@inflexa-ai/harness 0.45.0 → 0.46.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +6 -3
- package/dist/agents/conversation-agent.d.ts +19 -3
- package/dist/agents/conversation-agent.js +49 -30
- package/dist/agents/report-session-agent.d.ts +15 -15
- package/dist/agents/report-session-agent.js +23 -15
- package/dist/agents/sandbox/index.d.ts +1 -1
- package/dist/agents/sandbox/index.js +1 -1
- package/dist/agents/sandbox/shared.d.ts +35 -16
- package/dist/agents/sandbox/shared.js +63 -24
- package/dist/agents/sandbox/translational-safety-agent.js +26 -0
- package/dist/agents/sandbox/types.d.ts +26 -3
- package/dist/agents/sandbox/validate-skills.d.ts +2 -2
- package/dist/agents/sandbox/validate-skills.js +3 -1
- package/dist/agents/sandbox-catalog.d.ts +16 -2
- package/dist/agents/sandbox-catalog.js +22 -3
- package/dist/agents/system-prompt.d.ts +2 -2
- package/dist/app/approve-plan.d.ts +5 -2
- package/dist/app/approve-plan.js +1 -1
- package/dist/app/chat-turn-workflow.d.ts +114 -0
- package/dist/app/chat-turn-workflow.js +307 -0
- package/dist/app/chat-turn.d.ts +85 -57
- package/dist/app/chat-turn.js +125 -99
- package/dist/app/data-profile-orientation.js +10 -8
- package/dist/app/data-profile-view.d.ts +4 -4
- package/dist/app/data-profile-view.js +9 -8
- package/dist/app/in-process-turn.d.ts +42 -0
- package/dist/app/in-process-turn.js +139 -0
- package/dist/app/message-assembly.d.ts +10 -4
- package/dist/app/message-assembly.js +13 -8
- package/dist/app/report-session-runtime.d.ts +4 -4
- package/dist/app/report-session-runtime.js +36 -21
- package/dist/app/spawn-report-session.d.ts +33 -28
- package/dist/app/spawn-report-session.js +25 -40
- package/dist/app/synthesize-run.d.ts +22 -16
- package/dist/app/synthesize-run.js +41 -35
- package/dist/app/work.d.ts +96 -0
- package/dist/app/work.js +147 -0
- package/dist/auth/local-auth-context.d.ts +1 -3
- package/dist/auth/local-auth-context.js +1 -3
- package/dist/auth/local-run-authorizer.d.ts +1 -1
- package/dist/auth/local-run-authorizer.js +5 -3
- package/dist/auth/types.d.ts +26 -26
- package/dist/billing/cached-resolver.d.ts +4 -4
- package/dist/billing/run-charge.d.ts +5 -8
- package/dist/billing/run-charge.js +2 -2
- package/dist/billing/usage-recorder.d.ts +9 -9
- package/dist/citations/aggregate.js +1 -1
- package/dist/citations/clients/arxiv.d.ts +2 -2
- package/dist/citations/clients/arxiv.js +12 -4
- package/dist/citations/clients/common.js +4 -2
- package/dist/citations/clients/crossref.d.ts +2 -2
- package/dist/citations/clients/crossref.js +37 -37
- package/dist/citations/clients/doi-registry.js +15 -16
- package/dist/citations/clients/pubmed.d.ts +2 -2
- package/dist/citations/clients/pubmed.js +20 -13
- package/dist/citations/clients/semantic-scholar.d.ts +2 -2
- package/dist/citations/clients/semantic-scholar.js +9 -9
- package/dist/citations/compare.js +2 -2
- package/dist/citations/match.d.ts +2 -2
- package/dist/citations/match.js +12 -7
- package/dist/citations/normalize.js +35 -26
- package/dist/citations/plan.js +6 -2
- package/dist/citations/resolve.d.ts +6 -6
- package/dist/citations/resolve.js +34 -25
- package/dist/citations/types.d.ts +77 -77
- package/dist/config/environment-stores.d.ts +10 -8
- package/dist/config/resource-limits.js +1 -3
- package/dist/contracts/analogy-report.d.ts +7 -7
- package/dist/contracts/analogy-report.js +2 -2
- package/dist/contracts/chat-events.d.ts +46 -22
- package/dist/contracts/chat-events.js +1 -1
- package/dist/contracts/chat-frame.d.ts +15 -5
- package/dist/contracts/chat-frame.js +67 -40
- package/dist/contracts/chat-parts.d.ts +130 -67
- package/dist/contracts/chat-parts.js +1 -0
- package/dist/contracts/content-url.js +16 -2
- package/dist/contracts/data-profile.d.ts +38 -38
- package/dist/contracts/index.d.ts +3 -3
- package/dist/contracts/index.js +1 -1
- package/dist/contracts/message.d.ts +6 -6
- package/dist/contracts/organ-system.d.ts +11 -11
- package/dist/contracts/part-registry.d.ts +5 -4
- package/dist/contracts/part-registry.js +5 -0
- package/dist/contracts/profile-vocabulary.d.ts +11 -10
- package/dist/contracts/profile-vocabulary.js +10 -3
- package/dist/contracts/report-blocks.d.ts +329 -329
- package/dist/contracts/report-reference.d.ts +105 -81
- package/dist/contracts/report-reference.js +30 -13
- package/dist/contracts/schemas/chat-events.d.ts +45 -6
- package/dist/contracts/schemas/chat-events.js +16 -0
- package/dist/contracts/schemas/chat-parts.d.ts +214 -102
- package/dist/contracts/schemas/chat-parts.js +50 -7
- package/dist/contracts/schemas/index.d.ts +1 -1
- package/dist/contracts/schemas/index.js +1 -1
- package/dist/contracts/severity.d.ts +1 -1
- package/dist/contracts/structure-source.d.ts +3 -3
- package/dist/contracts/structure-source.js +6 -2
- package/dist/contracts/subagent-activity.d.ts +2 -2
- package/dist/contracts/subagent-activity.js +5 -3
- package/dist/contracts/usage.d.ts +2 -2
- package/dist/data/safety-panel-schema.d.ts +25 -25
- package/dist/data/safety-panel-schema.js +13 -4
- package/dist/execution/artifact-metadata.d.ts +23 -15
- package/dist/execution/artifact-metadata.js +33 -10
- package/dist/execution/artifact-record.d.ts +2 -2
- package/dist/execution/artifact-registration.d.ts +5 -5
- package/dist/execution/artifact-registry.d.ts +8 -8
- package/dist/execution/dbos-run-launcher.d.ts +24 -4
- package/dist/execution/dbos-run-launcher.js +58 -4
- package/dist/execution/dbos-workflow-purger.d.ts +7 -6
- package/dist/execution/dbos-workflow-purger.js +29 -21
- package/dist/execution/input-signature.d.ts +2 -2
- package/dist/execution/post-step-pipeline.d.ts +9 -9
- package/dist/execution/post-step-pipeline.js +1 -1
- package/dist/execution/post-step.js +2 -2
- package/dist/execution/reconcile-manifest.d.ts +4 -4
- package/dist/execution/reconcile-manifest.js +3 -2
- package/dist/execution/run-authorizer.d.ts +46 -37
- package/dist/execution/run-authorizer.js +8 -8
- package/dist/execution/run-canceler.d.ts +39 -17
- package/dist/execution/run-canceler.js +137 -28
- package/dist/execution/run-end-record.d.ts +29 -0
- package/dist/execution/run-end-record.js +27 -0
- package/dist/execution/run-event-parts.d.ts +0 -8
- package/dist/execution/run-event-parts.js +29 -24
- package/dist/execution/run-event-stream.d.ts +8 -8
- package/dist/execution/run-event-stream.js +3 -4
- package/dist/execution/run-launcher.d.ts +4 -4
- package/dist/execution/run-synthesis.d.ts +49 -48
- package/dist/execution/run-synthesis.js +96 -255
- package/dist/execution/staged-input.d.ts +2 -2
- package/dist/execution/step-summary.d.ts +6 -6
- package/dist/execution/step-summary.js +4 -8
- package/dist/execution/topo-sort.js +4 -3
- package/dist/execution/workflow-purger.d.ts +2 -2
- package/dist/index.d.ts +25 -24
- package/dist/index.js +36 -37
- package/dist/input-sanitization.js +9 -2
- package/dist/input-scan/clustering.d.ts +6 -6
- package/dist/input-scan/clustering.js +11 -5
- package/dist/input-scan/companions.js +3 -2
- package/dist/input-scan/detect-sets.d.ts +2 -2
- package/dist/input-scan/detect-sets.js +25 -21
- package/dist/input-scan/enrich.d.ts +6 -6
- package/dist/input-scan/enrich.js +29 -12
- package/dist/input-scan/formats.d.ts +2 -2
- package/dist/input-scan/formats.js +8 -2
- package/dist/input-scan/markers.d.ts +2 -2
- package/dist/input-scan/markers.js +14 -5
- package/dist/input-scan/menu.d.ts +10 -10
- package/dist/input-scan/menu.js +0 -0
- package/dist/input-scan/quarantine.d.ts +2 -2
- package/dist/input-scan/quarantine.js +23 -18
- package/dist/input-scan/readout-budget.d.ts +2 -2
- package/dist/input-scan/readout-budget.js +1 -1
- package/dist/input-scan/readout.d.ts +2 -2
- package/dist/input-scan/readout.js +47 -34
- package/dist/input-scan/scan.d.ts +2 -2
- package/dist/input-scan/scan.js +7 -5
- package/dist/input-scan/set-types.d.ts +28 -28
- package/dist/input-scan/shapes.d.ts +4 -4
- package/dist/input-scan/shapes.js +0 -0
- package/dist/input-scan/templates.d.ts +10 -10
- package/dist/input-scan/templates.js +30 -22
- package/dist/input-scan/tokens.d.ts +6 -4
- package/dist/input-scan/tokens.js +100 -38
- package/dist/input-scan/types.d.ts +22 -22
- package/dist/lib/async-utils.d.ts +3 -7
- package/dist/lib/async-utils.js +5 -9
- package/dist/lib/cache.js +1 -1
- package/dist/lib/chrome.d.ts +46 -6
- package/dist/lib/console-logger.js +2 -2
- package/dist/lib/db-result.d.ts +22 -6
- package/dist/lib/db-result.js +9 -13
- package/dist/lib/eyes.d.ts +4 -4
- package/dist/lib/eyes.js +1 -1
- package/dist/lib/fs-helpers.js +18 -6
- package/dist/lib/fs-result.d.ts +1 -0
- package/dist/lib/fs-result.js +5 -6
- package/dist/lib/hooks.d.ts +23 -7
- package/dist/lib/hooks.js +17 -3
- package/dist/lib/host-concurrency.js +3 -2
- package/dist/lib/logger.d.ts +2 -2
- package/dist/lib/logger.js +2 -1
- package/dist/lib/metrics.d.ts +1 -1
- package/dist/lib/null-proto.d.ts +6 -0
- package/dist/lib/null-proto.js +17 -0
- package/dist/lib/otel-spans.d.ts +1 -1
- package/dist/lib/otel-spans.js +9 -5
- package/dist/lib/otel.d.ts +4 -2
- package/dist/lib/otel.js +10 -2
- package/dist/lib/page-capture.d.ts +8 -8
- package/dist/lib/page-capture.js +9 -4
- package/dist/lib/parse-json.d.ts +5 -0
- package/dist/lib/parse-json.js +12 -0
- package/dist/lib/present.d.ts +12 -0
- package/dist/lib/present.js +39 -0
- package/dist/lib/rate-limit.d.ts +4 -4
- package/dist/lib/rate-limit.js +12 -13
- package/dist/lib/regulatory-corpus/fetch-fda-guidance.d.ts +4 -4
- package/dist/lib/regulatory-corpus/fetch-fda-guidance.js +4 -10
- package/dist/lib/regulatory-corpus/fetch-ich.d.ts +4 -4
- package/dist/lib/regulatory-corpus/fetch-ich.js +18 -14
- package/dist/lib/regulatory-corpus/normalize-whitespace.d.ts +6 -0
- package/dist/lib/regulatory-corpus/normalize-whitespace.js +41 -0
- package/dist/lib/regulatory-corpus.d.ts +10 -10
- package/dist/lib/regulatory-corpus.js +3 -1
- package/dist/lib/result.d.ts +10 -11
- package/dist/lib/result.js +15 -13
- package/dist/lib/storage.d.ts +2 -2
- package/dist/lib/test/async-iterable.d.ts +9 -0
- package/dist/lib/test/async-iterable.js +28 -0
