@gzoo/cortex 0.5.9

package/packages/graph/dist/migrations/001-initial.js.map

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package/packages/graph/dist/query-engine.d.ts

@@ -0,0 +1,35 @@
+import type { Entity, Relationship } from '@cortex/core';
+import type { SQLiteStore } from './sqlite-store.js';
+import type { VectorStore } from './vector-store.js';
+export interface QueryContext {
+    entities: Entity[];
+    relationships: Relationship[];
+    totalTokensEstimate: number;
+}
+export interface QueryEngineOptions {
+    maxContextTokens?: number;
+    maxResultEntities?: number;
+    ftsWeight?: number;
+    vectorWeight?: number;
+}
+export declare class QueryEngine {
+    private sqliteStore;
+    private vectorStore;
+    private maxContextTokens;
+    private maxResultEntities;
+    private ftsWeight;
+    private vectorWeight;
+    constructor(sqliteStore: SQLiteStore, vectorStore: VectorStore, options?: QueryEngineOptions);
+    assembleContext(query: string, queryEmbedding?: Float32Array, projectId?: string): Promise<QueryContext>;
+    private filterByPrivacy;
+    /**
+     * Converts a natural language query to an FTS5-safe keyword query.
+     * FTS5 uses AND semantics by default, so "what is the architecture" would
+     * require ALL words to match. We strip stop words and use OR semantics so
+     * entities matching ANY meaningful keyword are returned.
+     */
+    private buildFtsQuery;
+    private ftsSearch;
+    private mergeAndRank;
+}
+//# sourceMappingURL=query-engine.d.ts.map

package/packages/graph/dist/query-engine.d.ts.map

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package/packages/graph/dist/query-engine.js

