@jafreck/lore 0.2.5 → 0.3.0

package/dist/indexer/call-graph.js

@@ -61,66 +61,144 @@ export function normalizeTypeName(raw) {
 // ─── resolveSymbolEdges ───────────────────────────────────────────────────────
 /**
  * Resolves unresolved edges in `symbol_refs`, `type_refs`, and
- * `symbol_relationships` using name-based and definition-path-based passes.
+ * `symbol_relationships` using a layered resolution strategy:
  *
- * Replaces the old `buildCallGraph()`.
+ *   1. **LSP containment mapping** (`lsp_definition`) — when `definition_path`
+ *      + `definition_line` are populated, map to the narrowest enclosing symbol.
+ *   2. **Same-file name match** (`name_same_file`) — if the ref name matches
+ *      exactly one symbol in the same file, resolve it.
+ *   3. **Globally unique name** (`name_unique`) — if the ref name matches
+ *      exactly one symbol across the entire index, resolve it.
+ *   4. Leave as `unresolved` / `external_definition` otherwise.
  */
 export function resolveSymbolEdges(db) {
-    const nameToSymbols = buildNameMap(db);
-    const pathToSymbols = buildPathMap(db);
     const runInTransaction = db.transaction(() => {
-        // ── symbol_refs: name-based, then definition-path ──
-        resolveByNameGeneric(nameToSymbols, {
+        // Pass 1: LSP containment mapping (highest confidence)
+        resolveByContainment(db, 'symbol_refs', 'callee_id', 'definition_path', 'definition_line');
+        resolveByContainment(db, 'type_refs', 'type_id', 'definition_path', 'definition_line');
+        resolveByContainment(db, 'symbol_relationships', 'target_symbol_id', 'definition_path', 'definition_line');
+        // Pass 2: Name-based fallback for remaining unresolved refs
+        const nameMap = buildNameMap(db);
+        resolveByNameFallback(db, nameMap, {
+            tableName: 'symbol_refs',
+            targetIdColumn: 'callee_id',
             selectUnresolved: db.prepare(`SELECT sr.id, sr.callee_name AS target_name, s.file_id AS source_file_id
-         FROM symbol_refs sr JOIN symbols s ON s.id = sr.caller_id
-         WHERE sr.callee_id IS NULL`),
-            update: db.prepare('UPDATE symbol_refs SET callee_id = ? WHERE id = ?'),
+         FROM symbol_refs sr
+         JOIN symbols s ON s.id = sr.caller_id
+         WHERE sr.callee_id IS NULL AND sr.resolution_method = 'unresolved'`),
         });
-        resolveByDefinitionPathGeneric(pathToSymbols, {
-            selectUnresolved: db.prepare(`SELECT id, definition_path FROM symbol_refs WHERE callee_id IS NULL AND definition_path IS NOT NULL`),
-            update: db.prepare('UPDATE symbol_refs SET callee_id = ? WHERE id = ?'),
-        });
-        // ── type_refs: qualified name first, then bare fallback ──
-        resolveByNameGeneric(nameToSymbols, {
+        resolveByNameFallback(db, nameMap, {
+            tableName: 'type_refs',
+            targetIdColumn: 'type_id',
             selectUnresolved: db.prepare(`SELECT tr.id, tr.type_name AS target_name, COALESCE(s.file_id, tr.file_id) AS source_file_id
          FROM type_refs tr LEFT JOIN symbols s ON s.id = tr.symbol_id
-         WHERE tr.type_id IS NULL`),
-            update: db.prepare('UPDATE type_refs SET type_id = ? WHERE id = ?'),
+         WHERE tr.type_id IS NULL AND tr.resolution_method = 'unresolved'`),
         });
-        resolveByNameGeneric(nameToSymbols, {
+        // type_refs bare-name fallback pass
+        resolveByNameFallback(db, nameMap, {
+            tableName: 'type_refs',
+            targetIdColumn: 'type_id',
             selectUnresolved: db.prepare(`SELECT tr.id, tr.type_name_bare AS target_name, COALESCE(s.file_id, tr.file_id) AS source_file_id
          FROM type_refs tr LEFT JOIN symbols s ON s.id = tr.symbol_id
-         WHERE tr.type_id IS NULL AND tr.type_name_bare != tr.type_name`),
-            update: db.prepare('UPDATE type_refs SET type_id = ? WHERE id = ?'),
-        });
-        resolveByDefinitionPathGeneric(pathToSymbols, {
-            selectUnresolved: db.prepare(`SELECT id, definition_path FROM type_refs WHERE type_id IS NULL AND definition_path IS NOT NULL`),
-            update: db.prepare('UPDATE type_refs SET type_id = ? WHERE id = ?'),
+         WHERE tr.type_id IS NULL AND tr.resolution_method = 'unresolved'
+           AND tr.type_name_bare != tr.type_name`),
         });
-        // ── symbol_relationships ──
-        resolveByNameGeneric(nameToSymbols, {
+        resolveByNameFallback(db, nameMap, {
+            tableName: 'symbol_relationships',
+            targetIdColumn: 'target_symbol_id',
             selectUnresolved: db.prepare(`SELECT sr.id, sr.target_symbol_name AS target_name, COALESCE(s.file_id, sr.file_id) AS source_file_id