- package/dist/lib/test/request-url.d.ts +5 -0
- package/dist/lib/test/request-url.js +7 -0
- package/dist/lib/test/result-assert.d.ts +12 -0
- package/dist/lib/test/result-assert.js +17 -0
- package/dist/lib/test/text-shapes.d.ts +24 -0
- package/dist/lib/test/text-shapes.js +63 -0
- package/dist/lib/text.d.ts +22 -0
- package/dist/lib/text.js +68 -0
- package/dist/lib/thrown.d.ts +18 -0
- package/dist/lib/thrown.js +30 -0
- package/dist/lib/unknown-array.d.ts +6 -0
- package/dist/lib/unknown-array.js +8 -0
- package/dist/lib/unknown-containers.d.ts +14 -0
- package/dist/lib/unknown-containers.js +17 -0
- package/dist/lib/unknown-text.d.ts +8 -0
- package/dist/lib/unknown-text.js +28 -0
- package/dist/lib/zod-issue-shape.d.ts +1 -1
- package/dist/lib/zod-issue-shape.js +31 -31
- package/dist/lib/zod-issues.d.ts +3 -3
- package/dist/lib/zod-issues.js +30 -17
- package/dist/literature/sources/arxiv.d.ts +6 -6
- package/dist/literature/sources/arxiv.js +92 -35
- package/dist/literature/sources/http.d.ts +2 -2
- package/dist/literature/sources/http.js +16 -15
- package/dist/literature/sources/pubmed.d.ts +16 -16
- package/dist/literature/sources/pubmed.js +96 -61
- package/dist/literature/sources/semantic-scholar.d.ts +8 -8
- package/dist/literature/sources/semantic-scholar.js +22 -13
- package/dist/loop/accounting.d.ts +63 -0
- package/dist/loop/accounting.js +141 -0
- package/dist/loop/call-policy.d.ts +73 -0
- package/dist/loop/call-policy.js +109 -0
- package/dist/loop/chat-stream.d.ts +62 -0
- package/dist/loop/chat-stream.js +237 -0
- package/dist/loop/compaction.d.ts +14 -9
- package/dist/loop/compaction.js +17 -0
- package/dist/loop/metrics.d.ts +12 -15
- package/dist/loop/metrics.js +14 -26
- package/dist/loop/run-loop.d.ts +233 -0
- package/dist/loop/run-loop.js +770 -0
- package/dist/loop/sub-agent.d.ts +61 -0
- package/dist/loop/sub-agent.js +161 -0
- package/dist/loop/tool-adapter.d.ts +98 -0
- package/dist/loop/tool-adapter.js +364 -0
- package/dist/loop/tool-detail.d.ts +1 -1
- package/dist/loop/tool-detail.js +6 -5
- package/dist/loop/tool-outcome.d.ts +1 -1
- package/dist/loop/tool-output.d.ts +4 -4
- package/dist/loop/tool-output.js +2 -2
- package/dist/loop/turn-credentials.d.ts +34 -0
- package/dist/loop/turn-credentials.js +73 -0
- package/dist/loop/types.d.ts +34 -37
- package/dist/loop/types.js +2 -7
- package/dist/memory/ai-sdk-message-storage.d.ts +5 -5
- package/dist/memory/ai-sdk-message-storage.js +13 -11
- package/dist/memory/card-builders.d.ts +14 -14
- package/dist/memory/card-builders.js +19 -15
- package/dist/memory/conversation-display-recorder.d.ts +22 -6
- package/dist/memory/conversation-display-recorder.js +64 -20
- package/dist/memory/conversation-display-replay.js +3 -2
- package/dist/memory/conversation-display-storage.d.ts +15 -7
- package/dist/memory/conversation-display-storage.js +141 -36
- package/dist/memory/conversation-view.d.ts +4 -4
- package/dist/memory/conversation-view.js +5 -4
- package/dist/memory/count-tokens.js +10 -8
- package/dist/memory/derive-thread-title.d.ts +0 -13
- package/dist/memory/derive-thread-title.js +2 -1
- package/dist/memory/message-backfill.d.ts +12 -5
- package/dist/memory/message-backfill.js +5 -3
- package/dist/memory/thread-history.d.ts +66 -24
- package/dist/memory/thread-history.js +212 -79
- package/dist/memory/thread-store.d.ts +26 -17
- package/dist/memory/thread-store.js +15 -9
- package/dist/memory/tool-call-integrity.d.ts +2 -2
- package/dist/memory/tool-call-integrity.js +4 -3
- package/dist/memory/working-memory.d.ts +16 -12
- package/dist/memory/working-memory.js +72 -61
- package/dist/prompts/briefing.d.ts +63 -9
- package/dist/prompts/briefing.js +130 -3
- package/dist/prompts/planner.js +13 -2
- package/dist/prompts/synthesis-agent.d.ts +1 -1
- package/dist/prompts/synthesis-agent.js +6 -14
- package/dist/provenance/collector.d.ts +6 -6
- package/dist/provenance/collector.js +15 -8
- package/dist/provenance/exec-frame.d.ts +2 -2
- package/dist/provenance/exec-frame.js +6 -1
- package/dist/provenance/seam.d.ts +24 -19
- package/dist/provenance/seam.js +7 -5
- package/dist/provenance/types.d.ts +6 -6
- package/dist/providers/ai-sdk.d.ts +113 -62
- package/dist/providers/ai-sdk.js +303 -458
- package/dist/providers/embedding.d.ts +2 -2
- package/dist/providers/embedding.js +1 -1
- package/dist/providers/errors.d.ts +22 -2
- package/dist/providers/errors.js +98 -50
- package/dist/providers/prompt-cache.d.ts +8 -8
- package/dist/providers/prompt-cache.js +13 -11
- package/dist/providers/reasoning.d.ts +2 -2
- package/dist/providers/reasoning.js +2 -2
- package/dist/providers/types.d.ts +59 -92
- package/dist/reference-data/catalog.d.ts +2 -15
- package/dist/reference-data/catalog.js +166 -10
- package/dist/reference-data/receipt.d.ts +2 -2
- package/dist/report-model/assert-rules.js +1 -1
- package/dist/report-model/authoring-grammar.d.ts +209 -231
- package/dist/report-model/block-walk.d.ts +10 -10
- package/dist/report-model/block-walk.js +2 -0
- package/dist/report-model/draft-finish.d.ts +8 -8
- package/dist/report-model/draft-finish.js +1 -1
- package/dist/report-model/draft-hash.js +8 -7
- package/dist/report-model/draft-operations.d.ts +22 -10
- package/dist/report-model/draft-operations.js +48 -30
- package/dist/report-model/draft-read.d.ts +19 -7
- package/dist/report-model/draft-read.js +16 -6
- package/dist/report-model/draft.d.ts +844 -2
- package/dist/report-model/draft.js +3 -1
- package/dist/report-model/fixture-resolver.js +39 -16
- package/dist/report-model/pin-snapshot.d.ts +2 -2
- package/dist/report-model/pin-snapshot.js +15 -15
- package/dist/report-model/production-resolver.d.ts +18 -18
- package/dist/report-model/production-resolver.js +50 -42
- package/dist/report-model/reference-resolver.d.ts +26 -10
- package/dist/report-model/reference-resolver.js +68 -5
- package/dist/report-model/reference-stamp.js +30 -38
- package/dist/report-model/structural-validation.js +12 -4
- package/dist/report-model/validate.d.ts +7 -7
- package/dist/report-model/validate.js +6 -6
- package/dist/report-render/assets.d.ts +2 -2
- package/dist/report-render/assets.js +27 -3
- package/dist/report-render/chart-export.d.ts +10 -2
- package/dist/report-render/chart-export.js +37 -11
- package/dist/report-render/chart-presets.d.ts +8 -8
- package/dist/report-render/chart-presets.js +3 -3
- package/dist/report-render/chart-renderers.d.ts +23 -16
- package/dist/report-render/chart-renderers.js +74 -53
- package/dist/report-render/chart-toolbox.d.ts +2 -2
- package/dist/report-render/chart-toolbox.js +7 -6
- package/dist/report-render/chart.d.ts +15 -16
- package/dist/report-render/chart.js +369 -252
- package/dist/report-render/design.d.ts +36 -297
- package/dist/report-render/design.js +0 -12
- package/dist/report-render/figures/common.d.ts +12 -12
- package/dist/report-render/figures/common.js +42 -31
- package/dist/report-render/figures/dendrogram.d.ts +3 -3
- package/dist/report-render/figures/dendrogram.js +10 -10
- package/dist/report-render/figures/dense.js +15 -8
- package/dist/report-render/figures/dotplot.js +46 -33
- package/dist/report-render/figures/embedding.js +52 -43
- package/dist/report-render/figures/equal-units.d.ts +10 -10
- package/dist/report-render/figures/equal-units.js +27 -27
- package/dist/report-render/figures/forest.js +9 -7
- package/dist/report-render/figures/gsea.js +21 -11
- package/dist/report-render/figures/heatmap.js +13 -9
- package/dist/report-render/figures/index.d.ts +10 -10
- package/dist/report-render/figures/index.js +4 -2
- package/dist/report-render/figures/km.js +10 -9
- package/dist/report-render/figures/label-room.d.ts +12 -12
- package/dist/report-render/figures/label-room.js +7 -2
- package/dist/report-render/figures/locuszoom.d.ts +2 -2
- package/dist/report-render/figures/locuszoom.js +59 -31
- package/dist/report-render/figures/lollipop.js +3 -2
- package/dist/report-render/figures/ma.js +8 -4
- package/dist/report-render/figures/manhattan.d.ts +1 -2
- package/dist/report-render/figures/manhattan.js +52 -34
- package/dist/report-render/figures/oncoprint.js +4 -5
- package/dist/report-render/figures/pca.js +25 -11
- package/dist/report-render/figures/qq.js +20 -9
- package/dist/report-render/figures/roc.js +1 -1
- package/dist/report-render/figures/sankey.d.ts +2 -2
- package/dist/report-render/figures/sankey.js +11 -10
- package/dist/report-render/figures/upset.d.ts +6 -6
- package/dist/report-render/figures/upset.js +7 -4
- package/dist/report-render/figures/volcano.js +12 -10
- package/dist/report-render/hybrid-svg.d.ts +4 -4
- package/dist/report-render/hybrid-svg.js +7 -5
- package/dist/report-render/number-format.d.ts +4 -4
- package/dist/report-render/number-format.js +62 -27
- package/dist/report-render/page.js +2 -1
- package/dist/report-render/provenance-data.d.ts +2 -2
- package/dist/report-render/references.d.ts +4 -4
- package/dist/report-render/render.d.ts +2 -2
- package/dist/report-render/render.js +10 -11
- package/dist/report-render/script-json.js +1 -1
- package/dist/report-render/table-data.d.ts +6 -6
- package/dist/report-render/test/options.d.ts +49 -0
- package/dist/report-render/test/options.js +143 -0
- package/dist/report-render/test/page-function.d.ts +19 -0
- package/dist/report-render/test/page-function.js +33 -0
- package/dist/report-render/types.d.ts +10 -10
- package/dist/report-render/value-bridge.d.ts +4 -4
- package/dist/report-render/value-bridge.js +27 -14
- package/dist/report-render/views/chart-view.d.ts +2 -2
- package/dist/report-render/views/chart-view.js +2 -2
- package/dist/report-render/views/lineage.d.ts +6 -6
- package/dist/report-render/views/lineage.js +2 -0
- package/dist/report-render/views/page-view.d.ts +2 -2
- package/dist/report-render/views/page-view.js +1 -0
- package/dist/report-render/views/prose.js +25 -8
- package/dist/report-render/views/references-view.js +12 -1
- package/dist/report-render/views/values.js +1 -1
- package/dist/runtime/assemble.d.ts +53 -26
- package/dist/runtime/assemble.js +103 -56
