@jafreck/lore 0.2.5 → 0.3.0

package/dist/indexer/stages/embedding.js

@@ -0,0 +1,217 @@
+/**
+ * @module indexer/stages/embedding
+ *
+ * Pipeline stage: embed symbol signatures, documentation sections, and
+ * commit messages into vec0 virtual tables for semantic search.
+ */
+import { setLoreMeta, createVec0Tables } from '../db.js';
+import { buildStructuralEmbeddingText } from '../embedder.js';
+/** Number of items to embed per batch. */
+const EMBED_BATCH_SIZE = 64;
+/**
+ * Embed symbol signatures, documentation sections, and commit messages.
+ *
+ * Skips entirely when no `EmbeddingProvider` is configured in the context.
+ */
+export class EmbeddingStage {
+    name = 'embedding';
+    async execute(context, mode) {
+        if (!context.embedder)
+            return;
+        const { db, embedder } = context;
+        context.log.indexing('embedding started', { model: embedder.modelName });
+        await embedder.init();
+        if (mode === 'update') {
+            // Clean up orphaned symbol embeddings for symbols that were deleted/replaced.
+            deleteSymbolEmbeddings(db, context.staleSymbolIds);
+            // Resolve scoped file/doc IDs for incremental embedding.
+            const changedFileIds = resolveFileIds(db, context.changedSourcePaths, context.branch);
+            const changedDocIds = resolveDocIds(db, context.changedDocPaths, context.branch);
+            await embedStructural(db, embedder, changedFileIds);
+            await embedDocumentation(db, embedder, changedDocIds);
+        }
+        else {
+            await embedStructural(db, embedder);
+            await embedDocumentation(db, embedder);
+        }
+        if (context.history) {
+            await embedCommitMessages(db, embedder);
+        }
+        context.log.indexing('embedding complete');
+    }
+}
+// ─── Structural symbol embeddings ─────────────────────────────────────────────
+async function embedStructural(db, embedder, fileIds) {
+    setLoreMeta(db, 'embedding_model', embedder.modelName);
+    setLoreMeta(db, 'embedding_dims', String(embedder.dims));
+    createVec0Tables(db, embedder.dims);
+    const baseQuery = `SELECT id, name, signature, resolved_type_signature, resolved_return_type
+     FROM symbols
+     WHERE (signature IS NOT NULL
+        OR resolved_type_signature IS NOT NULL
+        OR resolved_return_type IS NOT NULL)`;
+    let symbols;
+    if (fileIds && fileIds.length > 0) {
+        symbols = db
+            .prepare(`${baseQuery} AND file_id IN (${fileIds.map(() => '?').join(', ')})`)
+            .all(...fileIds);
+    }
+    else {
+        symbols = db.prepare(baseQuery).all();
+    }
+    const insertEmbed = db.prepare('INSERT OR REPLACE INTO symbol_embeddings(rowid, embedding) VALUES (CAST(? AS INTEGER), json(?))');
+    // P4: Pipeline — start embedding the next batch while writing the current one.
+    let pendingEmbed = null;
+    let pendingBatch = [];
+    for (let i = 0; i < symbols.length; i += EMBED_BATCH_SIZE) {
+        const batch = symbols.slice(i, i + EMBED_BATCH_SIZE);
+        const texts = batch.map((symbol) => buildStructuralEmbeddingText({
+            name: symbol.name,
+            signature: symbol.signature,
+            resolvedTypeSignature: symbol.resolved_type_signature,
+            resolvedReturnType: symbol.resolved_return_type,
+        }));
+        if (pendingEmbed) {
+            const embeddings = await pendingEmbed;
+            db.transaction(() => {
+                for (let j = 0; j < pendingBatch.length; j++) {
+                    const sym = pendingBatch[j];
+                    if (sym)
+                        insertEmbed.run(sym.id, JSON.stringify(embeddings[j]));
+                }
+            })();
+        }
+        pendingEmbed = embedder.embed(texts);
+        pendingBatch = batch;
+    }
+    if (pendingEmbed) {
+        const embeddings = await pendingEmbed;
+        db.transaction(() => {
+            for (let j = 0; j < pendingBatch.length; j++) {
+                const sym = pendingBatch[j];
+                if (sym)
+                    insertEmbed.run(sym.id, JSON.stringify(embeddings[j]));
+            }
+        })();
+    }
+}
+// ─── Documentation section embeddings ─────────────────────────────────────────
+async function embedDocumentation(db, embedder, docIds) {
+    db.exec(`
+    CREATE VIRTUAL TABLE IF NOT EXISTS doc_section_embeddings USING vec0(
+      embedding FLOAT[${embedder.dims}]
+    );
+  `);
+    let sections;
+    if (docIds && docIds.length > 0) {