          FROM symbol_relationships sr LEFT JOIN symbols s ON s.id = sr.source_symbol_id
-         WHERE sr.target_symbol_id IS NULL`),
-            update: db.prepare('UPDATE symbol_relationships SET target_symbol_id = ? WHERE id = ?'),
+         WHERE sr.target_symbol_id IS NULL AND sr.resolution_method = 'unresolved'`),
             normalizeTargetName: normalizeTypeName,
         });
-        resolveByDefinitionPathGeneric(pathToSymbols, {
-            selectUnresolved: db.prepare(`SELECT id, definition_path FROM symbol_relationships WHERE target_symbol_id IS NULL AND definition_path IS NOT NULL`),
-            update: db.prepare('UPDATE symbol_relationships SET target_symbol_id = ? WHERE id = ?'),
-        });
     });
     runInTransaction();
 }
-/** @deprecated Use `resolveSymbolEdges` instead. */
-export function buildCallGraph(db) {
-    resolveSymbolEdges(db);
+/**
+ * Resolves refs in `tableName` by mapping `definition_path`+`definition_line`
+ * to the narrowest enclosing symbol in the indexed files.
+ *
+ * Uses batched lookups: groups refs by definition_path, resolves the file and
+ * its symbols once per path, then resolves all refs for that path in memory.
+ */
+function resolveByContainment(db, tableName, targetIdColumn, defPathColumn, defLineColumn) {
+    const unresolvedWithDef = db.prepare(`SELECT id, ${defPathColumn} AS definition_path, ${defLineColumn} AS definition_line
+     FROM ${tableName}
+     WHERE ${targetIdColumn} IS NULL
+       AND ${defPathColumn} IS NOT NULL
+       AND ${defLineColumn} IS NOT NULL`).all();
+    if (unresolvedWithDef.length === 0) {
+        db.prepare(`UPDATE ${tableName} SET resolution_method = 'unresolved'
+       WHERE ${targetIdColumn} IS NULL AND resolution_method = 'unresolved'`).run();
+        return;
+    }
+    // P6: Build a bulk path→fileId map so we do one query instead of N.
+    const fileIdByPath = new Map(db.prepare('SELECT id, path FROM files').all()
+        .map(r => [r.path, r.id]));
+    // Group refs by definition_path for batched symbol lookup.
+    const refsByPath = new Map();
+    for (const ref of unresolvedWithDef) {
+        let list = refsByPath.get(ref.definition_path);
+        if (!list) {
+            list = [];
+            refsByPath.set(ref.definition_path, list);
+        }
+        list.push(ref);
+    }
+    const findSymbolsByFile = db.prepare(`SELECT id, start_line, end_line FROM symbols WHERE file_id = ? ORDER BY (end_line - start_line) ASC`);
+    const updateResolved = db.prepare(`UPDATE ${tableName} SET ${targetIdColumn} = ?, resolution_method = ? WHERE id = ?`);
+    const updateMethod = db.prepare(`UPDATE ${tableName} SET resolution_method = ? WHERE id = ?`);
+    for (const [defPath, refs] of refsByPath) {
+        const fileId = fileIdByPath.get(defPath);
+        if (fileId === undefined) {
+            for (const ref of refs) {
+                updateMethod.run('external_definition', ref.id);
+            }
+            continue;
+        }
+        // Load all symbols for this file once, sorted narrowest-first.
+        const symbols = findSymbolsByFile.all(fileId);
+        for (const ref of refs) {
+            const candidates = symbols.filter(s => s.start_line <= ref.definition_line && s.end_line >= ref.definition_line);
+            if (candidates.length === 0) {
+                updateMethod.run('unresolved', ref.id);
+                continue;
+            }
+            const narrowest = candidates[0];
+            const narrowestSpan = narrowest.end_line - narrowest.start_line;
+            const equallyNarrow = candidates.filter(c => (c.end_line - c.start_line) === narrowestSpan);
+            if (equallyNarrow.length === 1) {
+                updateResolved.run(narrowest.id, 'lsp_definition', ref.id);
+            }
+            else {
+                updateMethod.run('ambiguous_definition', ref.id);
+            }
+        }
+    }
+    // Mark remaining rows with no definition data as unresolved
+    db.prepare(`UPDATE ${tableName} SET resolution_method = 'unresolved'
+     WHERE ${targetIdColumn} IS NULL AND resolution_method = 'unresolved'
+       AND (${defPathColumn} IS NULL OR ${defLineColumn} IS NULL)`).run();
 }
-// ─── Shared lookup maps ───────────────────────────────────────────────────────
+// ─── Name-based fallback resolution ───────────────────────────────────────────
+/**
+ * Symbol kinds that should never be resolved across file boundaries via
+ * the `name_unique` tier.  These are common sources of false positive
+ * edges (e.g. `MIN`, `MAX`, `main`) that inflate SCC sizes.
+ */
+const CROSS_FILE_EXCLUDED_KINDS = new Set([
+    'macro',
+    'constant',
+    'enum_member',
+]);
+/**
+ * Builds a map from symbol name → array of { id, file_id, kind } for all symbols.
