@inflexa-ai/harness 0.45.0 → 0.46.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (802) hide show
  1. package/README.md +6 -3
  2. package/dist/agents/conversation-agent.d.ts +19 -3
  3. package/dist/agents/conversation-agent.js +49 -30
  4. package/dist/agents/report-session-agent.d.ts +15 -15
  5. package/dist/agents/report-session-agent.js +23 -15
  6. package/dist/agents/sandbox/index.d.ts +1 -1
  7. package/dist/agents/sandbox/index.js +1 -1
  8. package/dist/agents/sandbox/shared.d.ts +35 -16
  9. package/dist/agents/sandbox/shared.js +63 -24
  10. package/dist/agents/sandbox/translational-safety-agent.js +26 -0
  11. package/dist/agents/sandbox/types.d.ts +26 -3
  12. package/dist/agents/sandbox/validate-skills.d.ts +2 -2
  13. package/dist/agents/sandbox/validate-skills.js +3 -1
  14. package/dist/agents/sandbox-catalog.d.ts +16 -2
  15. package/dist/agents/sandbox-catalog.js +22 -3
  16. package/dist/agents/system-prompt.d.ts +2 -2
  17. package/dist/app/approve-plan.d.ts +5 -2
  18. package/dist/app/approve-plan.js +1 -1
  19. package/dist/app/chat-turn-workflow.d.ts +114 -0
  20. package/dist/app/chat-turn-workflow.js +307 -0
  21. package/dist/app/chat-turn.d.ts +85 -57
  22. package/dist/app/chat-turn.js +125 -99
  23. package/dist/app/data-profile-orientation.js +10 -8
  24. package/dist/app/data-profile-view.d.ts +4 -4
  25. package/dist/app/data-profile-view.js +9 -8
  26. package/dist/app/in-process-turn.d.ts +42 -0
  27. package/dist/app/in-process-turn.js +139 -0
  28. package/dist/app/message-assembly.d.ts +10 -4
  29. package/dist/app/message-assembly.js +13 -8
  30. package/dist/app/report-session-runtime.d.ts +4 -4
  31. package/dist/app/report-session-runtime.js +36 -21
  32. package/dist/app/spawn-report-session.d.ts +33 -28
  33. package/dist/app/spawn-report-session.js +25 -40
  34. package/dist/app/synthesize-run.d.ts +22 -16
  35. package/dist/app/synthesize-run.js +41 -35
  36. package/dist/app/work.d.ts +96 -0
  37. package/dist/app/work.js +147 -0
  38. package/dist/auth/local-auth-context.d.ts +1 -3
  39. package/dist/auth/local-auth-context.js +1 -3
  40. package/dist/auth/local-run-authorizer.d.ts +1 -1
  41. package/dist/auth/local-run-authorizer.js +5 -3
  42. package/dist/auth/types.d.ts +26 -26
  43. package/dist/billing/cached-resolver.d.ts +4 -4
  44. package/dist/billing/run-charge.d.ts +5 -8
  45. package/dist/billing/run-charge.js +2 -2
  46. package/dist/billing/usage-recorder.d.ts +9 -9
  47. package/dist/citations/aggregate.js +1 -1
  48. package/dist/citations/clients/arxiv.d.ts +2 -2
  49. package/dist/citations/clients/arxiv.js +12 -4
  50. package/dist/citations/clients/common.js +4 -2
  51. package/dist/citations/clients/crossref.d.ts +2 -2
  52. package/dist/citations/clients/crossref.js +37 -37
  53. package/dist/citations/clients/doi-registry.js +15 -16
  54. package/dist/citations/clients/pubmed.d.ts +2 -2
  55. package/dist/citations/clients/pubmed.js +20 -13
  56. package/dist/citations/clients/semantic-scholar.d.ts +2 -2
  57. package/dist/citations/clients/semantic-scholar.js +9 -9
  58. package/dist/citations/compare.js +2 -2
  59. package/dist/citations/match.d.ts +2 -2
  60. package/dist/citations/match.js +12 -7
  61. package/dist/citations/normalize.js +35 -26
  62. package/dist/citations/plan.js +6 -2
  63. package/dist/citations/resolve.d.ts +6 -6
  64. package/dist/citations/resolve.js +34 -25
  65. package/dist/citations/types.d.ts +77 -77
  66. package/dist/config/environment-stores.d.ts +10 -8
  67. package/dist/config/resource-limits.js +1 -3
  68. package/dist/contracts/analogy-report.d.ts +7 -7
  69. package/dist/contracts/analogy-report.js +2 -2
  70. package/dist/contracts/chat-events.d.ts +46 -22
  71. package/dist/contracts/chat-events.js +1 -1
  72. package/dist/contracts/chat-frame.d.ts +15 -5
  73. package/dist/contracts/chat-frame.js +67 -40
  74. package/dist/contracts/chat-parts.d.ts +130 -67
  75. package/dist/contracts/chat-parts.js +1 -0
  76. package/dist/contracts/content-url.js +16 -2
  77. package/dist/contracts/data-profile.d.ts +38 -38
  78. package/dist/contracts/index.d.ts +3 -3
  79. package/dist/contracts/index.js +1 -1
  80. package/dist/contracts/message.d.ts +6 -6
  81. package/dist/contracts/organ-system.d.ts +11 -11
  82. package/dist/contracts/part-registry.d.ts +5 -4
  83. package/dist/contracts/part-registry.js +5 -0
  84. package/dist/contracts/profile-vocabulary.d.ts +11 -10
  85. package/dist/contracts/profile-vocabulary.js +10 -3
  86. package/dist/contracts/report-blocks.d.ts +329 -329
  87. package/dist/contracts/report-reference.d.ts +105 -81
  88. package/dist/contracts/report-reference.js +30 -13
  89. package/dist/contracts/schemas/chat-events.d.ts +45 -6
  90. package/dist/contracts/schemas/chat-events.js +16 -0
  91. package/dist/contracts/schemas/chat-parts.d.ts +214 -102
  92. package/dist/contracts/schemas/chat-parts.js +50 -7
  93. package/dist/contracts/schemas/index.d.ts +1 -1
  94. package/dist/contracts/schemas/index.js +1 -1
  95. package/dist/contracts/severity.d.ts +1 -1
  96. package/dist/contracts/structure-source.d.ts +3 -3
  97. package/dist/contracts/structure-source.js +6 -2
  98. package/dist/contracts/subagent-activity.d.ts +2 -2
  99. package/dist/contracts/subagent-activity.js +5 -3
  100. package/dist/contracts/usage.d.ts +2 -2
  101. package/dist/data/safety-panel-schema.d.ts +25 -25
  102. package/dist/data/safety-panel-schema.js +13 -4
  103. package/dist/execution/artifact-metadata.d.ts +23 -15
  104. package/dist/execution/artifact-metadata.js +33 -10
  105. package/dist/execution/artifact-record.d.ts +2 -2
  106. package/dist/execution/artifact-registration.d.ts +5 -5
  107. package/dist/execution/artifact-registry.d.ts +8 -8
  108. package/dist/execution/dbos-run-launcher.d.ts +24 -4
  109. package/dist/execution/dbos-run-launcher.js +58 -4
  110. package/dist/execution/dbos-workflow-purger.d.ts +7 -6
  111. package/dist/execution/dbos-workflow-purger.js +29 -21
  112. package/dist/execution/input-signature.d.ts +2 -2
  113. package/dist/execution/post-step-pipeline.d.ts +9 -9
  114. package/dist/execution/post-step-pipeline.js +1 -1
  115. package/dist/execution/post-step.js +2 -2
  116. package/dist/execution/reconcile-manifest.d.ts +4 -4
  117. package/dist/execution/reconcile-manifest.js +3 -2
  118. package/dist/execution/run-authorizer.d.ts +46 -37
  119. package/dist/execution/run-authorizer.js +8 -8
