESS,
16
16
  PATH_SATURATION,
17
17
  nameHue,
18
18
  pathHueAt
19
- } from "./chunk-BW2NMXRV.js";
19
+ } from "./chunk-3UGWYQNY.js";
20
20
  import {
21
21
  meanDepth,
22
22
  nodeWidthPx,
@@ -3,7 +3,7 @@ import {
3
3
  START_STOP_TAG,
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  StopColumns,
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5
  parseStopTag
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- } from "./chunk-EIY2SKD3.js";
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+ } from "./chunk-LG2UK4MB.js";
7
7
  import {
8
8
  Column
9
9
  } from "./chunk-ZPZ7GNBT.js";
@@ -3,7 +3,7 @@ import {
3
3
  hasTubeMapPaths,
4
4
  tubeMapLayout,
5
5
  tubeMapReferenceLayout
6
- } from "./chunk-NXBW6KY6.js";
6
+ } from "./chunk-RB2MDFQU.js";
7
7
  import {
8
8
  sampleRowLayout
9
9
  } from "./chunk-XR2HMGAS.js";
@@ -15,7 +15,7 @@ import {
15
15
  } from "./chunk-UAFATXYA.js";
16
16
  import {
17
17
  walkRowLayout
18
- } from "./chunk-P5PBJONQ.js";
18
+ } from "./chunk-SENPGW4O.js";
19
19
  import {
20
20
  isBackbone,
21
21
  isOffReference
@@ -3,7 +3,7 @@ import {
3
3
  } from "./chunk-HMXCN6PG.js";
4
4
  import {
5
5
  edgeCurvesOf
6
- } from "./chunk-DV5B5UU7.js";
6
+ } from "./chunk-5NZRT7GL.js";
7
7
 
8
8
  // src/util/edgeCurves.ts
9
9
  var cache = weakMemo();
@@ -6,7 +6,7 @@ import {
6
6
  } from "./chunk-5ORP7EFJ.js";
7
7
  import {
8
8
  gfaTables
9
- } from "./chunk-DZR37KXT.js";
9
+ } from "./chunk-VSSIYQYF.js";
10
10
  import {
11
11
  panSNMatchesPrefix,
12
12
  panSNSample
@@ -8,32 +8,32 @@ import {
8
8
  import "../chunks/chunk-EQDQ7P4Y.js";
9
9
  import {
10
10
  figureSvg
11
- } from "../chunks/chunk-ROLACYCO.js";
12
- import "../chunks/chunk-4WXFQOYV.js";
11
+ } from "../chunks/chunk-RK7ZOFPR.js";
12
+ import "../chunks/chunk-F7O56DVR.js";
13
13
  import "../chunks/chunk-4DMSPNYV.js";
14
14
  import "../chunks/chunk-RBCE2OQH.js";
15
15
  import "../chunks/chunk-V4YML3GR.js";
16
16
  import {
17
17
  genesOnRow,
18
18
  placeRowGenes
19
- } from "../chunks/chunk-MXLYBDOX.js";
19
+ } from "../chunks/chunk-6XDTAKO7.js";
20
20
  import "../chunks/chunk-JSUCGZ6K.js";
21
- import "../chunks/chunk-KA4F3N55.js";
22
- import "../chunks/chunk-56L6R6D2.js";
23
- import "../chunks/chunk-6YRSOL4K.js";
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+ import "../chunks/chunk-ATDVS2CW.js";
22
+ import "../chunks/chunk-Q7I563MH.js";
23
+ import "../chunks/chunk-IN4IYSA2.js";
24
24
  import "../chunks/chunk-H2H4Y3TV.js";
25
25