+ * Used by the name-based fallback pass.
+ */
 function buildNameMap(db) {
     const nameToSymbols = new Map();
     const allSymbols = db
-        .prepare('SELECT id, name, file_id FROM symbols')
+        .prepare('SELECT id, name, file_id, kind FROM symbols')
         .all();
     for (const row of allSymbols) {
         let list = nameToSymbols.get(row.name);
@@ -128,61 +206,52 @@ function buildNameMap(db) {
             list = [];
             nameToSymbols.set(row.name, list);
         }
-        list.push({ id: row.id, file_id: row.file_id });
+        list.push({ id: row.id, file_id: row.file_id, kind: row.kind });
     }
     return nameToSymbols;
 }
-function buildPathMap(db) {
-    const pathToSymbols = new Map();
-    const allSymbols = db
-        .prepare(`SELECT s.id, s.start_line, f.path
-       FROM symbols s
-       JOIN files f ON f.id = s.file_id`)
-        .all();
-    for (const row of allSymbols) {
-        let list = pathToSymbols.get(row.path);
-        if (!list) {
-            list = [];
-            pathToSymbols.set(row.path, list);
-        }
-        list.push({ id: row.id, start_line: row.start_line });
-    }
-    return pathToSymbols;
-}
-function resolveByNameGeneric(nameToSymbols, config) {
-    const unresolved = config.selectUnresolved.all();
-    const updateMany = () => {
-        for (const ref of unresolved) {
-            let candidates = nameToSymbols.get(ref.target_name);
-            if ((!candidates || candidates.length === 0) && config.normalizeTargetName) {
-                const normalized = config.normalizeTargetName(ref.target_name);
-                if (normalized && normalized !== ref.target_name) {
-                    candidates = nameToSymbols.get(normalized);
-                }
-            }
-            if (!candidates || candidates.length === 0)
-                continue;
-            const sameFile = candidates.find(c => c.file_id === ref.source_file_id);
-            const best = sameFile ?? candidates[0];
-            config.update.run(best.id, ref.id);
-        }
-    };
-    updateMany();
-}
-function resolveByDefinitionPathGeneric(pathToSymbols, config) {
+/**
+ * Resolves remaining unresolved refs by name matching with two confidence tiers:
+ *
+ * - `name_same_file`: target name matches exactly one symbol in the same file
+ * - `name_unique`: target name matches exactly one symbol in the entire index,
+ *   **excluding** macro/constant/enum_member symbols that commonly produce
+ *   false cross-file edges (e.g. `MIN`, `MAX`, `main`).
+ *
+ * Non-unique cross-file matches are left as `unresolved`.
+ */
+function resolveByNameFallback(db, nameToSymbols, config) {
     const unresolved = config.selectUnresolved.all();
     if (unresolved.length === 0)
         return;
+    const updateResolved = db.prepare(`UPDATE ${config.tableName} SET ${config.targetIdColumn} = ?, resolution_method = ? WHERE id = ?`);
     for (const ref of unresolved) {
-        const candidates = pathToSymbols.get(ref.definition_path);
+        // Look up candidates by name
+        let candidates = nameToSymbols.get(ref.target_name);
+        // Try normalized name if direct match fails
+        if ((!candidates || candidates.length === 0) && config.normalizeTargetName) {
+            const normalized = config.normalizeTargetName(ref.target_name);
+            if (normalized && normalized !== ref.target_name) {
+                candidates = nameToSymbols.get(normalized);
+            }
+        }
         if (!candidates || candidates.length === 0)
             continue;
-        if (candidates.length === 1) {
-            config.update.run(candidates[0].id, ref.id);
+        // Tier 1: same-file unique match
+        const sameFile = candidates.filter(c => c.file_id === ref.source_file_id);
+        if (sameFile.length === 1) {
+            updateResolved.run(sameFile[0].id, 'name_same_file', ref.id);
+            continue;
+        }
+        // Tier 2: globally unique match (exactly one symbol with this name).
+        // Filter out macro/constant/enum_member kinds — these cause false
+        // cross-file edges (e.g. MIN, MAX, main in C/C++).
+        const crossFileEligible = candidates.filter(c => !CROSS_FILE_EXCLUDED_KINDS.has(c.kind));
+        if (crossFileEligible.length === 1) {
+            updateResolved.run(crossFileEligible[0].id, 'name_unique', ref.id);
             continue;
         }
-        const sorted = [...candidates].sort((a, b) => a.start_line - b.start_line);
-        config.update.run(sorted[0].id, ref.id);
+        // Non-unique cross-file: leave as unresolved (option B)
     }
 }
 // ─── topoSort ─────────────────────────────────────────────────────────────────