  120. package/dist/execution/run-canceler.d.ts +39 -17
  121. package/dist/execution/run-canceler.js +137 -28
  122. package/dist/execution/run-end-record.d.ts +29 -0
  123. package/dist/execution/run-end-record.js +27 -0
  124. package/dist/execution/run-event-parts.d.ts +0 -8
  125. package/dist/execution/run-event-parts.js +29 -24
  126. package/dist/execution/run-event-stream.d.ts +8 -8
  127. package/dist/execution/run-event-stream.js +3 -4
  128. package/dist/execution/run-launcher.d.ts +4 -4
  129. package/dist/execution/run-synthesis.d.ts +49 -48
  130. package/dist/execution/run-synthesis.js +96 -255
  131. package/dist/execution/staged-input.d.ts +2 -2
  132. package/dist/execution/step-summary.d.ts +6 -6
  133. package/dist/execution/step-summary.js +4 -8
  134. package/dist/execution/topo-sort.js +4 -3
  135. package/dist/execution/workflow-purger.d.ts +2 -2
  136. package/dist/index.d.ts +25 -24
  137. package/dist/index.js +36 -37
  138. package/dist/input-sanitization.js +9 -2
  139. package/dist/input-scan/clustering.d.ts +6 -6
  140. package/dist/input-scan/clustering.js +11 -5
  141. package/dist/input-scan/companions.js +3 -2
  142. package/dist/input-scan/detect-sets.d.ts +2 -2
  143. package/dist/input-scan/detect-sets.js +25 -21
  144. package/dist/input-scan/enrich.d.ts +6 -6
  145. package/dist/input-scan/enrich.js +29 -12
  146. package/dist/input-scan/formats.d.ts +2 -2
  147. package/dist/input-scan/formats.js +8 -2
  148. package/dist/input-scan/markers.d.ts +2 -2
  149. package/dist/input-scan/markers.js +14 -5
  150. package/dist/input-scan/menu.d.ts +10 -10
  151. package/dist/input-scan/menu.js +0 -0
  152. package/dist/input-scan/quarantine.d.ts +2 -2
  153. package/dist/input-scan/quarantine.js +23 -18
  154. package/dist/input-scan/readout-budget.d.ts +2 -2
  155. package/dist/input-scan/readout-budget.js +1 -1
  156. package/dist/input-scan/readout.d.ts +2 -2
  157. package/dist/input-scan/readout.js +47 -34
  158. package/dist/input-scan/scan.d.ts +2 -2
  159. package/dist/input-scan/scan.js +7 -5
  160. package/dist/input-scan/set-types.d.ts +28 -28
  161. package/dist/input-scan/shapes.d.ts +4 -4
  162. package/dist/input-scan/shapes.js +0 -0
  163. package/dist/input-scan/templates.d.ts +10 -10
  164. package/dist/input-scan/templates.js +30 -22
  165. package/dist/input-scan/tokens.d.ts +6 -4
  166. package/dist/input-scan/tokens.js +100 -38
  167. package/dist/input-scan/types.d.ts +22 -22
  168. package/dist/lib/async-utils.d.ts +3 -7
  169. package/dist/lib/async-utils.js +5 -9
  170. package/dist/lib/cache.js +1 -1
  171. package/dist/lib/chrome.d.ts +46 -6
  172. package/dist/lib/console-logger.js +2 -2
  173. package/dist/lib/db-result.d.ts +22 -6
  174. package/dist/lib/db-result.js +9 -13
  175. package/dist/lib/eyes.d.ts +4 -4
  176. package/dist/lib/eyes.js +1 -1
  177. package/dist/lib/fs-helpers.js +18 -6
  178. package/dist/lib/fs-result.d.ts +1 -0
  179. package/dist/lib/fs-result.js +5 -6
  180. package/dist/lib/hooks.d.ts +23 -7
  181. package/dist/lib/hooks.js +17 -3
  182. package/dist/lib/host-concurrency.js +3 -2
  183. package/dist/lib/logger.d.ts +2 -2
  184. package/dist/lib/logger.js +2 -1
  185. package/dist/lib/metrics.d.ts +1 -1
  186. package/dist/lib/null-proto.d.ts +6 -0
  187. package/dist/lib/null-proto.js +17 -0
  188. package/dist/lib/otel-spans.d.ts +1 -1
  189. package/dist/lib/otel-spans.js +9 -5
  190. package/dist/lib/otel.d.ts +4 -2
  191. package/dist/lib/otel.js +10 -2
  192. package/dist/lib/page-capture.d.ts +8 -8
  193. package/dist/lib/page-capture.js +9 -4
  194. package/dist/lib/parse-json.d.ts +5 -0
  195. package/dist/lib/parse-json.js +12 -0
  196. package/dist/lib/present.d.ts +12 -0
  197. package/dist/lib/present.js +39 -0
  198. package/dist/lib/rate-limit.d.ts +4 -4
  199. package/dist/lib/rate-limit.js +12 -13
  200. package/dist/lib/regulatory-corpus/fetch-fda-guidance.d.ts +4 -4
  201. package/dist/lib/regulatory-corpus/fetch-fda-guidance.js +4 -10
  202. package/dist/lib/regulatory-corpus/fetch-ich.d.ts +4 -4
  203. package/dist/lib/regulatory-corpus/fetch-ich.js +18 -14
  204. package/dist/lib/regulatory-corpus/normalize-whitespace.d.ts +6 -0
  205. package/dist/lib/regulatory-corpus/normalize-whitespace.js +41 -0
  206. package/dist/lib/regulatory-corpus.d.ts +10 -10
  207. package/dist/lib/regulatory-corpus.js +3 -1
  208. package/dist/lib/result.d.ts +10 -11
  209. package/dist/lib/result.js +15 -13
  210. package/dist/lib/storage.d.ts +2 -2
  211. package/dist/lib/test/async-iterable.d.ts +9 -0
  212. package/dist/lib/test/async-iterable.js +28 -0
  213. package/dist/lib/test/request-url.d.ts +5 -0
  214. package/dist/lib/test/request-url.js +7 -0
  215. package/dist/lib/test/result-assert.d.ts +12 -0
  216. package/dist/lib/test/result-assert.js +17 -0
  217. package/dist/lib/test/text-shapes.d.ts +24 -0
  218. package/dist/lib/test/text-shapes.js +63 -0
  219. package/dist/lib/text.d.ts +22 -0
  220. package/dist/lib/text.js +68 -0
  221. package/dist/lib/thrown.d.ts +18 -0
  222. package/dist/lib/thrown.js +30 -0
  223. package/dist/lib/unknown-array.d.ts +6 -0
  224. package/dist/lib/unknown-array.js +8 -0
  225. package/dist/lib/unknown-containers.d.ts +14 -0
  226. package/dist/lib/unknown-containers.js +17 -0
  227. package/dist/lib/unknown-text.d.ts +8 -0
  228. package/dist/lib/unknown-text.js +28 -0
  229. package/dist/lib/zod-issue-shape.d.ts +1 -1
  230. package/dist/lib/zod-issue-shape.js +31 -31
  231. package/dist/lib/zod-issues.d.ts +3 -3
  232. package/dist/lib/zod-issues.js +30 -17
  233. package/dist/literature/sources/arxiv.d.ts +6 -6
  234. package/dist/literature/sources/arxiv.js +92 -35
  235. package/dist/literature/sources/http.d.ts +2 -2
  236. package/dist/literature/sources/http.js +16 -15
  237. package/dist/literature/sources/pubmed.d.ts +16 -16
  238. package/dist/literature/sources/pubmed.js +96 -61
  239. package/dist/literature/sources/semantic-scholar.d.ts +8 -8
  240. package/dist/literature/sources/semantic-scholar.js +22 -13
  241. package/dist/loop/accounting.d.ts +63 -0
  242. package/dist/loop/accounting.js +141 -0
  243. package/dist/loop/call-policy.d.ts +73 -0
  244. package/dist/loop/call-policy.js +109 -0
  245. package/dist/loop/chat-stream.d.ts +62 -0
  246. package/dist/loop/chat-stream.js +237 -0
  247. package/dist/loop/compaction.d.ts +14 -9
  248. package/dist/loop/compaction.js +17 -0
  249. package/dist/loop/metrics.d.ts +12 -15
