@graphty/graph-io 0.3.48 → 0.3.50
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/chunks/{approximations-C2riR4NT.js → approximations-BRXsll0T.js} +2 -2
- package/dist/chunks/{approximations-C2riR4NT.js.map → approximations-BRXsll0T.js.map} +1 -1
- package/dist/chunks/bends-BGXjv_U4.js +129 -0
- package/dist/chunks/bends-BGXjv_U4.js.map +1 -0
- package/dist/chunks/{block-Cu22ewuS.js → block-yl0f_qLO.js} +931 -164
- package/dist/chunks/block-yl0f_qLO.js.map +1 -0
- package/dist/chunks/choose-CczZJaX_.js +717 -0
- package/dist/chunks/choose-CczZJaX_.js.map +1 -0
- package/dist/chunks/{codes-CV_Bhcyi.js → codes-BE2xir2k.js} +6 -2
- package/dist/chunks/codes-BE2xir2k.js.map +1 -0
- package/dist/chunks/{constants-D0LqcsLJ.js → constants-CKkYLPtt.js} +2 -2
- package/dist/chunks/{constants-D0LqcsLJ.js.map → constants-CKkYLPtt.js.map} +1 -1
- package/dist/chunks/{context-cgmmOxZ2.js → context-DizmppHy.js} +5 -4
- package/dist/chunks/{context-cgmmOxZ2.js.map → context-DizmppHy.js.map} +1 -1
- package/dist/chunks/{convert-BcQ8_jMo.js → convert-Ct2zelbQ.js} +7 -2
- package/dist/chunks/convert-Ct2zelbQ.js.map +1 -0
- package/dist/chunks/{credentials-BiQsnMTb.js → credentials-CmvJXYeH.js} +67 -16
- package/dist/chunks/credentials-CmvJXYeH.js.map +1 -0
- package/dist/chunks/{cx-export-BEeF6ymo.js → cx-export-Bt6NoqTQ.js} +3 -3
- package/dist/chunks/{cx-export-BEeF6ymo.js.map → cx-export-Bt6NoqTQ.js.map} +1 -1
- package/dist/chunks/descriptor-B28U25x4.js +60 -0
- package/dist/chunks/descriptor-B28U25x4.js.map +1 -0
- package/dist/chunks/{descriptor-BJ-W0Jd-.js → descriptor-Dhez_Cew.js} +11 -2
- package/dist/chunks/descriptor-Dhez_Cew.js.map +1 -0
- package/dist/chunks/{emit-CD8xnY8s.js → emit-7Jkpg0yd.js} +1788 -133
- package/dist/chunks/emit-7Jkpg0yd.js.map +1 -0
- package/dist/chunks/{escape-DH2Egt-l.js → escape-CuCIzNMB.js} +8 -8
- package/dist/chunks/{escape-DH2Egt-l.js.map → escape-CuCIzNMB.js.map} +1 -1
- package/dist/chunks/{export-CZ7VRm4I.js → export-Cha4dRFz.js} +45 -387
- package/dist/chunks/export-Cha4dRFz.js.map +1 -0
- package/dist/chunks/{exporter-ChjL5fmP.js → exporter-1Ajud15J.js} +9 -8
- package/dist/chunks/{exporter-ChjL5fmP.js.map → exporter-1Ajud15J.js.map} +1 -1
- package/dist/chunks/{exporter-BIdaoIgh.js → exporter-B6yvL3wy.js} +7 -7
- package/dist/chunks/{exporter-BIdaoIgh.js.map → exporter-B6yvL3wy.js.map} +1 -1
- package/dist/chunks/{exporter-Dcw7Ldtq.js → exporter-BP6otMO6.js} +6 -6
- package/dist/chunks/{exporter-Dcw7Ldtq.js.map → exporter-BP6otMO6.js.map} +1 -1
- package/dist/chunks/{exporter-DtVU80Fa.js → exporter-CA5q8ROP.js} +9 -8
- package/dist/chunks/{exporter-DtVU80Fa.js.map → exporter-CA5q8ROP.js.map} +1 -1
- package/dist/chunks/{exporter-bxxjOrDZ.js → exporter-CQQZFJ2v.js} +1284 -156
- package/dist/chunks/exporter-CQQZFJ2v.js.map +1 -0
- package/dist/chunks/format-BXiAb-1h.js +408 -0
- package/dist/chunks/format-BXiAb-1h.js.map +1 -0
- package/dist/chunks/{generic-CP6YD34u.js → generic-Dc21MAdg.js} +387 -31
- package/dist/chunks/generic-Dc21MAdg.js.map +1 -0
- package/dist/chunks/{importer-B87_fmVx.js → importer-C6NVpCXp.js} +327 -84
- package/dist/chunks/importer-C6NVpCXp.js.map +1 -0
- package/dist/chunks/{importer-DPZDN40-.js → importer-CKFe4q54.js} +25 -17
- package/dist/chunks/importer-CKFe4q54.js.map +1 -0
- package/dist/chunks/{importer-Bji2MeWr.js → importer-CKbUbsJA.js} +13 -10
- package/dist/chunks/{importer-Bji2MeWr.js.map → importer-CKbUbsJA.js.map} +1 -1
- package/dist/chunks/{importer-CB_zV5_L.js → importer-ClCsdgTJ.js} +208 -1104
- package/dist/chunks/importer-ClCsdgTJ.js.map +1 -0
- package/dist/chunks/{importer-e3huMZbm.js → importer-CyVZTrf0.js} +14 -10
- package/dist/chunks/importer-CyVZTrf0.js.map +1 -0
- package/dist/chunks/{importer-CVT-JyDE.js → importer-DgG4v1Ms.js} +1537 -355
- package/dist/chunks/importer-DgG4v1Ms.js.map +1 -0
- package/dist/chunks/{importer-Cyy6UseH.js → importer-asFUrIsj.js} +66 -13
- package/dist/chunks/importer-asFUrIsj.js.map +1 -0
- package/dist/chunks/{input-Ccg9I22A.js → input-CAxt_aV-.js} +4 -4
- package/dist/chunks/{input-Ccg9I22A.js.map → input-CAxt_aV-.js.map} +1 -1
- package/dist/chunks/{json-elements-By172SVq.js → json-elements-Cq76WjnZ.js} +4 -4
- package/dist/chunks/{json-elements-By172SVq.js.map → json-elements-Cq76WjnZ.js.map} +1 -1
- package/dist/chunks/{lexicon-u2SI5xcx.js → lexicon-IVRq2Uoo.js} +282 -74
- package/dist/chunks/lexicon-IVRq2Uoo.js.map +1 -0
- package/dist/chunks/{ontology-export-BwgMyuF0.js → ontology-export-OMo91mb0.js} +4 -4
- package/dist/chunks/{ontology-export-BwgMyuF0.js.map → ontology-export-OMo91mb0.js.map} +1 -1
- package/dist/chunks/{records-Cgvxz-Vx.js → records-NJiYvekn.js} +2 -2
- package/dist/chunks/{records-Cgvxz-Vx.js.map → records-NJiYvekn.js.map} +1 -1
- package/dist/chunks/{report-CgdsL9Hb.js → report-CwMfYa9J.js} +23 -23
- package/dist/chunks/{report-CgdsL9Hb.js.map → report-CwMfYa9J.js.map} +1 -1
- package/dist/chunks/round-trip-Cy3_SHRZ.js +79 -0
- package/dist/chunks/round-trip-Cy3_SHRZ.js.map +1 -0
- package/dist/chunks/{sigv4-LkAzsLAu.js → sigv4-BXwVbza3.js} +5 -5
- package/dist/chunks/sigv4-BXwVbza3.js.map +1 -0
- package/dist/chunks/{styles-CaABMoO1.js → styles-CAVmBLgp.js} +1237 -138
- package/dist/chunks/styles-CAVmBLgp.js.map +1 -0
- package/dist/chunks/styles-CPczw1Jz.js +1928 -0
- package/dist/chunks/styles-CPczw1Jz.js.map +1 -0
- package/dist/chunks/styles-boK6Ln54.js +2847 -0
- package/dist/chunks/styles-boK6Ln54.js.map +1 -0
- package/dist/chunks/{styles-yed-Cs1nmrjn.js → styles-yed-XeFBQ6VS.js} +506 -175
- package/dist/chunks/styles-yed-XeFBQ6VS.js.map +1 -0
- package/dist/chunks/{text-BuKQVMz2.js → text-ystE2bYi.js} +2 -2
- package/dist/chunks/{text-BuKQVMz2.js.map → text-ystE2bYi.js.map} +1 -1
- package/dist/csv.js +7 -7
- package/dist/cx.js +2 -2
- package/dist/cx2.js +2 -2
- package/dist/cys.js +1 -1
- package/dist/dot.js +8 -4
- package/dist/dot.js.map +1 -1
- package/dist/gexf.js +42 -12
- package/dist/gexf.js.map +1 -1
- package/dist/gml.js +848 -194
- package/dist/gml.js.map +1 -1
- package/dist/graph-io.js +230 -193
- package/dist/graph-io.js.map +1 -1
- package/dist/graphml.js +3 -3
- package/dist/json.js +3 -2
- package/dist/neo4j.js +6 -6
- package/dist/obo.js +1 -1
- package/dist/pajek.js +1 -1
- package/dist/positions.js +45 -3
- package/dist/positions.js.map +1 -1
- package/dist/sources-cypher.js +141 -23
- package/dist/sources-cypher.js.map +1 -1
- package/dist/sources-ndex.js +2 -2
- package/dist/sources-rest.js +32 -6
- package/dist/sources-rest.js.map +1 -1
- package/dist/sources-sparql.d.ts +1 -0
- package/dist/sources-sparql.js +439 -0
- package/dist/sources-sparql.js.map +1 -0
- package/dist/src/formats/cx/importer.d.ts.map +1 -1
- package/dist/src/formats/cx/importer.js +5 -1
- package/dist/src/formats/cx/importer.js.map +1 -1
- package/dist/src/formats/cx/styles.d.ts +24 -1
- package/dist/src/formats/cx/styles.d.ts.map +1 -1
- package/dist/src/formats/cx/styles.js +117 -11
- package/dist/src/formats/cx/styles.js.map +1 -1
- package/dist/src/formats/cx2/importer.d.ts.map +1 -1
- package/dist/src/formats/cx2/importer.js +1 -0
- package/dist/src/formats/cx2/importer.js.map +1 -1
- package/dist/src/formats/cx2/styles.d.ts.map +1 -1
- package/dist/src/formats/cx2/styles.js +3 -1
- package/dist/src/formats/cx2/styles.js.map +1 -1
- package/dist/src/formats/cys/importer.d.ts.map +1 -1
- package/dist/src/formats/cys/importer.js +1 -0
- package/dist/src/formats/cys/importer.js.map +1 -1
- package/dist/src/formats/cys/styles.d.ts +2 -0
- package/dist/src/formats/cys/styles.d.ts.map +1 -1
- package/dist/src/formats/cys/styles.js +15 -7
- package/dist/src/formats/cys/styles.js.map +1 -1
- package/dist/src/formats/dot/drawing.d.ts +98 -0
- package/dist/src/formats/dot/drawing.d.ts.map +1 -0
- package/dist/src/formats/dot/drawing.js +734 -0
- package/dist/src/formats/dot/drawing.js.map +1 -0
- package/dist/src/formats/dot/exporter.d.ts.map +1 -1
- package/dist/src/formats/dot/exporter.js +34 -2
- package/dist/src/formats/dot/exporter.js.map +1 -1
