@gzoo/cortex 0.5.9

package/packages/cli/dist/commands/ingest.js

@@ -0,0 +1,179 @@
+import { resolve, isAbsolute, extname, join } from 'node:path';
+import { existsSync, readFileSync, readdirSync, statSync } from 'node:fs';
+import chalk from 'chalk';
+import { loadConfig, createLogger, getProject } from '@cortex/core';
+import { SQLiteStore } from '@cortex/graph';
+import { Router } from '@cortex/llm';
+import { IngestionPipeline, getParser } from '@cortex/ingest';
+const logger = createLogger('cli:ingest');
+export function registerIngestCommand(program) {
+    program
+        .command('ingest <file-or-glob>')
+        .description('One-shot ingestion of a file or glob pattern into the knowledge graph')
+        .option('--project <name>', 'Project to attach entities to')
+        .option('--dry-run', 'Show what would be extracted without writing to DB', false)
+        .action(async (pattern, opts) => {
+        const globals = program.opts();
+        await runIngest(pattern, opts, globals);
+    });
+}
+async function runIngest(pattern, opts, globals) {
+    // Resolve project root
+    let projectRoot;
+    if (opts.project) {
+        const reg = getProject(opts.project);
+        if (!reg) {
+            console.error(chalk.red(`Error: Project "${opts.project}" is not registered.`));
+            console.log(chalk.dim('Register it with: cortex projects add <name> <path>'));
+            process.exit(1);
+        }
+        projectRoot = reg.path;
+    }
+    const config = loadConfig({ configDir: globals.config ? resolve(globals.config) : projectRoot });
+    // Resolve file paths from pattern
+    const resolvedPattern = isAbsolute(pattern) ? pattern : resolve(process.cwd(), pattern);
+    const filePaths = [];
+    if (resolvedPattern.includes('*')) {
+        // Simple glob: split into dir + file pattern
+        const lastSep = Math.max(resolvedPattern.lastIndexOf('/'), resolvedPattern.lastIndexOf('\\'));
+        const dir = lastSep >= 0 ? resolvedPattern.slice(0, lastSep) : process.cwd();
+        const filePattern = lastSep >= 0 ? resolvedPattern.slice(lastSep + 1) : resolvedPattern;
+        const regex = new RegExp('^' + filePattern.replace(/\./g, '\\.').replace(/\*/g, '.*') + '$');
+        if (existsSync(dir)) {
+            for (const entry of readdirSync(dir)) {
+                if (regex.test(entry)) {
+                    const full = join(dir, entry);
+                    try {
+                        if (statSync(full).isFile())
+                            filePaths.push(full);
+                    }
+                    catch { /* skip inaccessible */ }
+                }
+            }
+        }
+    }
+    else {
+        if (!existsSync(resolvedPattern)) {
+            console.error(chalk.red(`Error: File not found: ${resolvedPattern}`));
+            process.exit(1);
+        }
+        filePaths.push(resolvedPattern);
+    }
+    if (filePaths.length === 0) {
+        console.log(chalk.yellow('No files matched the pattern.'));
+        process.exit(0);
+    }
+    if (!globals.quiet) {
+        if (opts.dryRun) {
+            console.log(chalk.bold(`\n🔍 Cortex Ingest (dry run) — ${filePaths.length} file(s)\n`));
+        }
+        else {
+            console.log(chalk.bold(`\n⚡ Cortex Ingest — ${filePaths.length} file(s)\n`));
+        }
+    }
+    if (opts.dryRun) {
+        // Dry run: parse files and count sections without writing to DB
+        let totalSections = 0;
+        for (const filePath of filePaths) {
+            try {
+                const ext = extname(filePath).slice(1).toLowerCase();
+                const content = readFileSync(filePath, 'utf-8');
+                const parser = getParser(ext, filePath, content);
+                if (!parser) {
+                    console.log(chalk.dim(`  − ${filePath} — unsupported type`));
+                    continue;
+                }
+                const result = await parser.parse(content, filePath);
+                totalSections += result.sections.length;