  import {
26
26
  laidOutGraph,
27
27
  walkLayers
28
- } from "../chunks/chunk-XXOBCANT.js";
28
+ } from "../chunks/chunk-LKQOIPGE.js";
29
29
  import {
30
30
  LAYOUT_ENGINE_VALUES,
31
31
  isLayoutEngineKind
32
32
  } from "../chunks/chunk-CO6RGQAD.js";
33
33
  import {
34
34
  LAYOUT_MODES
35
- } from "../chunks/chunk-QD35GH4C.js";
36
- import "../chunks/chunk-NXBW6KY6.js";
35
+ } from "../chunks/chunk-WUZH2OJ6.js";
36
+ import "../chunks/chunk-RB2MDFQU.js";
37
37
  import "../chunks/chunk-SDI6BVG7.js";
38
38
  import "../chunks/chunk-XR2HMGAS.js";
39
39
  import "../chunks/chunk-GJLZ2MKE.js";
@@ -47,51 +47,52 @@ import {
47
47
  haplotypeIndexBeside,
48
48
  openGbz,
49
49
  parseRegion
50
- } from "../chunks/chunk-5WB7O7IT.js";
51
- import "../chunks/chunk-SVVFWTG4.js";
50
+ } from "../chunks/chunk-FNDNSDKW.js";
51
+ import "../chunks/chunk-ZKSC7QVE.js";
52
52
  import "../chunks/chunk-HNWJ4B7S.js";
53
53
  import "../chunks/chunk-BFUS3ENH.js";
54
- import "../chunks/chunk-TXTSE44S.js";
55
- import "../chunks/chunk-RLCYVZ4B.js";
56
- import "../chunks/chunk-BVWMVWLJ.js";
54
+ import "../chunks/chunk-TCSV3II7.js";
55
+ import "../chunks/chunk-FBPAX5K6.js";
56
+ import "../chunks/chunk-EZGNBDHD.js";
57
57
  import "../chunks/chunk-LOCJN3BZ.js";
58
- import "../chunks/chunk-EVXXFMZ7.js";
59
- import "../chunks/chunk-2XEAITWM.js";
60
- import "../chunks/chunk-JGHZ3N34.js";
58
+ import "../chunks/chunk-APLWFV4I.js";
59
+ import "../chunks/chunk-I5SGYTRM.js";
60
+ import "../chunks/chunk-VB4IXIPM.js";
61
61
  import "../chunks/chunk-G2FD7S3C.js";
62
- import "../chunks/chunk-JGQQAUVL.js";
62
+ import "../chunks/chunk-UV2IJMIG.js";
63
63
  import "../chunks/chunk-GQZVR5DW.js";
64
- import "../chunks/chunk-OYCQVJYY.js";
65
- import "../chunks/chunk-P5PBJONQ.js";
64
+ import "../chunks/chunk-XTF2VWJN.js";
65
+ import "../chunks/chunk-SENPGW4O.js";
66
66
  import {
67
67
  filterSamples,
68
68
  walkRows
69
- } from "../chunks/chunk-MEVTV4FI.js";
70
- import "../chunks/chunk-D3E7AXBB.js";
71
- import "../chunks/chunk-BW2NMXRV.js";
69
+ } from "../chunks/chunk-BXE3SBBN.js";
70
+ import "../chunks/chunk-G7SG4XMK.js";
71
+ import "../chunks/chunk-3UGWYQNY.js";
72
72
  import "../chunks/chunk-ZANALBSX.js";
73
- import "../chunks/chunk-3FWNQNF7.js";
74
- import "../chunks/chunk-7OTWJQGA.js";
73
+ import "../chunks/chunk-SACSQ45G.js";
74
+ import "../chunks/chunk-HTF32WSW.js";
75
75
  import "../chunks/chunk-OPPVSPEF.js";
76
76
  import "../chunks/chunk-3PZSBNLI.js";
77