- package/dist/src/formats/dot/importer.d.ts +6 -1
- package/dist/src/formats/dot/importer.d.ts.map +1 -1
- package/dist/src/formats/dot/importer.js +170 -33
- package/dist/src/formats/dot/importer.js.map +1 -1
- package/dist/src/formats/dot/index.d.ts +3 -1
- package/dist/src/formats/dot/index.d.ts.map +1 -1
- package/dist/src/formats/dot/index.js +2 -1
- package/dist/src/formats/dot/index.js.map +1 -1
- package/dist/src/formats/dot/label-places.d.ts +41 -0
- package/dist/src/formats/dot/label-places.d.ts.map +1 -0
- package/dist/src/formats/dot/label-places.js +185 -0
- package/dist/src/formats/dot/label-places.js.map +1 -0
- package/dist/src/formats/dot/names.d.ts +13 -0
- package/dist/src/formats/dot/names.d.ts.map +1 -1
- package/dist/src/formats/dot/names.js +13 -0
- package/dist/src/formats/dot/names.js.map +1 -1
- package/dist/src/formats/dot/record.d.ts +50 -0
- package/dist/src/formats/dot/record.d.ts.map +1 -0
- package/dist/src/formats/dot/record.js +275 -0
- package/dist/src/formats/dot/record.js.map +1 -0
- package/dist/src/formats/dot/styles.d.ts +72 -2
- package/dist/src/formats/dot/styles.d.ts.map +1 -1
- package/dist/src/formats/dot/styles.js +1500 -119
- package/dist/src/formats/dot/styles.js.map +1 -1
- package/dist/src/formats/gexf/dialog-metrics.d.ts +15 -0
- package/dist/src/formats/gexf/dialog-metrics.d.ts.map +1 -0
- package/dist/src/formats/gexf/dialog-metrics.js +59 -0
- package/dist/src/formats/gexf/dialog-metrics.js.map +1 -0
- package/dist/src/formats/gexf/importer.d.ts +7 -0
- package/dist/src/formats/gexf/importer.d.ts.map +1 -1
- package/dist/src/formats/gexf/importer.js +41 -5
- package/dist/src/formats/gexf/importer.js.map +1 -1
- package/dist/src/formats/gexf/preview.d.ts +77 -0
- package/dist/src/formats/gexf/preview.d.ts.map +1 -0
- package/dist/src/formats/gexf/preview.js +191 -0
- package/dist/src/formats/gexf/preview.js.map +1 -0
- package/dist/src/formats/gexf/schema.d.ts.map +1 -1
- package/dist/src/formats/gexf/schema.js +2 -1
- package/dist/src/formats/gexf/schema.js.map +1 -1
- package/dist/src/formats/gexf/styles.d.ts +58 -31
- package/dist/src/formats/gexf/styles.d.ts.map +1 -1
- package/dist/src/formats/gexf/styles.js +848 -225
- package/dist/src/formats/gexf/styles.js.map +1 -1
- package/dist/src/formats/gml/importer.d.ts +5 -2
- package/dist/src/formats/gml/importer.d.ts.map +1 -1
- package/dist/src/formats/gml/importer.js +258 -71
- package/dist/src/formats/gml/importer.js.map +1 -1
- package/dist/src/formats/gml/index.d.ts +1 -1
- package/dist/src/formats/gml/index.d.ts.map +1 -1
- package/dist/src/formats/gml/index.js +1 -1
- package/dist/src/formats/gml/index.js.map +1 -1
- package/dist/src/formats/gml/positions.d.ts +7 -0
- package/dist/src/formats/gml/positions.d.ts.map +1 -1
- package/dist/src/formats/gml/positions.js +29 -7
- package/dist/src/formats/gml/positions.js.map +1 -1
- package/dist/src/formats/gml/styles.d.ts.map +1 -1
- package/dist/src/formats/gml/styles.js +754 -102
- package/dist/src/formats/gml/styles.js.map +1 -1
- package/dist/src/formats/graphml/styles-plain.d.ts.map +1 -1
- package/dist/src/formats/graphml/styles-plain.js +6 -10
- package/dist/src/formats/graphml/styles-plain.js.map +1 -1
- package/dist/src/formats/graphml/styles-yed.d.ts +21 -15
- package/dist/src/formats/graphml/styles-yed.d.ts.map +1 -1
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- package/dist/src/formats/graphml/styles-yed.js.map +1 -1
- package/dist/src/formats/graphml/styles-yfiles3.d.ts +1 -1
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- package/dist/src/formats/graphml/styles-yfiles3.js.map +1 -1
- package/dist/src/formats/graphml/yfiles.d.ts +3 -3
- package/dist/src/formats/graphml/yfiles.d.ts.map +1 -1
- package/dist/src/formats/graphml/yfiles.js +16 -6
- package/dist/src/formats/graphml/yfiles.js.map +1 -1
- package/dist/src/formats/json/dialect.d.ts +3 -2
- package/dist/src/formats/json/dialect.d.ts.map +1 -1
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- package/dist/src/formats/json/index.js.map +1 -1
- package/dist/src/formats/json/positions.d.ts +5 -2
- package/dist/src/formats/json/positions.d.ts.map +1 -1
- package/dist/src/formats/json/positions.js +20 -4
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import {
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import { STYLE_BLOCK_NAME } from "../../styles/io/block.js";
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import { takeFromBlock } from "../../styles/io/round-trip.js";
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import {
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import {
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import {
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import { plainCell } from "../../styles/plan/resolve.js";
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import { DIALOG_LINE_HEIGHT, dialogWidth } from "./dialog-metrics.js";
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import { dependantColor, drawnLabels, edgeThickness, GephiPreview } from "./preview.js";
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import { NODE_COLUMNS, TEMPORAL_COLUMNS, temporalTableName, VIZ_NAMESPACE } from "./schema.js";
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/**
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const GEPHI_NODE_FILL = "#000000";
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/** The style column marking directed edges, which Gephi draws with an arrow at the target. */
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/** The style column
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const
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/** The style
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const
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/** The style column marking the nodes whose labels Gephi hides where they overlap (node.label.avoidOverlap). */
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const AVOID_OVERLAP_KEY = "label-avoid-overlap";
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/** The style column marking the edges Gephi does not draw (dropped, or merged into a parallel edge). */
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const HIDDEN_KEY = "gephi-hidden";
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/** The style column holding the mix of its end nodes' colors of each edge without a color of its own. */
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const MIXED_COLOR_KEY = "end-colors";
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/** The width property and the style column of the width Gephi draws an edge with from its weight. */
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const WEIGHT_WIDTH = ["width", "weight-width"];
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/** Gephi's node width when a node has no `viz:size` (graphstore NodeImpl size 10, a radius). */
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["ellipse", "disc"],
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* A `viz:color` `hex` value as channels: r, g and b 0..255 and an alpha 0..1
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*
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* A `viz:color` `hex` value as channels: r, g and b 0..255 and an alpha 0..1, read the way Gephi reads it: Java's
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* `Color.decode`, which parses the text as one integer (`Integer.decode`: `#` or `0x` hexadecimal, a leading `0`
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* octal, otherwise decimal; a leading sign allowed) and keeps its low 24 bits, opaque. So `#rrggbb` is the color it
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* names, but `#f80` is `#000f80`, `#4daf4a80` is `#af4a80` and `984ea3` is not a color at all (Gephi draws that node
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* as if it had no color: `gexf-specimen-node-fills-borders`, `color-hex-short`, `color-hex-alpha`, `color-hex-nohash`).