+        sections = db.prepare(`SELECT id, title, content
+       FROM doc_sections
+       WHERE doc_id IN (${docIds.map(() => '?').join(', ')})
+       ORDER BY id`).all(...docIds);
+    }
+    else {
+        sections = db.prepare(`SELECT id, title, content
+       FROM doc_sections
+       ORDER BY id`).all();
+    }
+    if (sections.length === 0)
+        return;
+    const insertEmbed = db.prepare('INSERT OR REPLACE INTO doc_section_embeddings(rowid, embedding) VALUES (CAST(? AS INTEGER), json(?))');
+    // P4: Pipeline — start embedding the next batch while writing the current one.
+    let pendingEmbed = null;
+    let pendingBatch = [];
+    for (let i = 0; i < sections.length; i += EMBED_BATCH_SIZE) {
+        const batch = sections.slice(i, i + EMBED_BATCH_SIZE);
+        const texts = batch.map(section => section.content || section.title);
+        if (pendingEmbed) {
+            const embeddings = await pendingEmbed;
+            db.transaction(() => {
+                for (let j = 0; j < pendingBatch.length; j++) {
+                    const section = pendingBatch[j];
+                    if (section)
+                        insertEmbed.run(section.id, JSON.stringify(embeddings[j]));
+                }
+            })();
+        }
+        pendingEmbed = embedder.embed(texts);
+        pendingBatch = batch;
+    }
+    if (pendingEmbed) {
+        const embeddings = await pendingEmbed;
+        db.transaction(() => {
+            for (let j = 0; j < pendingBatch.length; j++) {
+                const section = pendingBatch[j];
+                if (section)
+                    insertEmbed.run(section.id, JSON.stringify(embeddings[j]));
+            }
+        })();
+    }
+}
+// ─── Commit message embeddings ────────────────────────────────────────────────
+async function embedCommitMessages(db, embedder) {
+    const commits = db.prepare(`SELECT c.rowid, c.message
+     FROM commits c
+     LEFT JOIN commit_embeddings ce ON ce.rowid = c.rowid
+     WHERE length(trim(c.message)) > 0
+       AND ce.rowid IS NULL
+     ORDER BY c.rowid`).all();
+    if (commits.length === 0)
+        return;
+    const insertEmbed = db.prepare('INSERT OR REPLACE INTO commit_embeddings(rowid, embedding) VALUES (CAST(? AS INTEGER), json(?))');
+    // P4: Pipeline — start embedding the next batch while writing the current one.
+    let pendingEmbed = null;
+    let pendingBatch = [];
+    for (let i = 0; i < commits.length; i += EMBED_BATCH_SIZE) {
+        const batch = commits.slice(i, i + EMBED_BATCH_SIZE);
+        if (pendingEmbed) {
+            const embeddings = await pendingEmbed;
+            db.transaction(() => {
+                for (let j = 0; j < pendingBatch.length; j++) {
+                    const commit = pendingBatch[j];
+                    if (commit)
+                        insertEmbed.run(commit.rowid, JSON.stringify(embeddings[j]));
+                }
+            })();
+        }
+        pendingEmbed = embedder.embed(batch.map((commit) => commit.message));
+        pendingBatch = batch;
+    }
+    if (pendingEmbed) {
+        const embeddings = await pendingEmbed;
+        db.transaction(() => {
+            for (let j = 0; j < pendingBatch.length; j++) {
+                const commit = pendingBatch[j];
+                if (commit)
+                    insertEmbed.run(commit.rowid, JSON.stringify(embeddings[j]));
+            }
+        })();
+    }
+}
+// ─── Update-mode helpers ──────────────────────────────────────────────────────
+function deleteSymbolEmbeddings(db, symbolIds) {
+    if (symbolIds.length === 0)
+        return;
+    const hasTable = db.prepare("SELECT 1 AS present FROM sqlite_master WHERE type IN ('table', 'virtual table') AND name = 'symbol_embeddings'").get();
+    if (!hasTable)
+        return;
+    db.prepare(`DELETE FROM symbol_embeddings WHERE rowid IN (${symbolIds.map(() => '?').join(', ')})`).run(...symbolIds);
+}
+function resolveFileIds(db, paths, branch) {
+    const ids = [];
+    for (const p of paths) {
+        const row = db.prepare('SELECT id FROM files WHERE path = ? AND branch = ?').get(p, branch);
+        if (row)
+            ids.push(row.id);
+    }
+    return ids;
+}
+function resolveDocIds(db, paths, branch) {
+    const ids = [];
+    for (const p of paths) {
+        const row = db.prepare('SELECT id FROM docs WHERE path = ? AND branch = ?').get(p, branch);
+        if (row)
+            ids.push(row.id);
+    }
+    return ids;
+}
+//# sourceMappingURL=embedding.js.map

