@inflexa-ai/harness 0.45.0 → 0.46.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (802) hide show
  1. package/README.md +6 -3
  2. package/dist/agents/conversation-agent.d.ts +19 -3
  3. package/dist/agents/conversation-agent.js +49 -30
  4. package/dist/agents/report-session-agent.d.ts +15 -15
  5. package/dist/agents/report-session-agent.js +23 -15
  6. package/dist/agents/sandbox/index.d.ts +1 -1
  7. package/dist/agents/sandbox/index.js +1 -1
  8. package/dist/agents/sandbox/shared.d.ts +35 -16
  9. package/dist/agents/sandbox/shared.js +63 -24
  10. package/dist/agents/sandbox/translational-safety-agent.js +26 -0
  11. package/dist/agents/sandbox/types.d.ts +26 -3
  12. package/dist/agents/sandbox/validate-skills.d.ts +2 -2
  13. package/dist/agents/sandbox/validate-skills.js +3 -1
  14. package/dist/agents/sandbox-catalog.d.ts +16 -2
  15. package/dist/agents/sandbox-catalog.js +22 -3
  16. package/dist/agents/system-prompt.d.ts +2 -2
  17. package/dist/app/approve-plan.d.ts +5 -2
  18. package/dist/app/approve-plan.js +1 -1
  19. package/dist/app/chat-turn-workflow.d.ts +114 -0
  20. package/dist/app/chat-turn-workflow.js +307 -0
  21. package/dist/app/chat-turn.d.ts +85 -57
  22. package/dist/app/chat-turn.js +125 -99
  23. package/dist/app/data-profile-orientation.js +10 -8
  24. package/dist/app/data-profile-view.d.ts +4 -4
  25. package/dist/app/data-profile-view.js +9 -8
  26. package/dist/app/in-process-turn.d.ts +42 -0
  27. package/dist/app/in-process-turn.js +139 -0
  28. package/dist/app/message-assembly.d.ts +10 -4
  29. package/dist/app/message-assembly.js +13 -8
  30. package/dist/app/report-session-runtime.d.ts +4 -4
  31. package/dist/app/report-session-runtime.js +36 -21
  32. package/dist/app/spawn-report-session.d.ts +33 -28
  33. package/dist/app/spawn-report-session.js +25 -40
  34. package/dist/app/synthesize-run.d.ts +22 -16
  35. package/dist/app/synthesize-run.js +41 -35
  36. package/dist/app/work.d.ts +96 -0
  37. package/dist/app/work.js +147 -0
  38. package/dist/auth/local-auth-context.d.ts +1 -3
  39. package/dist/auth/local-auth-context.js +1 -3
  40. package/dist/auth/local-run-authorizer.d.ts +1 -1
  41. package/dist/auth/local-run-authorizer.js +5 -3
  42. package/dist/auth/types.d.ts +26 -26
  43. package/dist/billing/cached-resolver.d.ts +4 -4
  44. package/dist/billing/run-charge.d.ts +5 -8
  45. package/dist/billing/run-charge.js +2 -2
  46. package/dist/billing/usage-recorder.d.ts +9 -9
  47. package/dist/citations/aggregate.js +1 -1
  48. package/dist/citations/clients/arxiv.d.ts +2 -2
  49. package/dist/citations/clients/arxiv.js +12 -4
  50. package/dist/citations/clients/common.js +4 -2
  51. package/dist/citations/clients/crossref.d.ts +2 -2
  52. package/dist/citations/clients/crossref.js +37 -37
  53. package/dist/citations/clients/doi-registry.js +15 -16
  54. package/dist/citations/clients/pubmed.d.ts +2 -2
  55. package/dist/citations/clients/pubmed.js +20 -13
  56. package/dist/citations/clients/semantic-scholar.d.ts +2 -2
  57. package/dist/citations/clients/semantic-scholar.js +9 -9
  58. package/dist/citations/compare.js +2 -2
  59. package/dist/citations/match.d.ts +2 -2
  60. package/dist/citations/match.js +12 -7
  61. package/dist/citations/normalize.js +35 -26
  62. package/dist/citations/plan.js +6 -2
  63. package/dist/citations/resolve.d.ts +6 -6
  64. package/dist/citations/resolve.js +34 -25
  65. package/dist/citations/types.d.ts +77 -77
  66. package/dist/config/environment-stores.d.ts +10 -8
  67. package/dist/config/resource-limits.js +1 -3
  68. package/dist/contracts/analogy-report.d.ts +7 -7
  69. package/dist/contracts/analogy-report.js +2 -2
  70. package/dist/contracts/chat-events.d.ts +46 -22
  71. package/dist/contracts/chat-events.js +1 -1
  72. package/dist/contracts/chat-frame.d.ts +15 -5
  73. package/dist/contracts/chat-frame.js +67 -40
  74. package/dist/contracts/chat-parts.d.ts +130 -67
  75. package/dist/contracts/chat-parts.js +1 -0
  76. package/dist/contracts/content-url.js +16 -2
  77. package/dist/contracts/data-profile.d.ts +38 -38
  78. package/dist/contracts/index.d.ts +3 -3
  79. package/dist/contracts/index.js +1 -1
  80. package/dist/contracts/message.d.ts +6 -6
  81. package/dist/contracts/organ-system.d.ts +11 -11
  82. package/dist/contracts/part-registry.d.ts +5 -4
  83. package/dist/contracts/part-registry.js +5 -0
  84. package/dist/contracts/profile-vocabulary.d.ts +11 -10
  85. package/dist/contracts/profile-vocabulary.js +10 -3
  86. package/dist/contracts/report-blocks.d.ts +329 -329
  87. package/dist/contracts/report-reference.d.ts +105 -81
  88. package/dist/contracts/report-reference.js +30 -13