  250. package/dist/loop/metrics.js +14 -26
  251. package/dist/loop/run-loop.d.ts +233 -0
  252. package/dist/loop/run-loop.js +770 -0
  253. package/dist/loop/sub-agent.d.ts +61 -0
  254. package/dist/loop/sub-agent.js +161 -0
  255. package/dist/loop/tool-adapter.d.ts +98 -0
  256. package/dist/loop/tool-adapter.js +364 -0
  257. package/dist/loop/tool-detail.d.ts +1 -1
  258. package/dist/loop/tool-detail.js +6 -5
  259. package/dist/loop/tool-outcome.d.ts +1 -1
  260. package/dist/loop/tool-output.d.ts +4 -4
  261. package/dist/loop/tool-output.js +2 -2
  262. package/dist/loop/turn-credentials.d.ts +34 -0
  263. package/dist/loop/turn-credentials.js +73 -0
  264. package/dist/loop/types.d.ts +34 -37
  265. package/dist/loop/types.js +2 -7
  266. package/dist/memory/ai-sdk-message-storage.d.ts +5 -5
  267. package/dist/memory/ai-sdk-message-storage.js +13 -11
  268. package/dist/memory/card-builders.d.ts +14 -14
  269. package/dist/memory/card-builders.js +19 -15
  270. package/dist/memory/conversation-display-recorder.d.ts +22 -6
  271. package/dist/memory/conversation-display-recorder.js +64 -20
  272. package/dist/memory/conversation-display-replay.js +3 -2
  273. package/dist/memory/conversation-display-storage.d.ts +15 -7
  274. package/dist/memory/conversation-display-storage.js +141 -36
  275. package/dist/memory/conversation-view.d.ts +4 -4
  276. package/dist/memory/conversation-view.js +5 -4
  277. package/dist/memory/count-tokens.js +10 -8
  278. package/dist/memory/derive-thread-title.d.ts +0 -13
  279. package/dist/memory/derive-thread-title.js +2 -1
  280. package/dist/memory/message-backfill.d.ts +12 -5
  281. package/dist/memory/message-backfill.js +5 -3
  282. package/dist/memory/thread-history.d.ts +66 -24
  283. package/dist/memory/thread-history.js +212 -79
  284. package/dist/memory/thread-store.d.ts +26 -17
  285. package/dist/memory/thread-store.js +15 -9
  286. package/dist/memory/tool-call-integrity.d.ts +2 -2
  287. package/dist/memory/tool-call-integrity.js +4 -3
  288. package/dist/memory/working-memory.d.ts +16 -12
  289. package/dist/memory/working-memory.js +72 -61
  290. package/dist/prompts/briefing.d.ts +63 -9
  291. package/dist/prompts/briefing.js +130 -3
  292. package/dist/prompts/planner.js +13 -2
  293. package/dist/prompts/synthesis-agent.d.ts +1 -1
  294. package/dist/prompts/synthesis-agent.js +6 -14
  295. package/dist/provenance/collector.d.ts +6 -6
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  297. package/dist/provenance/exec-frame.d.ts +2 -2
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  301. package/dist/provenance/types.d.ts +6 -6
  302. package/dist/providers/ai-sdk.d.ts +113 -62
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  316. package/dist/report-model/assert-rules.js +1 -1
  317. package/dist/report-model/authoring-grammar.d.ts +209 -231
  318. package/dist/report-model/block-walk.d.ts +10 -10
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  337. package/dist/report-model/structural-validation.js +12 -4
  338. package/dist/report-model/validate.d.ts +7 -7
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  340. package/dist/report-render/assets.d.ts +2 -2
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  706. package/dist/tools/research/guarded-address.js +149 -0
  707. package/dist/tools/research/inspect-data-profile.d.ts +27 -20
  708. package/dist/tools/research/inspect-data-profile.js +26 -25
  709. package/dist/tools/research/inspect-run.d.ts +54 -27
  710. package/dist/tools/research/inspect-run.js +50 -40
  711. package/dist/tools/research/literature-reviewer.d.ts +8 -7
  712. package/dist/tools/research/literature-reviewer.js +29 -28
  713. package/dist/tools/research/search-arxiv.d.ts +1 -1
  714. package/dist/tools/research/search-arxiv.js +1 -1
  715. package/dist/tools/research/search-github-repos.d.ts +10 -7
  716. package/dist/tools/research/search-github-repos.js +25 -22
  717. package/dist/tools/research/search-semantic-scholar.js +1 -1
  718. package/dist/tools/research/searxng-engine.d.ts +40 -0
  719. package/dist/tools/research/searxng-engine.js +122 -0
  720. package/dist/tools/research/web-fetch.d.ts +127 -0
  721. package/dist/tools/research/web-fetch.js +618 -0
  722. package/dist/tools/research/web-search.d.ts +84 -0
  723. package/dist/tools/research/web-search.js +117 -0
  724. package/dist/tools/sandbox/link-packages.d.ts +11 -7
  725. package/dist/tools/sandbox/link-packages.js +11 -8
  726. package/dist/tools/sandbox/list-available-packages.d.ts +24 -12
  727. package/dist/tools/sandbox/list-available-packages.js +43 -29
  728. package/dist/tools/sandbox/list-available-refs.d.ts +38 -14
  729. package/dist/tools/sandbox/list-available-refs.js +119 -37
  730. package/dist/tools/sandbox/report-blocker.d.ts +30 -37
  731. package/dist/tools/sandbox/report-blocker.js +22 -68
  732. package/dist/tools/sandbox/skills.d.ts +16 -12
  733. package/dist/tools/sandbox/skills.js +16 -12
  734. package/dist/tools/sandbox/submit-file-metadata.d.ts +12 -9
  735. package/dist/tools/sandbox/submit-file-metadata.js +18 -21
  736. package/dist/tools/start-report-session.d.ts +13 -5
  737. package/dist/tools/start-report-session.js +35 -8
  738. package/dist/tools/terminal-text.d.ts +14 -0
  739. package/dist/tools/terminal-text.js +51 -0
  740. package/dist/tools/workspace/decision-record.d.ts +81 -0
  741. package/dist/tools/workspace/decision-record.js +127 -0
  742. package/dist/tools/workspace/edit-file.d.ts +59 -18
  743. package/dist/tools/workspace/edit-file.js +98 -15
  744. package/dist/tools/workspace/execute-command.d.ts +31 -12
  745. package/dist/tools/workspace/execute-command.js +37 -8
  746. package/dist/tools/workspace/file-stat.d.ts +6 -3
  747. package/dist/tools/workspace/grep.d.ts +10 -7
  748. package/dist/tools/workspace/grep.js +9 -3
  749. package/dist/tools/workspace/index.d.ts +1 -0
  750. package/dist/tools/workspace/index.js +1 -0
  751. package/dist/tools/workspace/list-files.d.ts +6 -3
  752. package/dist/tools/workspace/mutator.d.ts +28 -15
  753. package/dist/tools/workspace/mutator.js +107 -53
  754. package/dist/tools/workspace/read-file.d.ts +8 -5
  755. package/dist/tools/workspace/result-bounds.d.ts +5 -5
  756. package/dist/tools/workspace/result-bounds.js +4 -2
  757. package/dist/tools/workspace/run-exec.d.ts +2 -2
  758. package/dist/tools/workspace/run-exec.js +3 -3
  759. package/dist/tools/workspace/scan-inputs.d.ts +8 -5