package/dist/indexer/call-graph.js.map

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package/dist/indexer/db.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"db.d.ts","sourceRoot":"","sources":["../../src/indexer/db.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,QAAQ,MAAM,gBAAgB,CAAC;AAMtC,YAAY,EAAE,QAAQ,EAAE,CAAC;AAkVzB;;;;;GAKG;AACH,wBAAgB,MAAM,CAAC,IAAI,EAAE,MAAM,GAAG,QAAQ,CAAC,QAAQ,CAYtD;AAoBD,eAAO,MAAM,0BAA0B,qBAAqB,CAAC;AAC7D,eAAO,MAAM,uBAAuB,wBAAwB,CAAC;AAC7D,eAAO,MAAM,mCAAmC,8BAA8B,CAAC;AAC/E,eAAO,MAAM,oCAAoC,+BAA+B,CAAC;AAEjF,4DAA4D;AAC5D,wBAAgB,WAAW,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,IAAI,CAEnF;AAED,+EAA+E;AAC/E,wBAAgB,WAAW,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAKlF;AAID;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAmB1E"}
+{"version":3,"file":"db.d.ts","sourceRoot":"","sources":["../../src/indexer/db.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,QAAQ,MAAM,gBAAgB,CAAC;AAMtC,YAAY,EAAE,QAAQ,EAAE,CAAC;AA4WzB;;;;;GAKG;AACH,wBAAgB,MAAM,CAAC,IAAI,EAAE,MAAM,GAAG,QAAQ,CAAC,QAAQ,CAYtD;AAoBD,eAAO,MAAM,0BAA0B,qBAAqB,CAAC;AAC7D,eAAO,MAAM,uBAAuB,wBAAwB,CAAC;AAC7D,eAAO,MAAM,mCAAmC,8BAA8B,CAAC;AAC/E,eAAO,MAAM,oCAAoC,+BAA+B,CAAC;AAEjF,4DAA4D;AAC5D,wBAAgB,WAAW,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,IAAI,CAEnF;AAED,+EAA+E;AAC/E,wBAAgB,WAAW,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAKlF;AAID;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,EAAE,EAAE,QAAQ,CAAC,QAAQ,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI,CAmB1E"}

package/dist/indexer/db.js

@@ -72,6 +72,7 @@ CREATE TABLE IF NOT EXISTS test_mappings (
 CREATE TABLE IF NOT EXISTS symbol_refs (
   id          INTEGER PRIMARY KEY AUTOINCREMENT,
   caller_id   INTEGER NOT NULL REFERENCES symbols(id) ON DELETE CASCADE,
+  file_id     INTEGER REFERENCES files(id) ON DELETE CASCADE,
   callee_id   INTEGER REFERENCES symbols(id),
   callee_name TEXT    NOT NULL,
   call_line   INTEGER NOT NULL,
@@ -80,7 +81,10 @@ CREATE TABLE IF NOT EXISTS symbol_refs (
   resolved_type_signature TEXT,
   resolved_return_type TEXT,
   definition_uri TEXT,
-  definition_path TEXT
+  definition_path TEXT,
+  definition_line INTEGER,
+  definition_character INTEGER,
+  resolution_method TEXT NOT NULL DEFAULT 'unresolved'
 );
 
 -- Semantic relationships between symbols (extends, implements, etc.).
@@ -94,12 +98,16 @@ CREATE TABLE IF NOT EXISTS symbol_relationships (
   line               INTEGER NOT NULL,
   character          INTEGER,
   definition_uri     TEXT,
-  definition_path    TEXT
+  definition_path    TEXT,
+  definition_line    INTEGER,
+  definition_character INTEGER,
+  resolution_method  TEXT NOT NULL DEFAULT 'unresolved'
 );
 CREATE INDEX IF NOT EXISTS idx_symbol_rels_source ON symbol_relationships(source_symbol_id);
 CREATE INDEX IF NOT EXISTS idx_symbol_rels_target ON symbol_relationships(target_symbol_id);
 CREATE INDEX IF NOT EXISTS idx_symbol_rels_type ON symbol_relationships(relationship_type);
 CREATE INDEX IF NOT EXISTS idx_symbol_rels_file_id ON symbol_relationships(file_id);
+CREATE INDEX IF NOT EXISTS idx_symbol_rels_resolution_method ON symbol_relationships(resolution_method);
 