+                console.log(chalk.dim(`  ~ ${filePath} → ${result.sections.length} sections (est. ${result.sections.length * 3} entities)`));
+            }
+            catch (err) {
+                console.log(chalk.red(`  ✗ ${filePath} — ${err instanceof Error ? err.message : String(err)}`));
+            }
+        }
+        console.log(chalk.dim(`\nDry run complete: ~${totalSections * 3} entities estimated across ${filePaths.length} file(s)`));
+        return;
+    }
+    // Real ingestion
+    const store = new SQLiteStore({
+        dbPath: config.graph.dbPath,
+        walMode: config.graph.walMode,
+        backupOnStartup: false,
+    });
+    const router = new Router({ config });
+    // Resolve project record
+    const projects = await store.listProjects();
+    let project = projects.find((p) => opts.project ? p.name === opts.project : true);
+    if (!project) {
+        project = await store.createProject({
+            name: opts.project ?? 'default',
+            rootPath: projectRoot ?? resolve(config.ingest.watchDirs[0] ?? '.'),
+            privacyLevel: config.privacy.defaultLevel,
+            fileCount: 0,
+            entityCount: 0,
+        });
+    }
+    const pipeline = new IngestionPipeline(router, store, {
+        projectId: project.id,
+        projectName: project.name,
+        projectRoot: project.rootPath,
+        maxFileSize: config.ingest.maxFileSize,
+        batchSize: config.ingest.batchSize,
+        projectPrivacyLevel: project.privacyLevel,
+        mergeConfidenceThreshold: config.graph.mergeConfidenceThreshold,
+    });
+    let totalEntities = 0;
+    let totalRelationships = 0;
+    let errorCount = 0;
+    if (globals.json) {
+        const results = [];
+        for (const filePath of filePaths) {
+            const result = await pipeline.ingestFile(filePath);
+            results.push({
+                file: filePath,
+                entities: result.entityIds.length,
+                relationships: result.relationshipIds.length,
+                status: result.status,
+            });
+            totalEntities += result.entityIds.length;
+            totalRelationships += result.relationshipIds.length;
+            if (result.status === 'failed')
+                errorCount++;
+        }
+        console.log(JSON.stringify({ files: results, total: { entities: totalEntities, relationships: totalRelationships } }));
+        store.close();
+        return;
+    }
+    console.log(chalk.dim(`Ingesting ${filePaths.length} file(s)...\n`));
+    for (const filePath of filePaths) {
+        try {
+            const result = await pipeline.ingestFile(filePath);
+            if (result.status === 'ingested') {
+                totalEntities += result.entityIds.length;
+                totalRelationships += result.relationshipIds.length;
+                console.log(chalk.green(`  ✓ ${filePath}`) + chalk.dim(` → ${result.entityIds.length} entities, ${result.relationshipIds.length} relationships`));
+            }
+            else if (result.status === 'skipped') {
+                console.log(chalk.dim(`  − ${filePath} — skipped${result.error ? ` (${result.error})` : ''}`));
+            }
+            else {
+                errorCount++;
+                console.log(chalk.red(`  ✗ ${filePath} — failed: ${result.error}`));
+            }
+        }
+        catch (err) {
+            errorCount++;
+            logger.error('Ingest failed', { filePath, error: err instanceof Error ? err.message : String(err) });
+            console.log(chalk.red(`  ✗ ${filePath} — error: ${err instanceof Error ? err.message : String(err)}`));
+        }
+    }
+    console.log('');
+    console.log(chalk.bold(`Total: ${totalEntities} entities, ${totalRelationships} relationships ingested`) +
+        (opts.project ? chalk.dim(` into project "${opts.project}"`) : ''));
+    if (errorCount > 0) {
+        console.log(chalk.yellow(`  ${errorCount} file(s) failed`));
+    }
+    store.close();
+    process.exit(errorCount > 0 ? 1 : 0);
+}
+//# sourceMappingURL=ingest.js.map