  760. package/dist/tools/workspace/scan-inputs.js +17 -5
  761. package/dist/tools/workspace/show-file.d.ts +1 -1
  762. package/dist/tools/workspace/show-file.js +2 -1
  763. package/dist/tools/workspace/show-plan.d.ts +8 -5
  764. package/dist/tools/workspace/show-plan.js +9 -8
  765. package/dist/tools/workspace/workspace-search.d.ts +41 -13
  766. package/dist/tools/workspace/workspace-search.js +27 -14
  767. package/dist/tools/workspace/write-file.d.ts +9 -7
  768. package/dist/workflows/execute-analysis-scheduler.d.ts +9 -9
  769. package/dist/workflows/execute-analysis-scheduler.js +6 -3
  770. package/dist/workflows/execute-analysis.d.ts +100 -76
  771. package/dist/workflows/execute-analysis.js +380 -247
  772. package/dist/workflows/pause.d.ts +71 -0
  773. package/dist/workflows/pause.js +173 -0
  774. package/dist/workflows/sandbox-step.d.ts +50 -61
  775. package/dist/workflows/sandbox-step.js +99 -106
  776. package/dist/workflows/test/sql-writes.d.ts +21 -0
  777. package/dist/workflows/test/sql-writes.js +36 -0
  778. package/dist/workspace/filesystem.d.ts +6 -6
  779. package/dist/workspace/filesystem.js +10 -8
  780. package/dist/workspace/paths.d.ts +1 -1
  781. package/dist/workspace/paths.js +15 -4
  782. package/dist/workspace/search-config.d.ts +2 -2
  783. package/dist/workspace/search-config.js +1 -1
  784. package/package.json +25 -22
  785. package/dist/loop/continue-agent.d.ts +0 -40
  786. package/dist/loop/continue-agent.js +0 -38
  787. package/dist/loop/genai-spans.d.ts +0 -47
  788. package/dist/loop/genai-spans.js +0 -134
  789. package/dist/loop/run-agent.d.ts +0 -236
  790. package/dist/loop/run-agent.js +0 -1110
  791. package/dist/loop/run-step.d.ts +0 -29
  792. package/dist/loop/run-step.js +0 -34
  793. package/dist/loop/run-to-terminal.d.ts +0 -66
  794. package/dist/loop/run-to-terminal.js +0 -90
  795. package/dist/loop/tool-mask.d.ts +0 -23
  796. package/dist/loop/tool-mask.js +0 -46
  797. package/dist/providers/streaming-chat.d.ts +0 -32
  798. package/dist/providers/streaming-chat.js +0 -91
  799. package/dist/tasks/derive-table-exec.d.ts +0 -54
  800. package/dist/tasks/derive-table-exec.js +0 -86
  801. package/dist/workflows/suspension.d.ts +0 -32
  802. package/dist/workflows/suspension.js +0 -38
@@ -15,6 +15,19 @@ export declare const PlanStepSchema: z.ZodObject<{
15
15
  count: z.ZodNumber;
16
16
  }, z.core.$strip>>;
17
17
  }, z.core.$strip>>;
18
+ grounding: z.ZodOptional<z.ZodObject<{
19
+ status: z.ZodString;
20
+ snapshot: z.ZodString;
21
+ claims: z.ZodArray<z.ZodString>;
22
+ template: z.ZodOptional<z.ZodString>;
23
+ settings: z.ZodOptional<z.ZodArray<z.ZodObject<{
24
+ step: z.ZodString;
25
+ name: z.ZodString;
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+ value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber, z.ZodBoolean, z.ZodArray<z.ZodString>]>;
27
+ source: z.ZodOptional<z.ZodString>;
28
+ }, z.core.$strip>>>;
29
+ reason: z.ZodString;
30
+ }, z.core.$strip>>;
18
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  maxSteps: z.ZodNumber;
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  track: z.ZodOptional<z.ZodString>;
20
33
  step_type: z.ZodOptional<z.ZodString>;
@@ -24,7 +37,7 @@ export declare const PlanStepSchema: z.ZodObject<{
24
37
  }, z.core.$strip>;
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  export declare const PresentationContentSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
26
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  kind: z.ZodLiteral<"echart">;
27
- spec: z.ZodRecord<z.ZodString, z.ZodUnknown>;
40
+ spec: z.ZodRecord<z.ZodString, z.ZodJSONSchema>;
28
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  dataPath: z.ZodOptional<z.ZodString>;
29
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  }, z.core.$strip>, z.ZodObject<{
30
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  kind: z.ZodLiteral<"markdown">;
@@ -44,8 +57,8 @@ export declare const PresentationContentSchema: z.ZodDiscriminatedUnion<[z.ZodOb
44
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  }, z.core.$strip>, z.ZodObject<{
45
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  kind: z.ZodLiteral<"structure">;
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  format: z.ZodEnum<{
47
- pdb: "pdb";
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  mmcif: "mmcif";
61
+ pdb: "pdb";
49
62
  }>;
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  url: z.ZodURL;
51
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  provider: z.ZodLiteral<"alphafold">;
@@ -58,7 +71,7 @@ export declare const PresentationPartSchema: z.ZodObject<{
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  title: z.ZodOptional<z.ZodString>;
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  content: z.ZodDiscriminatedUnion<[z.ZodObject<{
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  kind: z.ZodLiteral<"echart">;
61
- spec: z.ZodRecord<z.ZodString, z.ZodUnknown>;
74
+ spec: z.ZodRecord<z.ZodString, z.ZodJSONSchema>;
62
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  dataPath: z.ZodOptional<z.ZodString>;
63
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  }, z.core.$strip>, z.ZodObject<{
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  kind: z.ZodLiteral<"markdown">;
@@ -78,8 +91,8 @@ export declare const PresentationPartSchema: z.ZodObject<{
78
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  }, z.core.$strip>, z.ZodObject<{
79
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  kind: z.ZodLiteral<"structure">;
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  format: z.ZodEnum<{
81
- pdb: "pdb";
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  mmcif: "mmcif";
95
+ pdb: "pdb";
83
96
  }>;
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  url: z.ZodURL;
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  provider: z.ZodLiteral<"alphafold">;
@@ -87,6 +100,7 @@ export declare const PresentationPartSchema: z.ZodObject<{
87
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  version: z.ZodNumber;
88
101
  }, z.core.$strip>], "kind">;
89
102
  }, z.core.$strip>;
103
+ export declare const PLAN_ID_RE: RegExp;
90
104
  export declare const PlanPartSchema: z.ZodObject<{
91
105
  type: z.ZodLiteral<"data-plan">;
92
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  id: z.ZodString;
@@ -106,6 +120,19 @@ export declare const PlanPartSchema: z.ZodObject<{
106
120
  count: z.ZodNumber;
107