  89. package/dist/contracts/schemas/chat-events.d.ts +45 -6
  90. package/dist/contracts/schemas/chat-events.js +16 -0
  91. package/dist/contracts/schemas/chat-parts.d.ts +214 -102
  92. package/dist/contracts/schemas/chat-parts.js +50 -7
  93. package/dist/contracts/schemas/index.d.ts +1 -1
  94. package/dist/contracts/schemas/index.js +1 -1
  95. package/dist/contracts/severity.d.ts +1 -1
  96. package/dist/contracts/structure-source.d.ts +3 -3
  97. package/dist/contracts/structure-source.js +6 -2
  98. package/dist/contracts/subagent-activity.d.ts +2 -2
  99. package/dist/contracts/subagent-activity.js +5 -3
  100. package/dist/contracts/usage.d.ts +2 -2
  101. package/dist/data/safety-panel-schema.d.ts +25 -25
  102. package/dist/data/safety-panel-schema.js +13 -4
  103. package/dist/execution/artifact-metadata.d.ts +23 -15
  104. package/dist/execution/artifact-metadata.js +33 -10
  105. package/dist/execution/artifact-record.d.ts +2 -2
  106. package/dist/execution/artifact-registration.d.ts +5 -5
  107. package/dist/execution/artifact-registry.d.ts +8 -8
  108. package/dist/execution/dbos-run-launcher.d.ts +24 -4
  109. package/dist/execution/dbos-run-launcher.js +58 -4
  110. package/dist/execution/dbos-workflow-purger.d.ts +7 -6
  111. package/dist/execution/dbos-workflow-purger.js +29 -21
  112. package/dist/execution/input-signature.d.ts +2 -2
  113. package/dist/execution/post-step-pipeline.d.ts +9 -9
  114. package/dist/execution/post-step-pipeline.js +1 -1
  115. package/dist/execution/post-step.js +2 -2
  116. package/dist/execution/reconcile-manifest.d.ts +4 -4
  117. package/dist/execution/reconcile-manifest.js +3 -2
  118. package/dist/execution/run-authorizer.d.ts +46 -37
  119. package/dist/execution/run-authorizer.js +8 -8
  120. package/dist/execution/run-canceler.d.ts +39 -17
  121. package/dist/execution/run-canceler.js +137 -28
  122. package/dist/execution/run-end-record.d.ts +29 -0
  123. package/dist/execution/run-end-record.js +27 -0
  124. package/dist/execution/run-event-parts.d.ts +0 -8
  125. package/dist/execution/run-event-parts.js +29 -24
  126. package/dist/execution/run-event-stream.d.ts +8 -8
  127. package/dist/execution/run-event-stream.js +3 -4
  128. package/dist/execution/run-launcher.d.ts +4 -4
  129. package/dist/execution/run-synthesis.d.ts +49 -48
  130. package/dist/execution/run-synthesis.js +96 -255
  131. package/dist/execution/staged-input.d.ts +2 -2
  132. package/dist/execution/step-summary.d.ts +6 -6
  133. package/dist/execution/step-summary.js +4 -8
  134. package/dist/execution/topo-sort.js +4 -3
  135. package/dist/execution/workflow-purger.d.ts +2 -2
  136. package/dist/index.d.ts +25 -24
  137. package/dist/index.js +36 -37
  138. package/dist/input-sanitization.js +9 -2
  139. package/dist/input-scan/clustering.d.ts +6 -6
  140. package/dist/input-scan/clustering.js +11 -5
  141. package/dist/input-scan/companions.js +3 -2
  142. package/dist/input-scan/detect-sets.d.ts +2 -2
  143. package/dist/input-scan/detect-sets.js +25 -21
  144. package/dist/input-scan/enrich.d.ts +6 -6
  145. package/dist/input-scan/enrich.js +29 -12
  146. package/dist/input-scan/formats.d.ts +2 -2
  147. package/dist/input-scan/formats.js +8 -2
  148. package/dist/input-scan/markers.d.ts +2 -2
  149. package/dist/input-scan/markers.js +14 -5
  150. package/dist/input-scan/menu.d.ts +10 -10
  151. package/dist/input-scan/menu.js +0 -0
  152. package/dist/input-scan/quarantine.d.ts +2 -2
  153. package/dist/input-scan/quarantine.js +23 -18
  154. package/dist/input-scan/readout-budget.d.ts +2 -2
  155. package/dist/input-scan/readout-budget.js +1 -1
  156. package/dist/input-scan/readout.d.ts +2 -2
  157. package/dist/input-scan/readout.js +47 -34
  158. package/dist/input-scan/scan.d.ts +2 -2
  159. package/dist/input-scan/scan.js +7 -5
  160. package/dist/input-scan/set-types.d.ts +28 -28
  161. package/dist/input-scan/shapes.d.ts +4 -4
  162. package/dist/input-scan/shapes.js +0 -0
  163. package/dist/input-scan/templates.d.ts +10 -10
  164. package/dist/input-scan/templates.js +30 -22
  165. package/dist/input-scan/tokens.d.ts +6 -4
  166. package/dist/input-scan/tokens.js +100 -38
  167. package/dist/input-scan/types.d.ts +22 -22
  168. package/dist/lib/async-utils.d.ts +3 -7
  169. package/dist/lib/async-utils.js +5 -9
  170. package/dist/lib/cache.js +1 -1
  171. package/dist/lib/chrome.d.ts +46 -6
  172. package/dist/lib/console-logger.js +2 -2
  173. package/dist/lib/db-result.d.ts +22 -6
  174. package/dist/lib/db-result.js +9 -13
  175. package/dist/lib/eyes.d.ts +4 -4
  176. package/dist/lib/eyes.js +1 -1
  177. package/dist/lib/fs-helpers.js +18 -6
  178. package/dist/lib/fs-result.d.ts +1 -0