package/dist/indexer/stages/embedding.js.map

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package/dist/indexer/stages/import-resolution.d.ts

@@ -0,0 +1,17 @@
+/**
+ * @module indexer/stages/import-resolution
+ *
+ * Pipeline stage: resolve raw import strings to file IDs (internal) or
+ * external package names. Populates `file_imports.resolved_id` and
+ * `external_deps` rows.
+ */
+import type { PipelineContext, PipelineStage } from '../pipeline.js';
+/**
+ * Resolves raw imports in `file_imports` to internal file IDs (`resolved_id`)
+ * or external package names (`external_deps`).
+ */
+export declare class ImportResolutionStage implements PipelineStage {
+    readonly name = "import-resolution";
+    execute(context: PipelineContext, _mode: 'build' | 'update'): Promise<void>;
+}
+//# sourceMappingURL=import-resolution.d.ts.map

package/dist/indexer/stages/import-resolution.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"import-resolution.d.ts","sourceRoot":"","sources":["../../../src/indexer/stages/import-resolution.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,eAAe,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAKrE;;;GAGG;AACH,qBAAa,qBAAsB,YAAW,aAAa;IACzD,QAAQ,CAAC,IAAI,uBAAuB;IAE9B,OAAO,CAAC,OAAO,EAAE,eAAe,EAAE,KAAK,EAAE,OAAO,GAAG,QAAQ,GAAG,OAAO,CAAC,IAAI,CAAC;CAsDlF"}

package/dist/indexer/stages/import-resolution.js

@@ -0,0 +1,47 @@
+/**
+ * @module indexer/stages/import-resolution
+ *
+ * Pipeline stage: resolve raw import strings to file IDs (internal) or
+ * external package names. Populates `file_imports.resolved_id` and
+ * `external_deps` rows.
+ */
+import { ImportResolver } from '../resolver.js';
+// ─── Stage ────────────────────────────────────────────────────────────────────
+/**
+ * Resolves raw imports in `file_imports` to internal file IDs (`resolved_id`)
+ * or external package names (`external_deps`).
+ */
+export class ImportResolutionStage {
+    name = 'import-resolution';
+    async execute(context, _mode) {
+        const { db, branch, walkerConfig } = context;
+        const rootDir = walkerConfig.rootDir;
+        const resolver = new ImportResolver();
+        // Fetch all unresolved imports with their file's path, language, and file_id
+        const rows = db
+            .prepare(`SELECT fi.id, fi.file_id, fi.raw_import, f.path, f.language
+         FROM file_imports fi
+         JOIN files f ON f.id = fi.file_id
+         WHERE fi.resolved_id IS NULL AND f.branch = ?`)
+            .all(branch);
+        // P5: Build a bulk path→id map so we don't do N individual SELECT lookups.
+        const fileIdByPath = new Map(db.prepare('SELECT id, path FROM files WHERE branch = ?').all(branch)
+            .map(r => [r.path, r.id]));
+        const updateResolved = db.prepare('UPDATE file_imports SET resolved_id = ? WHERE id = ?');
+        const insertExternalDep = db.prepare('INSERT OR IGNORE INTO external_deps (file_id, package) VALUES (?, ?)');
+        for (const row of rows) {
+            const resolved = resolver.resolve({ source: row.raw_import, importedNames: [] }, row.path, rootDir, row.language);
+            if (resolved.resolvedPath) {
+                const targetId = fileIdByPath.get(resolved.resolvedPath);
+                if (targetId !== undefined) {
+                    updateResolved.run(targetId, row.id);
+                }
+            }
+            else if (resolved.isExternal && resolved.externalName) {
+                insertExternalDep.run(row.file_id, resolved.externalName);
+            }
+        }
+        context.log.indexing('imports resolved', { totalUnresolved: rows.length });
+    }
+}
+//# sourceMappingURL=import-resolution.js.map