- package/dist/runtime/boot.d.ts +8 -7
- package/dist/runtime/boot.js +1 -1
- package/dist/runtime/connection-budget.d.ts +6 -6
- package/dist/runtime/connection-budget.js +1 -1
- package/dist/runtime/dbos.d.ts +29 -19
- package/dist/runtime/dbos.js +35 -20
- package/dist/runtime/result-serialization.js +18 -5
- package/dist/runtime/shutdown.d.ts +2 -2
- package/dist/sandbox/client.d.ts +7 -3
- package/dist/sandbox/cpu-files.d.ts +2 -2
- package/dist/sandbox/cpu-files.js +21 -4
- package/dist/sandbox/create-sandbox.d.ts +7 -8
- package/dist/sandbox/create-sandbox.js +6 -12
- package/dist/sandbox/docker-client.d.ts +48 -3
- package/dist/sandbox/docker-client.js +10 -6
- package/dist/sandbox/estimate-data-profile-resources.js +2 -7
- package/dist/sandbox/exec-outcome.d.ts +2 -2
- package/dist/sandbox/exec-outcome.js +1 -1
- package/dist/sandbox/exec.d.ts +10 -6
- package/dist/sandbox/exec.js +27 -12
- package/dist/sandbox/execution-id.js +14 -6
- package/dist/sandbox/farm.d.ts +2 -2
- package/dist/sandbox/farm.js +22 -27
- package/dist/sandbox/identity.d.ts +7 -0
- package/dist/sandbox/identity.js +14 -3
- package/dist/sandbox/image-packages.d.ts +26 -4
- package/dist/sandbox/image-packages.js +29 -27
- package/dist/sandbox/k8s-client.d.ts +35 -8
- package/dist/sandbox/k8s-client.js +6 -5
- package/dist/sandbox/labels.js +1 -0
- package/dist/sandbox/liveness.js +3 -1
- package/dist/sandbox/mount-plan.d.ts +10 -10
- package/dist/sandbox/mount-plan.js +13 -14
- package/dist/sandbox/notification-sweep.d.ts +4 -4
- package/dist/sandbox/notification-sweep.js +4 -7
- package/dist/sandbox/package-identity.d.ts +6 -13
- package/dist/sandbox/package-identity.js +46 -28
- package/dist/sandbox/reaper.d.ts +10 -10
- package/dist/sandbox/reaper.js +4 -6
- package/dist/sandbox/sandbox-error.d.ts +2 -9
- package/dist/sandbox/sandbox-error.js +21 -8
- package/dist/sandbox/sandbox-step-translate.d.ts +8 -5
- package/dist/sandbox/sandbox-step-translate.js +22 -8
- package/dist/sandbox/step-sandbox.d.ts +47 -0
- package/dist/sandbox/step-sandbox.js +53 -0
- package/dist/sandbox/types.d.ts +18 -19
- package/dist/sandbox/types.js +1 -1
- package/dist/schemas/artifact-manifest.d.ts +4 -4
- package/dist/schemas/data-profile-schemas.d.ts +351 -306
- package/dist/schemas/file-metadata.js +2 -4
- package/dist/schemas/plan-schemas.d.ts +79 -25
- package/dist/schemas/plan-schemas.js +1 -1
- package/dist/schemas/run-synthesis.d.ts +95 -26
- package/dist/schemas/run-synthesis.js +3 -1
- package/dist/schemas/validate-plan.d.ts +4 -4
- package/dist/schemas/validate-plan.js +17 -5
- package/dist/schemas/workflow-state.d.ts +127 -14
- package/dist/schemas/workflow-state.js +56 -2
- package/dist/state/active-turns.d.ts +36 -0
- package/dist/state/active-turns.js +67 -0
- package/dist/state/analyses-metrics.d.ts +8 -8
- package/dist/state/analyses-metrics.js +4 -4
- package/dist/state/analyses.d.ts +0 -14
- package/dist/state/analyses.js +0 -32
- package/dist/state/artifacts.d.ts +47 -18
- package/dist/state/artifacts.js +48 -7
- package/dist/state/data-profile.d.ts +2 -2
- package/dist/state/db.d.ts +12 -2
- package/dist/state/db.js +5 -0
- package/dist/state/edit-intents.d.ts +4 -0
- package/dist/state/edit-intents.js +71 -0
- package/dist/state/index.d.ts +5 -5
- package/dist/state/index.js +3 -3
- package/dist/state/init.d.ts +2 -1
- package/dist/state/init.js +5 -2
- package/dist/state/migrations/20260927120000_baseline.js +3 -1
- package/dist/state/migrations/20261026120000_add_the_edit_intents.d.ts +7 -0
- package/dist/state/migrations/20261026120000_add_the_edit_intents.js +21 -0
- package/dist/state/migrations/20261027120000_record_the_applied_memory_edits.d.ts +7 -0
- package/dist/state/migrations/20261027120000_record_the_applied_memory_edits.js +16 -0
- package/dist/state/migrations/20261027120100_store_the_authoring_results.d.ts +8 -0
- package/dist/state/migrations/20261027120100_store_the_authoring_results.js +20 -0
- package/dist/state/migrations/20261027120200_key_the_groups_of_a_turn.d.ts +7 -0
- package/dist/state/migrations/20261027120200_key_the_groups_of_a_turn.js +12 -0
- package/dist/state/migrations/20261027120300_mark_the_active_turn_of_a_thread.d.ts +7 -0
- package/dist/state/migrations/20261027120300_mark_the_active_turn_of_a_thread.js +11 -0
- package/dist/state/migrations/20261028120000_record_the_paused_work.d.ts +7 -0
- package/dist/state/migrations/20261028120000_record_the_paused_work.js +25 -0
- package/dist/state/migrations/20261028120100_end_the_suspended_runs.d.ts +8 -0
- package/dist/state/migrations/20261028120100_end_the_suspended_runs.js +13 -0
- package/dist/state/migrations/20261029120000_reference_the_run_mandate.d.ts +7 -0
- package/dist/state/migrations/20261029120000_reference_the_run_mandate.js +23 -0
- package/dist/state/migrations/20261029120100_record_the_run_session_of_a_pause.d.ts +7 -0
- package/dist/state/migrations/20261029120100_record_the_run_session_of_a_pause.js +11 -0
- package/dist/state/migrations/index.js +18 -0
- package/dist/state/paused-work.d.ts +52 -0
- package/dist/state/paused-work.js +105 -0
- package/dist/state/plans.d.ts +27 -8
- package/dist/state/plans.js +14 -11
- package/dist/state/purge-analysis.d.ts +6 -6
- package/dist/state/purge-analysis.js +10 -2
- package/dist/state/report-session-state.d.ts +43 -18
- package/dist/state/report-session-state.js +43 -4
- package/dist/state/report-versions.d.ts +16 -11
- package/dist/state/report-versions.js +5 -3
- package/dist/state/runs.d.ts +70 -25
- package/dist/state/runs.js +127 -64
- package/dist/state/schema.d.ts +18 -21
- package/dist/state/schema.js +4 -5
- package/dist/state/snapshot-parse.d.ts +2 -2
- package/dist/state/snapshot-parse.js +14 -8
- package/dist/state/step-executions.d.ts +29 -8
- package/dist/state/step-executions.js +28 -4
- package/dist/state/tool-outputs.d.ts +2 -2
- package/dist/state/tool-outputs.js +2 -1
- package/dist/state/vector-store.d.ts +16 -16
- package/dist/state/vector-store.js +11 -7
- package/dist/tasks/data-profile-absorb.d.ts +3 -3
- package/dist/tasks/data-profile-absorb.js +21 -16
- package/dist/tasks/data-profile-activity.d.ts +5 -5
- package/dist/tasks/data-profile-activity.js +5 -5
- package/dist/tasks/data-profile-index.d.ts +4 -4
- package/dist/tasks/data-profile-index.js +32 -17
- package/dist/tasks/data-profile-resolve.d.ts +8 -8
- package/dist/tasks/data-profile-resolve.js +88 -62
- package/dist/tasks/data-profile.d.ts +40 -31
- package/dist/tasks/data-profile.js +138 -95
- package/dist/tasks/extract-values.d.ts +26 -79
- package/dist/tasks/extract-values.js +48 -108
- package/dist/tasks/refresh-regulatory-corpus.d.ts +4 -20
- package/dist/tasks/refresh-regulatory-corpus.js +12 -8
- package/dist/tasks/regulatory-corpus-boot-refresh.d.ts +2 -2
- package/dist/tasks/regulatory-corpus-boot-refresh.js +12 -10
- package/dist/testing.d.ts +60 -0
- package/dist/testing.js +96 -0
- package/dist/tools/ad-hoc-router.d.ts +11 -9
- package/dist/tools/ad-hoc-router.js +80 -51
- package/dist/tools/analysis-invocation.d.ts +7 -0
- package/dist/tools/analysis-invocation.js +29 -5
- package/dist/tools/approval/contract.d.ts +8 -52
- package/dist/tools/approval/contract.js +7 -36
- package/dist/tools/approval/gateway.d.ts +27 -28
- package/dist/tools/approval/gateway.js +33 -130
- package/dist/tools/approval/queries.d.ts +6 -11
- package/dist/tools/approval/queries.js +43 -29
- package/dist/tools/approval/uuidv7.js +2 -2
- package/dist/tools/bio/chembl.d.ts +3 -3
- package/dist/tools/bio/chembl.js +10 -0
- package/dist/tools/bio/comptox.d.ts +25 -8
- package/dist/tools/bio/comptox.js +4 -2
- package/dist/tools/bio/drug-gene-interactions.d.ts +27 -17
- package/dist/tools/bio/drug-gene-interactions.js +11 -8
- package/dist/tools/bio/gene-disease-evidence.d.ts +61 -15
- package/dist/tools/bio/gene-disease-evidence.js +10 -6
- package/dist/tools/bio/gene-preclinical-profile.d.ts +11 -11
- package/dist/tools/bio/keys.d.ts +2 -2
- package/dist/tools/bio/keys.js +3 -3
- package/dist/tools/bio/lookup-annotation.d.ts +5 -5
- package/dist/tools/bio/lookup-annotation.js +3 -0
- package/dist/tools/bio/opentargets.d.ts +1 -1
- package/dist/tools/bio/opentargets.js +6 -0
- package/dist/tools/bio/pubchem.d.ts +2 -2
- package/dist/tools/bio/pubchem.js +6 -0
- package/dist/tools/bio/pubmed.d.ts +26 -16
- package/dist/tools/bio/pubmed.js +9 -3
- package/dist/tools/bio/search-clinical-trials.d.ts +4 -4
- package/dist/tools/bio/search-clinical-trials.js +5 -1
- package/dist/tools/bio/search-faers.d.ts +2 -2
- package/dist/tools/bio/search-faers.js +1 -1
- package/dist/tools/bio/search-gene.d.ts +2 -2
- package/dist/tools/bio/search-gene.js +1 -0
- package/dist/tools/bio/search-geo-datasets.d.ts +4 -4
- package/dist/tools/bio/search-geo-datasets.js +5 -5
- package/dist/tools/bio/search-interactions.d.ts +1 -1
- package/dist/tools/bio/search-patents.d.ts +28 -22
- package/dist/tools/bio/search-patents.js +20 -17
- package/dist/tools/bio/search-protein.d.ts +2 -2
- package/dist/tools/bio/search-protein.js +1 -1
- package/dist/tools/bio/search-regulatory-approvals.d.ts +64 -18
- package/dist/tools/bio/search-regulatory-approvals.js +21 -16
- package/dist/tools/bio/target-safety.d.ts +8 -8
- package/dist/tools/bio/target-safety.js +11 -6
- package/dist/tools/capability-data.d.ts +40 -0
- package/dist/tools/capability-data.js +74 -0
- package/dist/tools/define-tool.d.ts +55 -46
- package/dist/tools/define-tool.js +39 -27
- package/dist/tools/display/normalize-echart-spec.d.ts +2 -2
- package/dist/tools/display/normalize-echart-spec.js +51 -27
- package/dist/tools/display/show-user.d.ts +2 -2
- package/dist/tools/display/show-user.js +1 -1
- package/dist/tools/execute-analysis.d.ts +54 -17
- package/dist/tools/execute-analysis.js +193 -62
- package/dist/tools/knowledge/check.d.ts +182 -0
- package/dist/tools/knowledge/check.js +94 -0
- package/dist/tools/knowledge/client.d.ts +351 -0
- package/dist/tools/knowledge/client.js +319 -0
- package/dist/tools/knowledge/environment.d.ts +78 -0
- package/dist/tools/knowledge/environment.js +116 -0