  179. package/dist/lib/fs-result.js +5 -6
  180. package/dist/lib/hooks.d.ts +23 -7
  181. package/dist/lib/hooks.js +17 -3
  182. package/dist/lib/host-concurrency.js +3 -2
  183. package/dist/lib/logger.d.ts +2 -2
  184. package/dist/lib/logger.js +2 -1
  185. package/dist/lib/metrics.d.ts +1 -1
  186. package/dist/lib/null-proto.d.ts +6 -0
  187. package/dist/lib/null-proto.js +17 -0
  188. package/dist/lib/otel-spans.d.ts +1 -1
  189. package/dist/lib/otel-spans.js +9 -5
  190. package/dist/lib/otel.d.ts +4 -2
  191. package/dist/lib/otel.js +10 -2
  192. package/dist/lib/page-capture.d.ts +8 -8
  193. package/dist/lib/page-capture.js +9 -4
  194. package/dist/lib/parse-json.d.ts +5 -0
  195. package/dist/lib/parse-json.js +12 -0
  196. package/dist/lib/present.d.ts +12 -0
  197. package/dist/lib/present.js +39 -0
  198. package/dist/lib/rate-limit.d.ts +4 -4
  199. package/dist/lib/rate-limit.js +12 -13
  200. package/dist/lib/regulatory-corpus/fetch-fda-guidance.d.ts +4 -4
  201. package/dist/lib/regulatory-corpus/fetch-fda-guidance.js +4 -10
  202. package/dist/lib/regulatory-corpus/fetch-ich.d.ts +4 -4
  203. package/dist/lib/regulatory-corpus/fetch-ich.js +18 -14
  204. package/dist/lib/regulatory-corpus/normalize-whitespace.d.ts +6 -0
  205. package/dist/lib/regulatory-corpus/normalize-whitespace.js +41 -0
  206. package/dist/lib/regulatory-corpus.d.ts +10 -10
  207. package/dist/lib/regulatory-corpus.js +3 -1
  208. package/dist/lib/result.d.ts +10 -11
  209. package/dist/lib/result.js +15 -13
  210. package/dist/lib/storage.d.ts +2 -2
  211. package/dist/lib/test/async-iterable.d.ts +9 -0
  212. package/dist/lib/test/async-iterable.js +28 -0
  213. package/dist/lib/test/request-url.d.ts +5 -0
  214. package/dist/lib/test/request-url.js +7 -0
  215. package/dist/lib/test/result-assert.d.ts +12 -0
  216. package/dist/lib/test/result-assert.js +17 -0
  217. package/dist/lib/test/text-shapes.d.ts +24 -0
  218. package/dist/lib/test/text-shapes.js +63 -0
  219. package/dist/lib/text.d.ts +22 -0
  220. package/dist/lib/text.js +68 -0
  221. package/dist/lib/thrown.d.ts +18 -0
  222. package/dist/lib/thrown.js +30 -0
  223. package/dist/lib/unknown-array.d.ts +6 -0
  224. package/dist/lib/unknown-array.js +8 -0
  225. package/dist/lib/unknown-containers.d.ts +14 -0
  226. package/dist/lib/unknown-containers.js +17 -0
  227. package/dist/lib/unknown-text.d.ts +8 -0
  228. package/dist/lib/unknown-text.js +28 -0
  229. package/dist/lib/zod-issue-shape.d.ts +1 -1
  230. package/dist/lib/zod-issue-shape.js +31 -31
  231. package/dist/lib/zod-issues.d.ts +3 -3
  232. package/dist/lib/zod-issues.js +30 -17
  233. package/dist/literature/sources/arxiv.d.ts +6 -6
  234. package/dist/literature/sources/arxiv.js +92 -35
  235. package/dist/literature/sources/http.d.ts +2 -2
  236. package/dist/literature/sources/http.js +16 -15
  237. package/dist/literature/sources/pubmed.d.ts +16 -16
  238. package/dist/literature/sources/pubmed.js +96 -61
  239. package/dist/literature/sources/semantic-scholar.d.ts +8 -8
  240. package/dist/literature/sources/semantic-scholar.js +22 -13
  241. package/dist/loop/accounting.d.ts +63 -0
  242. package/dist/loop/accounting.js +141 -0
  243. package/dist/loop/call-policy.d.ts +73 -0
  244. package/dist/loop/call-policy.js +109 -0
  245. package/dist/loop/chat-stream.d.ts +62 -0
  246. package/dist/loop/chat-stream.js +237 -0
  247. package/dist/loop/compaction.d.ts +14 -9
  248. package/dist/loop/compaction.js +17 -0
  249. package/dist/loop/metrics.d.ts +12 -15
  250. package/dist/loop/metrics.js +14 -26
  251. package/dist/loop/run-loop.d.ts +233 -0
  252. package/dist/loop/run-loop.js +770 -0
  253. package/dist/loop/sub-agent.d.ts +61 -0
  254. package/dist/loop/sub-agent.js +161 -0
  255. package/dist/loop/tool-adapter.d.ts +98 -0
  256. package/dist/loop/tool-adapter.js +364 -0
  257. package/dist/loop/tool-detail.d.ts +1 -1
  258. package/dist/loop/tool-detail.js +6 -5
  259. package/dist/loop/tool-outcome.d.ts +1 -1
  260. package/dist/loop/tool-output.d.ts +4 -4
  261. package/dist/loop/tool-output.js +2 -2
  262. package/dist/loop/turn-credentials.d.ts +34 -0
  263. package/dist/loop/turn-credentials.js +73 -0
  264. package/dist/loop/types.d.ts +34 -37
  265. package/dist/loop/types.js +2 -7
  266. package/dist/memory/ai-sdk-message-storage.d.ts +5 -5
  267. package/dist/memory/ai-sdk-message-storage.js +13 -11
  268. package/dist/memory/card-builders.d.ts +14 -14
  269. package/dist/memory/card-builders.js +19 -15
  270. package/dist/memory/conversation-display-recorder.d.ts +22 -6
  271. package/dist/memory/conversation-display-recorder.js +64 -20
  272. package/dist/memory/conversation-display-replay.js +3 -2