77
  import "../chunks/chunk-CKUVEHSS.js";
78
78
  import "../chunks/chunk-VPE4AYP7.js";
79
- import "../chunks/chunk-2C5SATRZ.js";
79
+ import "../chunks/chunk-TUMJNAOL.js";
80
80
  import "../chunks/chunk-QYBZZI5H.js";
81
81
  import "../chunks/chunk-CFXXFHRK.js";
82
- import "../chunks/chunk-W2YAW36J.js";
82
+ import "../chunks/chunk-7L7MN2OM.js";
83
83
  import "../chunks/chunk-VX656OAZ.js";
84
84
  import "../chunks/chunk-5ORP7EFJ.js";
85
- import "../chunks/chunk-DZR37KXT.js";
86
- import "../chunks/chunk-EIY2SKD3.js";
87
- import "../chunks/chunk-T3H5ELLA.js";
85
+ import "../chunks/chunk-VSSIYQYF.js";
86
+ import "../chunks/chunk-LG2UK4MB.js";
87
+ import "../chunks/chunk-FU57ZNRQ.js";
88
88
  import "../chunks/chunk-HMXCN6PG.js";
89
89
  import "../chunks/chunk-AB35TJST.js";
90
90
  import "../chunks/chunk-2VMKQKVO.js";
91
91
  import "../chunks/chunk-HKYXWZQS.js";
92
92
  import "../chunks/chunk-34BOZKIE.js";
93
93
  import "../chunks/chunk-JKJWSY4V.js";
94
- import "../chunks/chunk-DV5B5UU7.js";
94
+ import "../chunks/chunk-5NZRT7GL.js";
95
+ import "../chunks/chunk-TLWXLNLY.js";
95
96
  import "../chunks/chunk-3YBP46PB.js";
96
97
  import "../chunks/chunk-VACK24HF.js";
97
98
  import "../chunks/chunk-CPMHA4W5.js";
package/dist/cli/fold.js CHANGED
@@ -10,22 +10,23 @@ import {
10
10
  } from "../chunks/chunk-KJDERUQF.js";
11
11
  import {
12
12
  loadGraph
13
- } from "../chunks/chunk-7OTWJQGA.js";
13
+ } from "../chunks/chunk-HTF32WSW.js";
14
14
  import "../chunks/chunk-OPPVSPEF.js";
15
15
  import "../chunks/chunk-3PZSBNLI.js";
16
16
  import "../chunks/chunk-CKUVEHSS.js";
17
17
  import "../chunks/chunk-VPE4AYP7.js";
18
- import "../chunks/chunk-2C5SATRZ.js";
18
+ import "../chunks/chunk-TUMJNAOL.js";
19
19
  import "../chunks/chunk-QYBZZI5H.js";
20
20
  import "../chunks/chunk-CFXXFHRK.js";
21
- import "../chunks/chunk-W2YAW36J.js";
21
+ import "../chunks/chunk-7L7MN2OM.js";
22
22
  import "../chunks/chunk-VX656OAZ.js";
23
- import "../chunks/chunk-DZR37KXT.js";
24
- import "../chunks/chunk-EIY2SKD3.js";
23
+ import "../chunks/chunk-VSSIYQYF.js";
24
+ import "../chunks/chunk-LG2UK4MB.js";
25
25
  import "../chunks/chunk-2VMKQKVO.js";
26
26
  import "../chunks/chunk-HKYXWZQS.js";
27
27
  import "../chunks/chunk-34BOZKIE.js";
28
- import "../chunks/chunk-DV5B5UU7.js";
28
+ import "../chunks/chunk-5NZRT7GL.js";
29
+ import "../chunks/chunk-TLWXLNLY.js";
29
30
  import "../chunks/chunk-3YBP46PB.js";
30
31
  import "../chunks/chunk-VACK24HF.js";
31