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  }, z.core.$strip>>;
108
122
  }, z.core.$strip>>;
123
+ grounding: z.ZodOptional<z.ZodObject<{
124
+ status: z.ZodString;
125
+ snapshot: z.ZodString;
126
+ claims: z.ZodArray<z.ZodString>;
127
+ template: z.ZodOptional<z.ZodString>;
128
+ settings: z.ZodOptional<z.ZodArray<z.ZodObject<{
129
+ step: z.ZodString;
130
+ name: z.ZodString;
131
+ value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber, z.ZodBoolean, z.ZodArray<z.ZodString>]>;
132
+ source: z.ZodOptional<z.ZodString>;
133
+ }, z.core.$strip>>>;
134
+ reason: z.ZodString;
135
+ }, z.core.$strip>>;
109
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  maxSteps: z.ZodNumber;
110
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  track: z.ZodOptional<z.ZodString>;
111
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  step_type: z.ZodOptional<z.ZodString>;
@@ -147,11 +174,11 @@ export declare const FileReferencePartSchema: z.ZodObject<{
147
174
  }, z.core.$strip>>;
148
175
  }, z.core.$strip>;
149
176
  export declare const AskStatusSchema: z.ZodEnum<{
150
- pending: "pending";
151
177
  aborted: "aborted";
152
- resolved: "resolved";
153
- rejected: "rejected";
154
178
  expired: "expired";
179
+ pending: "pending";
180
+ rejected: "rejected";
181
+ resolved: "resolved";
155
182
  }>;
156
183
  export declare const AskPartSchema: z.ZodObject<{
157
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  type: z.ZodLiteral<"data-ask">;
@@ -160,15 +187,15 @@ export declare const AskPartSchema: z.ZodObject<{
160
187
  command: z.ZodString;
161
188
  detail: z.ZodOptional<z.ZodString>;
162
189
  status: z.ZodEnum<{
163
- pending: "pending";
164
190
  aborted: "aborted";
165
- resolved: "resolved";
166
- rejected: "rejected";
167
191
  expired: "expired";
192
+ pending: "pending";
193
+ rejected: "rejected";
194
+ resolved: "resolved";
168
195
  }>;
169
196
  reply: z.ZodOptional<z.ZodEnum<{
170
- once: "once";
171
197
  always: "always";
198
+ once: "once";
172
199
  reject: "reject";
173
200
  }>>;
174
201
  }, z.core.$strip>;
@@ -179,24 +206,24 @@ export declare const RunStartedPartSchema: z.ZodObject<{
179
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  stepCount: z.ZodNumber;
180
207
  }, z.core.$strip>;
181
208
  export declare const StepStatusSchema: z.ZodEnum<{
209
+ completed: "completed";
182
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  failed: "failed";
183
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  pending: "pending";
212
+ queued: "queued";
184
213
  running: "running";
185
- completed: "completed";
186
214
  skipped: "skipped";
187
- queued: "queued";
188
215
  }>;
189
216
  export declare const DagStepStateSchema: z.ZodObject<{
190
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  id: z.ZodString;
191
218
  name: z.ZodString;
192
219
  agent: z.ZodString;
193
220
  status: z.ZodEnum<{
221
+ completed: "completed";
194
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  failed: "failed";
195
223
  pending: "pending";
224
+ queued: "queued";
196
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  running: "running";
197
- completed: "completed";
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226
  skipped: "skipped";
199
- queued: "queued";
200
227
  }>;
201
228
  level: z.ZodNumber;
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  dependsOn: z.ZodArray<z.ZodString>;
@@ -214,12 +241,12 @@ export declare const DagStatePartSchema: z.ZodObject<{
214
241
  name: z.ZodString;
215
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  agent: z.ZodString;
216
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  status: z.ZodEnum<{
244
+ completed: "completed";
217
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  failed: "failed";
218
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  pending: "pending";
247
+ queued: "queued";
219
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  running: "running";
220
- completed: "completed";
221
249
  skipped: "skipped";
222
- queued: "queued";
223
250
  }>;
224
251
  level: z.ZodNumber;
225
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  dependsOn: z.ZodArray<z.ZodString>;
@@ -230,27 +257,27 @@ export declare const DagStatePartSchema: z.ZodObject<{
230
257
  }, z.core.$strict>>;
231
258
  }, z.core.$strict>;
232
259
  export declare const SynthesisPhaseSchema: z.ZodEnum<{
233
- failed: "failed";
234
- skipped: "skipped";
235
260
  complete: "complete";
261
+ drafting: "drafting";
262
+ failed: "failed";
236
263
  indexing: "indexing";
237
264
  persisting: "persisting";
238
- starting: "starting";
265
+ refining: "refining";
239
266
  researching: "researching";
240
- drafting: "drafting";
267
+ skipped: "skipped";
268
+ starting: "starting";
241
269
  validating: "validating";
242
- refining: "refining";
243
270
  }>;
244
271
  export declare const StepPhaseSchema: z.ZodEnum<{
245
- failed: "failed";
246
272
  complete: "complete";
247
- "sandbox-init": "sandbox-init";
248
273
  executing: "executing";
274
+ failed: "failed";
249
275
  "generating-metadata": "generating-metadata";
250
276
  "generating-summary": "generating-summary";
251
277
  indexing: "indexing";
252
278
  persisting: "persisting";
253
279
  retrying: "retrying";
280
+ "sandbox-init": "sandbox-init";
254
281
  warning: "warning";
255
282
  }>;
256
283
  export declare const StepActivityPartSchema: z.ZodObject<{
@@ -259,15 +286,15 @@ export declare const StepActivityPartSchema: z.ZodObject<{
259
286
  runId: z.ZodString;
260
287
  stepId: z.ZodString;
261
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  phase: z.ZodEnum<{
262
- failed: "failed";
263
289
  complete: "complete";
264
- "sandbox-init": "sandbox-init";
265
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  executing: "executing";
291
+ failed: "failed";
266
292
  "generating-metadata": "generating-metadata";
267
293
  "generating-summary": "generating-summary";
268
294
  indexing: "indexing";
269
295
  persisting: "persisting";
270
296
  retrying: "retrying";
297
+ "sandbox-init": "sandbox-init";
271
298
  warning: "warning";
272
299
  }>;
273
300
  activity: z.ZodString;
@@ -279,27 +306,27 @@ export declare const ActivityEntryPartSchema: z.ZodObject<{
279
306
  runId: z.ZodString;
280
307
  stepId: z.ZodString;
281
308
  phase: z.ZodUnion<readonly [z.ZodEnum<{
282
- failed: "failed";
283
309
  complete: "complete";
284
- "sandbox-init": "sandbox-init";
285
310
  executing: "executing";