@@ -0,0 +1,185 @@
+import { createLogger } from '@cortex/core';
+const logger = createLogger('graph:query-engine');
+const AVG_CHARS_PER_TOKEN = 4;
+function estimateTokens(text) {
+    return Math.ceil(text.length / AVG_CHARS_PER_TOKEN);
+}
+export class QueryEngine {
+    sqliteStore;
+    vectorStore;
+    maxContextTokens;
+    maxResultEntities;
+    ftsWeight;
+    vectorWeight;
+    constructor(sqliteStore, vectorStore, options = {}) {
+        this.sqliteStore = sqliteStore;
+        this.vectorStore = vectorStore;
+        this.maxContextTokens = options.maxContextTokens ?? 50_000;
+        this.maxResultEntities = options.maxResultEntities ?? 30;
+        this.ftsWeight = options.ftsWeight ?? 0.4;
+        this.vectorWeight = options.vectorWeight ?? 0.6;
+    }
+    async assembleContext(query, queryEmbedding, projectId) {
+        // Run FTS and vector search in parallel
+        const [ftsResults, vectorResults] = await Promise.all([
+            this.ftsSearch(query, projectId),
+            queryEmbedding ? this.vectorStore.search(queryEmbedding, 30) : Promise.resolve([]),
+        ]);
+        // Merge and rank results
+        const rankedEntities = this.mergeAndRank(ftsResults, vectorResults);
+        // Collect entities up to token budget and entity count limit
+        const contextEntities = [];
+        let totalTokens = 0;
+        const budgetForEntities = Math.floor(this.maxContextTokens * 0.7);
+        for (const entity of rankedEntities) {
+            if (contextEntities.length >= this.maxResultEntities)
+                break;
+            const entityTokens = estimateTokens(entity.content) + estimateTokens(entity.name);
+            if (totalTokens + entityTokens > budgetForEntities)
+                break;
+            contextEntities.push(entity);
+            totalTokens += entityTokens;
+        }
+        // Filter entities by project privacy level
+        const privacyFiltered = await this.filterByPrivacy(contextEntities);
+        // Gather relationships between context entities
+        const entityIds = new Set(privacyFiltered.map((e) => e.id));
+        const relationships = [];
+        for (const entity of privacyFiltered) {
+            const rels = await this.sqliteStore.getRelationshipsForEntity(entity.id);
+            for (const rel of rels) {
+                if (entityIds.has(rel.sourceEntityId) && entityIds.has(rel.targetEntityId)) {
+                    relationships.push(rel);
+                }
+            }
+        }
+        // Deduplicate relationships
+        const uniqueRels = [...new Map(relationships.map((r) => [r.id, r])).values()];
+        const relTokens = uniqueRels.reduce((sum, r) => sum + estimateTokens(r.description ?? '') + 20, 0);
+        // Recalculate tokens after privacy filtering (content may have been redacted)
+        const filteredTokens = privacyFiltered.reduce((sum, e) => sum + estimateTokens(e.content) + estimateTokens(e.name), 0);
+        logger.debug('Context assembled', {
+            entities: privacyFiltered.length,
+            entitiesFiltered: contextEntities.length - privacyFiltered.length,
+            relationships: uniqueRels.length,
+            totalTokensEstimate: filteredTokens + relTokens,
+        });
+        return {
+            entities: privacyFiltered,
+            relationships: uniqueRels,
+            totalTokensEstimate: filteredTokens + relTokens,
+        };
+    }
+    async filterByPrivacy(entities) {
+        if (entities.length === 0)
+            return entities;
+        // Batch-fetch unique project IDs to avoid N+1 queries
+        const projectIds = [...new Set(entities.map((e) => e.projectId))];
+        const projectPrivacy = new Map();
+        for (const pid of projectIds) {
+            const project = await this.sqliteStore.getProject(pid);
+            if (project) {
+                projectPrivacy.set(pid, project.privacyLevel);
+            }
+        }
+        const filtered = [];
+        let excluded = 0;
+        let redacted = 0;
+        for (const entity of entities) {
+            const level = projectPrivacy.get(entity.projectId) ?? 'standard';
+            if (level === 'restricted') {
+                excluded++;
+                continue;
+            }
+            if (level === 'sensitive') {
+                redacted++;
+                filtered.push({ ...entity, content: '[REDACTED]', properties: {} });
+                continue;
+            }
+            filtered.push(entity);
+        }
+        if (excluded > 0 || redacted > 0) {
+            logger.info('Privacy filter applied', { excluded, redacted, kept: filtered.length });
+        }
+        return filtered;
+    }
+    /**
+     * Converts a natural language query to an FTS5-safe keyword query.
+     * FTS5 uses AND semantics by default, so "what is the architecture" would
+     * require ALL words to match. We strip stop words and use OR semantics so
+     * entities matching ANY meaningful keyword are returned.
+     */
+    buildFtsQuery(query) {
+        const stopWords = new Set([
+            'a', 'an', 'the', 'and', 'or', 'but', 'in', 'on', 'at', 'to', 'for',
+            'of', 'with', 'by', 'from', 'is', 'are', 'was', 'were', 'be', 'been',
+            'being', 'have', 'has', 'had', 'do', 'does', 'did', 'will', 'would',
+            'could', 'should', 'may', 'might', 'shall', 'can', 'need', 'must',
+            'what', 'which', 'who', 'how', 'why', 'when', 'where', 'that', 'this',
+            'these', 'those', 'it', 'its', 'me', 'my', 'you', 'your', 'we', 'our',
+            'they', 'their', 'he', 'she', 'i', 'all', 'any', 'each', 'some', 'no',
+            'not', 'so', 'yet', 'use', 'used', 'using', 'about', 'tell', 'know',
+            'get', 'got', 'make', 'made', 'see', 'give', 'go', 'come', 'take',
+        ]);
+        const keywords = query
+            .replace(/[^a-zA-Z0-9\s]/g, ' ') // strip all non-alphanumeric chars (catches ?, !, ., etc.)
+            .toLowerCase()
+            .split(/\s+/)
+            .filter((w) => w.length >= 3 && !stopWords.has(w));
+        if (keywords.length === 0) {
+            // Fallback: sanitize raw query for FTS5 safety
+            return query.replace(/[^a-zA-Z0-9\s]/g, ' ').trim();
+        }
+        return keywords.join(' OR ');
+    }
+    async ftsSearch(query, projectId) {
+        const ftsQuery = this.buildFtsQuery(query);
+        try {
+            if (projectId) {
+                return await this.sqliteStore.findEntities({
+                    search: ftsQuery,
+                    projectId,
+                    limit: 30,
+                });
+            }
+            return await this.sqliteStore.searchEntities(ftsQuery, 30);
+        }
+        catch (err) {
+            logger.warn('FTS search failed, returning empty results', {
+                error: err instanceof Error ? err.message : String(err),
+                query: ftsQuery,
+            });
+            return [];
+        }
+    }
+    mergeAndRank(ftsResults, vectorResults) {
+        // Score-based ranking combining FTS rank position and vector distance
+        const scores = new Map();
+        // FTS results: score by position (best match first)
+        for (let i = 0; i < ftsResults.length; i++) {
+            const entity = ftsResults[i];
+            const positionScore = 1 - i / Math.max(ftsResults.length, 1);
+            scores.set(entity.id, {
+                entity,
+                score: positionScore * this.ftsWeight,
+            });
+        }
+        // Vector results: score by inverse distance
+        if (vectorResults.length > 0) {
+            const maxDist = Math.max(...vectorResults.map((r) => r.distance), 1);
+            for (const vr of vectorResults) {
+                const distScore = 1 - vr.distance / maxDist;
+                const existing = scores.get(vr.entityId);
+                if (existing) {
+                    existing.score += distScore * this.vectorWeight;
+                }
+                // Vector-only results would need entity fetch — skip for now.
+                // They'll be included once QueryEngine integrates more tightly.
+            }
+        }
+        return [...scores.values()]
+            .sort((a, b) => b.score - a.score)
+            .map((s) => s.entity);
+    }
+}
+//# sourceMappingURL=query-engine.js.map