  273. package/dist/memory/conversation-display-storage.d.ts +15 -7
  274. package/dist/memory/conversation-display-storage.js +141 -36
  275. package/dist/memory/conversation-view.d.ts +4 -4
  276. package/dist/memory/conversation-view.js +5 -4
  277. package/dist/memory/count-tokens.js +10 -8
  278. package/dist/memory/derive-thread-title.d.ts +0 -13
  279. package/dist/memory/derive-thread-title.js +2 -1
  280. package/dist/memory/message-backfill.d.ts +12 -5
  281. package/dist/memory/message-backfill.js +5 -3
  282. package/dist/memory/thread-history.d.ts +66 -24
  283. package/dist/memory/thread-history.js +212 -79
  284. package/dist/memory/thread-store.d.ts +26 -17
  285. package/dist/memory/thread-store.js +15 -9
  286. package/dist/memory/tool-call-integrity.d.ts +2 -2
  287. package/dist/memory/tool-call-integrity.js +4 -3
  288. package/dist/memory/working-memory.d.ts +16 -12
  289. package/dist/memory/working-memory.js +72 -61
  290. package/dist/prompts/briefing.d.ts +63 -9
  291. package/dist/prompts/briefing.js +130 -3
  292. package/dist/prompts/planner.js +13 -2
  293. package/dist/prompts/synthesis-agent.d.ts +1 -1
  294. package/dist/prompts/synthesis-agent.js +6 -14
  295. package/dist/provenance/collector.d.ts +6 -6
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  297. package/dist/provenance/exec-frame.d.ts +2 -2
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  301. package/dist/provenance/types.d.ts +6 -6
  302. package/dist/providers/ai-sdk.d.ts +113 -62
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  316. package/dist/report-model/assert-rules.js +1 -1
  317. package/dist/report-model/authoring-grammar.d.ts +209 -231
  318. package/dist/report-model/block-walk.d.ts +10 -10
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  337. package/dist/report-model/structural-validation.js +12 -4
  338. package/dist/report-model/validate.d.ts +7 -7
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  340. package/dist/report-render/assets.d.ts +2 -2
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  706. package/dist/tools/research/guarded-address.js +149 -0
  707. package/dist/tools/research/inspect-data-profile.d.ts +27 -20
  708. package/dist/tools/research/inspect-data-profile.js +26 -25
  709. package/dist/tools/research/inspect-run.d.ts +54 -27
  710. package/dist/tools/research/inspect-run.js +50 -40
  711. package/dist/tools/research/literature-reviewer.d.ts +8 -7
  712. package/dist/tools/research/literature-reviewer.js +29 -28
  713. package/dist/tools/research/search-arxiv.d.ts +1 -1
  714. package/dist/tools/research/search-arxiv.js +1 -1
  715. package/dist/tools/research/search-github-repos.d.ts +10 -7
  716. package/dist/tools/research/search-github-repos.js +25 -22
  717. package/dist/tools/research/search-semantic-scholar.js +1 -1
  718. package/dist/tools/research/searxng-engine.d.ts +40 -0
  719. package/dist/tools/research/searxng-engine.js +122 -0
  720. package/dist/tools/research/web-fetch.d.ts +127 -0
  721. package/dist/tools/research/web-fetch.js +618 -0
  722. package/dist/tools/research/web-search.d.ts +84 -0
  723. package/dist/tools/research/web-search.js +117 -0
  724. package/dist/tools/sandbox/link-packages.d.ts +11 -7
  725. package/dist/tools/sandbox/link-packages.js +11 -8
  726. package/dist/tools/sandbox/list-available-packages.d.ts +24 -12
  727. package/dist/tools/sandbox/list-available-packages.js +43 -29
  728. package/dist/tools/sandbox/list-available-refs.d.ts +38 -14
  729. package/dist/tools/sandbox/list-available-refs.js +119 -37
  730. package/dist/tools/sandbox/report-blocker.d.ts +30 -37
  731. package/dist/tools/sandbox/report-blocker.js +22 -68
  732. package/dist/tools/sandbox/skills.d.ts +16 -12
  733. package/dist/tools/sandbox/skills.js +16 -12
  734. package/dist/tools/sandbox/submit-file-metadata.d.ts +12 -9
  735. package/dist/tools/sandbox/submit-file-metadata.js +18 -21
  736. package/dist/tools/start-report-session.d.ts +13 -5
  737. package/dist/tools/start-report-session.js +35 -8
  738. package/dist/tools/terminal-text.d.ts +14 -0
  739. package/dist/tools/terminal-text.js +51 -0
  740. package/dist/tools/workspace/decision-record.d.ts +81 -0
  741. package/dist/tools/workspace/decision-record.js +127 -0
  742. package/dist/tools/workspace/edit-file.d.ts +59 -18
  743. package/dist/tools/workspace/edit-file.js +98 -15
  744. package/dist/tools/workspace/execute-command.d.ts +31 -12
  745. package/dist/tools/workspace/execute-command.js +37 -8
  746. package/dist/tools/workspace/file-stat.d.ts +6 -3
  747. package/dist/tools/workspace/grep.d.ts +10 -7
  748. package/dist/tools/workspace/grep.js +9 -3
  749. package/dist/tools/workspace/index.d.ts +1 -0