311
+ failed: "failed";
286
312
  "generating-metadata": "generating-metadata";
287
313
  "generating-summary": "generating-summary";
288
314
  indexing: "indexing";
289
315
  persisting: "persisting";
290
316
  retrying: "retrying";
317
+ "sandbox-init": "sandbox-init";
291
318
  warning: "warning";
292
319
  }>, z.ZodEnum<{
293
- failed: "failed";
294
- skipped: "skipped";
295
320
  complete: "complete";
321
+ drafting: "drafting";
322
+ failed: "failed";
296
323
  indexing: "indexing";
297
324
  persisting: "persisting";
298
- starting: "starting";
325
+ refining: "refining";
299
326
  researching: "researching";
300
- drafting: "drafting";
327
+ skipped: "skipped";
328
+ starting: "starting";
301
329
  validating: "validating";
302
- refining: "refining";
303
330
  }>]>;
304
331
  activity: z.ZodString;
305
332
  at: z.ZodString;
@@ -308,8 +335,8 @@ export declare const FileTreeEntrySchema: z.ZodObject<{
308
335
  path: z.ZodString;
309
336
  size: z.ZodOptional<z.ZodNumber>;
310
337
  type: z.ZodEnum<{
311
- file: "file";
312
338
  directory: "directory";
339
+ file: "file";
313
340
  }>;
314
341
  }, z.core.$strip>;
315
342
  export declare const StepFileTreePartSchema: z.ZodObject<{
@@ -321,8 +348,8 @@ export declare const StepFileTreePartSchema: z.ZodObject<{
321
348
  path: z.ZodString;
322
349
  size: z.ZodOptional<z.ZodNumber>;
323
350
  type: z.ZodEnum<{
324
- file: "file";
325
351
  directory: "directory";
352
+ file: "file";
326
353
  }>;
327
354
  }, z.core.$strip>>;
328
355
  }, z.core.$strip>;
@@ -330,12 +357,12 @@ export declare const StepOutputFileSchema: z.ZodObject<{
330
357
  path: z.ZodString;
331
358
  size: z.ZodNumber;
332
359
  fileType: z.ZodEnum<{
333
- output: "output";
334
- summary: "summary";
335
- script: "script";
336
360
  figure: "figure";
337
361
  log: "log";
338
362
  notebook: "notebook";
363
+ output: "output";
364
+ script: "script";
365
+ summary: "summary";
339
366
  }>;
340
367
  description: z.ZodString;
341
368
  }, z.core.$strip>;
@@ -349,12 +376,12 @@ export declare const StepOutputPartSchema: z.ZodObject<{
349
376
  path: z.ZodString;
350
377
  size: z.ZodNumber;
351
378
  fileType: z.ZodEnum<{
352
- output: "output";
353
- summary: "summary";
354
- script: "script";
355
379
  figure: "figure";
356
380
  log: "log";
357
381
  notebook: "notebook";
382
+ output: "output";
383
+ script: "script";
384
+ summary: "summary";
358
385
  }>;
359
386
  description: z.ZodString;
360
387
  }, z.core.$strip>>;
@@ -397,9 +424,9 @@ export declare const StepBlockedPartSchema: z.ZodObject<{
397
424
  export declare const RunCompletedFindingSchema: z.ZodObject<{
398
425
  title: z.ZodString;
399
426
  confidence: z.ZodEnum<{
427
+ high: "high";
400
428
  low: "low";
401
429
  medium: "medium";
402
- high: "high";
403
430
  }>;
404
431
  }, z.core.$strip>;
405
432
  export declare const RunCompletedPartSchema: z.ZodObject<{
@@ -415,9 +442,9 @@ export declare const RunCompletedPartSchema: z.ZodObject<{
415
442
  findings: z.ZodArray<z.ZodObject<{
416
443
  title: z.ZodString;
417
444
  confidence: z.ZodEnum<{
445
+ high: "high";
418
446
  low: "low";
419
447
  medium: "medium";
420
- high: "high";
421
448
  }>;
422
449
  }, z.core.$strip>>;
423
450
  note: z.ZodOptional<z.ZodString>;
@@ -434,10 +461,10 @@ export declare const FindingReferenceSchema: z.ZodObject<{
434
461
  citation: z.ZodString;
435
462
  relevance: z.ZodString;
436
463
  concordance: z.ZodEnum<{
437
- supports: "supports";
464
+ contextualizes: "contextualizes";
438
465
  contradicts: "contradicts";
439
466
  extends: "extends";
440
- contextualizes: "contextualizes";
467
+ supports: "supports";
441
468
  }>;
442
469
  }, z.core.$strip>;
443
470
  export declare const SynthesizedFindingSchema: z.ZodObject<{
@@ -445,16 +472,16 @@ export declare const SynthesizedFindingSchema: z.ZodObject<{
445
472
  title: z.ZodString;
446
473
  description: z.ZodString;
447
474
  confidence: z.ZodEnum<{
475
+ high: "high";
448
476
  low: "low";
449
477
  medium: "medium";
450
- high: "high";
451
478
  }>;
452
479
  noveltyStatus: z.ZodEnum<{
453
- novel: "novel";
454
480
  confirmed: "confirmed";
455
- partially_confirmed: "partially_confirmed";
456
481
  contradicted: "contradicted";
457
482
  expected: "expected";
483
+ novel: "novel";
484
+ partially_confirmed: "partially_confirmed";
458
485
  }>;
459
486
  literatureInterpretation: z.ZodString;
460
487
  references: z.ZodArray<z.ZodObject<{
@@ -462,10 +489,10 @@ export declare const SynthesizedFindingSchema: z.ZodObject<{
462
489
  citation: z.ZodString;
463
490
  relevance: z.ZodString;
464
491
  concordance: z.ZodEnum<{
465
- supports: "supports";
492
+ contextualizes: "contextualizes";
466
493
  contradicts: "contradicts";
467
494
  extends: "extends";
468
- contextualizes: "contextualizes";
495
+ supports: "supports";
469
496
  }>;
470
497
  }, z.core.$strip>>;
471
498
  }, z.core.$strip>;
@@ -488,16 +515,16 @@ export declare const RunSynthesisPartSchema: z.ZodObject<{
488
515
  title: z.ZodString;
489
516
  description: z.ZodString;
490
517
  confidence: z.ZodEnum<{
518
+ high: "high";
491
519
  low: "low";
492
520
  medium: "medium";
493
- high: "high";
494
521
  }>;
495
522
  noveltyStatus: z.ZodEnum<{
496
- novel: "novel";
497
523
  confirmed: "confirmed";
498
- partially_confirmed: "partially_confirmed";
499
524
  contradicted: "contradicted";
500
525
  expected: "expected";
526
+ novel: "novel";
527
+ partially_confirmed: "partially_confirmed";
501
528
  }>;
502
529
  literatureInterpretation: z.ZodString;
503
530
  references: z.ZodArray<z.ZodObject<{
@@ -505,10 +532,10 @@ export declare const RunSynthesisPartSchema: z.ZodObject<{
505
532
  citation: z.ZodString;
506
533
  relevance: z.ZodString;
507
534
  concordance: z.ZodEnum<{
508
- supports: "supports";
535
+ contextualizes: "contextualizes";
509
536
  contradicts: "contradicts";
510
537
  extends: "extends";
511
- contextualizes: "contextualizes";
538
+ supports: "supports";
512
539
  }>;
513
540
  }, z.core.$strip>>;
514
541
  }, z.core.$strip>>;
@@ -532,16 +559,16 @@ export declare const SynthesisProgressPartSchema: z.ZodObject<{
532
559
  id: z.ZodString;
533
560
  runId: z.ZodString;
534
561
  phase: z.ZodEnum<{
535
- failed: "failed";
536
- skipped: "skipped";
537
562
  complete: "complete";
563
+ drafting: "drafting";
564
+ failed: "failed";
538
565
  indexing: "indexing";
539
566
  persisting: "persisting";
540
- starting: "starting";
567
+ refining: "refining";