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* @returns `[r, g, b,
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* @returns `[r, g, b, 1]`, or null when Java cannot read it as an int
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*/
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export function canonVizColor(hex) {
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const
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if (
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const m = /^([+-]?)(?:(0x|0X|#)([0-9a-fA-F]+)|(0[0-7]+)|(\d+))$/.exec(hex.trim());
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if (m === null) {
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}
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const
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}
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if (
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const [, sign, , hexDigits, octal, decimal] = m;
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v = Number.parseInt(hexDigits, 16);
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}
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else if (octal !== undefined) {
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v = Number.parseInt(octal, 8);
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}
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else {
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v = Number.parseInt(decimal, 10);
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}
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if (sign === "-") {
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v = -v;
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}
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// Integer.decode accepts -2^31 .. 2^31 - 1 only
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if (v < -2147483648 || v > 2147483647) {
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return null;
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}
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const n =
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return [(n >> 16) & 255, (n >> 8) & 255, n & 255,
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const n = v & 0xffffff;
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return [(n >> 16) & 255, (n >> 8) & 255, n & 255, 1];
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}
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/**
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* A viz column of the snapshot, or null when the column is absent or not viz-derived.
|
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@@ -207,17 +225,23 @@ function readVizColor(viz, color, i) {
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}
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}
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/**
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* Reads one element's viz size (a node's width and height) or thickness (an edge's width).
|
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* Reads one element's viz size (a node's width and height) or thickness (an edge's width). A node's
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* size is a radius, as Gephi and sigma draw it (Gephi's preview: a circle of radius 0.92 x size plus
|
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* a 0.16 x size outline, an outer diameter of 2 x size), so its width and height are twice it.
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* @param viz - the target's reading
|
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|
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* @param i - the element
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*/
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function readVizSize(viz, size, i) {
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const v = canonNumber(plainCell(viz.table.value(size, i)), viz.site(i, "width"));
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|
-
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-
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// Gephi draws a node of viz:size 0 at its default size 10 (gexf-specimen-node-sizes-opacity, size-0)
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if (v !== null && !(v === 0 && viz.target === "node")) {
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239
|
if (viz.target === "node") {
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|
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viz.column("
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viz.column("width")[i] = 2 * v;
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|
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viz.column("height")[i] = 2 * v;
|
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|
+
}
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|
+
else {
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|
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viz.column("width")[i] = v;
|
|
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245
|
}
|
|
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246
|
}
|
|
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247
|
}
|
|
@@ -238,176 +262,730 @@ function readVizShape(viz, shape, i) {
|
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262
|
return typeof raw === "string" && raw.toLowerCase() === "image";
|
|
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263
|
}
|
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264
|
/**
|
|
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|
-
*
|
|
265
|
+
* The edges as Gephi's importer and preview draw them (measured with the Gephi Toolkit 0.11.3:
|
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266
|
+
* `gexf-specimen-edges-lines`, `-p13`, `-p15`, `gexf-specimen-arrows`, `-p6`, `-p7`):
|
|
267
|
+
* - an edge whose own type is against the graph's `defaultedgetype` is dropped (`undirected` in a `directed`
|
|
268
|
+
* graph, `directed` in an `undirected` one); a `mutual` graph, or one with no `defaultedgetype`, keeps every
|
|
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|
+
* edge, an untyped or `mutual` one directed;
|
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|
+
* - edges of one kind between the same ends (either way round for an undirected edge) are merged into the first,
|
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271
|
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* whose weight is their sum;
|
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|
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* - an edge's weight is its `weight` (1 when it has none), or, when an edge attribute named weight is dynamic, its
|
|
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|
+
* value over the earliest interval (0 when it has none);
|
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|
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* - when the smallest weight drawn is 0 or less, every weight is raised by |smallest| + 1.
|
|
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|
+
* An undirected edge of a directed snapshot is two halves here; both take what its first half gets.
|
|
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276
|
* @param snapshot - the graph
|
|
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|
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* @
|
|
277
|
+
* @param gexf - whether the file is a GEXF; another format keeps its own direction, with nothing merged or dropped
|
|
278
|
+
* @returns per edge, what Gephi draws
|
|
244
279
|
*/
|
|
245
|
-
function
|
|
246
|
-
const
|
|
247
|
-
const
|
|
248
|
-
|
|
249
|
-
|
|
250
|
-
|
|
280
|
+
function gephiEdges(snapshot, gexf) {
|
|
281
|
+
const n = snapshot.edgeCount;
|
|
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|
+
const first = firstHalf(snapshot);
|
|
283
|
+
// another format Gephi draws: its own direction, nothing merged or dropped
|
|
284
|
+
if (!gexf) {
|
|
285
|
+
return otherFormatEdges(snapshot);
|
|
286
|
+
}
|
|
287
|
+
const header = gexfDefaultEdgeType(snapshot);
|
|
288
|
+
const dirCol = snapshot.edges.byRole("directed");
|
|
289
|
+
const mutualCol = snapshot.edges.byRole("mutual");
|
|
290
|
+
const kindCol = snapshot.edges.byRole("kind");
|
|
291
|
+
const weightOf = gephiWeight(snapshot);
|
|
292
|
+
const out = {
|
|
293
|
+
directed: new Array(n).fill(false),
|
|
294
|
+
hidden: new Array(n).fill(false),
|
|
295
|
+
weight: new Array(n).fill(1),
|
|
296
|
+
};
|
|
297
|
+
const leaders = new Map();
|
|
298
|
+
const drawnLeaders = [];
|
|
299
|
+
const ownDirection = gexfOwnDirection(header, dirCol, mutualCol);
|
|
300
|
+
for (let e = 0; e < n; e++) {
|
|
301
|
+
const f = first(e);
|
|
302
|
+
if (f !== e) {
|
|
303
|
+
continue;
|
|
304
|
+
}
|
|
305
|
+
// the edge's own type: graph-io records it only when the file mixes directions
|
|
306
|
+
const { ownUndirected, mismatched } = ownDirection(f);
|
|
307
|
+
if (mismatched) {
|
|
308
|
+
out.hidden[f] = true;
|
|
309
|
+
continue;
|
|
310
|
+
}
|
|
311
|
+
// Gephi draws no arrowhead on a self-loop
|
|
312
|
+
const s = snapshot.edgeSource(f);
|
|
313
|
+
const t = snapshot.edgeTarget(f);
|
|
314
|
+
const directed = header !== "undirected" && s !== t && !ownUndirected;
|
|
315
|
+
out.directed[f] = directed;
|
|
316
|
+
const kind = kindCol?.isSet(f) === true ? String(kindCol.value(f)) : "";
|
|
317
|
+
const key = `${kind}\u0000${gephiEndsKey(s, t, directed)}`;
|
|
318
|
+
const leader = leaders.get(key);
|
|
319
|
+
if (leader === undefined) {
|
|
320
|
+
leaders.set(key, f);
|
|
321
|
+
drawnLeaders.push(f);
|
|
322
|
+
out.weight[f] = weightOf(f);
|
|
323
|
+
}
|
|
324
|
+
else {
|
|
325
|
+
out.weight[leader] += weightOf(f);
|
|
326
|
+
out.hidden[f] = true;
|
|
251
327
|
}
|
|
252
328
|
}
|
|
329
|
+
// a loop, not Math.min(...): a spread of every edge overflows the call stack on a large graph
|
|
330
|
+
const smallest = drawnLeaders.reduce((m, f) => Math.min(m, out.weight[f]), Infinity);
|
|
331
|
+
const shift = smallest <= 0 ? 1 - smallest : 0;
|
|
332
|
+
for (let e = 0; e < n; e++) {
|
|
333
|
+
const f = first(e);
|
|
334
|
+
out.directed[e] = out.directed[f];
|
|
335
|
+
out.hidden[e] = out.hidden[f];
|
|
336
|
+
out.weight[e] = out.weight[f] + shift;
|
|
337
|
+
}
|
|
253
338
|
return out;
|
|
254
339
|
}
|
|
255
340
|
/**
|
|
256
|
-
* The
|
|
257
|
-
*
|
|
258
|
-
*
|
|
259
|
-
*
|
|
260
|
-
*
|
|
261
|
-
*
|
|
262
|
-
|
|
263
|
-
|
|
264
|
-
|
|
265
|
-
|
|
266
|
-
|
|
267
|
-
*
|
|
268
|
-
*
|
|
269
|
-
*
|
|
341
|
+
* The ends of an edge as the key Gephi merges parallel edges by: in order for a directed edge, either way round
|
|
342
|
+
* for an undirected one.