package/packages/cli/dist/commands/ingest.js.map

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package/packages/cli/dist/commands/init.d.ts

@@ -0,0 +1,3 @@
+import { Command } from 'commander';
+export declare function registerInitCommand(program: Command): void;
+//# sourceMappingURL=init.d.ts.map

package/packages/cli/dist/commands/init.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"init.d.ts","sourceRoot":"","sources":["../../src/commands/init.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AASpC,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAU1D"}

package/packages/cli/dist/commands/init.js

@@ -0,0 +1,285 @@
+import { writeFileSync, existsSync, mkdirSync, readFileSync } from 'node:fs';
+import { resolve, join } from 'node:path';
+import { homedir } from 'node:os';
+import inquirer from 'inquirer';
+import chalk from 'chalk';
+import { getDefaultConfig, cortexConfigSchema } from '@cortex/core';
+export function registerInitCommand(program) {
+    program
+        .command('init')
+        .description('Interactive setup wizard — creates cortex.config.json')
+        .option('--mode <mode>', 'LLM routing mode (cloud-first, hybrid, local-first, local-only)')
+        .option('--non-interactive', 'Use defaults, no prompts', false)
+        .action(async (opts) => {
+        const globals = program.opts();
+        await runInit(opts, globals);
+    });
+}
+// Model presets by VRAM tier
+const GPU_PRESETS = {
+    high: { model: 'qwen2.5:14b-instruct-q5_K_M', numCtx: 8192, extractionLocal: true },
+    mid: { model: 'mistral:7b-instruct-q5_K_M', numCtx: 4096, extractionLocal: false },
+    low: { model: 'phi3:mini-4k-instruct-q4_K_M', numCtx: 2048, extractionLocal: false },
+};
+// Cloud provider presets
+const CLOUD_PRESETS = {
+    anthropic: {
+        provider: 'anthropic',
+        baseUrl: undefined,
+        apiKeySource: 'env:CORTEX_ANTHROPIC_API_KEY',
+        envVar: 'CORTEX_ANTHROPIC_API_KEY',
+        models: { primary: 'claude-sonnet-4-5-20250929', fast: 'claude-haiku-4-5-20251001' },
+        promptCaching: true,
+        label: 'Anthropic (Claude)',
+        hint: 'Best quality, higher cost',
+    },
+    gemini: {
+        provider: 'openai-compatible',
+        baseUrl: 'https://generativelanguage.googleapis.com/v1beta/openai',
+        apiKeySource: 'env:CORTEX_GEMINI_API_KEY',
+        envVar: 'CORTEX_GEMINI_API_KEY',
+        models: { primary: 'gemini-2.5-flash', fast: 'gemini-2.5-flash' },
+        promptCaching: false,
+        label: 'Google Gemini',
+        hint: 'Very cheap, good quality',
+    },
+    groq: {
+        provider: 'openai-compatible',
+        baseUrl: 'https://api.groq.com/openai/v1',
+        apiKeySource: 'env:CORTEX_GROQ_API_KEY',
+        envVar: 'CORTEX_GROQ_API_KEY',
+        models: { primary: 'llama-3.3-70b-versatile', fast: 'llama-3.1-8b-instant' },
+        promptCaching: false,
+        label: 'Groq',
+        hint: 'Fast inference, free tier available',
+    },
+    openrouter: {
+        provider: 'openai-compatible',
+        baseUrl: 'https://openrouter.ai/api/v1',
+        apiKeySource: 'env:CORTEX_OPENROUTER_API_KEY',
+        envVar: 'CORTEX_OPENROUTER_API_KEY',
+        models: { primary: 'google/gemini-2.0-flash-001', fast: 'google/gemini-2.0-flash-lite-001' },
+        promptCaching: false,
+        label: 'OpenRouter',
+        hint: 'Access to many models via one key',
+    },
+};
+const VRAM_HINT = process.platform === 'darwin' ? '(Apple menu → About This Mac → More Info → Graphics)' :
+    process.platform === 'linux' ? '(run: nvidia-smi or rocm-smi)' :
+        '(Task Manager → Performance → GPU → Dedicated GPU Memory)';
+async function runInit(opts, globals) {
+    const config = getDefaultConfig();
+    if (opts.nonInteractive) {
+        if (opts.mode)
+            config.llm.mode = opts.mode;
+        writeConfig(config, globals);
+        return;
+    }
+    if (!globals.quiet)
+        console.log(chalk.bold('\nCortex Setup\n'));
+    // ── Step 1: What do you have? (derives mode automatically) ────────────────
+    const { hasOllama } = await inquirer.prompt([{
+            type: 'confirm',
+            name: 'hasOllama',