541
568
  researching: "researching";
542
- drafting: "drafting";
569
+ skipped: "skipped";
570
+ starting: "starting";
543
571
  validating: "validating";
544
- refining: "refining";
545
572
  }>;
546
573
  activity: z.ZodString;
547
574
  at: z.ZodOptional<z.ZodString>;
@@ -571,18 +598,59 @@ export declare const CompactionPartSchema: z.ZodObject<{
571
598
  type: z.ZodLiteral<"data-compaction">;
572
599
  id: z.ZodString;
573
600
  status: z.ZodEnum<{
601
+ done: "done";
574
602
  failed: "failed";
575
603
  running: "running";
576
- done: "done";
577
604
  }>;
578
605
  tokensBefore: z.ZodNumber;
579
606
  tokensAfter: z.ZodOptional<z.ZodNumber>;
580
607
  durationMs: z.ZodOptional<z.ZodNumber>;
581
608
  trigger: z.ZodOptional<z.ZodEnum<{
582
- "turn-start": "turn-start";
583
609
  "mid-turn": "mid-turn";
610
+ "turn-start": "turn-start";
584
611
  }>>;
585
612
  }, z.core.$strip>;
613
+ export declare const PauseCauseSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
614
+ kind: z.ZodLiteral<"outage">;
615
+ }, z.core.$strip>, z.ZodObject<{
616
+ kind: z.ZodLiteral<"credential">;
617
+ }, z.core.$strip>, z.ZodObject<{
618
+ kind: z.ZodLiteral<"host">;
619
+ reason: z.ZodString;
620
+ }, z.core.$strip>], "kind">;
621
+ export declare const PausePartSchema: z.ZodObject<{
622
+ type: z.ZodLiteral<"data-pause">;
623
+ id: z.ZodString;
624
+ workId: z.ZodString;
625
+ workKind: z.ZodEnum<{
626
+ profile: "profile";
627
+ run: "run";
628
+ turn: "turn";
629
+ }>;
630
+ state: z.ZodEnum<{
631
+ paused: "paused";
632
+ retrying: "retrying";
633
+ running: "running";
634
+ }>;
635
+ cause: z.ZodOptional<z.ZodDiscriminatedUnion<[z.ZodObject<{
636
+ kind: z.ZodLiteral<"outage">;
637
+ }, z.core.$strip>, z.ZodObject<{
638
+ kind: z.ZodLiteral<"credential">;
639
+ }, z.core.$strip>, z.ZodObject<{
640
+ kind: z.ZodLiteral<"host">;
641
+ reason: z.ZodString;
642
+ }, z.core.$strip>], "kind">>;
643
+ attempt: z.ZodOptional<z.ZodNumber>;
644
+ retryAt: z.ZodOptional<z.ZodString>;
645
+ }, z.core.$strip>;
646
+ export declare const ModelRetryPartSchema: z.ZodObject<{
647
+ type: z.ZodLiteral<"data-model-retry">;
648
+ id: z.ZodString;
649
+ attempt: z.ZodNumber;
650
+ maxRetries: z.ZodNumber;
651
+ retryAt: z.ZodString;
652
+ status: z.ZodOptional<z.ZodNumber>;
653
+ }, z.core.$strip>;
586
654
  export declare const SubAgentActivityEntrySchema: z.ZodObject<{
587
655
  agentId: z.ZodString;
588
656
  callPath: z.ZodArray<z.ZodString>;
@@ -591,10 +659,10 @@ export declare const SubAgentActivityEntrySchema: z.ZodObject<{
591
659
  startedAt: z.ZodString;
592
660
  endedAt: z.ZodOptional<z.ZodString>;
593
661
  outcome: z.ZodOptional<z.ZodEnum<{
594
- error: "error";
595
- ok: "ok";
596
662
  denied: "denied";
663
+ error: "error";
597
664
  incomplete: "incomplete";
665
+ ok: "ok";
598
666
  }>>;
599
667
  }, z.core.$strip>;
600
668
  export declare const SubAgentActivityPartSchema: z.ZodObject<{
@@ -609,10 +677,10 @@ export declare const SubAgentActivityPartSchema: z.ZodObject<{
609
677
  startedAt: z.ZodString;
610
678
  endedAt: z.ZodOptional<z.ZodString>;
611
679
  outcome: z.ZodOptional<z.ZodEnum<{
612
- error: "error";
613
- ok: "ok";
614
680
  denied: "denied";
681
+ error: "error";
615
682
  incomplete: "incomplete";
683
+ ok: "ok";
616
684
  }>>;
617
685
  }, z.core.$strip>>;
618
686
  dropped: z.ZodNumber;
@@ -623,7 +691,7 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
623
691
  title: z.ZodOptional<z.ZodString>;
624
692
  content: z.ZodDiscriminatedUnion<[z.ZodObject<{
625
693
  kind: z.ZodLiteral<"echart">;
626
- spec: z.ZodRecord<z.ZodString, z.ZodUnknown>;
694
+ spec: z.ZodRecord<z.ZodString, z.ZodJSONSchema>;
627
695
  dataPath: z.ZodOptional<z.ZodString>;
628
696
  }, z.core.$strip>, z.ZodObject<{
629
697
  kind: z.ZodLiteral<"markdown">;
@@ -643,8 +711,8 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
643
711
  }, z.core.$strip>, z.ZodObject<{
644
712
  kind: z.ZodLiteral<"structure">;
645
713
  format: z.ZodEnum<{
646
- pdb: "pdb";
647
714
  mmcif: "mmcif";
715
+ pdb: "pdb";
648
716
  }>;
649
717
  url: z.ZodURL;
650
718
  provider: z.ZodLiteral<"alphafold">;
@@ -670,6 +738,19 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
670
738
  count: z.ZodNumber;
671
739
  }, z.core.$strip>>;
672
740
  }, z.core.$strip>>;
741
+ grounding: z.ZodOptional<z.ZodObject<{
742
+ status: z.ZodString;
743
+ snapshot: z.ZodString;
744
+ claims: z.ZodArray<z.ZodString>;
745
+ template: z.ZodOptional<z.ZodString>;
746
+ settings: z.ZodOptional<z.ZodArray<z.ZodObject<{
747
+ step: z.ZodString;
748
+ name: z.ZodString;
749
+ value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber, z.ZodBoolean, z.ZodArray<z.ZodString>]>;
750
+ source: z.ZodOptional<z.ZodString>;
751
+ }, z.core.$strip>>>;
752
+ reason: z.ZodString;
753
+ }, z.core.$strip>>;
673
754
  maxSteps: z.ZodNumber;
674
755
  track: z.ZodOptional<z.ZodString>;
675
756
  step_type: z.ZodOptional<z.ZodString>;
@@ -708,15 +789,15 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
708
789
  command: z.ZodString;
709
790
  detail: z.ZodOptional<z.ZodString>;
710
791
  status: z.ZodEnum<{
711
- pending: "pending";
712
792
  aborted: "aborted";
713
- resolved: "resolved";
714
- rejected: "rejected";
715
793
  expired: "expired";
794
+ pending: "pending";
795
+ rejected: "rejected";
796
+ resolved: "resolved";
716
797
  }>;
717
798
  reply: z.ZodOptional<z.ZodEnum<{
718
- once: "once";
719
799
  always: "always";
800
+ once: "once";
720
801
  reject: "reject";
721
802
  }>>;
722
803
  }, z.core.$strip>, z.ZodObject<{
@@ -733,12 +814,12 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
733
814
  name: z.ZodString;
734
815
  agent: z.ZodString;
735
816
  status: z.ZodEnum<{
817
+ completed: "completed";
736
818
  failed: "failed";
737
819
  pending: "pending";
820
+ queued: "queued";
738
821
  running: "running";
739
- completed: "completed";
740
822
  skipped: "skipped";
741
- queued: "queued";
742
823
  }>;
743
824
  level: z.ZodNumber;
744
825
  dependsOn: z.ZodArray<z.ZodString>;
@@ -753,15 +834,15 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
753
834
  runId: z.ZodString;
754
835
  stepId: z.ZodString;
755
836
  phase: z.ZodEnum<{
756
- failed: "failed";
757
837
  complete: "complete";
758
- "sandbox-init": "sandbox-init";
759
838
  executing: "executing";
839
+ failed: "failed";
760
840
  "generating-metadata": "generating-metadata";
761
841
  "generating-summary": "generating-summary";