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package/packages/graph/dist/sqlite-store.d.ts

@@ -0,0 +1,125 @@
+import type { Entity, Relationship, Contradiction, FileRecord, Project, EntityQuery, GraphStats, IntegrityResult, GraphStore } from '@cortex/core';
+export interface FileStatusBreakdown {
+    ingested: number;
+    failed: number;
+    skipped: number;
+    pending: number;
+}
+export interface FailedFile {
+    path: string;
+    relativePath: string;
+    parseError: string;
+}
+export interface EntityBreakdown {
+    type: string;
+    count: number;
+    avgConfidence: number;
+}
+export interface RelationshipBreakdown {
+    type: string;
+    count: number;
+}
+export interface ContradictionBreakdown {
+    active: number;
+    resolved: number;
+    dismissed: number;
+    highSeverity: number;
+    mediumSeverity: number;
+    lowSeverity: number;
+}
+export interface TopContradiction {
+    id: string;
+    severity: string;
+    description: string;
+    entityA: string;
+    entityB: string;
+}
+export interface ReportData {
+    generatedAt: string;
+    fileStatus: FileStatusBreakdown;
+    failedFiles: FailedFile[];
+    entityBreakdown: EntityBreakdown[];
+    supersededCount: number;
+    relationshipBreakdown: RelationshipBreakdown[];
+    contradictions: ContradictionBreakdown;
+    topContradictions: TopContradiction[];
+    tokenEstimate: {
+        totalInput: number;
+        totalOutput: number;
+    };
+}
+export interface SQLiteStoreOptions {
+    dbPath?: string;
+    walMode?: boolean;
+    backupOnStartup?: boolean;
+}
+export declare class SQLiteStore implements GraphStore {
+    private db;
+    private dbPath;
+    constructor(options?: SQLiteStoreOptions);
+    private migrate;
+    private backupSync;
+    close(): void;
+    createEntity(entity: Omit<Entity, 'id' | 'createdAt' | 'updatedAt'>): Promise<Entity>;
+    getEntity(id: string): Promise<Entity | null>;
+    updateEntity(id: string, updates: Partial<Entity>): Promise<Entity>;
+    deleteEntity(id: string, soft?: boolean): Promise<void>;
+    findEntities(query: EntityQuery): Promise<Entity[]>;
+    createRelationship(rel: Omit<Relationship, 'id' | 'createdAt' | 'updatedAt'>): Promise<Relationship>;
+    getRelationship(id: string): Promise<Relationship | null>;
+    getRelationshipsForEntity(entityId: string, direction?: 'in' | 'out' | 'both'): Promise<Relationship[]>;
+    deleteRelationship(id: string): Promise<void>;
+    deleteBySourcePath(pathPrefix: string): {
+        deletedEntities: number;
+        deletedRelationships: number;
+        deletedFiles: number;
+    };
+    resetDatabase(): void;
+    pruneSoftDeleted(): {
+        deletedEntities: number;
+        deletedRelationships: number;
+    };
+    upsertFile(file: Omit<FileRecord, 'id'>): Promise<FileRecord>;
+    getFile(path: string): Promise<FileRecord | null>;
+    getFilesByProject(projectId: string): Promise<FileRecord[]>;
+    createProject(project: Omit<Project, 'id' | 'createdAt'>): Promise<Project>;
+    getProject(id: string): Promise<Project | null>;
+    listProjects(): Promise<Project[]>;
+    createContradiction(contradiction: Omit<Contradiction, 'id'>): Promise<Contradiction>;
+    findContradictions(query?: {
+        status?: Contradiction['status'];
+        entityId?: string;
+        limit?: number;
+    }): Promise<Contradiction[]>;
+    updateContradiction(id: string, update: {
+        status: Contradiction['status'];
+        resolvedAction?: Contradiction['resolvedAction'];
+        resolvedAt?: string;
+    }): Promise<void>;
+    searchEntities(text: string, limit?: number): Promise<Entity[]>;
+    semanticSearch(_embedding: Float32Array, _limit?: number): Promise<Entity[]>;
+    getStats(): Promise<GraphStats>;
+    getReportData(): ReportData;
+    backup(): Promise<string>;
+    integrityCheck(): Promise<IntegrityResult>;
+    getGraphData(options?: {
+        projectId?: string;
+        limit?: number;
+    }): {
+        nodes: Array<{
+            id: string;
+            name: string;
+            type: string;
+            confidence: number;
+            sourceFile: string;
+        }>;
+        edges: Array<{
+            id: string;
+            source: string;
+            target: string;
+            type: string;
+            confidence: number;
+        }>;
+    };
+}
+//# sourceMappingURL=sqlite-store.d.ts.map

package/packages/graph/dist/sqlite-store.d.ts.map

@@ -0,0 +1 @@
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