- package/dist/tools/knowledge/index.d.ts +49 -0
- package/dist/tools/knowledge/index.js +70 -0
- package/dist/tools/knowledge/local-slots.d.ts +62 -0
- package/dist/tools/knowledge/local-slots.js +184 -0
- package/dist/tools/knowledge/pin.d.ts +14 -0
- package/dist/tools/knowledge/pin.js +17 -0
- package/dist/tools/knowledge/recommend.d.ts +67 -0
- package/dist/tools/knowledge/recommend.js +106 -0
- package/dist/tools/knowledge/situation.d.ts +143 -0
- package/dist/tools/knowledge/situation.js +157 -0
- package/dist/tools/knowledge/skeleton.d.ts +69 -0
- package/dist/tools/knowledge/skeleton.js +201 -0
- package/dist/tools/knowledge/template.d.ts +139 -0
- package/dist/tools/knowledge/template.js +273 -0
- package/dist/tools/lib/alphafold-client.js +2 -1
- package/dist/tools/lib/amass-client.d.ts +28 -28
- package/dist/tools/lib/amass-client.js +20 -10
- package/dist/tools/lib/api-utils.d.ts +13 -3
- package/dist/tools/lib/api-utils.js +17 -3
- package/dist/tools/lib/bgee-client.d.ts +6 -6
- package/dist/tools/lib/bgee-client.js +16 -10
- package/dist/tools/lib/cbioportal-client.d.ts +4 -4
- package/dist/tools/lib/cbioportal-client.js +9 -8
- package/dist/tools/lib/chembl-client.d.ts +14 -14
- package/dist/tools/lib/chembl-client.js +11 -4
- package/dist/tools/lib/clinical-benchmarks-client.d.ts +4 -4
- package/dist/tools/lib/clinical-benchmarks-client.js +4 -7
- package/dist/tools/lib/clinical-trials-client.d.ts +18 -18
- package/dist/tools/lib/clinical-trials-client.js +10 -10
- package/dist/tools/lib/clinvar-client.d.ts +2 -2
- package/dist/tools/lib/clinvar-client.js +6 -6
- package/dist/tools/lib/ctx-ops.d.ts +23 -23
- package/dist/tools/lib/ctx-ops.js +13 -10
- package/dist/tools/lib/dgidb-client.d.ts +6 -6
- package/dist/tools/lib/dgidb-client.js +10 -12
- package/dist/tools/lib/disgenet-client.d.ts +4 -4
- package/dist/tools/lib/ema-client.d.ts +2 -2
- package/dist/tools/lib/ensembl-client.d.ts +4 -4
- package/dist/tools/lib/ensembl-client.js +5 -4
- package/dist/tools/lib/gwas-catalog-client.d.ts +4 -4
- package/dist/tools/lib/gwas-catalog-client.js +17 -17
- package/dist/tools/lib/html-text.d.ts +6 -0
- package/dist/tools/lib/html-text.js +9 -0
- package/dist/tools/lib/identifier-resolver.d.ts +4 -4
- package/dist/tools/lib/identifier-resolver.js +7 -3
- package/dist/tools/lib/impc-client.d.ts +8 -8
- package/dist/tools/lib/impc-client.js +46 -35
- package/dist/tools/lib/iuphar-client.d.ts +2 -2
- package/dist/tools/lib/iuphar-client.js +7 -16
- package/dist/tools/lib/monarch-client.d.ts +4 -4
- package/dist/tools/lib/openfda-client.d.ts +22 -22
- package/dist/tools/lib/openfda-client.js +23 -22
- package/dist/tools/lib/opentargets-client.d.ts +12 -12
- package/dist/tools/lib/pathway-client.d.ts +4 -4
- package/dist/tools/lib/pathway-client.js +15 -19
- package/dist/tools/lib/pharmgkb-client.d.ts +2 -2
- package/dist/tools/lib/pharmgkb-client.js +1 -1
- package/dist/tools/lib/protein-family-modality.d.ts +2 -2
- package/dist/tools/lib/protein-family-modality.js +0 -2
- package/dist/tools/lib/protein-family-normalize.js +7 -0
- package/dist/tools/lib/pubchem-client.d.ts +2 -2
- package/dist/tools/lib/pubchem-client.js +1 -0
- package/dist/tools/lib/pubchem-ops.d.ts +4 -4
- package/dist/tools/lib/pubchem-ops.js +8 -0
- package/dist/tools/lib/pubmed-client.d.ts +9 -9
- package/dist/tools/lib/pubmed-client.js +1 -1
- package/dist/tools/lib/string-client.d.ts +6 -6
- package/dist/tools/lib/uniprot-client.d.ts +8 -8
- package/dist/tools/lib/uniprot-client.js +5 -1
- package/dist/tools/memory/update-working-memory.d.ts +16 -13
- package/dist/tools/memory/update-working-memory.js +21 -3
- package/dist/tools/read-tool-output.js +8 -2
- package/dist/tools/registry.d.ts +2 -2
- package/dist/tools/report-authoring/authoring-tools.d.ts +54 -23
- package/dist/tools/report-authoring/authoring-tools.js +128 -62
- package/dist/tools/report-session/derive-table.d.ts +19 -59
- package/dist/tools/report-session/derive-table.js +120 -122
- package/dist/tools/report-session/examine-page.d.ts +6 -6
- package/dist/tools/report-session/examine-page.js +14 -12
- package/dist/tools/report-session/list-artifacts.d.ts +6 -6
- package/dist/tools/report-session/list-artifacts.js +5 -5
- package/dist/tools/report-session/page-faults.d.ts +6 -6
- package/dist/tools/report-session/page-faults.js +3 -1
- package/dist/tools/report-session/preview-report.d.ts +4 -3
- package/dist/tools/report-session/preview-report.js +26 -7
- package/dist/tools/report-session/record-version.d.ts +9 -4
- package/dist/tools/report-session/record-version.js +16 -9
- package/dist/tools/report-session/session-page-publisher.d.ts +6 -6
- package/dist/tools/research/generate-analogy-report.d.ts +14 -7
- package/dist/tools/research/generate-analogy-report.js +80 -76
- package/dist/tools/research/generate-plan.d.ts +39 -16
- package/dist/tools/research/generate-plan.js +565 -338
- package/dist/tools/research/guarded-address.d.ts +20 -0
- package/dist/tools/research/guarded-address.js +149 -0
- package/dist/tools/research/inspect-data-profile.d.ts +27 -20
- package/dist/tools/research/inspect-data-profile.js +26 -25
- package/dist/tools/research/inspect-run.d.ts +54 -27
- package/dist/tools/research/inspect-run.js +50 -40
- package/dist/tools/research/literature-reviewer.d.ts +8 -7
- package/dist/tools/research/literature-reviewer.js +29 -28
- package/dist/tools/research/search-arxiv.d.ts +1 -1
- package/dist/tools/research/search-arxiv.js +1 -1
- package/dist/tools/research/search-github-repos.d.ts +10 -7
- package/dist/tools/research/search-github-repos.js +25 -22
- package/dist/tools/research/search-semantic-scholar.js +1 -1
- package/dist/tools/research/searxng-engine.d.ts +40 -0
- package/dist/tools/research/searxng-engine.js +122 -0
- package/dist/tools/research/web-fetch.d.ts +127 -0
- package/dist/tools/research/web-fetch.js +618 -0
- package/dist/tools/research/web-search.d.ts +84 -0
- package/dist/tools/research/web-search.js +117 -0
- package/dist/tools/sandbox/link-packages.d.ts +11 -7
- package/dist/tools/sandbox/link-packages.js +11 -8
- package/dist/tools/sandbox/list-available-packages.d.ts +24 -12
- package/dist/tools/sandbox/list-available-packages.js +43 -29
- package/dist/tools/sandbox/list-available-refs.d.ts +38 -14
- package/dist/tools/sandbox/list-available-refs.js +119 -37
- package/dist/tools/sandbox/report-blocker.d.ts +30 -37
- package/dist/tools/sandbox/report-blocker.js +22 -68
- package/dist/tools/sandbox/skills.d.ts +16 -12
- package/dist/tools/sandbox/skills.js +16 -12
- package/dist/tools/sandbox/submit-file-metadata.d.ts +12 -9
- package/dist/tools/sandbox/submit-file-metadata.js +18 -21
- package/dist/tools/start-report-session.d.ts +13 -5
- package/dist/tools/start-report-session.js +35 -8
- package/dist/tools/terminal-text.d.ts +14 -0
- package/dist/tools/terminal-text.js +51 -0
- package/dist/tools/workspace/decision-record.d.ts +81 -0
- package/dist/tools/workspace/decision-record.js +127 -0
- package/dist/tools/workspace/edit-file.d.ts +59 -18
- package/dist/tools/workspace/edit-file.js +98 -15
- package/dist/tools/workspace/execute-command.d.ts +31 -12
- package/dist/tools/workspace/execute-command.js +37 -8
- package/dist/tools/workspace/file-stat.d.ts +6 -3
- package/dist/tools/workspace/grep.d.ts +10 -7
- package/dist/tools/workspace/grep.js +9 -3
- package/dist/tools/workspace/index.d.ts +1 -0
- package/dist/tools/workspace/index.js +1 -0
- package/dist/tools/workspace/list-files.d.ts +6 -3
- package/dist/tools/workspace/mutator.d.ts +28 -15
- package/dist/tools/workspace/mutator.js +107 -53
- package/dist/tools/workspace/read-file.d.ts +8 -5
- package/dist/tools/workspace/result-bounds.d.ts +5 -5
- package/dist/tools/workspace/result-bounds.js +4 -2
- package/dist/tools/workspace/run-exec.d.ts +2 -2
- package/dist/tools/workspace/run-exec.js +3 -3
- package/dist/tools/workspace/scan-inputs.d.ts +8 -5
- package/dist/tools/workspace/scan-inputs.js +17 -5
- package/dist/tools/workspace/show-file.d.ts +1 -1
- package/dist/tools/workspace/show-file.js +2 -1
- package/dist/tools/workspace/show-plan.d.ts +8 -5
- package/dist/tools/workspace/show-plan.js +9 -8
- package/dist/tools/workspace/workspace-search.d.ts +41 -13
- package/dist/tools/workspace/workspace-search.js +27 -14
- package/dist/tools/workspace/write-file.d.ts +9 -7
- package/dist/workflows/execute-analysis-scheduler.d.ts +9 -9
- package/dist/workflows/execute-analysis-scheduler.js +6 -3
- package/dist/workflows/execute-analysis.d.ts +100 -76
- package/dist/workflows/execute-analysis.js +380 -247
- package/dist/workflows/pause.d.ts +71 -0
- package/dist/workflows/pause.js +173 -0
- package/dist/workflows/sandbox-step.d.ts +50 -61
- package/dist/workflows/sandbox-step.js +99 -106
- package/dist/workflows/test/sql-writes.d.ts +21 -0
- package/dist/workflows/test/sql-writes.js +36 -0
- package/dist/workspace/filesystem.d.ts +6 -6
- package/dist/workspace/filesystem.js +10 -8
- package/dist/workspace/paths.d.ts +1 -1
- package/dist/workspace/paths.js +15 -4
- package/dist/workspace/search-config.d.ts +2 -2
- package/dist/workspace/search-config.js +1 -1
- package/package.json +25 -22
- package/dist/loop/continue-agent.d.ts +0 -40
- package/dist/loop/continue-agent.js +0 -38
- package/dist/loop/genai-spans.d.ts +0 -47
- package/dist/loop/genai-spans.js +0 -134
- package/dist/loop/run-agent.d.ts +0 -236
- package/dist/loop/run-agent.js +0 -1110
- package/dist/loop/run-step.d.ts +0 -29
- package/dist/loop/run-step.js +0 -34
- package/dist/loop/run-to-terminal.d.ts +0 -66
- package/dist/loop/run-to-terminal.js +0 -90
- package/dist/loop/tool-mask.d.ts +0 -23
- package/dist/loop/tool-mask.js +0 -46
- package/dist/providers/streaming-chat.d.ts +0 -32
- package/dist/providers/streaming-chat.js +0 -91
- package/dist/tasks/derive-table-exec.d.ts +0 -54
- package/dist/tasks/derive-table-exec.js +0 -86
- package/dist/workflows/suspension.d.ts +0 -32
- package/dist/workflows/suspension.js +0 -38
|
@@ -14,6 +14,32 @@
|
|
|
14
14
|
* payload, thus the grounding and the resolution read the same pin as before.