 -- Type-usage references from symbols to type definitions.
 CREATE TABLE IF NOT EXISTS type_refs (
@@ -114,7 +122,10 @@ CREATE TABLE IF NOT EXISTS type_refs (
   ref_character           INTEGER,
   resolved_type_signature TEXT,
   definition_uri          TEXT,
-  definition_path         TEXT
+  definition_path         TEXT,
+  definition_line         INTEGER,
+  definition_character    INTEGER,
+  resolution_method       TEXT NOT NULL DEFAULT 'unresolved'
 );
 CREATE INDEX IF NOT EXISTS idx_type_refs_type_name ON type_refs(type_name);
 CREATE INDEX IF NOT EXISTS idx_type_refs_type_name_bare ON type_refs(type_name_bare);
@@ -333,11 +344,26 @@ const ENRICHMENT_SCHEMA_MIGRATIONS = [
     { table: 'external_symbols', column: 'definition_uri', sql: 'ALTER TABLE external_symbols ADD COLUMN definition_uri TEXT' },
     { table: 'external_symbols', column: 'definition_path', sql: 'ALTER TABLE external_symbols ADD COLUMN definition_path TEXT' },
     { table: 'symbol_relationships', column: 'character', sql: 'ALTER TABLE symbol_relationships ADD COLUMN character INTEGER' },
+    // LSP-first ref resolution columns
+    { table: 'symbol_refs', column: 'file_id', sql: 'ALTER TABLE symbol_refs ADD COLUMN file_id INTEGER REFERENCES files(id) ON DELETE CASCADE' },
+    { table: 'symbol_refs', column: 'definition_line', sql: 'ALTER TABLE symbol_refs ADD COLUMN definition_line INTEGER' },
+    { table: 'symbol_refs', column: 'definition_character', sql: 'ALTER TABLE symbol_refs ADD COLUMN definition_character INTEGER' },
+    { table: 'symbol_refs', column: 'resolution_method', sql: "ALTER TABLE symbol_refs ADD COLUMN resolution_method TEXT NOT NULL DEFAULT 'unresolved'" },
+    { table: 'type_refs', column: 'definition_line', sql: 'ALTER TABLE type_refs ADD COLUMN definition_line INTEGER' },
+    { table: 'type_refs', column: 'definition_character', sql: 'ALTER TABLE type_refs ADD COLUMN definition_character INTEGER' },
+    { table: 'type_refs', column: 'resolution_method', sql: "ALTER TABLE type_refs ADD COLUMN resolution_method TEXT NOT NULL DEFAULT 'unresolved'" },
+    { table: 'symbol_relationships', column: 'definition_line', sql: 'ALTER TABLE symbol_relationships ADD COLUMN definition_line INTEGER' },
+    { table: 'symbol_relationships', column: 'definition_character', sql: 'ALTER TABLE symbol_relationships ADD COLUMN definition_character INTEGER' },
+    { table: 'symbol_relationships', column: 'resolution_method', sql: "ALTER TABLE symbol_relationships ADD COLUMN resolution_method TEXT NOT NULL DEFAULT 'unresolved'" },
 ];
 const ENRICHMENT_INDEX_MIGRATIONS = [
     'CREATE INDEX IF NOT EXISTS idx_symbols_definition_path ON symbols(definition_path)',
     'CREATE INDEX IF NOT EXISTS idx_symbol_refs_definition_path ON symbol_refs(definition_path)',
     'CREATE INDEX IF NOT EXISTS idx_external_symbols_definition_path ON external_symbols(definition_path)',
+    'CREATE INDEX IF NOT EXISTS idx_symbol_refs_file_id ON symbol_refs(file_id)',
+    'CREATE INDEX IF NOT EXISTS idx_symbol_refs_resolution_method ON symbol_refs(resolution_method)',
+    'CREATE INDEX IF NOT EXISTS idx_type_refs_resolution_method ON type_refs(resolution_method)',
+    'CREATE INDEX IF NOT EXISTS idx_symbol_rels_resolution_method ON symbol_relationships(resolution_method)',
 ];
 // ─── Public API ───────────────────────────────────────────────────────────────
 /**