762
842
  indexing: "indexing";
763
843
  persisting: "persisting";
764
844
  retrying: "retrying";
845
+ "sandbox-init": "sandbox-init";
765
846
  warning: "warning";
766
847
  }>;
767
848
  activity: z.ZodString;
@@ -772,27 +853,27 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
772
853
  runId: z.ZodString;
773
854
  stepId: z.ZodString;
774
855
  phase: z.ZodUnion<readonly [z.ZodEnum<{
775
- failed: "failed";
776
856
  complete: "complete";
777
- "sandbox-init": "sandbox-init";
778
857
  executing: "executing";
858
+ failed: "failed";
779
859
  "generating-metadata": "generating-metadata";
780
860
  "generating-summary": "generating-summary";
781
861
  indexing: "indexing";
782
862
  persisting: "persisting";
783
863
  retrying: "retrying";
864
+ "sandbox-init": "sandbox-init";
784
865
  warning: "warning";
785
866
  }>, z.ZodEnum<{
786
- failed: "failed";
787
- skipped: "skipped";
788
867
  complete: "complete";
868
+ drafting: "drafting";
869
+ failed: "failed";
789
870
  indexing: "indexing";
790
871
  persisting: "persisting";
791
- starting: "starting";
872
+ refining: "refining";
792
873
  researching: "researching";
793
- drafting: "drafting";
874
+ skipped: "skipped";
875
+ starting: "starting";
794
876
  validating: "validating";
795
- refining: "refining";
796
877
  }>]>;
797
878
  activity: z.ZodString;
798
879
  at: z.ZodString;
@@ -808,10 +889,10 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
808
889
  startedAt: z.ZodString;
809
890
  endedAt: z.ZodOptional<z.ZodString>;
810
891
  outcome: z.ZodOptional<z.ZodEnum<{
811
- error: "error";
812
- ok: "ok";
813
892
  denied: "denied";
893
+ error: "error";
814
894
  incomplete: "incomplete";
895
+ ok: "ok";
815
896
  }>>;
816
897
  }, z.core.$strip>>;
817
898
  dropped: z.ZodNumber;
@@ -824,8 +905,8 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
824
905
  path: z.ZodString;
825
906
  size: z.ZodOptional<z.ZodNumber>;
826
907
  type: z.ZodEnum<{
827
- file: "file";
828
908
  directory: "directory";
909
+ file: "file";
829
910
  }>;
830
911
  }, z.core.$strip>>;
831
912
  }, z.core.$strip>, z.ZodObject<{
@@ -838,12 +919,12 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
838
919
  path: z.ZodString;
839
920
  size: z.ZodNumber;
840
921
  fileType: z.ZodEnum<{
841
- output: "output";
842
- summary: "summary";
843
- script: "script";
844
922
  figure: "figure";
845
923
  log: "log";
846
924
  notebook: "notebook";
925
+ output: "output";
926
+ script: "script";
927
+ summary: "summary";
847
928
  }>;
848
929
  description: z.ZodString;
849
930
  }, z.core.$strip>>;
@@ -890,16 +971,16 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
890
971
  title: z.ZodString;
891
972
  description: z.ZodString;
892
973
  confidence: z.ZodEnum<{
974
+ high: "high";
893
975
  low: "low";
894
976
  medium: "medium";
895
- high: "high";
896
977
  }>;
897
978
  noveltyStatus: z.ZodEnum<{
898
- novel: "novel";
899
979
  confirmed: "confirmed";
900
- partially_confirmed: "partially_confirmed";
901
980
  contradicted: "contradicted";
902
981
  expected: "expected";
982
+ novel: "novel";
983
+ partially_confirmed: "partially_confirmed";
903
984
  }>;
904
985
  literatureInterpretation: z.ZodString;
905
986
  references: z.ZodArray<z.ZodObject<{
@@ -907,10 +988,10 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
907
988
  citation: z.ZodString;
908
989
  relevance: z.ZodString;
909
990
  concordance: z.ZodEnum<{
910
- supports: "supports";
991
+ contextualizes: "contextualizes";
911
992
  contradicts: "contradicts";
912
993
  extends: "extends";
913
- contextualizes: "contextualizes";
994
+ supports: "supports";
914
995
  }>;
915
996
  }, z.core.$strip>>;
916
997
  }, z.core.$strip>>;
@@ -933,16 +1014,16 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
933
1014
  id: z.ZodString;
934
1015
  runId: z.ZodString;
935
1016
  phase: z.ZodEnum<{
936
- failed: "failed";
937
- skipped: "skipped";
938
1017
  complete: "complete";
1018
+ drafting: "drafting";
1019
+ failed: "failed";
939
1020
  indexing: "indexing";
940
1021
  persisting: "persisting";
941
- starting: "starting";
1022
+ refining: "refining";
942
1023
  researching: "researching";
943
- drafting: "drafting";
1024
+ skipped: "skipped";
1025
+ starting: "starting";
944
1026
  validating: "validating";
945
- refining: "refining";
946
1027
  }>;
947
1028
  activity: z.ZodString;
948
1029
  at: z.ZodOptional<z.ZodString>;
@@ -962,9 +1043,9 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
962
1043
  findings: z.ZodArray<z.ZodObject<{
963
1044
  title: z.ZodString;
964
1045
  confidence: z.ZodEnum<{
1046
+ high: "high";
965
1047
  low: "low";
966
1048
  medium: "medium";
967
- high: "high";
968
1049
  }>;
969
1050
  }, z.core.$strip>>;
970
1051
  note: z.ZodOptional<z.ZodString>;
@@ -994,15 +1075,46 @@ export declare const ChatPartSchema: z.ZodDiscriminatedUnion<[z.ZodObject<{
994
1075
  type: z.ZodLiteral<"data-compaction">;
995
1076
  id: z.ZodString;
996
1077
  status: z.ZodEnum<{
1078
+ done: "done";
997
1079
  failed: "failed";
998
1080
  running: "running";
999
- done: "done";
1000
1081
  }>;
1001
1082
  tokensBefore: z.ZodNumber;
1002
1083
  tokensAfter: z.ZodOptional<z.ZodNumber>;
1003
1084
  durationMs: z.ZodOptional<z.ZodNumber>;
1004
1085
  trigger: z.ZodOptional<z.ZodEnum<{
1005
- "turn-start": "turn-start";
1006
1086
  "mid-turn": "mid-turn";
1087
+ "turn-start": "turn-start";
1007
1088
  }>>;
1089
+ }, z.core.$strip>, z.ZodObject<{
1090
+ type: z.ZodLiteral<"data-pause">;
1091
+ id: z.ZodString;
1092
+ workId: z.ZodString;
1093
+ workKind: z.ZodEnum<{
1094
+ profile: "profile";
1095
+ run: "run";
1096
+ turn: "turn";
1097
+ }>;
1098
+ state: z.ZodEnum<{
1099
+ paused: "paused";
1100
+ retrying: "retrying";
1101
+ running: "running";
1102
+ }>;
1103
+ cause: z.ZodOptional<z.ZodDiscriminatedUnion<[z.ZodObject<{
1104
+ kind: z.ZodLiteral<"outage">;
1105
+ }, z.core.$strip>, z.ZodObject<{
1106
+ kind: z.ZodLiteral<"credential">;
1107
+ }, z.core.$strip>, z.ZodObject<{
1108
+ kind: z.ZodLiteral<"host">;
1109
+ reason: z.ZodString;
1110
+ }, z.core.$strip>], "kind">>;
1111
+ attempt: z.ZodOptional<z.ZodNumber>;
1112
+ retryAt: z.ZodOptional<z.ZodString>;
1113
+ }, z.core.$strip>, z.ZodObject<{
1114
+ type: z.ZodLiteral<"data-model-retry">;
1115
+ id: z.ZodString;
1116
+ attempt: z.ZodNumber;
1117
+ maxRetries: z.ZodNumber;
1118
+ retryAt: z.ZodString;
1119
+ status: z.ZodOptional<z.ZodNumber>;
1008
1120
  }, z.core.$strip>], "type">;