+            message: 'Do you have Ollama installed and running locally?',
+            default: false,
+        }]);
+    const { hasApiKey } = await inquirer.prompt([{
+            type: 'confirm',
+            name: 'hasApiKey',
+            message: 'Do you have a cloud LLM API key? (Anthropic, Gemini, Groq, etc.)',
+            default: true,
+        }]);
+    // Derive mode from what the user has
+    let mode;
+    if (hasOllama && hasApiKey) {
+        mode = 'hybrid';
+        console.log(chalk.dim('  → Hybrid mode: GPU for ingestion, Claude for queries'));
+    }
+    else if (hasOllama) {
+        mode = 'local-only';
+        console.log(chalk.dim('  → Local-only mode: everything runs on your GPU'));
+    }
+    else {
+        mode = 'cloud-first';
+        console.log(chalk.dim('  → Cloud mode: everything runs via Claude API'));
+    }
+    config.llm.mode = mode;
+    const usesLocal = hasOllama;
+    const usesCloud = hasApiKey;
+    // ── Step 2: GPU tier (only when Ollama is involved) ───────────────────────
+    if (usesLocal) {
+        console.log('');
+        const { vramGb } = await inquirer.prompt([{
+                type: 'number',
+                name: 'vramGb',
+                message: `How many GB of VRAM does your GPU have? ${VRAM_HINT}`,
+                default: 8,
+                validate: (v) => (v > 0 && Number.isFinite(v)) || 'Enter a number greater than 0',
+            }]);
+        const gpuTier = vramGb >= 24 ? 'high' : vramGb >= 8 ? 'mid' : 'low';
+        const { useManual } = await inquirer.prompt([{
+                type: 'confirm',
+                name: 'useManual',
+                message: `Recommended model: ${GPU_PRESETS[gpuTier].model} — use a different one?`,
+                default: false,
+            }]);
+        if (useManual) {
+            const answers = await inquirer.prompt([
+                {
+                    type: 'input',
+                    name: 'model',
+                    message: 'Ollama model name:',
+                    default: config.llm.local.model,
+                },
+                {
+                    type: 'number',
+                    name: 'numCtx',
+                    message: 'Context window (lower = less VRAM):',
+                    default: config.llm.local.numCtx,
+                },
+            ]);
+            config.llm.local.model = answers.model;
+            config.llm.local.numCtx = answers.numCtx;
+        }
+        else {
+            const preset = GPU_PRESETS[gpuTier];
+            config.llm.local.model = preset.model;
+            config.llm.local.numCtx = preset.numCtx;
+            console.log(chalk.dim(`  → run: ollama pull ${preset.model}`));
+            if (mode === 'hybrid') {
+                const extractionRoute = preset.extractionLocal ? 'local' : 'cloud';
+                config.llm.taskRouting = {
+                    entity_extraction: extractionRoute,
+                    relationship_inference: extractionRoute,
+                    contradiction_detection: 'local',
+                    conversational_query: 'cloud',
+                    context_ranking: 'local',
+                    embedding_generation: 'local',
+                };
+                if (!preset.extractionLocal) {
+                    console.log(chalk.dim('  → File extraction routed to cloud (more reliable on 7B models)'));
+                }
+            }
+        }
+    }
+    // ── Step 3: Cloud provider selection + API key ─────────────────────────────
+    let selectedPresetKey = 'gemini';
+    if (usesCloud) {
+        console.log('');
+        const choices = Object.entries(CLOUD_PRESETS).map(([key, preset]) => ({
+            name: `${preset.label} — ${preset.hint}`,
+            value: key,
+        }));
+        const { cloudProvider } = await inquirer.prompt([{
+                type: 'list',
+                name: 'cloudProvider',
+                message: 'Which cloud LLM provider?',
+                choices,
+                default: 'gemini',
+            }]);
+        selectedPresetKey = cloudProvider;
+        const preset = CLOUD_PRESETS[selectedPresetKey];
+        config.llm.cloud.provider = preset.provider;
+        if (preset.baseUrl) {