|
|
343
|
+
* @param s - the source node index
|
|
344
|
+
* @param t - the target node index
|
|
345
|
+
* @param directed - whether the edge is drawn directed
|
|
346
|
+
* @returns the key
|
|
347
|
+
*/
|
|
348
|
+
function gephiEndsKey(s, t, directed) {
|
|
349
|
+
return directed ? `${String(s)}>${String(t)}` : `${String(Math.min(s, t))}-${String(Math.max(s, t))}`;
|
|
350
|
+
}
|
|
351
|
+
/**
|
|
352
|
+
* A GEXF edge's own type, read from the directed and mutual columns, or from the header when the file did not
|
|
353
|
+
* mix directions (no directed column); an edge whose own type disagrees with the header's is one Gephi never loads.
|
|
354
|
+
* @param header - the file's default edge type
|
|
355
|
+
* @param dirCol - the directed column, or null
|
|
356
|
+
* @param mutualCol - the mutual column, or null
|
|
357
|
+
* @returns per edge index, whether its own type is undirected and whether it disagrees with the header
|
|
358
|
+
*/
|
|
359
|
+
function gexfOwnDirection(header, dirCol, mutualCol) {
|
|
360
|
+
const verdict = (ownUndirected, ownDirected) => ({
|
|
361
|
+
ownUndirected,
|
|
362
|
+
mismatched: (header === "directed" && ownUndirected) || (header === "undirected" && ownDirected),
|
|
363
|
+
});
|
|
364
|
+
return (f) => {
|
|
365
|
+
if (dirCol === null) {
|
|
366
|
+
return verdict(header === "undirected", header !== "undirected");
|
|
367
|
+
}
|
|
368
|
+
const mutual = mutualCol?.value(f) === true;
|
|
369
|
+
return verdict(dirCol.value(f) === false && !mutual, dirCol.value(f) === true && !mutual);
|
|
370
|
+
};
|
|
371
|
+
}
|
|
372
|
+
/**
|
|
373
|
+
* The edges of a format other than GEXF as Gephi draws them: each in its own direction, as thick as its weight (1
|
|
374
|
+
* for a weight of 0 or below, so the edge stays visible).
|
|
375
|
+
* @param snapshot - the graph
|
|
376
|
+
* @returns per edge, what Gephi draws
|
|
377
|
+
*/
|
|
378
|
+
function otherFormatEdges(snapshot) {
|
|
379
|
+
const first = firstHalf(snapshot);
|
|
380
|
+
const weightOf = gephiWeight(snapshot);
|
|
381
|
+
const directed = new Array(snapshot.edgeCount).fill(snapshot.directed);
|
|
382
|
+
const col = snapshot.directed ? snapshot.edges.byRole("directed") : null;
|
|
383
|
+
const weight = [];
|
|
384
|
+
for (let e = 0; e < snapshot.edgeCount; e++) {
|
|
385
|
+
if (col !== null) {
|
|
386
|
+
directed[e] = plainCell(col.value(e)) !== false;
|
|
387
|
+
}
|
|
388
|
+
const w = weightOf(first(e));
|
|
389
|
+
weight.push(w > 0 ? w : 1);
|
|
390
|
+
}
|
|
391
|
+
return { directed, hidden: directed.map(() => false), weight };
|
|
392
|
+
}
|
|
393
|
+
/**
|
|
394
|
+
* The graph's `defaultedgetype` as written, lower case, or null when it wrote none.
|
|
395
|
+
* @param snapshot - the graph
|
|
396
|
+
* @returns the keyword
|
|
397
|
+
*/
|
|
398
|
+
function gexfDefaultEdgeType(snapshot) {
|
|
399
|
+
const written = snapshot.meta.extra.gexf?.defaultedgetype;
|
|
400
|
+
return typeof written === "string" ? written.trim().toLowerCase() : null;
|
|
401
|
+
}
|
|
402
|
+
/**
|
|
403
|
+
* Each edge's weight as Gephi reads it: an edge attribute whose id or title is `weight` and is dynamic is the weight,
|
|
404
|
+
* at its value over the earliest interval (0 for an edge without one: its static `weight` is not read); otherwise
|
|
405
|
+
* the edge's `weight`, 1 for an edge with none.
|
|
406
|
+
* @param snapshot - the graph
|
|
407
|
+
* @returns the weight of an edge
|
|
408
|
+
*/
|
|
409
|
+
function gephiWeight(snapshot) {
|
|
410
|
+
const isWeight = (v) => typeof v === "string" && v.toLowerCase() === "weight";
|
|
411
|
+
const dynamic = snapshot.edges
|
|
412
|
+
.names()
|
|
413
|
+
.map((name) => snapshot.edges.get(name))
|
|
414
|
+
.find((c) => c !== null && c.meta.dynamic && [c.meta.name, c.meta.origin?.id, c.meta.origin?.title].some(isWeight));
|
|
415
|
+
const table = dynamic === undefined || dynamic === null
|
|
416
|
+
? undefined
|
|
417
|
+
: snapshot.extensions.get(temporalTableName("edge", dynamic.meta.name));
|
|
418
|
+
if (table !== undefined) {
|
|
419
|
+
const element = table.get(TEMPORAL_COLUMNS.element);
|
|
420
|
+
const start = table.get(TEMPORAL_COLUMNS.start);
|
|
421
|
+
const value = table.get(TEMPORAL_COLUMNS.value);
|
|
422
|
+
const earliest = new Map();
|
|
423
|
+
for (let row = 0; element !== null && value !== null && row < table.rowCount; row++) {
|
|
424
|
+
const e = element.value(row);
|
|
425
|
+
const at = start?.isSet(row) === true ? start.value(row) : -Infinity;
|
|
426
|
+
const v = Number(value.value(row));
|
|
427
|
+
const seen = earliest.get(e);
|
|
428
|
+
if (Number.isFinite(v) && (seen === undefined || at < seen.start)) {
|
|
429
|
+
earliest.set(e, { start: at, value: v });
|
|
430
|
+
}
|
|
431
|
+
}
|
|
432
|
+
return (e) => earliest.get(e)?.value ?? 0;
|
|
433
|
+
}
|
|
434
|
+
// the snapshot's own weights (the role column exists only when some edge has none), as their shortest decimal
|
|
435
|
+
const weights = explicitWeights(snapshot);
|
|
436
|
+
return (e) => {
|
|
437
|
+
const w = Number(weights.text(e) ?? 1);
|
|
438
|
+
return Number.isFinite(w) ? w : 1;
|
|
439
|
+
};
|
|
440
|
+
}
|
|
441
|
+
/**
|
|
442
|
+
* A node color's channels as Gephi holds them: r, g, b and alpha, 0..255.
|
|
443
|
+
* @param fill - the node's fill, or null for Gephi's default
|
|
444
|
+
* @param opacity - its opacity, or null for opaque
|
|
445
|
+
* @returns the channels
|
|
446
|
+
*/
|
|
447
|
+
function nodeChannels(fill, opacity) {
|
|
448
|
+
const n = Number.parseInt((typeof fill === "string" ? fill : GEPHI_NODE_FILL).slice(1), 16);
|
|
449
|
+
const a = typeof opacity === "number" ? Math.round(opacity * 255) : 255;
|
|
450
|
+
return [(n >> 16) & 255, (n >> 8) & 255, n & 255, a];
|
|
451
|
+
}
|
|
452
|
+
/**
|
|
453
|
+
* `#rrggbb` of three channels.
|
|
454
|
+
* @param c - r, g and b, 0..255
|
|
455
|
+
* @returns the color
|
|
456
|
+
*/
|
|
457
|
+
function hexOf(c) {
|
|
458
|
+
return `#${c
|
|
459
|
+
.slice(0, 3)
|
|
460
|
+
.map((v) => v.toString(16).padStart(2, "0"))
|
|
461
|
+
.join("")}`;
|
|
462
|
+
}
|
|
463
|
+
/**
|
|
464
|
+
* A passthrough rule of a tool default that is itself per element, and its column, when any element takes it.