32
  import "../chunks/chunk-CPMHA4W5.js";
@@ -3,7 +3,8 @@ import {
3
3
  deletionDrawing,
4
4
  deletionEdges,
5
5
  edgeCurvesOf
6
- } from "./chunks/chunk-DV5B5UU7.js";
6
+ } from "./chunks/chunk-5NZRT7GL.js";
7
+ import "./chunks/chunk-TLWXLNLY.js";
7
8
  import "./chunks/chunk-3YBP46PB.js";
8
9
  import "./chunks/chunk-VACK24HF.js";
9
10
  import "./chunks/chunk-CPMHA4W5.js";
package/dist/figure.js CHANGED
@@ -1,55 +1,56 @@
1
1
  import {
2
2
  figureSvg
3
- } from "./chunks/chunk-ROLACYCO.js";
4
- import "./chunks/chunk-4WXFQOYV.js";
3
+ } from "./chunks/chunk-RK7ZOFPR.js";
4
+ import "./chunks/chunk-F7O56DVR.js";
5
5
  import "./chunks/chunk-4DMSPNYV.js";
6
6
  import "./chunks/chunk-RBCE2OQH.js";
7
7
  import "./chunks/chunk-V4YML3GR.js";
8
- import "./chunks/chunk-MXLYBDOX.js";
8
+ import "./chunks/chunk-6XDTAKO7.js";
9
9
  import "./chunks/chunk-JSUCGZ6K.js";
10
- import "./chunks/chunk-KA4F3N55.js";
11
- import "./chunks/chunk-56L6R6D2.js";
12
- import "./chunks/chunk-6YRSOL4K.js";
10
+ import "./chunks/chunk-ATDVS2CW.js";
11
+ import "./chunks/chunk-Q7I563MH.js";
12
+ import "./chunks/chunk-IN4IYSA2.js";
13
13
  import "./chunks/chunk-H2H4Y3TV.js";
14
14
  import "./chunks/chunk-BFUS3ENH.js";
15
- import "./chunks/chunk-TXTSE44S.js";
16
- import "./chunks/chunk-RLCYVZ4B.js";
17
- import "./chunks/chunk-BVWMVWLJ.js";
15
+ import "./chunks/chunk-TCSV3II7.js";
16
+ import "./chunks/chunk-FBPAX5K6.js";
17
+ import "./chunks/chunk-EZGNBDHD.js";
18
18
  import "./chunks/chunk-LOCJN3BZ.js";
19
- import "./chunks/chunk-EVXXFMZ7.js";
20
- import "./chunks/chunk-2XEAITWM.js";
21
- import "./chunks/chunk-JGHZ3N34.js";
19
+ import "./chunks/chunk-APLWFV4I.js";
20
+ import "./chunks/chunk-I5SGYTRM.js";
21
+ import "./chunks/chunk-VB4IXIPM.js";
22
22
  import "./chunks/chunk-G2FD7S3C.js";
23
- import "./chunks/chunk-JGQQAUVL.js";
23
+ import "./chunks/chunk-UV2IJMIG.js";
24
24
  import "./chunks/chunk-GQZVR5DW.js";
25
- import "./chunks/chunk-OYCQVJYY.js";
26
- import "./chunks/chunk-P5PBJONQ.js";
27
- import "./chunks/chunk-MEVTV4FI.js";
28
- import "./chunks/chunk-D3E7AXBB.js";
29
- import "./chunks/chunk-BW2NMXRV.js";
25
+ import "./chunks/chunk-XTF2VWJN.js";
26
+ import "./chunks/chunk-SENPGW4O.js";
27
+ import "./chunks/chunk-BXE3SBBN.js";
28
+ import "./chunks/chunk-G7SG4XMK.js";
29
+ import "./chunks/chunk-3UGWYQNY.js";
30
30
  import "./chunks/chunk-ZANALBSX.js";
31
- import "./chunks/chunk-3FWNQNF7.js";
32
- import "./chunks/chunk-7OTWJQGA.js";
31