package/dist/indexer/stages/import-resolution.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"import-resolution.js","sourceRoot":"","sources":["../../../src/indexer/stages/import-resolution.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAGH,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAEhD,iFAAiF;AAEjF;;;GAGG;AACH,MAAM,OAAO,qBAAqB;IACvB,IAAI,GAAG,mBAAmB,CAAC;IAEpC,KAAK,CAAC,OAAO,CAAC,OAAwB,EAAE,KAAyB;QAC/D,MAAM,EAAE,EAAE,EAAE,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAC;QAC7C,MAAM,OAAO,GAAG,YAAY,CAAC,OAAO,CAAC;QACrC,MAAM,QAAQ,GAAG,IAAI,cAAc,EAAE,CAAC;QAEtC,6EAA6E;QAC7E,MAAM,IAAI,GAAG,EAAE;aACZ,OAAO,CACN;;;uDAG+C,CAChD;aACA,GAAG,CAAC,MAAM,CAMT,CAAC;QAEL,2EAA2E;QAC3E,MAAM,YAAY,GAAG,IAAI,GAAG,CACzB,EAAE,CAAC,OAAO,CAAC,6CAA6C,CAAC,CAAC,GAAG,CAAC,MAAM,CAAyC;aAC3G,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC,CAAC,CAC5B,CAAC;QAEF,MAAM,cAAc,GAAG,EAAE,CAAC,OAAO,CAC/B,sDAAsD,CACvD,CAAC;QACF,MAAM,iBAAiB,GAAG,EAAE,CAAC,OAAO,CAClC,sEAAsE,CACvE,CAAC;QAEF,KAAK,MAAM,GAAG,IAAI,IAAI,EAAE,CAAC;YACvB,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,CAC/B,EAAE,MAAM,EAAE,GAAG,CAAC,UAAU,EAAE,aAAa,EAAE,EAAE,EAAE,EAC7C,GAAG,CAAC,IAAI,EACR,OAAO,EACP,GAAG,CAAC,QAAQ,CACb,CAAC;YAEF,IAAI,QAAQ,CAAC,YAAY,EAAE,CAAC;gBAC1B,MAAM,QAAQ,GAAG,YAAY,CAAC,GAAG,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC;gBACzD,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;oBAC3B,cAAc,CAAC,GAAG,CAAC,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,CAAC;gBACvC,CAAC;YACH,CAAC;iBAAM,IAAI,QAAQ,CAAC,UAAU,IAAI,QAAQ,CAAC,YAAY,EAAE,CAAC;gBACxD,iBAAiB,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,EAAE,QAAQ,CAAC,YAAY,CAAC,CAAC;YAC5D,CAAC;QACH,CAAC;QAED,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,kBAAkB,EAAE,EAAE,eAAe,EAAE,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;IAC7E,CAAC;CACF"}

package/dist/indexer/stages/index.d.ts

@@ -0,0 +1,12 @@
+/**
+ * @module indexer/stages
+ *
+ * Concrete pipeline stages with real implementations.
+ */
+export { SourceIndexStage } from './source-index.js';
+export { DocsIndexStage } from './docs-index.js';
+export { ImportResolutionStage } from './import-resolution.js';
+export { DependencyApiStage } from './dependency-api.js';
+export { LspEnrichmentStage } from './lsp-enrichment.js';
+export { EmbeddingStage } from './embedding.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/indexer/stages/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/indexer/stages/index.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,gBAAgB,EAAE,MAAM,mBAAmB,CAAC;AACrD,OAAO,EAAE,cAAc,EAAE,MAAM,iBAAiB,CAAC;AACjD,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACzD,OAAO,EAAE,kBAAkB,EAAE,MAAM,qBAAqB,CAAC;AACzD,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC"}