|
|
465
|
+
* @param out - the target's rules and columns, changed in place
|
|
466
|
+
* @param target - nodes or edges
|
|
467
|
+
* @param pair - the style property and its style column, which is also the rule's id after `<target>.tool.`
|
|
468
|
+
* @param column - the default per element, null where the element has its own value
|
|
469
|
+
* @param reason - why the values are per element
|
|
470
|
+
*/
|
|
471
|
+
function perElementDefault(out, target, pair, column, reason) {
|
|
472
|
+
const [property, key] = pair;
|
|
473
|
+
const elements = column.filter((v) => v !== null).length;
|
|
474
|
+
if (elements === 0) {
|
|
475
|
+
return;
|
|
476
|
+
}
|
|
477
|
+
out.columns.set(key, column);
|
|
478
|
+
out.rules.push({
|
|
479
|
+
id: `${target}.tool.${key}`,
|
|
480
|
+
target,
|
|
481
|
+
role: "passthrough",
|
|
482
|
+
origin: "tool",
|
|
483
|
+
where: { has: { style: key } },
|
|
484
|
+
map: { [property]: { kind: "passthrough", by: { style: key } } },
|
|
485
|
+
facts: { elements, reason },
|
|
486
|
+
});
|
|
487
|
+
}
|
|
488
|
+
/**
|
|
489
|
+
* A tool rule that sets the same values on every element.
|
|
490
|
+
* @param out - the target's rules, changed in place
|
|
491
|
+
* @param target - nodes or edges
|
|
492
|
+
* @param id - the rule's id after `<target>.tool.`
|
|
493
|
+
* @param set - the values
|
|
494
|
+
*/
|
|
495
|
+
function everyElement(out, target, id, set) {
|
|
496
|
+
if (Object.keys(set).length > 0) {
|
|
497
|
+
out.rules.push({
|
|
498
|
+
id: `${target}.tool.${id}`,
|
|
499
|
+
target,
|
|
500
|
+
role: "group",
|
|
501
|
+
origin: "tool",
|
|
502
|
+
where: { all: true },
|
|
503
|
+
set,
|
|
504
|
+
});
|
|
505
|
+
}
|
|
506
|
+
}
|
|
507
|
+
/**
|
|
508
|
+
* The rules Gephi's preview defaults (DefaultPreset) make per element, as its SVG export draws every GEXF and GraphML
|
|
509
|
+
* file: each node outlined in a darker shade of its fill, 0.08 of its width wide, with its label 0.3 of its width
|
|
510
|
+
* tall; each edge in the mix of its two end nodes' colors and alphas, as thick as its weight, with an arrow at the
|
|
511
|
+
* target of a directed edge. An element's own value is kept (a file graphty wrote states every one). A GEXF drawing
|
|
512
|
+
* also merges and drops edges as Gephi's importer does (gephiEdges()) and follows the Preview settings it was drawn
|
|
513
|
+
* with.
|
|
270
514
|
* @param snapshot - the graph
|
|
271
|
-
* @param
|
|
272
|
-
* @param
|
|
515
|
+
* @param nodes - each node's fill, opacity and width
|
|
516
|
+
* @param edges - each edge's own color and width
|
|
273
517
|
* @param budget - the work budget
|
|
518
|
+
* @param gexf - the GEXF drawing, or undefined for another format Gephi draws
|
|
274
519
|
* @returns the node and edge rules and the style columns they read
|
|
275
520
|
*/
|
|
276
|
-
export function gephiRules(snapshot,
|
|
277
|
-
|
|
521
|
+
export function gephiRules(snapshot, nodes, edges, budget, gexf) {
|
|
522
|
+
const preview = gexf?.preview ?? new GephiPreview();
|
|
523
|
+
const node = { rules: [], columns: new Map() };
|
|
524
|
+
const edge = { rules: [], columns: new Map() };
|
|
525
|
+
budget.spend("node", snapshot.nodeCount);
|
|
526
|
+
budget.spend("edge", snapshot.edgeCount);
|
|
527
|
+
const channels = Array.from({ length: snapshot.nodeCount }, (_, i) => nodeChannels(nodes.fill?.[i], nodes.fillOpacity?.[i]));
|
|
528
|
+
const labelSizes = nodeRules(node, snapshot, channels, nodes, preview);
|
|
529
|
+
edgeRules(edge, snapshot, channels, nodes, edges, gexf, preview);
|
|
530
|
+
nodeLabelRules(node, channels, labelSizes, preview, gexf?.overlapSettled === true);
|
|
531
|
+
labelBox(node, channels, nodes, preview);
|
|
532
|
+
return { node, edge };
|
|
278
533
|
}
|
|
279
|
-
/** Preview's "darker" border: each channel of the fill times this (`DependantColor.java` line 55). */
|
|
280
|
-
const GEPHI_BORDER_DARKEN = 0.498;
|
|
281
|
-
/** Preview's border width as a share of the node's drawn width (`SizeUtils.java` lines 11, 37). */
|
|
282
|
-
const GEPHI_BORDER_SHARE = 0.08;
|
|
283
|
-
/** Gephi's node size when a node has none (`AbstractProcessor.java` lines 195-198). */
|
|
284
|
-
const GEPHI_NODE_SIZE = 10;
|
|
285
534
|
/**
|
|
286
|
-
*
|
|
287
|
-
*
|
|
288
|
-
*
|
|
535
|
+
* A node's width, twice its Gephi size.
|
|
536
|
+
* @param nodes - the node values
|
|
537
|
+
* @param i - the node
|
|
538
|
+
* @returns the width
|
|
289
539
|
*/
|
|
290
|
-
|
|
540
|
+
function nodeWidth(nodes, i) {
|
|
541
|
+
const w = nodes.width?.[i];
|
|
542
|
+
return typeof w === "number" ? w : GEPHI_NODE_WIDTH;
|
|
543
|
+
}
|
|
291
544
|
/**
|
|
292
|
-
* The node rules
|
|
545
|
+
* The node rules: opacity, border and label size.
|
|
546
|
+
* @param node - the node rules, changed in place
|
|
293
547
|
* @param snapshot - the graph
|
|
294
|
-
* @param
|
|
295
|
-
* @param
|
|
296
|
-
* @
|
|
297
|
-
|
|
298
|
-
|
|
299
|
-
|
|
300
|
-
const
|
|
301
|
-
|
|
302
|
-
|
|
303
|
-
|
|
304
|
-
const
|
|
305
|
-
const
|
|
306
|
-
|
|
307
|
-
|
|
308
|
-
|
|
309
|
-
const
|
|
310
|
-
|
|
311
|
-
|
|
312
|
-
|
|
313
|
-
|
|
314
|
-
|
|
315
|
-
|
|
316
|
-
|
|
317
|
-
|
|
318
|
-
|
|
319
|
-
|
|
320
|
-
|
|
321
|
-
|
|
322
|
-
|
|
323
|
-
|
|
324
|
-
|
|
325
|
-
|
|
326
|
-
|
|
327
|
-
|
|
328
|
-
|
|
329
|
-
|
|
330
|
-
|
|
331
|
-
|
|
332
|
-
|
|
333
|
-
|
|
334
|
-
|
|
548
|
+
* @param channels - each node's color channels
|
|
549
|
+
* @param nodes - the node values
|
|
550
|
+
* @param preview - the settings
|
|
551
|
+
* @returns each node's label size
|
|
552
|
+
*/
|
|
553
|
+
function nodeRules(node, snapshot, channels, nodes, preview) {
|
|
554
|
+
const nodeIndices = Array.from({ length: snapshot.nodeCount }, (_, i) => i);
|
|
555
|
+
// a node's alpha is drawn only under node.per.node.opacity, times node.opacity, on its fill and its border alike:
|
|
556
|
+
// a node not opaque is a fill of radius 0.84 s and a separate ring out to s, both at that alpha
|
|
557
|
+
const perNode = preview.on("node.per.node.opacity");
|
|
558
|
+
const alpha = channels.map((c) => ((perNode ? c[3] : 255) / 255) * (preview.num("node.opacity") / 100));
|
|
559
|
+
const translucent = alpha.map((a) => (a < 1 ? a : null));
|
|
560
|
+
perElementDefault(node, "node", ["fillOpacity", "preview-opacity"], translucent, "NODE_OPACITY");
|
|
561
|
+
perElementDefault(node, "node", ["borderOpacity", "preview-border-opacity"], translucent, "NODE_OPACITY");
|
|
562
|
+
// NodeRenderer: the border is DependantColor DARKER by default, half of each channel (+-1 from Gephi's float math)
|
|
563
|
+
const borderMode = preview.text("node.border.color");
|
|
564
|
+
perElementDefault(node, "node", ["borderColor", "border-shade"], channels.map((c) => hexOf(dependantColor(borderMode, c) ?? c.map((v) => Math.floor(v / 2)))), "NODE_FILL_SHADE");
|
|
565
|
+
// A node of size s is a circle of radius 0.92 s with a 0.16 s border: 0.08 of its 2 s width, or node.border.width
|
|
566
|
+
// under node.border.fixed. Its label is the label font's size in proportion to the node's, round(size / 20 * s)
|
|
567
|
+
// (NODE_LABEL_PROPORTIONAL_SIZE; Arial 12 makes round(0.6 s)), never under 1.