+ import "./chunks/chunk-SACSQ45G.js";
32
+ import "./chunks/chunk-HTF32WSW.js";
33
33
  import "./chunks/chunk-OPPVSPEF.js";
34
34
  import "./chunks/chunk-3PZSBNLI.js";
35
35
  import "./chunks/chunk-CKUVEHSS.js";
36
36
  import "./chunks/chunk-VPE4AYP7.js";
37
- import "./chunks/chunk-2C5SATRZ.js";
37
+ import "./chunks/chunk-TUMJNAOL.js";
38
38
  import "./chunks/chunk-QYBZZI5H.js";
39
39
  import "./chunks/chunk-CFXXFHRK.js";
40
- import "./chunks/chunk-W2YAW36J.js";
40
+ import "./chunks/chunk-7L7MN2OM.js";
41
41
  import "./chunks/chunk-VX656OAZ.js";
42
42
  import "./chunks/chunk-5ORP7EFJ.js";
43
- import "./chunks/chunk-DZR37KXT.js";
44
- import "./chunks/chunk-EIY2SKD3.js";
45
- import "./chunks/chunk-T3H5ELLA.js";
43
+ import "./chunks/chunk-VSSIYQYF.js";
44
+ import "./chunks/chunk-LG2UK4MB.js";
45
+ import "./chunks/chunk-FU57ZNRQ.js";
46
46
  import "./chunks/chunk-HMXCN6PG.js";
47
47
  import "./chunks/chunk-AB35TJST.js";
48
48
  import "./chunks/chunk-2VMKQKVO.js";
49
49
  import "./chunks/chunk-HKYXWZQS.js";
50
50
  import "./chunks/chunk-34BOZKIE.js";
51
51
  import "./chunks/chunk-JKJWSY4V.js";
52
- import "./chunks/chunk-DV5B5UU7.js";
52
+ import "./chunks/chunk-5NZRT7GL.js";
53
+ import "./chunks/chunk-TLWXLNLY.js";
53
54
  import "./chunks/chunk-3YBP46PB.js";
54
55
  import "./chunks/chunk-VACK24HF.js";
55
56
  import "./chunks/chunk-CPMHA4W5.js";
@@ -3,10 +3,10 @@ import {
3
3
  gfaFigureData,
4
4
  laidOutGraph,
5
5
  walkLayers
6
- } from "./chunks/chunk-XXOBCANT.js";
6
+ } from "./chunks/chunk-LKQOIPGE.js";
7
7
  import "./chunks/chunk-CO6RGQAD.js";
8
- import "./chunks/chunk-QD35GH4C.js";
9
- import "./chunks/chunk-NXBW6KY6.js";
8
+ import "./chunks/chunk-WUZH2OJ6.js";
9
+ import "./chunks/chunk-RB2MDFQU.js";
10
10
  import "./chunks/chunk-SDI6BVG7.js";
11
11
  import "./chunks/chunk-XR2HMGAS.js";
12
12
  import "./chunks/chunk-GJLZ2MKE.js";
@@ -14,48 +14,49 @@ import "./chunks/chunk-MYLAJDKB.js";
14
14
  import "./chunks/chunk-5OJZV6YT.js";
15
15
  import "./chunks/chunk-UAFATXYA.js";
16
16
  import "./chunks/chunk-3GLG3ZLE.js";
17
- import "./chunks/chunk-5WB7O7IT.js";
18
- import "./chunks/chunk-SVVFWTG4.js";
17
+ import "./chunks/chunk-FNDNSDKW.js";
18
+ import "./chunks/chunk-ZKSC7QVE.js";
19
19
  import "./chunks/chunk-HNWJ4B7S.js";
20
20
  import "./chunks/chunk-BFUS3ENH.js";
21
- import "./chunks/chunk-TXTSE44S.js";
22
- import "./chunks/chunk-RLCYVZ4B.js";
23
- import "./chunks/chunk-BVWMVWLJ.js";
21
+ import "./chunks/chunk-TCSV3II7.js";