package/dist/indexer/db.js.map

@@ -1 +1 @@
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+{"version":3,"file":"db.js","sourceRoot":"","sources":["../../src/indexer/db.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,QAAQ,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,aAAa,EAAE,MAAM,aAAa,CAAC;AAE5C,MAAM,UAAU,GAAG,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AAKlD,gFAAgF;AAEhF,MAAM,GAAG,GAAG;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CA6TX,CAAC;AAEF,MAAM,4BAA4B,GAA0D;IAC1F,EAAE,KAAK,EAAE,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAG,EAAE,8DAA8D,EAAE;IACzG,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,yBAAyB,EAAE,GAAG,EAAE,6DAA6D,EAAE;IAC3H,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,sBAAsB,EAAE,GAAG,EAAE,0DAA0D,EAAE;IACrH,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,gBAAgB,EAAE,GAAG,EAAE,oDAAoD,EAAE;IACzG,EAAE,KAAK,EAAE,SAAS,EAAE,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,qDAAqD,EAAE;IAC3G,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,EAAE,6EAA6E,EAAE;IACjI,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,yBAAyB,EAAE,GAAG,EAAE,iEAAiE,EAAE;IACnI,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,sBAAsB,EAAE,GAAG,EAAE,8DAA8D,EAAE;IAC7H,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,gBAAgB,EAAE,GAAG,EAAE,wDAAwD,EAAE;IACjH,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,yDAAyD,EAAE;IACnH,EAAE,KAAK,EAAE,kBAAkB,EAAE,MAAM,EAAE,yBAAyB,EAAE,GAAG,EAAE,sEAAsE,EAAE;IAC7I,EAAE,KAAK,EAAE,kBAAkB,EAAE,MAAM,EAAE,sBAAsB,EAAE,GAAG,EAAE,mEAAmE,EAAE;IACvI,EAAE,KAAK,EAAE,kBAAkB,EAAE,MAAM,EAAE,gBAAgB,EAAE,GAAG,EAAE,6DAA6D,EAAE;IAC3H,EAAE,KAAK,EAAE,kBAAkB,EAAE,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,8DAA8D,EAAE;IAC7H,EAAE,KAAK,EAAE,sBAAsB,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,EAAE,+DAA+D,EAAE;IAC5H,mCAAmC;IACnC,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,SAAS,EAAE,GAAG,EAAE,2FAA2F,EAAE;IAC7I,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,4DAA4D,EAAE;IACtH,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,sBAAsB,EAAE,GAAG,EAAE,iEAAiE,EAAE;IAChI,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,EAAE,mBAAmB,EAAE,GAAG,EAAE,yFAAyF,EAAE;IACrJ,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,0DAA0D,EAAE;IAClH,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE,sBAAsB,EAAE,GAAG,EAAE,+DAA+D,EAAE;IAC5H,EAAE,KAAK,EAAE,WAAW,EAAE,MAAM,EAAE,mBAAmB,EAAE,GAAG,EAAE,uFAAuF,EAAE;IACjJ,EAAE,KAAK,EAAE,sBAAsB,EAAE,MAAM,EAAE,iBAAiB,EAAE,GAAG,EAAE,qEAAqE,EAAE;IACxI,EAAE,KAAK,EAAE,sBAAsB,EAAE,MAAM,EAAE,sBAAsB,EAAE,GAAG,EAAE,0EAA0E,EAAE;IAClJ,EAAE,KAAK,EAAE,sBAAsB,EAAE,MAAM,EAAE,mBAAmB,EAAE,GAAG,EAAE,kGAAkG,EAAE;CACxK,CAAC;AAEF,MAAM,2BAA2B,GAAG;IAClC,oFAAoF;IACpF,4FAA4F;IAC5F,sGAAsG;IACtG,4EAA4E;IAC5E,gGAAgG;IAChG,4FAA4F;IAC5F,yGAAyG;CAC1G,CAAC;AAEF,iFAAiF;AAEjF;;;;;GAKG;AACH,MAAM,UAAU,MAAM,CAAC,IAAY;IACjC,MAAM,EAAE,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,CAAC;IAE9B,sEAAsE;IACtE,EAAE,CAAC,MAAM,CAAC,oBAAoB,CAAC,CAAC;IAChC,EAAE,CAAC,MAAM,CAAC,mBAAmB,CAAC,CAAC;IAE/B,6CAA6C;IAC7C,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IACb,sBAAsB,CAAC,EAAE,CAAC,CAAC;IAE3B,OAAO,EAAE,CAAC;AACZ,CAAC;AAED,SAAS,sBAAsB,CAAC,EAAqB;IACnD,KAAK,MAAM,SAAS,IAAI,4BAA4B,EAAE,CAAC;QACrD,IAAI,CAAC,cAAc,CAAC,EAAE,EAAE,SAAS,CAAC,KAAK,EAAE,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC;YAC3D,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;QACzB,CAAC;IACH,CAAC;IACD,KAAK,MAAM,cAAc,IAAI,2BAA2B,EAAE,CAAC;QACzD,EAAE,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC;IAC1B,CAAC;AACH,CAAC;AAED,SAAS,cAAc,CAAC,EAAqB,EAAE,KAAa,EAAE,MAAc;IAC1E,MAAM,IAAI,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,KAAK,GAAG,CAA4B,CAAC;IAC1E,OAAO,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,IAAI,KAAK,MAAM,CAAC,CAAC;AACjD,CAAC;AAED,mFAAmF;AAEnF,MAAM,CAAC,MAAM,0BAA0B,GAAG,kBAAkB,CAAC;AAC7D,MAAM,CAAC,MAAM,uBAAuB,GAAG,qBAAqB,CAAC;AAC7D,MAAM,CAAC,MAAM,mCAAmC,GAAG,2BAA2B,CAAC;AAC/E,MAAM,CAAC,MAAM,oCAAoC,GAAG,4BAA4B,CAAC;AAEjF,4DAA4D;AAC5D,MAAM,UAAU,WAAW,CAAC,EAAqB,EAAE,GAAW,EAAE,KAAa;IAC3E,EAAE,CAAC,OAAO,CAAC,6DAA6D,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;AAC5F,CAAC;AAED,+EAA+E;AAC/E,MAAM,UAAU,WAAW,CAAC,EAAqB,EAAE,GAAW;IAC5D,MAAM,GAAG,GAAG,EAAE,CAAC,OAAO,CAAC,2CAA2C,CAAC,CAAC,GAAG,CAAC,GAAG,CAE9D,CAAC;IACd,OAAO,GAAG,EAAE,KAAK,CAAC;AACpB,CAAC;AAED,iFAAiF;AAEjF;;;;;;;;;;;GAWG;AACH,MAAM,UAAU,gBAAgB,CAAC,EAAqB,EAAE,IAAY;IAClE,wCAAwC;IACxC,yFAAyF;IACzF,MAAM,SAAS,GAAG,UAAU,CAAC,YAAY,CAA0C,CAAC;IACpF,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAEnB,EAAE,CAAC,IAAI,CAAC;;wBAEc,IAAI;;;wBAGJ,IAAI;;;wBAGJ,IAAI;;GAEzB,CAAC,CAAC;IAEH,WAAW,CAAC,EAAE,EAAE,gBAAgB,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC;AAClD,CAAC"}