|
|
15
15
|
*/
|
|
16
16
|
import { z } from "zod";
|
|
17
|
+
/** A reference to a whole table artifact, by the path of the artifact. */
|
|
18
|
+
declare const AuthoringTableReferenceSchema: z.ZodObject<{
|
|
19
|
+
run: z.ZodOptional<z.ZodString>;
|
|
20
|
+
path: z.ZodString;
|
|
21
|
+
snapshot: z.ZodOptional<z.ZodString>;
|
|
22
|
+
unit: z.ZodOptional<z.ZodString>;
|
|
23
|
+
format: z.ZodOptional<z.ZodString>;
|
|
24
|
+
kind: z.ZodLiteral<"artifact-table">;
|
|
25
|
+
rowBound: z.ZodOptional<z.ZodObject<{
|
|
26
|
+
column: z.ZodString;
|
|
27
|
+
count: z.ZodNumber;
|
|
28
|
+
order: z.ZodOptional<z.ZodEnum<{
|
|
29
|
+
asc: "asc";
|
|
30
|
+
desc: "desc";
|
|
31
|
+
}>>;
|
|
32
|
+
}, z.core.$strict>>;
|
|
33
|
+
columns: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
34
|
+
columnMeanings: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodEnum<{
|
|
35
|
+
category: "category";
|
|
36
|
+
count: "count";
|
|
37
|
+
effect: "effect";
|
|
38
|
+
identifier: "identifier";
|
|
39
|
+
"p-value": "p-value";
|
|
40
|
+
}>>>;
|
|
41
|
+
columnLabels: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodString>>;
|
|
42
|
+
}, z.core.$strict>;
|
|
17
43
|
/**
|
|
18
44
|
* The seven atoms of the authoring surface.
|
|
19
45
|
*
|
|
@@ -37,10 +63,12 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
37
63
|
prose: z.ZodString;
|
|
38
64
|
}, z.core.$strict>;
|
|
39
65
|
bindings: z.ZodArray<z.ZodDiscriminatedUnion<[z.ZodObject<{
|
|
40
|
-
|
|
41
|
-
kind: z.ZodLiteral<"artifact-value">;
|
|
66
|
+
run: z.ZodOptional<z.ZodString>;
|
|
42
67
|
path: z.ZodString;
|
|
68
|
+
snapshot: z.ZodOptional<z.ZodString>;
|
|
43
69
|
unit: z.ZodOptional<z.ZodString>;
|
|
70
|
+
format: z.ZodOptional<z.ZodString>;
|
|
71
|
+
kind: z.ZodLiteral<"artifact-value">;
|
|
44
72
|
locator: z.ZodObject<{
|
|
45
73
|
column: z.ZodString;
|
|
46
74
|
rowFilter: z.ZodOptional<z.ZodObject<{
|
|
@@ -54,13 +82,13 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
54
82
|
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
55
83
|
tolerance: z.ZodOptional<z.ZodNumber>;
|
|
56
84
|
}, z.core.$strict>>;
|
|
85
|
+
}, z.core.$strict>, z.ZodObject<{
|
|
57
86
|
run: z.ZodOptional<z.ZodString>;
|
|
87
|
+
path: z.ZodString;
|
|
58
88
|
snapshot: z.ZodOptional<z.ZodString>;
|
|
59
|
-
|
|
89
|
+
unit: z.ZodOptional<z.ZodString>;
|
|
60
90
|
format: z.ZodOptional<z.ZodString>;
|
|
61
91
|
kind: z.ZodLiteral<"artifact-table">;
|
|
62
|
-
path: z.ZodString;
|
|
63
|
-
unit: z.ZodOptional<z.ZodString>;
|
|
64
92
|
rowBound: z.ZodOptional<z.ZodObject<{
|
|
65
93
|
column: z.ZodString;
|
|
66
94
|
count: z.ZodNumber;
|
|
@@ -71,40 +99,40 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
71
99
|
}, z.core.$strict>>;
|
|
72
100
|
columns: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
73
101
|
columnMeanings: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodEnum<{
|
|
102
|
+
category: "category";
|
|
74
103
|
count: "count";
|
|
104
|
+
effect: "effect";
|
|
75
105
|
identifier: "identifier";
|
|
76
|
-
category: "category";
|
|
77
106
|
"p-value": "p-value";
|
|
78
|
-
effect: "effect";
|
|
79
107
|
}>>>;
|
|
80
108
|
columnLabels: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodString>>;
|
|
109
|
+
}, z.core.$strict>, z.ZodObject<{
|
|
81
110
|
run: z.ZodOptional<z.ZodString>;
|
|
111
|
+
path: z.ZodString;
|
|
82
112
|
snapshot: z.ZodOptional<z.ZodString>;
|
|
83
|
-
|
|
113
|
+
unit: z.ZodOptional<z.ZodString>;
|
|
84
114
|
format: z.ZodOptional<z.ZodString>;
|
|
85
115
|
kind: z.ZodLiteral<"artifact-file">;
|
|
86
|
-
path: z.ZodString;
|
|
87
|
-
unit: z.ZodOptional<z.ZodString>;
|
|
88
|
-
run: z.ZodOptional<z.ZodString>;
|
|
89
|
-
snapshot: z.ZodOptional<z.ZodString>;
|
|
90
116
|
}, z.core.$strict>, z.ZodObject<{
|
|
91
117
|
unit: z.ZodOptional<z.ZodString>;
|
|
92
118
|
format: z.ZodOptional<z.ZodString>;
|
|
93
119
|
kind: z.ZodLiteral<"derivation">;
|
|
94
120
|
op: z.ZodEnum<{
|
|
95
|
-
ratio: "ratio";
|
|
96
121
|
delta: "delta";
|
|
97
122
|
pctChange: "pctChange";
|
|
123
|
+
ratio: "ratio";
|
|
98
124
|
}>;
|
|
99
125
|
assert: z.ZodOptional<z.ZodObject<{
|
|
100
126
|
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
101
127
|
tolerance: z.ZodOptional<z.ZodNumber>;
|
|
102
128
|
}, z.core.$strict>>;
|
|
103
129
|
inputs: z.ZodArray<z.ZodObject<{
|
|
104
|
-
|
|
105
|
-
kind: z.ZodLiteral<"artifact-value">;
|
|
130
|
+
run: z.ZodOptional<z.ZodString>;
|
|
106
131
|
path: z.ZodString;
|
|
132
|
+
snapshot: z.ZodOptional<z.ZodString>;
|
|
107
133
|
unit: z.ZodOptional<z.ZodString>;
|
|
134
|
+
format: z.ZodOptional<z.ZodString>;
|
|
135
|
+
kind: z.ZodLiteral<"artifact-value">;
|
|
108
136
|
locator: z.ZodObject<{
|
|
109
137
|
column: z.ZodString;
|
|
110
138
|
rowFilter: z.ZodOptional<z.ZodObject<{
|
|
@@ -118,17 +146,15 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
118
146
|
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
119
147
|
tolerance: z.ZodOptional<z.ZodNumber>;
|
|
120
148
|
}, z.core.$strict>>;
|
|
121
|
-
run: z.ZodOptional<z.ZodString>;
|
|
122
|
-
snapshot: z.ZodOptional<z.ZodString>;
|
|
123
149
|
}, z.core.$strict>>;
|
|
124
150
|
}, z.core.$strict>, z.ZodObject<{
|
|
125
151
|
unit: z.ZodOptional<z.ZodString>;
|
|
126
152
|
format: z.ZodOptional<z.ZodString>;
|
|
127
153
|
kind: z.ZodLiteral<"citation">;
|
|
128
154
|
idKind: z.ZodEnum<{
|
|
155
|
+
arxiv: "arxiv";
|
|
129
156
|
doi: "doi";
|
|
130
157
|
pmid: "pmid";
|
|
131
|
-
arxiv: "arxiv";
|
|
132
158
|
}>;
|
|
133
159
|
id: z.ZodString;
|
|
134
160
|
raw: z.ZodString;
|
|
@@ -141,10 +167,12 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
141
167
|
id: z.ZodString;
|
|
142
168
|
label: z.ZodString;
|
|
143
169
|
value: z.ZodDiscriminatedUnion<[z.ZodObject<{
|
|
144
|
-
|
|
145
|
-
kind: z.ZodLiteral<"artifact-value">;
|
|
170
|
+
run: z.ZodOptional<z.ZodString>;
|
|
146
171
|
path: z.ZodString;
|
|
172
|
+
snapshot: z.ZodOptional<z.ZodString>;
|
|
147
173
|
unit: z.ZodOptional<z.ZodString>;
|
|
174
|
+
format: z.ZodOptional<z.ZodString>;
|
|
175
|
+
kind: z.ZodLiteral<"artifact-value">;
|
|
148
176
|
locator: z.ZodObject<{
|
|
149
177
|
column: z.ZodString;
|
|
150
178
|
rowFilter: z.ZodOptional<z.ZodObject<{
|
|
@@ -158,26 +186,26 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
158
186
|
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
159
187
|
tolerance: z.ZodOptional<z.ZodNumber>;
|
|
160
188
|
}, z.core.$strict>>;
|
|
161
|
-
run: z.ZodOptional<z.ZodString>;
|
|
162
|
-
snapshot: z.ZodOptional<z.ZodString>;
|
|
163
189
|
}, z.core.$strict>, z.ZodObject<{
|
|
164
190
|
unit: z.ZodOptional<z.ZodString>;
|
|
165
191
|
format: z.ZodOptional<z.ZodString>;
|
|
166
192
|
kind: z.ZodLiteral<"derivation">;
|
|
167
193
|
op: z.ZodEnum<{
|
|
168
|
-
ratio: "ratio";
|
|
169
194
|
delta: "delta";
|
|
170
195
|
pctChange: "pctChange";
|
|
196
|
+
ratio: "ratio";
|
|
171
197
|
}>;
|
|
172
198
|
assert: z.ZodOptional<z.ZodObject<{
|
|
173
199
|
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
174
200
|
tolerance: z.ZodOptional<z.ZodNumber>;
|
|
175
201
|
}, z.core.$strict>>;
|
|
176
202
|
inputs: z.ZodArray<z.ZodObject<{
|
|
177
|
-
|
|
178
|
-
kind: z.ZodLiteral<"artifact-value">;
|
|
203
|
+
run: z.ZodOptional<z.ZodString>;
|
|
179
204
|
path: z.ZodString;
|
|
205
|
+
snapshot: z.ZodOptional<z.ZodString>;
|
|
180
206
|
unit: z.ZodOptional<z.ZodString>;
|
|
207
|
+
format: z.ZodOptional<z.ZodString>;
|
|
208
|
+
kind: z.ZodLiteral<"artifact-value">;
|
|
181
209
|
locator: z.ZodObject<{
|
|
182
210
|
column: z.ZodString;
|
|
183
211
|
rowFilter: z.ZodOptional<z.ZodObject<{
|
|
@@ -191,8 +219,6 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
191
219
|
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
192
220
|
tolerance: z.ZodOptional<z.ZodNumber>;
|
|
193
221
|
}, z.core.$strict>>;
|
|
194
|
-
run: z.ZodOptional<z.ZodString>;
|
|
195
|
-
snapshot: z.ZodOptional<z.ZodString>;
|
|
196
222
|
}, z.core.$strict>>;
|
|
197
223
|
}, z.core.$strict>], "kind">;
|
|
198
224
|
}, z.core.$strict>, z.ZodObject<{
|
|
@@ -201,36 +227,12 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
201
227
|
title: z.ZodOptional<z.ZodString>;
|
|
202
228
|
caption: z.ZodOptional<z.ZodString>;
|
|
203
229
|
binding: z.ZodObject<{
|
|
204
|
-
format: z.ZodOptional<z.ZodString>;
|
|
205
|
-
kind: z.ZodLiteral<"artifact-table">;
|
|
206
|
-
path: z.ZodString;
|
|
207
|
-
unit: z.ZodOptional<z.ZodString>;
|
|
208
|
-
rowBound: z.ZodOptional<z.ZodObject<{
|
|
209
|
-
column: z.ZodString;
|
|
210
|
-
count: z.ZodNumber;
|
|
211
|
-
order: z.ZodOptional<z.ZodEnum<{
|
|
212
|
-
asc: "asc";
|
|
213
|
-
desc: "desc";
|
|
214
|
-
}>>;
|
|
215
|
-
}, z.core.$strict>>;
|
|
216
|
-
columns: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
217
|
-
columnMeanings: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodEnum<{
|
|
218
|
-