22
+ import "./chunks/chunk-FBPAX5K6.js";
23
+ import "./chunks/chunk-EZGNBDHD.js";
24
24
  import "./chunks/chunk-LOCJN3BZ.js";
25
- import "./chunks/chunk-EVXXFMZ7.js";
26
- import "./chunks/chunk-2XEAITWM.js";
27
- import "./chunks/chunk-JGHZ3N34.js";
25
+ import "./chunks/chunk-APLWFV4I.js";
26
+ import "./chunks/chunk-I5SGYTRM.js";
27
+ import "./chunks/chunk-VB4IXIPM.js";
28
28
  import "./chunks/chunk-G2FD7S3C.js";
29
- import "./chunks/chunk-JGQQAUVL.js";
29
+ import "./chunks/chunk-UV2IJMIG.js";
30
30
  import "./chunks/chunk-GQZVR5DW.js";
31
- import "./chunks/chunk-OYCQVJYY.js";
32
- import "./chunks/chunk-P5PBJONQ.js";
33
- import "./chunks/chunk-MEVTV4FI.js";
34
- import "./chunks/chunk-D3E7AXBB.js";
35
- import "./chunks/chunk-BW2NMXRV.js";
31
+ import "./chunks/chunk-XTF2VWJN.js";
32
+ import "./chunks/chunk-SENPGW4O.js";
33
+ import "./chunks/chunk-BXE3SBBN.js";
34
+ import "./chunks/chunk-G7SG4XMK.js";
35
+ import "./chunks/chunk-3UGWYQNY.js";
36
36
  import "./chunks/chunk-ZANALBSX.js";
37
- import "./chunks/chunk-3FWNQNF7.js";
38
- import "./chunks/chunk-7OTWJQGA.js";
37
+ import "./chunks/chunk-SACSQ45G.js";
38
+ import "./chunks/chunk-HTF32WSW.js";
39
39
  import "./chunks/chunk-OPPVSPEF.js";
40
40
  import "./chunks/chunk-3PZSBNLI.js";
41
41
  import "./chunks/chunk-CKUVEHSS.js";
42
42
  import "./chunks/chunk-VPE4AYP7.js";
43
- import "./chunks/chunk-2C5SATRZ.js";
43
+ import "./chunks/chunk-TUMJNAOL.js";
44
44
  import "./chunks/chunk-QYBZZI5H.js";
45
45
  import "./chunks/chunk-CFXXFHRK.js";
46
- import "./chunks/chunk-W2YAW36J.js";
46
+ import "./chunks/chunk-7L7MN2OM.js";
47
47
  import "./chunks/chunk-VX656OAZ.js";
48
48
  import "./chunks/chunk-5ORP7EFJ.js";
49
- import "./chunks/chunk-DZR37KXT.js";
50
- import "./chunks/chunk-EIY2SKD3.js";
51
- import "./chunks/chunk-T3H5ELLA.js";
49
+ import "./chunks/chunk-VSSIYQYF.js";
50
+ import "./chunks/chunk-LG2UK4MB.js";
51
+ import "./chunks/chunk-FU57ZNRQ.js";
52
52
  import "./chunks/chunk-HMXCN6PG.js";
53
53
  import "./chunks/chunk-AB35TJST.js";
54
54
  import "./chunks/chunk-2VMKQKVO.js";
55
55
  import "./chunks/chunk-HKYXWZQS.js";
56
56
  import "./chunks/chunk-34BOZKIE.js";
57
57
  import "./chunks/chunk-JKJWSY4V.js";
58
- import "./chunks/chunk-DV5B5UU7.js";
58
+ import "./chunks/chunk-5NZRT7GL.js";
59
+ import "./chunks/chunk-TLWXLNLY.js";
59
60
  import "./chunks/chunk-3YBP46PB.js";
60
61
  import "./chunks/chunk-VACK24HF.js";
61
62
  import "./chunks/chunk-CPMHA4W5.js";