package/dist/indexer/stages/index.js

@@ -0,0 +1,12 @@
+/**
+ * @module indexer/stages
+ *
+ * Concrete pipeline stages with real implementations.
+ */
+export { SourceIndexStage } from './source-index.js';
+export { DocsIndexStage } from './docs-index.js';
+export { ImportResolutionStage } from './import-resolution.js';
+export { DependencyApiStage } from './dependency-api.js';
+export { LspEnrichmentStage } from './lsp-enrichment.js';
+export { EmbeddingStage } from './embedding.js';
+//# sourceMappingURL=index.js.map

package/dist/indexer/stages/index.js.map

@@ -0,0 +1 @@
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package/dist/indexer/stages/lsp-enrichment.d.ts

@@ -0,0 +1,48 @@
+/**
+ * @module indexer/stages/lsp-enrichment
+ *
+ * Pipeline stage: enrich symbols, symbol_refs, type_refs, and
+ * symbol_relationships with LSP-derived metadata (definition_path,
+ * definition_line, resolved_type_signature, etc.).
+ *
+ * ## Data written
+ *
+ * - `symbols.resolved_type_signature`, `resolved_return_type`,
+ *   `definition_uri`, `definition_path`
+ * - `symbol_refs.resolved_type_signature`, `resolved_return_type`,
+ *   `definition_uri`, `definition_path`, `definition_line`, `definition_character`
+ * - `type_refs.resolved_type_signature`, `definition_uri`,
+ *   `definition_path`, `definition_line`, `definition_character`
+ * - `symbol_relationships.definition_uri`, `definition_path`,
+ *   `definition_line`, `definition_character`
+ *
+ * ## Data dependency
+ *
+ * **Must run before `ResolutionStage`.**  The resolution stage reads
+ * `definition_path` / `definition_line` columns populated here to perform
+ * LSP-based containment resolution.
+ */
+import type { PipelineContext, PipelineStage } from '../pipeline.js';
+import type { Database } from '../db.js';
+import { LspEnrichmentCoordinator } from '../lsp/enrichment.js';
+/**
+ * Enriches indexed artefacts with LSP-derived metadata.
+ *
+ * Manages the lifecycle of an `LspEnrichmentCoordinator` per pipeline run.
+ * The coordinator is started during `execute()` and disposed in `dispose()`.
+ */
+export declare class LspEnrichmentStage implements PipelineStage {
+    readonly name = "lsp-enrichment";
+    private coordinator;
+    execute(context: PipelineContext, _mode: 'build' | 'update'): Promise<void>;
+    dispose(): Promise<void>;
+}
+/**
+ * Enrich symbols, call refs, type refs, and relationships for every file in
+ * the context with LSP-derived metadata.
+ */
+export declare function enrichProjectRefs(db: Database.Database, branch: string, files: Array<{
+    path: string;
+    language: string;
+}>, coordinator: LspEnrichmentCoordinator): Promise<void>;
+//# sourceMappingURL=lsp-enrichment.d.ts.map

package/dist/indexer/stages/lsp-enrichment.d.ts.map

@@ -0,0 +1 @@
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package/dist/indexer/stages/lsp-enrichment.js