count: "count";
|
|
219
|
-
identifier: "identifier";
|
|
220
|
-
category: "category";
|
|
221
|
-
"p-value": "p-value";
|
|
222
|
-
effect: "effect";
|
|
223
|
-
}>>>;
|
|
224
|
-
columnLabels: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodString>>;
|
|
225
230
|
run: z.ZodOptional<z.ZodString>;
|
|
231
|
+
path: z.ZodString;
|
|
226
232
|
snapshot: z.ZodOptional<z.ZodString>;
|
|
227
|
-
|
|
228
|
-
}, z.core.$strict>, z.ZodObject<{
|
|
229
|
-
binding: z.ZodObject<{
|
|
233
|
+
unit: z.ZodOptional<z.ZodString>;
|
|
230
234
|
format: z.ZodOptional<z.ZodString>;
|
|
231
235
|
kind: z.ZodLiteral<"artifact-table">;
|
|
232
|
-
path: z.ZodString;
|
|
233
|
-
unit: z.ZodOptional<z.ZodString>;
|
|
234
236
|
rowBound: z.ZodOptional<z.ZodObject<{
|
|
235
237
|
column: z.ZodString;
|
|
236
238
|
count: z.ZodNumber;
|
|
@@ -241,172 +243,54 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
241
243
|
}, z.core.$strict>>;
|
|
242
244
|
columns: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
243
245
|
columnMeanings: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodEnum<{
|
|
246
|
+
category: "category";
|
|
244
247
|
count: "count";
|
|
248
|
+
effect: "effect";
|
|
245
249
|
identifier: "identifier";
|
|
246
|
-
category: "category";
|
|
247
250
|
"p-value": "p-value";
|
|
248
|
-
effect: "effect";
|
|
249
251
|
}>>>;
|
|
250
252
|
columnLabels: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodString>>;
|
|
251
|
-
run: z.ZodOptional<z.ZodString>;
|
|
252
|
-
snapshot: z.ZodOptional<z.ZodString>;
|
|
253
253
|
}, z.core.$strict>;
|
|
254
|
-
|
|
255
|
-
label: z.ZodString;
|
|
256
|
-
value: z.ZodObject<{
|
|
257
|
-
format: z.ZodOptional<z.ZodString>;
|
|
258
|
-
kind: z.ZodLiteral<"artifact-value">;
|
|
259
|
-
path: z.ZodString;
|
|
260
|
-
unit: z.ZodOptional<z.ZodString>;
|
|
261
|
-
locator: z.ZodObject<{
|
|
262
|
-
column: z.ZodString;
|
|
263
|
-
rowFilter: z.ZodOptional<z.ZodObject<{
|
|
264
|
-
column: z.ZodString;
|
|
265
|
-
op: z.ZodLiteral<"eq">;
|
|
266
|
-
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
267
|
-
}, z.core.$strict>>;
|
|
268
|
-
row: z.ZodOptional<z.ZodNumber>;
|
|
269
|
-
}, z.core.$strict>;
|
|
270
|
-
assert: z.ZodOptional<z.ZodObject<{
|
|
271
|
-
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
272
|
-
tolerance: z.ZodOptional<z.ZodNumber>;
|
|
273
|
-
}, z.core.$strict>>;
|
|
274
|
-
run: z.ZodOptional<z.ZodString>;
|
|
275
|
-
snapshot: z.ZodOptional<z.ZodString>;
|
|
276
|
-
}, z.core.$strict>;
|
|
277
|
-
}, z.core.$strict>>>;
|
|
278
|
-
track: z.ZodOptional<z.ZodObject<{
|
|
279
|
-
start: z.ZodString;
|
|
280
|
-
end: z.ZodString;
|
|
281
|
-
label: z.ZodString;
|
|
282
|
-
length: z.ZodOptional<z.ZodString>;
|
|
283
|
-
binding: z.ZodObject<{
|
|
284
|
-
format: z.ZodOptional<z.ZodString>;
|
|
285
|
-
kind: z.ZodLiteral<"artifact-table">;
|
|
286
|
-
path: z.ZodString;
|
|
287
|
-
unit: z.ZodOptional<z.ZodString>;
|
|
288
|
-
rowBound: z.ZodOptional<z.ZodObject<{
|
|
289
|
-
column: z.ZodString;
|
|
290
|
-
count: z.ZodNumber;
|
|
291
|
-
order: z.ZodOptional<z.ZodEnum<{
|
|
292
|
-
asc: "asc";
|
|
293
|
-
desc: "desc";
|
|
294
|
-
}>>;
|
|
295
|
-
}, z.core.$strict>>;
|
|
296
|
-
columns: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
297
|
-
columnMeanings: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodEnum<{
|
|
298
|
-
count: "count";
|
|
299
|
-
identifier: "identifier";
|
|
300
|
-
category: "category";
|
|
301
|
-
"p-value": "p-value";
|
|
302
|
-
effect: "effect";
|
|
303
|
-
}>>>;
|
|
304
|
-
columnLabels: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodString>>;
|
|
305
|
-
run: z.ZodOptional<z.ZodString>;
|
|
306
|
-
snapshot: z.ZodOptional<z.ZodString>;
|
|
307
|
-
}, z.core.$strict>;
|
|
308
|
-
}, z.core.$strict>>;
|
|
309
|
-
trees: z.ZodOptional<z.ZodObject<{
|
|
310
|
-
x: z.ZodOptional<z.ZodObject<{
|
|
311
|
-
parent: z.ZodString;
|
|
312
|
-
child: z.ZodString;
|
|
313
|
-
height: z.ZodString;
|
|
314
|
-
binding: z.ZodObject<{
|
|
315
|
-
format: z.ZodOptional<z.ZodString>;
|
|
316
|
-
kind: z.ZodLiteral<"artifact-table">;
|
|
317
|
-
path: z.ZodString;
|
|
318
|
-
unit: z.ZodOptional<z.ZodString>;
|
|
319
|
-
rowBound: z.ZodOptional<z.ZodObject<{
|
|
320
|
-
column: z.ZodString;
|
|
321
|
-
count: z.ZodNumber;
|
|
322
|
-
order: z.ZodOptional<z.ZodEnum<{
|
|
323
|
-
asc: "asc";
|
|
324
|
-
desc: "desc";
|
|
325
|
-
}>>;
|
|
326
|
-
}, z.core.$strict>>;
|
|
327
|
-
columns: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
328
|
-
columnMeanings: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodEnum<{
|
|
329
|
-
count: "count";
|
|
330
|
-
identifier: "identifier";
|
|
331
|
-
category: "category";
|
|
332
|
-
"p-value": "p-value";
|
|
333
|
-
effect: "effect";
|
|
334
|
-
}>>>;
|
|
335
|
-
columnLabels: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodString>>;
|
|
336
|
-
run: z.ZodOptional<z.ZodString>;
|
|
337
|
-
snapshot: z.ZodOptional<z.ZodString>;
|
|
338
|
-
}, z.core.$strict>;
|
|
339
|
-
}, z.core.$strict>>;
|
|
340
|
-
y: z.ZodOptional<z.ZodObject<{
|
|
341
|
-
parent: z.ZodString;
|
|
342
|
-
child: z.ZodString;
|
|
343
|
-
height: z.ZodString;
|
|
344
|
-
binding: z.ZodObject<{
|
|
345
|
-
format: z.ZodOptional<z.ZodString>;
|
|
346
|
-
kind: z.ZodLiteral<"artifact-table">;
|
|
347
|
-
path: z.ZodString;
|
|
348
|
-
unit: z.ZodOptional<z.ZodString>;
|
|
349
|
-
rowBound: z.ZodOptional<z.ZodObject<{
|
|
350
|
-
column: z.ZodString;
|
|
351
|
-
count: z.ZodNumber;
|
|
352
|
-
order: z.ZodOptional<z.ZodEnum<{
|
|
353
|
-
asc: "asc";
|
|
354
|
-
desc: "desc";
|
|
355
|
-
}>>;
|
|
356
|
-
}, z.core.$strict>>;
|
|
357
|
-
columns: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
358
|
-
columnMeanings: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodEnum<{
|
|
359
|
-
count: "count";
|
|
360
|
-
identifier: "identifier";
|
|
361
|
-
category: "category";
|
|
362
|
-
"p-value": "p-value";
|
|
363
|
-
effect: "effect";
|
|
364
|
-
}>>>;
|
|
365
|
-
columnLabels: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodString>>;
|
|
366
|
-
run: z.ZodOptional<z.ZodString>;
|
|
367
|
-
snapshot: z.ZodOptional<z.ZodString>;
|
|
368
|
-
}, z.core.$strict>;
|
|
369
|
-
}, z.core.$strict>>;
|
|
370
|
-
}, z.core.$strict>>;
|
|
254
|
+
}, z.core.$strict>, z.ZodObject<{
|
|
371
255
|
kind: z.ZodLiteral<"chart">;
|
|
372
256
|
id: z.ZodString;
|
|
373
257
|
title: z.ZodOptional<z.ZodString>;
|
|
374
258
|
chartType: z.ZodOptional<z.ZodEnum<{
|
|
375
259
|
bar: "bar";
|
|
376
|
-
line: "line";
|
|
377
|
-
scatter: "scatter";
|
|
378
|
-
histogram: "histogram";
|
|
379
260
|
box: "box";
|
|
380
|
-
heatmap: "heatmap";
|
|
381
|
-
pie: "pie";
|
|
382
|
-
violin: "violin";
|
|
383
|
-
"stacked-bar": "stacked-bar";
|
|
384
|
-
"normalized-bar": "normalized-bar";
|
|
385
|
-
radar: "radar";
|
|
386
|
-
volcano: "volcano";
|
|
387
|
-
manhattan: "manhattan";
|
|
388
|
-
ma: "ma";
|
|
389
|
-
km: "km";
|
|
390
|
-
pca: "pca";
|
|
391
|
-
embedding: "embedding";
|
|
392
261
|
dotplot: "dotplot";
|
|
262
|
+
embedding: "embedding";
|
|
393
263
|
forest: "forest";
|
|
394
|
-
roc: "roc";
|
|
395
|
-
qq: "qq";
|
|
396
264
|
gsea: "gsea";
|
|
397
|
-
|
|
265
|
+
heatmap: "heatmap";
|
|
266
|
+
histogram: "histogram";
|
|
267
|
+
km: "km";
|
|
268
|
+
line: "line";
|
|
269
|
+
locuszoom: "locuszoom";
|
|
398
270
|
lollipop: "lollipop";
|
|
399
|
-
|
|
271
|
+
ma: "ma";
|
|
272
|
+
manhattan: "manhattan";
|
|
273
|
+
"normalized-bar": "normalized-bar";
|
|
274
|
+
oncoprint: "oncoprint";
|
|
275
|
+
pca: "pca";
|
|
276
|
+
pie: "pie";
|
|
277
|
+
qq: "qq";
|
|
278
|
+
radar: "radar";
|
|
279
|
+
roc: "roc";
|
|
400
280
|
sankey: "sankey";
|
|
401
|
-
|
|
281
|
+
scatter: "scatter";
|
|
282
|
+
"stacked-bar": "stacked-bar";
|
|
283
|
+
upset: "upset";
|
|
284
|
+
violin: "violin";
|
|
285
|
+
volcano: "volcano";
|
|
402
286
|
}>>;
|
|
403
287
|
encoding: z.ZodOptional<z.ZodObject<{
|
|
404
288
|
x: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
405
289
|
column: z.ZodString;
|
|
406
290
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
291
|
+
abs: "abs";
|
|
407
292
|
log10: "log10";
|
|
408
293
|
neg_log10: "neg_log10";
|
|
409
|
-
abs: "abs";
|
|
410
294
|
rank: "rank";
|
|
411
295
|
}>>;
|
|
412
296
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -418,9 +302,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
418
302
|
y: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
419
303
|
column: z.ZodString;
|
|
420
304
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
305
|
+
abs: "abs";
|
|
421
306
|
log10: "log10";
|
|
422
307
|
neg_log10: "neg_log10";
|
|
423
|
-
abs: "abs";
|
|
424
308
|
rank: "rank";
|
|
425
309
|
}>>;
|
|
426
310
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -432,9 +316,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
432
316
|
group: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