  750. package/dist/tools/workspace/index.js +1 -0
  751. package/dist/tools/workspace/list-files.d.ts +6 -3
  752. package/dist/tools/workspace/mutator.d.ts +28 -15
  753. package/dist/tools/workspace/mutator.js +107 -53
  754. package/dist/tools/workspace/read-file.d.ts +8 -5
  755. package/dist/tools/workspace/result-bounds.d.ts +5 -5
  756. package/dist/tools/workspace/result-bounds.js +4 -2
  757. package/dist/tools/workspace/run-exec.d.ts +2 -2
  758. package/dist/tools/workspace/run-exec.js +3 -3
  759. package/dist/tools/workspace/scan-inputs.d.ts +8 -5
  760. package/dist/tools/workspace/scan-inputs.js +17 -5
  761. package/dist/tools/workspace/show-file.d.ts +1 -1
  762. package/dist/tools/workspace/show-file.js +2 -1
  763. package/dist/tools/workspace/show-plan.d.ts +8 -5
  764. package/dist/tools/workspace/show-plan.js +9 -8
  765. package/dist/tools/workspace/workspace-search.d.ts +41 -13
  766. package/dist/tools/workspace/workspace-search.js +27 -14
  767. package/dist/tools/workspace/write-file.d.ts +9 -7
  768. package/dist/workflows/execute-analysis-scheduler.d.ts +9 -9
  769. package/dist/workflows/execute-analysis-scheduler.js +6 -3
  770. package/dist/workflows/execute-analysis.d.ts +100 -76
  771. package/dist/workflows/execute-analysis.js +380 -247
  772. package/dist/workflows/pause.d.ts +71 -0
  773. package/dist/workflows/pause.js +173 -0
  774. package/dist/workflows/sandbox-step.d.ts +50 -61
  775. package/dist/workflows/sandbox-step.js +99 -106
  776. package/dist/workflows/test/sql-writes.d.ts +21 -0
  777. package/dist/workflows/test/sql-writes.js +36 -0
  778. package/dist/workspace/filesystem.d.ts +6 -6
  779. package/dist/workspace/filesystem.js +10 -8
  780. package/dist/workspace/paths.d.ts +1 -1
  781. package/dist/workspace/paths.js +15 -4
  782. package/dist/workspace/search-config.d.ts +2 -2
  783. package/dist/workspace/search-config.js +1 -1
  784. package/package.json +25 -22
  785. package/dist/loop/continue-agent.d.ts +0 -40
  786. package/dist/loop/continue-agent.js +0 -38
  787. package/dist/loop/genai-spans.d.ts +0 -47
  788. package/dist/loop/genai-spans.js +0 -134
  789. package/dist/loop/run-agent.d.ts +0 -236
  790. package/dist/loop/run-agent.js +0 -1110
  791. package/dist/loop/run-step.d.ts +0 -29
  792. package/dist/loop/run-step.js +0 -34
  793. package/dist/loop/run-to-terminal.d.ts +0 -66
  794. package/dist/loop/run-to-terminal.js +0 -90
  795. package/dist/loop/tool-mask.d.ts +0 -23
  796. package/dist/loop/tool-mask.js +0 -46
  797. package/dist/providers/streaming-chat.d.ts +0 -32
  798. package/dist/providers/streaming-chat.js +0 -91
  799. package/dist/tasks/derive-table-exec.d.ts +0 -54
  800. package/dist/tasks/derive-table-exec.js +0 -86
  801. package/dist/workflows/suspension.d.ts +0 -32
  802. package/dist/workflows/suspension.js +0 -38
@@ -31,11 +31,15 @@
31
31
  * lands only when the row still holds it. Thus two concurrent turns cannot both land,
32
32
  * and the loser reads the state again.
33
33
  *
34
+ * A persist that names an authoring call stores the result of the call in
35
+ * `cortex_authoring_results`, in the transaction of the document and under the lock
36
+ * of the row. A second persist of the same call finds that result and writes nothing.
37
+ *
34
38
  * A purge of the analysis removes the row through the analysis-id cascade.
35
39
  */
36
- import { err, ok } from "neverthrow";
40
+ import { err, ok, okAsync } from "neverthrow";
37
41
  import { z } from "zod";
38
- import { tryMutation, tryQuery } from "../lib/db-result.js";
42
+ import { tryMutation, tryQuery, withTransaction } from "../lib/db-result.js";
39
43
  import { DraftDocumentSchema } from "../report-model/draft.js";
40
44
  import { parseSnapshot, reduceIssues } from "./snapshot-parse.js";
41
45
  const DerivationSourceSchema = z.object({ path: z.string(), hash: z.string() });
@@ -45,6 +49,7 @@ const DerivationRecordSchema = z.object({
45
49
  sources: z.array(DerivationSourceSchema),
46
50
  scriptHash: z.string(),
47
51
  script: z.string(),
52
+ toolCallId: z.string().optional(),
48
53
  });
49
54
  const DerivationListSchema = z.array(DerivationRecordSchema);
50
55
  const _assertReadError = true;
@@ -155,6 +160,40 @@ export function createReportSessionStateStore({ pool }) {
155
160
  });
156
161
  }
157
162
  function persistDocument(input) {
163
+ const { call } = input;
164
+ if (call === undefined)
165
+ return swapDocument(pool, input);
166
+ return withTransaction(pool, "report-session-state.persistDocument", (client) =>
167
+ // The row lock serializes each persist of the thread, thus a second run of one
168
+ // call waits for the first and then finds its result.