|
|
568
|
+
const fixed = preview.on("node.border.fixed") ? preview.num("node.border.width") : null;
|
|
569
|
+
perElementDefault(node, "node", ["borderWidth", "size-border"], nodeIndices.map((i) => {
|
|
570
|
+
// a fixed border is no wider than the node's size (radius): a size-3 node takes a border of 4 as 3
|
|
571
|
+
return fixed === null ? 0.08 * nodeWidth(nodes, i) : Math.min(fixed, nodeWidth(nodes, i) / 2);
|
|
572
|
+
}), "NODE_SIZE");
|
|
573
|
+
const font = preview.font("node");
|
|
574
|
+
const labelSizes = nodeIndices.map((i) => preview.on("node.label.proportinalSize")
|
|
575
|
+
? Math.max(1, Math.round((font.size / 40) * nodeWidth(nodes, i)))
|
|
576
|
+
: font.size);
|
|
577
|
+
perElementDefault(node, "node", ["labelSize", "size-label"], labelSizes, "NODE_SIZE");
|
|
578
|
+
return labelSizes;
|
|
579
|
+
}
|
|
580
|
+
/**
|
|
581
|
+
* The node label rules the Preview settings make beyond the size: color, outline, font and overlap avoidance.
|
|
582
|
+
* @param node - the node rules, changed in place
|
|
583
|
+
* @param channels - each node's color channels
|
|
584
|
+
* @param sizes - each node's label size
|
|
585
|
+
* @param preview - the settings
|
|
586
|
+
* @param settled - whether the labels overlap avoidance hides are already left out
|
|
587
|
+
*/
|
|
588
|
+
function nodeLabelRules(node, channels, sizes, preview, settled) {
|
|
589
|
+
const color = preview.text("node.label.color");
|
|
590
|
+
if (color !== "#000000" && color !== "original") {
|
|
591
|
+
perElementDefault(node, "node", ["labelColor", "preview-label-color"], channels.map((c) => hexOf(dependantColor(color, c) ?? [0, 0, 0])), "NODE_LABEL_COLOR");
|
|
592
|
+
}
|
|
593
|
+
labelOutline(node, "node", channels, sizes, preview);
|
|
594
|
+
const font = preview.font("node");
|
|
595
|
+
everyElement(node, "node", "preview-label", fontValues(font, preview.on("node.label.customFont")));
|
|
596
|
+
// ponytail: where a node has no stored position Gephi's own grid (gephiOverlapHidden()) cannot be run; avoiding
|
|
597
|
+
// overlap, larger first, is that test without the grid's rounding. A rule only while it is on: graphty-element
|
|
598
|
+
// has no value that turns a lower rule's overlap avoidance off again.
|
|
599
|
+
if (preview.on("node.label.avoidOverlap") && !settled) {
|
|
600
|
+
node.columns.set(AVOID_OVERLAP_KEY, sizes.map(() => true));
|
|
601
|
+
node.rules.push({
|
|
602
|
+
id: "node.tool.label-avoid-overlap",
|
|
335
603
|
target: "node",
|
|
336
|
-
role: "
|
|
604
|
+
role: "group",
|
|
337
605
|
origin: "tool",
|
|
338
|
-
where: { has: {
|
|
339
|
-
|
|
340
|
-
facts: { reason: "NODE_NAME" },
|
|
606
|
+
where: { has: { style: AVOID_OVERLAP_KEY } },
|
|
607
|
+
set: { labelAvoidOverlap: true },
|
|
341
608
|
});
|
|
342
609
|
}
|
|
343
|
-
return { rules, columns };
|
|
344
610
|
}
|
|
345
611
|
/**
|
|
346
|
-
*
|
|
612
|
+
* Gephi's alpha for a Preview opacity in percent: Java's `Color` keeps it as one of 256 steps, cut down to a whole
|
|
613
|
+
* step (`labels-p10`'s 30 is drawn 76 / 255, not 77).
|
|
614
|
+
* @param percent - the opacity, 0 to 100
|
|
615
|
+
* @returns the alpha, 0 to 1
|
|
616
|
+
*/
|
|
617
|
+
function gephiAlpha(percent) {
|
|
618
|
+
// ponytail: 1e-9 keeps a step that floating point lands a hair under (0.4 x 255) on its step
|
|
619
|
+
return Math.floor((Math.min(Math.max(percent, 0), 100) / 100) * 255 + 1e-9) / 255;
|
|
620
|
+
}
|
|
621
|
+
/**
|
|
622
|
+
* The label box of `node.label.box`: Gephi strokes an unfilled box round the label, 0.08 of the node's size wide, in
|
|
623
|
+
* the color `node.label.box.color` derives from the node's and at `node.label.box.opacity` (`gexf-specimen-labels-p11`,
|
|
624
|
+
* `-p12`, `-p13`, `-p20`, `-p21`). The box is the text's own bounds -- its advance width and its font's ascent plus
|
|
625
|
+
* descent, with no leading -- grown by the stroke's width, so the stroke's inner edge lies on the text's bounds
|
|
626
|
+
* (`labels-p11`: a 15 px "Label" is 40.47 x 17.46 inside a 2.0 stroke): no padding, a line height of 1.
|
|
627
|
+
* @param node - the node rules, changed in place
|
|
628
|
+
* @param channels - each node's color channels
|
|
629
|
+
* @param nodes - the node values
|
|
630
|
+
* @param preview - the settings
|
|
631
|
+
*/
|
|
632
|
+
function labelBox(node, channels, nodes, preview) {
|
|
633
|
+
if (!preview.on("node.label.box")) {
|
|
634
|
+
return;
|
|
635
|
+
}
|
|
636
|
+
const mode = preview.text("node.label.box.color");
|
|
637
|
+
perElementDefault(node, "node", ["labelBorderColor", "preview-box-color"], channels.map((c) => hexOf(dependantColor(mode, c) ?? c)), "LABEL_BOX");
|
|
638
|
+
perElementDefault(node, "node", ["labelBorderWidth", "preview-box-width"], channels.map((_, i) => 0.04 * nodeWidth(nodes, i)), "LABEL_BOX");
|
|
639
|
+
everyElement(node, "node", "preview-box", {
|
|
640
|
+
labelBorderOpacity: gephiAlpha(preview.num("node.label.box.opacity")),
|
|
641
|
+
labelPadding: 0,
|
|
642
|
+
labelLineHeight: 1,
|
|
643
|
+
});
|
|
644
|
+
}
|
|
645
|
+
/**
|
|
646
|
+
* The label font values a custom font sets.
|
|
647
|
+
* @param font - the font
|
|
648
|
+
* @param custom - whether the font is custom
|
|
649
|
+
* @returns the values
|
|
650
|
+
*/
|
|
651
|
+
function fontValues(font, custom) {
|
|
652
|
+
if (!custom) {
|
|
653
|
+
return {};
|
|
654
|
+
}
|
|
655
|
+
return {
|
|
656
|
+
labelFont: font.family,
|
|
657
|
+
...(font.bold ? { labelWeight: "bold" } : {}),
|
|
658
|
+
...(font.italic ? { labelItalic: true } : {}),
|
|
659
|
+
};
|
|
660
|
+
}
|
|
661
|
+
/**
|
|
662
|
+
* The label outline of `<target>.label.outline.size` and `.color`: a stroke size / 32 of the label's size wide, round
|
|
663
|
+
* each letter, in the color its mode derives from the element's color and at `.outline.opacity` (Gephi's default 80;
|
|
664
|
+
* `gexf-specimen-labels-p9`, `-p10`, `-p17` .. `-p19`, `edge-labels-p5`, `-p6`).