433
317
|
column: z.ZodString;
|
|
434
318
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
319
|
+
abs: "abs";
|
|
435
320
|
log10: "log10";
|
|
436
321
|
neg_log10: "neg_log10";
|
|
437
|
-
abs: "abs";
|
|
438
322
|
rank: "rank";
|
|
439
323
|
}>>;
|
|
440
324
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -446,9 +330,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
446
330
|
value: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
447
331
|
column: z.ZodString;
|
|
448
332
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
333
|
+
abs: "abs";
|
|
449
334
|
log10: "log10";
|
|
450
335
|
neg_log10: "neg_log10";
|
|
451
|
-
abs: "abs";
|
|
452
336
|
rank: "rank";
|
|
453
337
|
}>>;
|
|
454
338
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -461,9 +345,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
461
345
|
color: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
462
346
|
column: z.ZodString;
|
|
463
347
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
348
|
+
abs: "abs";
|
|
464
349
|
log10: "log10";
|
|
465
350
|
neg_log10: "neg_log10";
|
|
466
|
-
abs: "abs";
|
|
467
351
|
rank: "rank";
|
|
468
352
|
}>>;
|
|
469
353
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -475,9 +359,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
475
359
|
size: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
476
360
|
column: z.ZodString;
|
|
477
361
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
362
|
+
abs: "abs";
|
|
478
363
|
log10: "log10";
|
|
479
364
|
neg_log10: "neg_log10";
|
|
480
|
-
abs: "abs";
|
|
481
365
|
rank: "rank";
|
|
482
366
|
}>>;
|
|
483
367
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -489,9 +373,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
489
373
|
low: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
490
374
|
column: z.ZodString;
|
|
491
375
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
376
|
+
abs: "abs";
|
|
492
377
|
log10: "log10";
|
|
493
378
|
neg_log10: "neg_log10";
|
|
494
|
-
abs: "abs";
|
|
495
379
|
rank: "rank";
|
|
496
380
|
}>>;
|
|
497
381
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -503,9 +387,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
503
387
|
high: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
504
388
|
column: z.ZodString;
|
|
505
389
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
390
|
+
abs: "abs";
|
|
506
391
|
log10: "log10";
|
|
507
392
|
neg_log10: "neg_log10";
|
|
508
|
-
abs: "abs";
|
|
509
393
|
rank: "rank";
|
|
510
394
|
}>>;
|
|
511
395
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -517,9 +401,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
517
401
|
facet: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
518
402
|
column: z.ZodString;
|
|
519
403
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
404
|
+
abs: "abs";
|
|
520
405
|
log10: "log10";
|
|
521
406
|
neg_log10: "neg_log10";
|
|
522
|
-
abs: "abs";
|
|
523
407
|
rank: "rank";
|
|
524
408
|
}>>;
|
|
525
409
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -531,9 +415,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
531
415
|
shape: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
532
416
|
column: z.ZodString;
|
|
533
417
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
418
|
+
abs: "abs";
|
|
534
419
|
log10: "log10";
|
|
535
420
|
neg_log10: "neg_log10";
|
|
536
|
-
abs: "abs";
|
|
537
421
|
rank: "rank";
|
|
538
422
|
}>>;
|
|
539
423
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -545,9 +429,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
545
429
|
p: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
546
430
|
column: z.ZodString;
|
|
547
431
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
432
|
+
abs: "abs";
|
|
548
433
|
log10: "log10";
|
|
549
434
|
neg_log10: "neg_log10";
|
|
550
|
-
abs: "abs";
|
|
551
435
|
rank: "rank";
|
|
552
436
|
}>>;
|
|
553
437
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -559,9 +443,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
559
443
|
censor: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
560
444
|
column: z.ZodString;
|
|
561
445
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
446
|
+
abs: "abs";
|
|
562
447
|
log10: "log10";
|
|
563
448
|
neg_log10: "neg_log10";
|
|
564
|
-
abs: "abs";
|
|
565
449
|
rank: "rank";
|
|
566
450
|
}>>;
|
|
567
451
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -573,9 +457,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
573
457
|
risk: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
574
458
|
column: z.ZodString;
|
|
575
459
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
460
|
+
abs: "abs";
|
|
576
461
|
log10: "log10";
|
|
577
462
|
neg_log10: "neg_log10";
|
|
578
|
-
abs: "abs";
|
|
579
463
|
rank: "rank";
|
|
580
464
|
}>>;
|
|
581
465
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -587,9 +471,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
587
471
|
hit: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
588
472
|
column: z.ZodString;
|
|
589
473
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
474
|
+
abs: "abs";
|
|
590
475
|
log10: "log10";
|
|
591
476
|
neg_log10: "neg_log10";
|
|
592
|
-
abs: "abs";
|
|
593
477
|
rank: "rank";
|
|
594
478
|
}>>;
|
|
595
479
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -601,9 +485,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
601
485
|
metric: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
602
486
|
column: z.ZodString;
|
|
603
487
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
488
|
+
abs: "abs";
|
|
604
489
|
log10: "log10";
|
|
605
490
|
neg_log10: "neg_log10";
|
|
606
|
-
abs: "abs";
|
|
607
491
|
rank: "rank";
|
|
608
492
|
}>>;
|
|
609
493
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -615,8 +499,8 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
615
499
|
tracks: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
616
500
|
}, z.core.$strict>>;
|
|
617
501
|
orientation: z.ZodOptional<z.ZodEnum<{
|
|
618
|
-
vertical: "vertical";
|
|
619
502
|
horizontal: "horizontal";
|
|
503
|
+
vertical: "vertical";
|
|
620
504
|
}>>;
|
|
621
505
|
thresholds: z.ZodOptional<z.ZodObject<{
|
|
622
506
|
significance: z.ZodNumber;
|
|
@@ -625,19 +509,19 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
625
509
|
composition: z.ZodOptional<z.ZodObject<{
|
|
626
510
|
series: z.ZodArray<z.ZodObject<{
|
|
627
511
|
form: z.ZodEnum<{
|
|
628
|
-
|
|
512
|
+
area: "area";
|
|
629
513
|
bar: "bar";
|
|
630
514
|
line: "line";
|
|
631
515
|
scatter: "scatter";
|
|
632
|
-
|
|
516
|
+
step: "step";
|
|
633
517
|
}>;
|
|
634
518
|
encoding: z.ZodObject<{
|
|
635
519
|
x: z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
636
520
|
column: z.ZodString;
|
|
637
521
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
522
|
+
abs: "abs";
|
|
638
523
|
log10: "log10";
|
|
639
524
|
neg_log10: "neg_log10";
|
|
640
|
-
abs: "abs";
|
|
641
525
|
rank: "rank";
|
|
642
526
|
}>>;
|
|
643
527
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -649,9 +533,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
649
533
|
y: z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
650
534
|
column: z.ZodString;
|
|
651
535
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
536
|
+
abs: "abs";
|
|
652
537
|
log10: "log10";
|
|
653
538
|
neg_log10: "neg_log10";
|
|
654
|
-
abs: "abs";
|
|
655
539
|
rank: "rank";
|
|
656
540
|
}>>;
|
|
657
541
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -663,9 +547,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
663
547
|
y0: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
664
548
|
column: z.ZodString;
|
|
665
549
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
550
|
+
abs: "abs";
|
|
666
551
|
log10: "log10";
|
|
667
552
|
neg_log10: "neg_log10";
|
|
668
|
-
abs: "abs";
|
|
669
553
|
rank: "rank";
|
|
670
554
|
}>>;
|
|
671
555
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -677,9 +561,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
677
561
|
group: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
678
562
|
column: z.ZodString;
|
|
679
563
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
564
|
+
abs: "abs";
|
|
680
565
|
log10: "log10";
|
|
681
566
|
neg_log10: "neg_log10";
|
|
682
|
-
abs: "abs";
|
|
683
567
|
rank: "rank";
|
|
684
568
|
}>>;
|
|
685
569
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -692,9 +576,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
692
576
|
color: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
693
577
|
column: z.ZodString;
|
|
694
578
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
579
|
+
abs: "abs";
|
|
695
580
|
log10: "log10";
|
|
696
581
|
neg_log10: "neg_log10";
|
|
697
|
-
abs: "abs";
|
|
698
582
|
rank: "rank";
|
|
699
583
|
}>>;
|
|
700
584