169
+ tryQuery("report-session-state.persistDocument.lock", () => client.query({
170
+ text: `SELECT (SELECT COUNT(*) FROM cortex_authoring_results WHERE thread_id = $1 AND call_key = $2)::int AS held, analysis_id
171
+ FROM cortex_report_session_state WHERE thread_id = $1 FOR UPDATE`,
172
+ values: [input.threadId, call.key],
173
+ })).andThen(({ rows }) => {
174
+ const row = rows[0];
175
+ if (row === undefined)
176
+ return okAsync("absent");
177
+ if (row.held > 0)
178
+ return okAsync("replayed");
179
+ return swapDocument(client, input).andThen((outcome) => outcome !== "persisted"
180
+ ? okAsync(outcome)
181
+ : tryMutation("report-session-state.persistDocument.result", () => client.query({
182
+ text: "INSERT INTO cortex_authoring_results (thread_id, call_key, analysis_id, result) VALUES ($1, $2, $3, $4::jsonb)",
183
+ values: [input.threadId, call.key, row.analysis_id, JSON.stringify(call.result)],
184
+ })).map(() => "persisted"));
185
+ }));
186
+ }
187
+ function readCallResult(threadId, callKey) {
188
+ return tryQuery("report-session-state.readCallResult", () => pool.query({
189
+ text: "SELECT result FROM cortex_authoring_results WHERE thread_id = $1 AND call_key = $2",
190
+ values: [threadId, callKey],
191
+ })).map(({ rows }) => {
192
+ const row = rows[0];
193
+ return row === undefined ? null : { result: row.result };
194
+ });
195
+ }
196
+ function swapDocument(querier, input) {
158
197
  return tryMutation("report-session-state.persistDocument", async () => {
159
198
  // The prior document rides as SQL NULL when absent, thus the compare-and-swap
160
199
  // matches a fresh row whose document column is null. A JSON `null` would be a
@@ -163,7 +202,7 @@ export function createReportSessionStateStore({ pool }) {
163
202
  // One statement tells a conflict from an absence. `existed` counts the row, and
164
203
  // `updated` counts the compare-and-swap. A row that exists but did not update
165
204
  // holds a different prior document, thus a concurrent turn landed first.
166
- const { rows } = await pool.query({
205
+ const { rows } = await querier.query({
167
206
  text: `WITH target AS (
168
207
  SELECT 1 FROM cortex_report_session_state WHERE thread_id = $1
169
208
  ), updated AS (
@@ -241,5 +280,5 @@ export function createReportSessionStateStore({ pool }) {
241
280
  return row.appended > 0 ? "appended" : "duplicate";
242
281
  });
243
282
  }
244
- return { readState, writeSnapshot, persistDocument, stampRendered, stampSeen, appendDerivation };
283
+ return { readState, writeSnapshot, persistDocument, readCallResult, stampRendered, stampSeen, appendDerivation };
245
284
  }
@@ -29,9 +29,9 @@ import { type DbError } from "../lib/db-result.js";
29
29
  import type { Logger } from "../lib/logger.js";
30
30
  import type { ReportSnapshot } from "../report-model/reference-resolver.js";
31
31
  import { type SchemaIssue } from "./snapshot-parse.js";
32
- export type { SchemaIssue };
32
+ export type { SchemaIssue } from "./snapshot-parse.js";
33
33
  /** The anchor and the payload of a version to record. */
34
- export interface RecordVersionInput {
34
+ export type RecordVersionInput = {
35
35
  /** The block document. It rides as `unknown`, and the record parses it. */
36
36
  readonly document: unknown;
37
37
  /** The pinned snapshot, stored as given. */
@@ -44,16 +44,21 @@ export interface RecordVersionInput {
44
44
  readonly parentSeq: number | null;
45
45
  /** The earlier version that this one reuses. The parent must belong to the same analysis. */
46
46
  readonly parentVersionId?: string;
47
- }
47
+ /**
48
+ * The id of the version when the record makes the row. A record that replaces the
49
+ * version of the thread keeps the stored id. Omitted, the record mints a random id.
50
+ */
51
+ readonly versionId?: string;
52
+ };
48
53
  /** The stable reference of a recorded version, and how the record landed. */
49
- export interface RecordedVersionRef {
54
+ export type RecordedVersionRef = {
50
55
  readonly versionId: string;
51
56
  /**
52
57
  * `created` minted the row. `replaced` wrote over the one version of the
53
58
  * thread, under the same version id.
54
59
  */
55
60
  readonly outcome: "created" | "replaced";
56
- }
61
+ };
57
62
  /**
58
63
  * A record the store refuses as data, before or in place of a row. Distinct from
59
64
  * `DbError`: the request describes a version that the store will not write.
@@ -97,7 +102,7 @@ export type VersionReadError = {
97
102
  readonly issues: readonly SchemaIssue[];
98
103
  };
99
104
  /** One recorded version, as the store gives it back. */
100
- export interface RecordedVersion {
105
+ export type RecordedVersion = {
101
106
  readonly versionId: string;
102
107
  readonly analysisId: string;
103
108
  readonly threadId: string;
@@ -108,8 +113,8 @@ export interface RecordedVersion {
108
113
  readonly document: ReportDocument;
109
114
  readonly snapshot: ReportSnapshot;
110
115
  readonly createdAt: Date;
111
- }
112
- export interface ReportVersionStore {
116
+ };
117
+ export type ReportVersionStore = {
113
118
  /**
114
119
  * Record a version. The record parses the document, refuses a malformed value
115
120
  * as data with no row, and refuses a parent from a different analysis. It reads
@@ -122,11 +127,11 @@ export interface ReportVersionStore {
122
127
  getVersion(versionId: string): ResultAsync<RecordedVersion | null, DbError | VersionReadError>;
123
128
  /** The one version of a thread, or `null` for a thread with no version. */
124
129
  getThreadVersion(threadId: string): ResultAsync<RecordedVersion | null, DbError | VersionReadError>;
125
- }
126
- export interface ReportVersionStoreDeps {
130
+ };
131
+ export type ReportVersionStoreDeps = {
127
132
  readonly pool: Pool;
128
133
  readonly logger?: Logger;
129
- }
134
+ };
130
135
  /**
131
136
  * Create a `ReportVersionStore` bound to a Postgres pool. The
132
137
  * `cortex_report_versions` table is provisioned by the state-init DDL.
@@ -50,8 +50,10 @@ const VERSION_COLUMNS = "version_id, analysis_id, thread_id, parent_thread_id, p
50
50
  * It writes neither `version_id` nor `created_at`: the version keeps its name, and
51
51
  * the row keeps the time of its first record.