|
|
665
|
+
* @param out - the rules, changed in place
|
|
666
|
+
* @param target - nodes or edges
|
|
667
|
+
* @param colors - each element's color channels
|
|
668
|
+
* @param sizes - each element's label size
|
|
669
|
+
* @param preview - the settings
|
|
670
|
+
*/
|
|
671
|
+
function labelOutline(out, target, colors, sizes, preview) {
|
|
672
|
+
const size = preview.num(`${target}.label.outline.size`);
|
|
673
|
+
if (size <= 0) {
|
|
674
|
+
return;
|
|
675
|
+
}
|
|
676
|
+
const mode = preview.text(`${target}.label.outline.color`);
|
|
677
|
+
perElementDefault(out, target, ["labelOutlineWidth", "preview-outline-width"], sizes.map((s) => (size / 32) * s), "LABEL_OUTLINE");
|
|
678
|
+
perElementDefault(out, target, ["labelOutlineColor", "preview-outline-color"], colors.map((c) => hexOf(dependantColor(mode, c) ?? [255, 255, 255])), "LABEL_OUTLINE");
|
|
679
|
+
everyElement(out, target, "preview-outline", {
|
|
680
|
+
labelOutlineOpacity: gephiAlpha(preview.num(`${target}.label.outline.opacity`)),
|
|
681
|
+
});
|
|
682
|
+
}
|
|
683
|
+
/**
|
|
684
|
+
* The node labels Gephi's label overlap avoidance hides (`node.label.avoidOverlap`, Gephi 0.11
|
|
685
|
+
* NodeLabelRenderer.preProcess): largest font first, each label's box -- its Dialog advance width by its line height,
|
|
686
|
+
* centered on its node -- marks the cells of a `node.label.overlapGridSize` grid over the nodes' bounds, and a label
|
|
687
|
+
* any of whose cells an earlier one marked is hidden. A label's font size is 12 x 0.05 x its node's size (proportional
|
|
688
|
+
* size) or the font's, measured in the float size of the last label of the same whole size (Gephi's font cache),
|
|
689
|
+
* its labels taken largest node first.
|
|
690
|
+
* Decided where every node has a stored position; elsewhere graphty-element lays the graph out, so null.
|
|
347
691
|
* @param snapshot - the graph
|
|
348
|
-
* @param
|
|
349
|
-
* @param
|
|
350
|
-
* @param
|
|
351
|
-
* @returns
|
|
352
|
-
*/
|
|
353
|
-
function
|
|
354
|
-
const
|
|
355
|
-
|
|
356
|
-
|
|
357
|
-
|
|
358
|
-
|
|
359
|
-
|
|
692
|
+
* @param labels - each node's label as drawn
|
|
693
|
+
* @param widths - each node's width (twice its size), or undefined for Gephi's default
|
|
694
|
+
* @param preview - the settings
|
|
695
|
+
* @returns whether each label is hidden, or null
|
|
696
|
+
*/
|
|
697
|
+
function gephiOverlapHidden(snapshot, labels, widths, preview) {
|
|
698
|
+
const centers = gephiCenters(snapshot);
|
|
699
|
+
if (centers.includes(null)) {
|
|
700
|
+
return null;
|
|
701
|
+
}
|
|
702
|
+
const f = Math.fround;
|
|
703
|
+
const grid = preview.num("node.label.overlapGridSize");
|
|
704
|
+
const proportional = preview.on("node.label.proportinalSize");
|
|
705
|
+
const base = f(preview.font("node").size * preview.num("node.label.scale"));
|
|
706
|
+
const nodeSizes = centers.map((_, i) => {
|
|
707
|
+
const w = widths?.[i];
|
|
708
|
+
return f((typeof w === "number" ? w : GEPHI_NODE_WIDTH) / 2);
|
|
709
|
+
});
|
|
710
|
+
const sizes = nodeSizes.map((nodeSize) => proportional ? f(f(base * nodeSize) * f(0.05)) : f(base * f(1 + f(nodeSize * f(0.00001)))));
|
|
711
|
+
// Gephi's label items come largest node first (file order among equals; measured on six corpus files)
|
|
712
|
+
const items = sizes.map((_, i) => i).sort((a, b) => nodeSizes[b] - nodeSizes[a]);
|
|
713
|
+
// Font.deriveFont(size).getSize() rounds; the cache keeps the last font of each whole size
|
|
714
|
+
const cached = new Map();
|
|
715
|
+
items.forEach((i) => cached.set(Math.round(sizes[i]), sizes[i]));
|
|
716
|
+
// NodeItem Y is the file's y turned over
|
|
717
|
+
const at = centers.map((c) => [c?.[0] ?? 0, -(c?.[1] ?? 0)]);
|
|
718
|
+
// loops, not Math.min(...): a spread of every node overflows the call stack on a large graph
|
|
719
|
+
let [loX, loY, hiX, hiY] = [Infinity, Infinity, -Infinity, -Infinity];
|
|
720
|
+
for (const [x, y] of at) {
|
|
721
|
+
[loX, loY, hiX, hiY] = [Math.min(loX, x), Math.min(loY, y), Math.max(hiX, x), Math.max(hiY, y)];
|
|
722
|
+
}
|
|
723
|
+
const [minX, minY] = [loX - grid, loY - grid];
|
|
724
|
+
const cols = Math.ceil((hiX + grid - minX) / grid);
|
|
725
|
+
const rows = Math.ceil((hiY + grid - minY) / grid);
|
|
726
|
+
const taken = new Set();
|
|
727
|
+
const hidden = labels.map(() => false);
|
|
728
|
+
const order = [...items].sort((a, b) => sizes[b] - sizes[a]);
|
|
729
|
+
for (const i of order) {
|
|
730
|
+
const label = labels[i];
|
|
731
|
+
if (typeof label !== "string" || label.trim() === "") {
|
|
732
|
+
continue;
|
|
733
|
+
}
|
|
734
|
+
const size = cached.get(Math.round(sizes[i])) ?? sizes[i];
|
|
735
|
+
const half = [(dialogWidth(label) * size) / 2, (DIALOG_LINE_HEIGHT * size) / 2];
|
|
736
|
+
const cells = gridCells({ min: [minX, minY], size: grid, cols, rows }, [at[i][0] - half[0], at[i][1] - half[1]], [at[i][0] + half[0], at[i][1] + half[1]]);
|
|
737
|
+
if (cells.some((k) => taken.has(k))) {
|
|
738
|
+
hidden[i] = true;
|
|
739
|
+
}
|
|
740
|
+
else {
|
|
741
|
+
cells.forEach((k) => taken.add(k));
|
|
742
|
+
}
|
|
743
|
+
}
|
|
744
|
+
return hidden;
|
|
745
|
+
}
|
|
746
|
+
/**
|
|
747
|
+
* The cells of a grid a box covers, as Gephi's label grid counts them (each corner's cell truncated, kept on the grid).
|
|
748
|
+
* @param grid - the grid: its lowest corner, cell size and cell counts
|
|
749
|
+
* @param grid.min - its lowest x and y
|
|
750
|
+
* @param grid.size - its cell size
|
|
751
|
+
* @param grid.cols - its columns
|
|
752
|
+
* @param grid.rows - its rows
|
|
753
|
+
* @param lo - the box's lowest x and y
|
|
754
|
+
* @param hi - the box's highest x and y
|
|
755
|
+
* @returns the cell indices, row by row
|
|
756
|
+
*/
|
|
757
|
+
function gridCells(grid, lo, hi) {
|
|
758
|
+
const cell = (v, axis) => Math.min((axis === 0 ? grid.cols : grid.rows) - 1, Math.max(0, Math.trunc((v - grid.min[axis]) / grid.size)));
|
|
759
|
+
const cells = [];
|
|
760
|
+
for (let r = cell(lo[1], 1); r <= cell(hi[1], 1); r++) {
|
|
761
|
+
for (let c = cell(lo[0], 0); c <= cell(hi[0], 0); c++) {
|
|
762
|
+
cells.push(r * grid.cols + c);
|
|
763
|
+
}
|
|
764
|
+
}
|
|
765
|
+
return cells;
|
|
766
|
+
}
|
|
767
|
+
/** Gephi's `edge.arc-curveness`: a curved edge is an arc of radius its nodes' distance over it (code only, 1.2). */
|
|
768
|
+
const GEPHI_ARC_CURVENESS = 1.2;
|
|
769
|
+
/**
|
|
770
|
+
* Each node's stored center, its viz:position; null without one (graphty-element lays such a node out, where Gephi
|
|
771
|
+
* would put it at (0, 0)).
|
|
772
|
+
* @param snapshot - the graph
|
|
773
|
+
* @returns x and y by node
|
|
774
|
+
*/
|
|
775
|
+
function gephiCenters(snapshot) {
|
|
776
|
+
const position = snapshot.nodes.byRole("position");
|
|
777
|
+
return Array.from({ length: snapshot.nodeCount }, (_, i) => {
|
|
778
|
+
const v = position?.isSet(i) === true ? position.value(i) : null;
|
|
779
|
+
return v === null ? null : [v[0] || 0, v[1] || 0];
|
|
780
|
+
});
|
|
781
|
+
}
|
|
782
|
+
/**
|
|
783
|
+
* The curved edges Gephi draws no line for: its arc (radius distance / 1.2) is cut back at each end by a chord as long
|
|
784
|
+
* as that end's node radius (its size), plus `edge.radius`, plus at the target of a directed edge its arrowhead
|
|
785
|
+
* (`arrow.size` x its thickness); where the two cuts meet or pass each other, or a cut is longer than the arc, the
|
|
786
|
+
* nodes swallow the edge and no line is drawn (Gephi 0.11 EdgeRenderer.CurvedEdgeRenderer.Helper,
|
|
787
|
+
* computeTruncateAngle; gexf-cns-wos: 24 edges between overlapping nodes). Its arrowhead is still drawn, unless its
|
|
788
|
+
* nodes are at one place (ArrowRenderer).