@@ -0,0 +1,158 @@
+/**
+ * @module indexer/stages/lsp-enrichment
+ *
+ * Pipeline stage: enrich symbols, symbol_refs, type_refs, and
+ * symbol_relationships with LSP-derived metadata (definition_path,
+ * definition_line, resolved_type_signature, etc.).
+ *
+ * ## Data written
+ *
+ * - `symbols.resolved_type_signature`, `resolved_return_type`,
+ *   `definition_uri`, `definition_path`
+ * - `symbol_refs.resolved_type_signature`, `resolved_return_type`,
+ *   `definition_uri`, `definition_path`, `definition_line`, `definition_character`
+ * - `type_refs.resolved_type_signature`, `definition_uri`,
+ *   `definition_path`, `definition_line`, `definition_character`
+ * - `symbol_relationships.definition_uri`, `definition_path`,
+ *   `definition_line`, `definition_character`
+ *
+ * ## Data dependency
+ *
+ * **Must run before `ResolutionStage`.**  The resolution stage reads
+ * `definition_path` / `definition_line` columns populated here to perform
+ * LSP-based containment resolution.
+ */
+import * as fs from 'node:fs';
+import { LspEnrichmentCoordinator } from '../lsp/enrichment.js';
+import { buildStructuralEmbeddingText } from '../embedder.js';
+/**
+ * Enriches indexed artefacts with LSP-derived metadata.
+ *
+ * Manages the lifecycle of an `LspEnrichmentCoordinator` per pipeline run.
+ * The coordinator is started during `execute()` and disposed in `dispose()`.
+ */
+export class LspEnrichmentStage {
+    name = 'lsp-enrichment';
+    coordinator = null;
+    async execute(context, _mode) {
+        if (!context.lsp?.enabled || context.files.length === 0)
+            return;
+        this.coordinator = new LspEnrichmentCoordinator(context.lsp, context.walkerConfig.rootDir);
+        // Start language servers for all languages seen in the file list.
+        const languages = new Set(context.files.map(f => f.language));
+        if (context.indexDependencies)
+            languages.add('typescript');
+        await this.coordinator.start(languages);
+        await enrichProjectRefs(context.db, context.branch, context.files, this.coordinator);
+    }
+    async dispose() {
+        if (this.coordinator) {
+            await this.coordinator.dispose();
+            this.coordinator = null;
+        }
+    }
+}
+// ─── Enrichment logic ─────────────────────────────────────────────────────────────────
+/**
+ * Enrich symbols, call refs, type refs, and relationships for every file in
+ * the context with LSP-derived metadata.
+ */
+export async function enrichProjectRefs(db, branch, files, coordinator) {
+    const selectSymbols = db.prepare(`SELECT s.id, s.name, s.signature, s.start_line
+     FROM symbols s
+     JOIN files f ON f.id = s.file_id
+     WHERE f.path = ? AND f.branch = ?
+     ORDER BY s.id`);
+    const selectCallRefs = db.prepare(`SELECT sr.id, sr.call_line, sr.call_character
+     FROM symbol_refs sr
+     JOIN symbols s ON s.id = sr.caller_id
+     JOIN files f ON f.id = s.file_id
+     WHERE f.path = ? AND f.branch = ?
+     ORDER BY sr.id`);
+    const selectTypeRefs = db.prepare(`SELECT tr.id, tr.ref_line, tr.ref_character
+     FROM type_refs tr
+     JOIN files f ON f.id = tr.file_id
+     WHERE f.path = ? AND f.branch = ?
+     ORDER BY tr.id`);
+    const selectRelationships = db.prepare(`SELECT sr.id, sr.line, sr.character
+     FROM symbol_relationships sr
+     JOIN files f ON f.id = sr.file_id
+     WHERE f.path = ? AND f.branch = ? AND sr.line IS NOT NULL
+     ORDER BY sr.id`);
+    const updateSymbol = db.prepare(`UPDATE symbols
+     SET resolved_type_signature = ?, resolved_return_type = ?, definition_uri = ?, definition_path = ?
+     WHERE id = ?`);
+    const updateSymbolFts = db.prepare('UPDATE symbols_fts SET signature = ? WHERE rowid = ?');
+    const updateCallRef = db.prepare(`UPDATE symbol_refs
+     SET resolved_type_signature = ?, resolved_return_type = ?, definition_uri = ?, definition_path = ?, definition_line = ?, definition_character = ?
+     WHERE id = ?`);
+    const updateTypeRef = db.prepare(`UPDATE type_refs
+     SET resolved_type_signature = ?, definition_uri = ?, definition_path = ?, definition_line = ?, definition_character = ?
+     WHERE id = ?`);
+    const updateRelationship = db.prepare(`UPDATE symbol_relationships
+     SET definition_uri = ?, definition_path = ?, definition_line = ?, definition_character = ?
+     WHERE id = ?`);
+    for (const file of files) {
+        if (!file || !fs.existsSync(file.path))
+            continue;
+        let source;
+        try {
+            source = fs.readFileSync(file.path, 'utf8');
+        }
+        catch {
+            continue;
+        }
+        const tagged = [];
+        const symbols = selectSymbols.all(file.path, branch);
+        for (const s of symbols) {
+            tagged.push({ table: 'symbol', rowId: s.id, line: s.start_line, character: 0, name: s.name, signature: s.signature });
+        }
+        const callRefs = selectCallRefs.all(file.path, branch);
+        for (const cr of callRefs) {
+            tagged.push({ table: 'callRef', rowId: cr.id, line: cr.call_line, character: cr.call_character ?? 0 });
+        }
+        const typeRefs = selectTypeRefs.all(file.path, branch);
+        for (const tr of typeRefs) {
+            tagged.push({ table: 'typeRef', rowId: tr.id, line: tr.ref_line, character: tr.ref_character ?? 0 });
+        }
+        const relationships = selectRelationships.all(file.path, branch);
+        for (const r of relationships) {
+            tagged.push({ table: 'relationship', rowId: r.id, line: r.line, character: r.character ?? 0 });
+        }
+        if (tagged.length === 0)
+            continue;
+        const metadata = await coordinator.enrich({
+            filePath: file.path,
+            language: file.language,
+            source,
+            targets: tagged.map(t => ({ line: t.line, character: t.character })),
+        });
+        for (let i = 0; i < tagged.length; i++) {
+            const tag = tagged[i];
+            const m = metadata[i];
+            if (!m)
+                continue;
+            switch (tag.table) {
+                case 'symbol':
+                    updateSymbol.run(m.resolvedTypeSignature, m.resolvedReturnType, m.definitionUri, m.definitionPath, tag.rowId);
+                    updateSymbolFts.run(buildStructuralEmbeddingText({
+                        name: tag.name,
+                        signature: tag.signature ?? null,
+                        resolvedTypeSignature: m.resolvedTypeSignature,
+                        resolvedReturnType: m.resolvedReturnType,
+                    }), tag.rowId);
+                    break;
+                case 'callRef':
+                    updateCallRef.run(m.resolvedTypeSignature, m.resolvedReturnType, m.definitionUri, m.definitionPath, m.definitionLine, m.definitionCharacter, tag.rowId);
+                    break;
+                case 'typeRef':
+                    updateTypeRef.run(m.resolvedTypeSignature, m.definitionUri, m.definitionPath, m.definitionLine, m.definitionCharacter, tag.rowId);
+                    break;
+                case 'relationship':
+                    updateRelationship.run(m.definitionUri, m.definitionPath, m.definitionLine, m.definitionCharacter, tag.rowId);
+                    break;
+            }
+        }
+    }
+}
+//# sourceMappingURL=lsp-enrichment.js.map