52
52
  *
53
- * The returned id names the row that stands. It equals the minted id on the insert
54
- * arm alone, thus the caller reads which arm ran.
53
+ * The returned id names the row that stands. It equals the given id on the insert
54
+ * arm, and the stored id on the replace arm, thus the caller reads which arm ran. A
55
+ * second record with the id of the stored version reads as the record that made it,
56
+ * thus a rerun of one durable step does not read as a replacement.
55
57
  */
56
58
  const RECORD_SQL = `INSERT INTO cortex_report_versions
57
59
  (version_id, analysis_id, thread_id, parent_thread_id, parent_seq,
@@ -115,7 +117,7 @@ export function createReportVersionStore({ pool }) {
115
117
  return errAsync({ type: "malformed_snapshot", op: "report-versions.record", issues: parsedSnapshot.error });
116
118
  }
117
119
  const write = () => {
118
- const minted = randomUUID();
120
+ const minted = input.versionId ?? randomUUID();
119
121
  return tryMutation("report-versions.record.write", async () => {
120
122
  const { rows } = await pool.query({
121
123
  text: RECORD_SQL,
@@ -10,27 +10,40 @@
10
10
  * `err(constraint_violation)` via `tryMutation`.
11
11
  */
12
12
  import type { ResultAsync } from "neverthrow";
13
+ import type { QueryConfig } from "pg";
13
14
  import type { DbError } from "../lib/db-result.js";
14
15
  import type { Querier } from "./db.js";
15
- import type { CortexRunRow, SynthesisStatus } from "./schema.js";
16
- export interface InsertRunInput {
16
+ import { type CortexRunRow, type SynthesisStatus } from "./schema.js";
17
+ /**
18
+ * The row-reading surface of this module: one query over the text or config form, whose rows the mapRunRow
19
+ * parser types. A computed test fake satisfies this shape directly, where the row-generic of `Querier`
20
+ * cannot be implemented by a fake that computes its rows.
21
+ */
22
+ export type RunRowQuerier = {
23
+ query(queryTextOrConfig: string | QueryConfig, values?: unknown[]): Promise<{
24
+ rows: Record<string, unknown>[];
25
+ rowCount: number | null;
26
+ }>;
27
+ };
28
+ export type InsertRunInput = {
17
29
  runId: string;
18
30
  analysisId: string;
19
31
  threadId?: string | null;
20
32
  workflowName: string;
21
33
  planId?: string | null;
22
- mandateJti?: string | null;
23
- mandateExpiresAt?: string | null;
24
- }
25
- export interface RunReservation {
34
+ mandateId?: string | null;
35
+ /** The start time as an ISO string. Without it, the row gets the clock of the host. */
36
+ startedAt?: string;
37
+ };
38
+ export type RunReservation = {
26
39
  readonly row: CortexRunRow;
27
40
  readonly inserted: boolean;
28
- }
41
+ };
29
42
  /** Bounded run rows paired with the true count before limit/offset. */
30
- export interface RunPage {
43
+ export type RunPage = {
31
44
  readonly runs: CortexRunRow[];
32
45
  readonly total: number;
33
- }
46
+ };
34
47
  export declare class RunIdentityCollisionError extends Error {
35
48
  readonly runId: string;
36
49
  constructor(runId: string);
@@ -64,6 +77,11 @@ export declare function reserveRunById(pool: Querier, input: InsertRunInput): Re
64
77
  * most one match.
65
78
  */
66
79
  export declare function queryActiveRun(pool: Querier, analysisId: string, planId: string | null): ResultAsync<CortexRunRow | null, DbError>;
80
+ /** The optional text filter of the run reads. */
81
+ export type RunTextFilter = {
82
+ /** A part of the run id or of the plan title, with no regard to case. Each character matches only itself. */
83
+ q?: string;
84
+ };
67
85
  /**
68
86
  * Every NON-TERMINAL run of an analysis, newest-first and deliberately unbounded.
69
87
  *
@@ -80,8 +98,10 @@ export declare function queryActiveRun(pool: Querier, analysisId: string, planId
80
98
  * The status set is the one {@link queryActiveRun} uses — non-terminal means `running`. Keep the two
81
99
  * in step: a new non-terminal status added to one and not the other makes a live run invisible to
82
100
  * exactly one of its readers.
101
+ *
102
+ * With `q`, only the runs that the text filter selects are members.
83
103
  */
84
- export declare function queryActiveRunsByAnalysis(pool: Querier, analysisId: string): ResultAsync<CortexRunRow[], DbError>;
104
+ export declare function queryActiveRunsByAnalysis(pool: Querier, analysisId: string, { q }?: RunTextFilter): ResultAsync<CortexRunRow[], DbError>;
85
105
  /**
86
106
  * How long a reserved run may wait for its workflow before {@link reconcileOrphanedRuns} fails it. A launch writes
87
107
  * the workflow row seconds after the reservation, and the margin covers a slow authorization gate of a managed host.
@@ -104,23 +124,36 @@ export declare function reconcileOrphanedRuns(pool: Querier, opts?: {
104
124
  now?: number;
105
125
  graceMs?: number;
106
126
  }): ResultAsync<string[], DbError>;
107
- export declare function updateRunStatus(pool: Querier, runId: string, status: "running" | "completed" | "partial" | "failed" | "canceled" | "suspended_insufficient_funds", error?: string | null): ResultAsync<void, DbError>;
127
+ /**
128
+ * Write a status to a run row that is still `running`, and report whether the row changed. The first terminal write
129
+ * of a run wins: a row that already holds a terminal status keeps its status, its `completed_at`, and its error.
130
+ * The error text loses each NUL character, because Postgres rejects a NUL in text and the write must not fail for its own value.