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -706,9 +590,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
706
590
|
size: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
707
591
|
column: z.ZodString;
|
|
708
592
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
593
|
+
abs: "abs";
|
|
709
594
|
log10: "log10";
|
|
710
595
|
neg_log10: "neg_log10";
|
|
711
|
-
abs: "abs";
|
|
712
596
|
rank: "rank";
|
|
713
597
|
}>>;
|
|
714
598
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -720,9 +604,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
720
604
|
low: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
721
605
|
column: z.ZodString;
|
|
722
606
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
607
|
+
abs: "abs";
|
|
723
608
|
log10: "log10";
|
|
724
609
|
neg_log10: "neg_log10";
|
|
725
|
-
abs: "abs";
|
|
726
610
|
rank: "rank";
|
|
727
611
|
}>>;
|
|
728
612
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -734,9 +618,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
734
618
|
high: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
735
619
|
column: z.ZodString;
|
|
736
620
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
621
|
+
abs: "abs";
|
|
737
622
|
log10: "log10";
|
|
738
623
|
neg_log10: "neg_log10";
|
|
739
|
-
abs: "abs";
|
|
740
624
|
rank: "rank";
|
|
741
625
|
}>>;
|
|
742
626
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -748,8 +632,8 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
748
632
|
}, z.core.$strict>;
|
|
749
633
|
name: z.ZodOptional<z.ZodString>;
|
|
750
634
|
orientation: z.ZodOptional<z.ZodEnum<{
|
|
751
|
-
vertical: "vertical";
|
|
752
635
|
horizontal: "horizontal";
|
|
636
|
+
vertical: "vertical";
|
|
753
637
|
}>>;
|
|
754
638
|
}, z.core.$strict>>;
|
|
755
639
|
annotations: z.ZodOptional<z.ZodArray<z.ZodDiscriminatedUnion<[z.ZodObject<{
|
|
@@ -782,24 +666,24 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
782
666
|
x: z.ZodOptional<z.ZodObject<{
|
|
783
667
|
title: z.ZodOptional<z.ZodString>;
|
|
784
668
|
scale: z.ZodOptional<z.ZodEnum<{
|
|
785
|
-
log: "log";
|
|
786
669
|
linear: "linear";
|
|
670
|
+
log: "log";
|
|
787
671
|
}>>;
|
|
788
672
|
}, z.core.$strict>>;
|
|
789
673
|
y: z.ZodOptional<z.ZodObject<{
|
|
790
674
|
title: z.ZodOptional<z.ZodString>;
|
|
791
675
|
scale: z.ZodOptional<z.ZodEnum<{
|
|
792
|
-
log: "log";
|
|
793
676
|
linear: "linear";
|
|
677
|
+
log: "log";
|
|
794
678
|
}>>;
|
|
795
679
|
}, z.core.$strict>>;
|
|
796
680
|
}, z.core.$strict>>;
|
|
797
681
|
facet: z.ZodOptional<z.ZodUnion<readonly [z.ZodString, z.ZodObject<{
|
|
798
682
|
column: z.ZodString;
|
|
799
683
|
transform: z.ZodOptional<z.ZodEnum<{
|
|
684
|
+
abs: "abs";
|
|
800
685
|
log10: "log10";
|
|
801
686
|
neg_log10: "neg_log10";
|
|
802
|
-
abs: "abs";
|
|
803
687
|
rank: "rank";
|
|
804
688
|
}>>;
|
|
805
689
|
orderBy: z.ZodOptional<z.ZodString>;
|
|
@@ -811,17 +695,111 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
811
695
|
}, z.core.$strict>>;
|
|
812
696
|
focus: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
813
697
|
caption: z.ZodOptional<z.ZodString>;
|
|
698
|
+
binding: z.ZodObject<{
|
|
699
|
+
run: z.ZodOptional<z.ZodString>;
|
|
700
|
+
path: z.ZodString;
|
|
701
|
+
snapshot: z.ZodOptional<z.ZodString>;
|
|
702
|
+
unit: z.ZodOptional<z.ZodString>;
|
|
703
|
+
format: z.ZodOptional<z.ZodString>;
|
|
704
|
+
kind: z.ZodLiteral<"artifact-table">;
|
|
705
|
+
rowBound: z.ZodOptional<z.ZodObject<{
|
|
706
|
+
column: z.ZodString;
|
|
707
|
+
count: z.ZodNumber;
|
|
708
|
+
order: z.ZodOptional<z.ZodEnum<{
|
|
709
|
+
asc: "asc";
|
|
710
|
+
desc: "desc";
|
|
711
|
+
}>>;
|
|
712
|
+
}, z.core.$strict>>;
|
|
713
|
+
columns: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
714
|
+
columnMeanings: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodEnum<{
|
|
715
|
+
category: "category";
|
|
716
|
+
count: "count";
|
|
717
|
+
effect: "effect";
|
|
718
|
+
identifier: "identifier";
|
|
719
|
+
"p-value": "p-value";
|
|
720
|
+
}>>>;
|
|
721
|
+
columnLabels: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodString>>;
|
|
722
|
+
}, z.core.$strict>;
|
|
723
|
+
statistics: z.ZodOptional<z.ZodArray<z.ZodObject<{
|
|
724
|
+
label: z.ZodString;
|
|
725
|
+
value: z.ZodObject<{
|
|
726
|
+
run: z.ZodOptional<z.ZodString>;
|
|
727
|
+
path: z.ZodString;
|
|
728
|
+
snapshot: z.ZodOptional<z.ZodString>;
|
|
729
|
+
unit: z.ZodOptional<z.ZodString>;
|
|
730
|
+
format: z.ZodOptional<z.ZodString>;
|
|
731
|
+
kind: z.ZodLiteral<"artifact-value">;
|
|
732
|
+
locator: z.ZodObject<{
|
|
733
|
+
column: z.ZodString;
|
|
734
|
+
rowFilter: z.ZodOptional<z.ZodObject<{
|
|
735
|
+
column: z.ZodString;
|
|
736
|
+
op: z.ZodLiteral<"eq">;
|
|
737
|
+
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
738
|
+
}, z.core.$strict>>;
|
|
739
|
+
row: z.ZodOptional<z.ZodNumber>;
|
|
740
|
+
}, z.core.$strict>;
|
|
741
|
+
assert: z.ZodOptional<z.ZodObject<{
|
|
742
|
+
value: z.ZodUnion<readonly [z.ZodString, z.ZodNumber]>;
|
|
743
|
+
tolerance: z.ZodOptional<z.ZodNumber>;
|
|
744
|
+
}, z.core.$strict>>;
|
|
745
|
+
}, z.core.$strict>;
|
|
746
|
+
}, z.core.$strict>>>;
|
|
747
|
+
track: z.ZodOptional<z.ZodObject<{
|
|
748
|
+
start: z.ZodString;
|
|
749
|
+
end: z.ZodString;
|
|
750
|
+
label: z.ZodString;
|
|
751
|
+
length: z.ZodOptional<z.ZodString>;
|
|
752
|
+
binding: z.ZodObject<{
|
|
753
|
+
run: z.ZodOptional<z.ZodString>;
|
|
754
|
+
path: z.ZodString;
|
|
755
|
+
snapshot: z.ZodOptional<z.ZodString>;
|
|
756
|
+
unit: z.ZodOptional<z.ZodString>;
|
|
757
|
+
format: z.ZodOptional<z.ZodString>;
|
|
758
|
+
kind: z.ZodLiteral<"artifact-table">;
|
|
759
|
+
rowBound: z.ZodOptional<z.ZodObject<{
|
|
760
|
+
column: z.ZodString;
|
|
761
|
+
count: z.ZodNumber;
|
|
762
|
+
order: z.ZodOptional<z.ZodEnum<{
|
|
763
|
+
asc: "asc";
|
|
764
|
+
desc: "desc";
|
|
765
|
+
}>>;
|
|
766
|
+
}, z.core.$strict>>;
|
|
767
|
+
columns: z.ZodOptional<z.ZodArray<z.ZodString>>;
|
|
768
|
+
columnMeanings: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodEnum<{
|
|
769
|
+
category: "category";
|
|
770
|
+
count: "count";
|
|
771
|
+
effect: "effect";
|
|
772
|
+
identifier: "identifier";
|
|
773
|
+
"p-value": "p-value";
|
|
774
|
+
}>>>;
|
|
775
|
+
columnLabels: z.ZodOptional<z.ZodRecord<z.ZodString, z.ZodString>>;
|
|
776
|
+
}, z.core.$strict>;
|
|
777
|
+
}, z.core.$strict>>;
|
|
778
|
+
trees: z.ZodOptional<z.ZodObject<{
|
|
779
|
+
x: z.ZodOptional<z.ZodObject<{
|
|
780
|
+
parent: z.ZodString;
|
|
781
|
+
child: z.ZodString;
|
|
782
|
+
height: z.ZodString;
|
|
783
|
+
binding: typeof AuthoringTableReferenceSchema;
|
|
784
|
+
}, z.core.$strict>>;
|
|
785
|
+
y: z.ZodOptional<z.ZodObject<{
|
|
786
|
+
parent: z.ZodString;
|
|
787
|
+
child: z.ZodString;
|
|
788
|
+
height: z.ZodString;
|
|
789
|
+
binding: typeof AuthoringTableReferenceSchema;
|
|
790
|
+
}, z.core.$strict>>;
|
|
791
|
+
}, z.core.$strict>>;
|
|
814
792
|
}, z.core.$strict>, z.ZodObject<{
|
|
815
793
|
kind: z.ZodLiteral<"figure">;
|
|
816
794
|
id: z.ZodString;
|
|
817
795
|
caption: z.ZodOptional<z.ZodString>;
|
|
818
796
|
binding: z.ZodObject<{
|
|
819
|
-
format: z.ZodOptional<z.ZodString>;
|
|
820
|
-
kind: z.ZodLiteral<"artifact-file">;
|
|
821
|
-
path: z.ZodString;
|
|
822
|
-
unit: z.ZodOptional<z.ZodString>;
|
|
823
797
|
run: z.ZodOptional<z.ZodString>;
|
|
798
|
+
path: z.ZodString;
|
|
824
799
|
snapshot: z.ZodOptional<z.ZodString>;
|
|
800
|
+
unit: z.ZodOptional<z.ZodString>;
|
|
801
|
+
format: z.ZodOptional<z.ZodString>;
|
|
802
|
+
kind: z.ZodLiteral<"artifact-file">;
|
|
825
803
|
}, z.core.$strict>;
|
|
826
804
|
}, z.core.$strict>, z.ZodObject<{
|
|
827
805
|
kind: z.ZodLiteral<"citation">;
|
|
@@ -831,9 +809,9 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
831
809
|
format: z.ZodOptional<z.ZodString>;
|
|
832
810
|
kind: z.ZodLiteral<"citation">;
|
|
833
811
|
idKind: z.ZodEnum<{
|
|
812
|
+
arxiv: "arxiv";
|
|
834
813
|
doi: "doi";
|
|
835
814
|
pmid: "pmid";
|
|
836
|
-
arxiv: "arxiv";
|
|
837
815
|
}>;
|
|
838
816
|
id: z.ZodString;
|
|
839
817
|
raw: z.ZodString;
|
|
@@ -847,12 +825,12 @@ declare const AUTHORING_ATOM_SCHEMAS: readonly [z.ZodObject<{
|
|
|
847
825
|
* The section shape as a plain type. TypeScript cannot infer the block tree through the union cycle, thus
|
|
848
826
|
* the recursive members carry an explicit type.
|
|
849
827
|
*/
|
|
850
|
-
export
|
|
828
|
+
export type AuthoringSectionBlock = {
|
|
851
829
|
kind: "section";
|
|
852
830
|
id: string;
|
|
853
831
|
title: string;
|
|
854
832
|
blocks: AuthoringBlock[];
|
|
855
|
-
}
|
|
833
|
+
};
|
|
856
834
|
/** One block of any kind except a section, as an agent writes it and reads it. */
|
|
857
835
|
export type AuthoringAtomBlock = z.infer<(typeof AUTHORING_ATOM_SCHEMAS)[number]>;
|
|
858
836
|
/** One block of any of the eight kinds, as an agent writes it and reads it. */
|