package/dist/indexer/extractors/php.js

@@ -169,7 +169,11 @@ function extractPhpFunctionTypeRefs(funcNode, refs) {
     }
 }
 function extractPhpTypeName(typeNode) {
-    if (typeNode.type === 'named_type' || typeNode.type === 'qualified_name' || typeNode.type === 'name')
+    if (typeNode.type === 'named_type'
+        || typeNode.type === 'qualified_name'
+        || typeNode.type === 'name'
+        || typeNode.type === 'primitive_type'
+        || typeNode.type === 'optional_type')
         return typeNode.text;
     if (typeNode.type === 'nullable_type') {
         const inner = typeNode.namedChildren[0];

package/dist/indexer/extractors/php.js.map

@@ -1 +1 @@
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package/dist/indexer/index.d.ts

@@ -1,11 +1,22 @@
 /**
  * @module indexer/index
  *
- * The `IndexBuilder` class orchestrates the full indexing pipeline:
- *   walk → parse → extract → resolve → persist
+ * The `IndexBuilder` class is a **façade** over the composable
+ * `IndexPipeline` and its stage objects.
  *
- * It also supports incremental updates (`update()`) and a stub for
- * LLM-summary ingestion (`ingestSummary()`).
+ * For full builds, `build()` delegates entirely to the pipeline which
+ * enforces the data-dependency chain:
+ * ```
+ * SourceIndexStage → DocsIndexStage → ImportResolutionStage
+ *   → DependencyApiStage → LspEnrichmentStage → ResolutionStage
+ *   → TestMapStage → HistoryStage → EmbeddingStage
+ * ```
+ *
+ * For incremental updates, `update()` uses stage-extracted helpers
+ * while managing the changed-file diff itself.
+ *
+ * The enrichment → resolution ordering is **load-bearing** and enforced
+ * structurally by the pipeline rather than by call-site discipline.
  */
 import type { WalkerConfig } from './walker.js';
 import type { EmbeddingProvider } from './embedder.js';
@@ -22,7 +33,10 @@ interface IndexBuilderOptions {
     lsp?: EffectiveLspSettings;
 }
 /**
- * Orchestrates the full M1 indexing pipeline.
+ * Façade over the composable `IndexPipeline`.
+ *
+ * Preserves backward-compatible public API while internally delegating to
+ * pipeline stages for the actual work.
  *
  * @example
  * ```ts
@@ -33,8 +47,6 @@ interface IndexBuilderOptions {
 export declare class IndexBuilder {
     private readonly dbPath;
     private readonly walkerConfig;
-    private readonly pool;
-    private readonly resolver;
     private readonly embedder;
     private readonly history;
     private readonly indexDependencies;
@@ -43,90 +55,30 @@ export declare class IndexBuilder {
     private readonly lspSettings;
     constructor(dbPath: string, walkerConfig: WalkerConfig, embedder?: EmbeddingProvider, embeddingModelOrOptions?: string | IndexBuilderOptions);
     /**
-     * Performs a full build: walks all files, parses them, extracts
-     * symbols/imports/callRefs, resolves imports, and persists everything to
-     * the database.
+     * Performs a full build by running the composable pipeline.
+     *
+     * The pipeline enforces the enrichment → resolution data-dependency
+     * chain structurally (by stage ordering), not by convention.
      */
     build(): Promise<void>;
     /**
      * Incrementally re-processes only the listed files and updates the DB.
-     * Symbols and imports for changed files are deleted then re-inserted.
+     *
+     * Delegates to the same pipeline as `build()` — each stage handles
+     * `'update'` mode by operating only on the changed-file set.
      *
      * @param changedFiles  Absolute paths of files that have changed.
      */
     update(changedFiles: string[]): Promise<void>;
     /**
      * Writes an LLM-generated summary for a symbol to `symbol_summaries`.
-     * If an `EmbeddingProvider` was configured, also embeds the summary text
-     * and persists it to `symbol_semantic_embeddings`.
-     *
-     * @param symbolId  Row ID of the symbol in the `symbols` table.
-     * @param summary   Natural-language summary text.
-     * @param model     Name of the model that produced the summary.
      */
     ingestSummary(symbolId: number, summary: string, model?: string): Promise<void>;
     ingestCoverage(reportPath: string, format: CoverageFormat, commitSha?: string): Promise<void>;
-    /** Parse one file, extract symbols/imports/callRefs, and insert into the DB. */
-    private processFile;
-    private processDocumentationFile;
-    private upsertSeededDocumentationNote;
-    private removeStaleDocumentation;
-    private deleteDocumentationByPath;
-    private deleteDocumentationById;
-    private deleteDocSectionEmbeddings;
-    /**
-     * Remove orphaned rows from the `symbol_embeddings` vec0 table for symbols
-     * that have been deleted (e.g. file re-processed or removed).
-     */
-    private deleteSymbolEmbeddings;
-    /**
-     * Second pass: resolve raw_import strings to file IDs in the
-     * `file_imports.resolved_id` column.  Also populates `external_deps` for
-     * any import that resolves to an external package.
-     */
-    private resolveImports;
-    private indexDependencyDeclarations;
-    private createLspEnrichmentCoordinator;
-    private enrichProjectRefs;
     private resolveBranch;
     private saveLastKnownHead;
-    private saveDocsAutoNotesSetting;
     private readGitValue;
-    private loadDirectDependencies;
-    private readInstalledPackageVersion;
-    private collectDeclarationFiles;
-    private shouldIndexDependencySymbol;
-    private hasImplementationBody;
-    private loadBuildCheckpoint;
-    private saveBuildCheckpoint;
-    /**
-     * Embed structural symbol signatures in batches and persist results to
-     * the `symbol_embeddings` vec0 virtual table.
-     *
-     * Also stores the embedding model name and dims in `lore_meta` and
-     * creates the vec0 tables if they don't exist yet.
-     *
-     * @param fileIds  When provided, only embed symbols belonging to these file
-     *                 IDs (incremental mode). When omitted, embeds all symbols
-     *                 (full-build mode).
-     */
-    private embedStructural;
-    /**
-     * Embed documentation sections in batches and persist results to
-     * the `doc_section_embeddings` vec0 virtual table.
-     *
-     * @param docIds  When provided, only embed sections belonging to these
-     *                doc IDs (incremental mode). When omitted, embeds all
-     *                sections (full-build mode).
-     */
-    private embedDocumentation;
-    /**
-     * Embed commit messages that haven't been embedded yet.
-     *
-     * Uses a `LEFT JOIN` against `commit_embeddings` to skip commits whose
-     * embeddings already exist, so only newly-ingested commits are processed.
-     */
-    private embedCommitMessages;
+    private gatherDbStats;
 }
 export {};
 //# sourceMappingURL=index.d.ts.map