131
+ */
132
+ export declare function updateRunStatus(pool: Querier, runId: string, status: "running" | "completed" | "partial" | "failed" | "canceled", error?: string | null): ResultAsync<boolean, DbError>;
108
133
  /**
109
134
  * Conditionally transition an ACTIVE run to `canceled`, stamping `completed_at`
110
135
  * and recording `reason` in `error` (the same column `collectAndComplete`
111
136
  * stamps `external_cancel` into). Reports whether a row transitioned — false
112
137
  * means the run was already terminal (e.g. it completed concurrently with an
113
- * external cancel), and the caller MUST NOT fall back to `updateRunStatus`,
114
- * which would clobber that terminal status. The guarded set is the active set
115
- * `queryActiveRun` deduplicates on.
138
+ * external cancel). The guarded set is the active set `queryActiveRun`
139
+ * deduplicates on.
116
140
  */
117
141
  export declare function markRunCanceledIfActive(pool: Querier, runId: string, reason: string): ResultAsync<boolean, DbError>;
118
142
  export declare function promoteFailedToPartial(pool: Querier, runId: string): ResultAsync<boolean, DbError>;
119
- export declare function queryRun(pool: Querier, runId: string): ResultAsync<CortexRunRow | null, DbError>;
120
- export declare function queryRunsByAnalysis(pool: Querier, analysisId: string, { limit, offset }?: {
143
+ export declare function queryRun(pool: RunRowQuerier, runId: string): ResultAsync<CortexRunRow | null, DbError>;
144
+ /**
145
+ * One window of the runs of an analysis, newest start first. With `q`, the window holds only the runs that the text
146
+ * filter selects: the filter applies before `limit` and `offset`, and it does not change the order.
147
+ */
148
+ export declare function queryRunsByAnalysis(pool: Querier, analysisId: string, { limit, offset, q }?: {
121
149
  limit?: number;
122
150
  offset?: number;
123
- }): ResultAsync<CortexRunRow[], DbError>;
151
+ } & RunTextFilter): ResultAsync<CortexRunRow[], DbError>;
152
+ /**
153
+ * The count of the runs of an analysis, in one statement. With `q`, the count holds only the runs that the text filter
154
+ * selects, thus it agrees with the windows of {@link queryRunsByAnalysis} for the same `q`.
155
+ */
156
+ export declare function countRunsByAnalysis(pool: Querier, analysisId: string, { q }?: RunTextFilter): ResultAsync<number, DbError>;
124
157
  /**
125
158
  * The run ids of one plan of one analysis, newest start first, at most `limit`.
126
159
  * The run id breaks a tie of start times, highest first. A plan with no run gives
@@ -131,6 +164,17 @@ export declare function queryRunIdsByPlan(pool: Querier, opts: {
131
164
  planId: string;
132
165
  limit: number;
133
166
  }): ResultAsync<string[], DbError>;
167
+ /**
168
+ * The newest run of one plan of one analysis, or `null` for a plan with no run. The order is the one of
169
+ * {@link queryRunIdsByPlan}: the latest start first, and the highest run id on a tie of start times.
170
+ */
171
+ export declare function queryNewestPlanRun(pool: Querier, opts: {
172
+ analysisId: string;
173
+ planId: string;
174
+ }): ResultAsync<{
175
+ runId: string;
176
+ startedAt: string;
177
+ } | null, DbError>;
134
178
  /**
135
179
  * Read the analysis's non-terminal run activity without coupling it to a
136
180
  * conversation thread. The total is counted before the detail limit so a
@@ -142,21 +186,22 @@ export declare function queryNonTerminalRunsByAnalysis(pool: Querier, analysisId
142
186
  * {@link queryRunsByAnalysis}, whose chronological order is an embedder/UI
143
187
  * contract.
144
188
  */
145
- export declare function queryRunsForInspection(pool: Querier, analysisId: string, { limit, offset }?: {
189
+ export declare function queryRunsForInspection(pool: RunRowQuerier, analysisId: string, { limit, offset }?: {
146
190
  limit?: number;
147
191
  offset?: number;
148
192
  }): ResultAsync<RunPage, DbError>;
149
- export declare function queryRunsByThread(pool: Querier, analysisId: string, threadId: string, { limit, offset }?: {
193
+ /** The runs of one thread of an analysis, newest start first. With `q`, the text filter applies before the window. */
194
+ export declare function queryRunsByThread(pool: Querier, analysisId: string, threadId: string, { limit, offset, q }?: {
150
195
  limit?: number;
151
196
  offset?: number;
152
- }): ResultAsync<CortexRunRow[], DbError>;
197
+ } & RunTextFilter): ResultAsync<CortexRunRow[], DbError>;
153
198
  /**
154
- * Persist the run mandate jti + expiry for a run. oss-core-managed-ok: run-mandate ledger (nullable; OSS leaves null)
155
- * Called by `authorizeForRun` after a successful mint so the cancel
156
- * handler can revoke the mandate by `runId → jti` lookup. oss-core-managed-ok: run-mandate ledger (nullable; OSS leaves null)
157
- * The JWT itself is NOT persisted — it rides in DBOS workflow input.
199
+ * Persist the run mandate reference for a run. oss-core-managed-ok: run-mandate ledger (nullable; OSS leaves null)
200
+ * Called by the host authorizer after it authorizes the run, so the cancel
201
+ * handler can revoke the mandate by `runId → mandate id` lookup. oss-core-managed-ok: run-mandate ledger (nullable; OSS leaves null)
202
+ * The reference has no expiry here: the run does not depend on a clock.
158
203
  */
159
- export declare function setRunMandate(pool: Querier, runId: string, jti: string, expiresAt: string): ResultAsync<void, DbError>;
204
+ export declare function setRunMandate(pool: Querier, runId: string, mandateId: string): ResultAsync<void, DbError>;
160
205
  /**
161
206
  * Record the run-level synthesis outcome on the run ledger. `synthesisReason`
162
207
  * carries operator-facing detail for a skipped/failed outcome; it stays null