package/dist/indexer/stages/lsp-enrichment.js.map

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package/dist/indexer/stages/source-index.d.ts

@@ -0,0 +1,31 @@
+/**
+ * @module indexer/stages/source-index
+ *
+ * Pipeline stage: walk, parse, extract, and insert symbols/imports/callRefs/
+ * typeRefs/relationships/routes/annotations for all source files.
+ *
+ * This is the first stage in the pipeline and populates `context.files`.
+ */
+import type { PipelineContext, PipelineStage } from '../pipeline.js';
+import type { Database } from '../db.js';
+import { ParserPool } from '../parser.js';
+/**
+ * Walk source files, parse with tree-sitter, extract symbols/imports/callRefs/
+ * typeRefs/relationships/routes/annotations, and persist to the database.
+ *
+ * Populates `context.files` for use by later stages.
+ */
+export declare class SourceIndexStage implements PipelineStage {
+    readonly name = "source-index";
+    private pool;
+    execute(context: PipelineContext, mode: 'build' | 'update'): Promise<void>;
+    dispose(): Promise<void>;
+    private processBuild;
+    private processUpdate;
+}
+/**
+ * Parse one file, extract symbols/imports/callRefs/typeRefs/relationships/
+ * routes/annotations, and insert into the DB.
+ */
+export declare function processFile(db: Database.Database, pool: ParserPool, filePath: string, language: string, branch: string): void;
+//# sourceMappingURL=source-index.d.ts.map

package/dist/indexer/stages/source-index.d.ts.map

@@ -0,0 +1 @@
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