+            config.llm.cloud.baseUrl = preset.baseUrl;
+        }
+        config.llm.cloud.apiKeySource = preset.apiKeySource;
+        config.llm.cloud.models = { ...preset.models };
+        config.llm.cloud.promptCaching = preset.promptCaching;
+        // Check if key is already set
+        const envVar = preset.envVar;
+        if (process.env[envVar]) {
+            console.log(chalk.green(`  ✓ ${envVar} found in environment`));
+        }
+        else {
+            // Prompt for the key and save to ~/.cortex/.env
+            const { apiKey } = await inquirer.prompt([{
+                    type: 'password',
+                    name: 'apiKey',
+                    message: `Paste your ${preset.label} API key:`,
+                    mask: '*',
+                }]);
+            if (apiKey.trim()) {
+                writeEnvFile(envVar, apiKey.trim());
+                // Also set it for this process so subsequent steps can use it
+                process.env[envVar] = apiKey.trim();
+                console.log(chalk.green(`  ✓ Saved to ~/.cortex/.env`));
+            }
+            else {
+                console.log(chalk.yellow(`  ! No key provided — set ${envVar} later in ~/.cortex/.env`));
+            }
+        }
+    }
+    // ── Step 4: Watch directories ──────────────────────────────────────────────
+    console.log('');
+    const { watchDirs } = await inquirer.prompt([{
+            type: 'input',
+            name: 'watchDirs',
+            message: 'Directories to watch (comma-separated):',
+            default: '.',
+        }]);
+    config.ingest.watchDirs = watchDirs.split(',').map((d) => d.trim());
+    // ── Step 5: Monthly budget (if cloud involved) ─────────────────────────────
+    if (usesCloud) {
+        const { budget } = await inquirer.prompt([{
+                type: 'number',
+                name: 'budget',
+                message: 'Monthly LLM spend limit in USD (0 = no limit):',
+                default: 25,
+            }]);
+        config.llm.budget.monthlyLimitUsd = budget;
+    }
+    // ── Step 6: Write ──────────────────────────────────────────────────────────
+    writeConfig(config, globals);
+}
+function writeEnvFile(key, value) {
+    const cortexDir = join(homedir(), '.cortex');
+    if (!existsSync(cortexDir)) {
+        mkdirSync(cortexDir, { recursive: true });
+    }
+    const envPath = join(cortexDir, '.env');
+    let content = '';
+    if (existsSync(envPath)) {
+        content = readFileSync(envPath, 'utf-8');
+        // Replace existing key if present
+        const regex = new RegExp(`^${key}=.*$`, 'm');
+        if (regex.test(content)) {
+            content = content.replace(regex, `${key}=${value}`);
+            writeFileSync(envPath, content, { mode: 0o600 });
+            return;
+        }
+        // Ensure trailing newline before appending
+        if (content.length > 0 && !content.endsWith('\n')) {
+            content += '\n';
+        }
+    }
+    else {
+        content = '# Cortex API Keys\n# This file is loaded automatically by Cortex. Do not commit this file.\n\n';
+    }
+    content += `${key}=${value}\n`;
+    writeFileSync(envPath, content, { mode: 0o600 });
+}
+function writeConfig(config, globals) {
+    const validated = cortexConfigSchema.parse(config);
+    // Ensure ~/.cortex/ dir exists for DB, logs, etc.
+    const cortexDir = join(homedir(), '.cortex');
+    if (!existsSync(cortexDir)) {
+        mkdirSync(cortexDir, { recursive: true });
+    }
+    // Write config to --config dir if specified, otherwise cwd (per-project config)
+    const configPath = globals.config
+        ? resolve(globals.config, 'cortex.config.json')
+        : resolve(process.cwd(), 'cortex.config.json');
+    writeFileSync(configPath, JSON.stringify(validated, null, 2), { mode: 0o600 });
+    if (!globals.quiet) {
+        if (globals.json) {
+            console.log(JSON.stringify({ success: true, path: configPath }));
+        }
+        else {
+            console.log(chalk.green(`\n✓ Config written to ${configPath}`));
+            console.log(chalk.dim('  Run `cortex watch` to start.\n'));
+        }
+    }
+}
+//# sourceMappingURL=init.js.map

package/packages/cli/dist/commands/init.js.map

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package/packages/cli/dist/commands/mcp.d.ts

@@ -0,0 +1,3 @@
+import { Command } from 'commander';
+export declare function registerMcpCommand(program: Command): void;
+//# sourceMappingURL=mcp.d.ts.map

package/packages/cli/dist/commands/mcp.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"mcp.d.ts","sourceRoot":"","sources":["../../src/commands/mcp.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAsBpC,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAiDzD"}

package/packages/cli/dist/commands/mcp.js

@@ -0,0 +1,65 @@
+import { spawn } from 'node:child_process';
+import { resolve, dirname } from 'node:path';
+import { existsSync, readFileSync } from 'node:fs';
+import chalk from 'chalk';
+function findPackageRoot(startDir) {
+    let dir = startDir;
+    for (let i = 0; i < 10; i++) {
+        try {
+            const pkgPath = resolve(dir, 'package.json');
+            const pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));
+            if (pkg.name === 'gzoo-cortex')
+                return dir;
+        }
+        catch { /* keep looking */ }
+        const parent = dirname(dir);
+        if (parent === dir)
+            break;
+        dir = parent;
+    }
+    return startDir;
+}
+export function registerMcpCommand(program) {
+    program
+        .command('mcp')
+        .description('Start the Cortex MCP server (stdio transport for Claude Code)')
+        .option('--config-dir <path>', 'Directory containing cortex.config.json')
+        .action(async (opts) => {
+        const globals = program.opts();
+        const pkgRoot = findPackageRoot(import.meta.dirname);
+        const bundledMcp = resolve(pkgRoot, 'dist/cortex-mcp.mjs');
+        const workspaceMcp = resolve(pkgRoot, 'packages/mcp/dist/index.js');
+        const mcpEntry = existsSync(bundledMcp) ? bundledMcp : workspaceMcp;
+        if (!existsSync(mcpEntry)) {
+            console.error(chalk.red('Error: MCP server not built.'));
+            console.error(chalk.dim(`Expected: ${mcpEntry}`));
+            console.error(chalk.dim('Run npm run build first.'));
+            process.exit(1);
+        }
+        if (process.stdout.isTTY) {
+            process.stderr.write(chalk.yellow('\n[cortex mcp] Starting MCP server on stdio.\n') +
+                chalk.dim('This process blocks. It is meant to be launched by Claude Code, not run manually.\n') +
+                chalk.dim('Register with: claude mcp add cortex --scope user -- node ' + mcpEntry + '\n\n'));
+        }
+        const env = {
+            ...process.env,
+            CORTEX_LOG_LEVEL: 'error',
+        };
+        if (opts.configDir) {
+            env['CORTEX_CONFIG_DIR'] = resolve(opts.configDir);
+        }
+        if (globals.config) {
+            env['CORTEX_CONFIG_DIR'] = resolve(globals.config);
+        }
+        const child = spawn(process.execPath, [mcpEntry], {
+            stdio: 'inherit',
+            env,
+        });
+        child.on('exit', (code) => process.exit(code ?? 0));
+        child.on('error', (err) => {
+            process.stderr.write(`[cortex mcp] Error: ${err.message}\n`);
+            process.exit(1);
+        });
+    });
+}
+//# sourceMappingURL=mcp.js.map

package/packages/cli/dist/commands/mcp.js.map

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package/packages/cli/dist/commands/models.d.ts

@@ -0,0 +1,3 @@
+import { Command } from 'commander';
+export declare function registerModelsCommand(program: Command): void;
+//# sourceMappingURL=models.d.ts.map

package/packages/cli/dist/commands/models.d.ts.map

@@ -0,0 +1 @@
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