|
|
789
|
+
* @param snapshot - the graph
|
|
790
|
+
* @param nodes - the node values (their widths)
|
|
791
|
+
* @param directed - whether each edge is drawn directed
|
|
792
|
+
* @param thickness - each edge's drawn thickness
|
|
793
|
+
* @param preview - the settings
|
|
794
|
+
* @returns for each edge, "line" when only its line is swallowed, "all" when its nodes are at one place, else null
|
|
795
|
+
*/
|
|
796
|
+
function swallowedEdges(snapshot, nodes, directed, thickness, preview) {
|
|
797
|
+
const centers = gephiCenters(snapshot);
|
|
798
|
+
const edgeRadius = preview.num("edge.radius");
|
|
799
|
+
const arrowSize = preview.num("arrow.size");
|
|
800
|
+
const arc = 2 * Math.asin(Math.min(1, GEPHI_ARC_CURVENESS / 2));
|
|
801
|
+
return Array.from({ length: snapshot.edgeCount }, (_, e) => {
|
|
802
|
+
const [a, b] = [snapshot.edgeSource(e), snapshot.edgeTarget(e)];
|
|
803
|
+
const [pa, pb] = [centers[a], centers[b]];
|
|
804
|
+
if (a === b || pa === null || pb === null) {
|
|
805
|
+
return null;
|
|
806
|
+
}
|
|
807
|
+
const d = Math.hypot(pb[0] - pa[0], pb[1] - pa[1]);
|
|
808
|
+
if (d === 0) {
|
|
809
|
+
return "all";
|
|
810
|
+
}
|
|
811
|
+
const r = d / GEPHI_ARC_CURVENESS;
|
|
812
|
+
// the angle a cut of chord length c takes off the arc; past the arc's length, more than the whole arc
|
|
813
|
+
const cut = (c) => c >= r * arc ? Infinity : 2 * Math.atan2(c / 2, Math.sqrt(r * r - (c / 2) * (c / 2)));
|
|
814
|
+
const source = edgeRadius + nodeWidth(nodes, a) / 2;
|
|
815
|
+
const target = edgeRadius + nodeWidth(nodes, b) / 2 + (directed[e] ? arrowSize * thickness[e] : 0);
|
|
816
|
+
return cut(source) + cut(target) >= arc ? "line" : null;
|
|
817
|
+
});
|
|
818
|
+
}
|
|
819
|
+
/** How many points a Gephi self-loop's circle is drawn through. */
|
|
820
|
+
const SELF_LOOP_STEPS = 96;
|
|
821
|
+
/**
|
|
822
|
+
* Gephi's self-loops as bends round their node: a circle up and to the right of it, centered `r` right of and `r`
|
|
823
|
+
* above the node's center, of radius `r` = half the node's size (a radius) plus a third of the loop's stroke, which is
|
|
824
|
+
* 1.3 times the edge's weight (gephi PreviewPlugin EdgeRenderer, SelfLoopEdgeRenderer; measured on the GEXF specimen
|
|
825
|
+
* sheets and gexf-graphology-rio: r = 0.5435 x the drawn radius + 0.33 x the stroke). The circle runs from the side
|
|
826
|
+
* facing the node all the way round; its part inside the node is not drawn.
|
|
827
|
+
* @param snapshot - the graph
|
|
828
|
+
* @param thickness - each edge's drawn thickness
|
|
829
|
+
* @param hidden - whether each edge is not drawn
|
|
830
|
+
* @returns each loop's bends, as fractions of its node's half size; null for any other edge
|
|
831
|
+
*/
|
|
832
|
+
function selfLoopBends(snapshot, thickness, hidden) {
|
|
833
|
+
const sizes = vizColumn(snapshot, "node", "size");
|
|
834
|
+
const sizeOf = (n) => {
|
|
835
|
+
const v = sizes === null ? null : Number(plainCell(snapshot.nodes.value(sizes, n)));
|
|
836
|
+
return v !== null && Number.isFinite(v) && v > 0 ? v : GEPHI_NODE_WIDTH / 2;
|
|
837
|
+
};
|
|
838
|
+
const fraction = (v) => String(Math.round(v * 1e4) / 1e4);
|
|
839
|
+
return Array.from({ length: snapshot.edgeCount }, (_, e) => {
|
|
840
|
+
const n = snapshot.edgeSource(e);
|
|
841
|
+
if (n !== snapshot.edgeTarget(e) || hidden[e]) {
|
|
842
|
+
return null;
|
|
843
|
+
}
|
|
844
|
+
const size = sizeOf(n);
|
|
845
|
+
const r = (0.5 * size + 0.33 * SELF_LOOP_THICKNESS * thickness[e]) / size;
|
|
846
|
+
const points = [];
|
|
847
|
+
for (let k = 0; k <= SELF_LOOP_STEPS; k++) {
|
|
848
|
+
// from the point facing the node's center (225 degrees), clockwise all the way round
|
|
849
|
+
const a = (5 * Math.PI) / 4 - (2 * Math.PI * k) / SELF_LOOP_STEPS;
|
|
850
|
+
points.push(`${fraction(r + r * Math.cos(a))},${fraction(r + r * Math.sin(a))}`);
|
|
851
|
+
}
|
|
852
|
+
return points.join(" ");
|
|
853
|
+
});
|
|
854
|
+
}
|
|
855
|
+
/**
|
|
856
|
+
* The edge rules: arrows, thickness, the edges not drawn, color and opacity, curves and labels.
|
|
857
|
+
* @param edge - the edge rules, changed in place
|
|
858
|
+
* @param snapshot - the graph
|
|
859
|
+
* @param channels - each node's color channels
|
|
860
|
+
* @param nodes - the node values (their widths)
|
|
861
|
+
* @param edges - each edge's own color and width
|
|
862
|
+
* @param gexf - the GEXF drawing, or undefined
|
|
863
|
+
* @param preview - the settings
|
|
864
|
+
*/
|
|
865
|
+
function edgeRules(edge, snapshot, channels, nodes, edges, gexf, preview) {
|
|
866
|
+
const drawn = gephiEdges(snapshot, gexf !== undefined);
|
|
867
|
+
const arrowSize = preview.num("arrow.size");
|
|
868
|
+
if (drawn.directed.some(Boolean) && arrowSize > 0) {
|
|
869
|
+
edge.columns.set(DIRECTED_KEY, drawn.directed.map((d) => (d ? true : null)));
|
|
870
|
+
// arrow.size scales the arrowhead from its default 3 (gexf-specimen-arrows-p2); 0 draws none (-p3)
|
|
871
|
+
edge.rules.push({
|
|
360
872
|
id: "edge.tool.arrow",
|
|
361
873
|
target: "edge",
|
|
362
874
|
role: "group",
|
|
363
875
|
origin: "tool",
|
|
364
876
|
where: { has: { style: DIRECTED_KEY } },
|
|
365
|
-
set: { targetArrow: "triangle" },
|
|
877
|
+
set: { targetArrow: "triangle", ...(arrowSize === 3 ? {} : { arrowSize: arrowSize / 3 }) },
|
|
366
878
|
});
|
|
367
879
|
}
|
|
368
|
-
//
|
|
369
|
-
|
|
370
|
-
|
|
371
|
-
|
|
372
|
-
|
|
373
|
-
|
|
374
|
-
|
|
375
|
-
//
|
|
376
|
-
|
|
377
|
-
|
|
378
|
-
|
|
379
|
-
|
|
380
|
-
|
|
381
|
-
|
|
382
|
-
const
|
|
383
|
-
|
|
880
|
+
// Gephi draws an edge as thick as its weight (gephiEdges(): merged and shifted); a width of its own is the file's
|
|
881
|
+
const hidden = preview.on("edge.show") ? drawn.hidden : drawn.hidden.map(() => true);
|
|
882
|
+
const thickness = edgeThickness(drawn.weight, hidden.map((h) => !h), preview);
|
|
883
|
+
perElementDefault(edge, "edge", WEIGHT_WIDTH,
|
|
884
|
+
// Gephi's self-loop is 1.3 times as thick (measured: weight 1 draws 1.3, 3.25 draws 4.225)
|
|
885
|
+
withoutOwn(edges.width, snapshot.edgeCount, (e) => snapshot.edgeSource(e) === snapshot.edgeTarget(e) ? SELF_LOOP_THICKNESS * thickness[e] : thickness[e]), "EDGE_WEIGHT");
|
|
886
|
+
perElementDefault(edge, "edge", ["bends", "self-loop"], selfLoopBends(snapshot, thickness, hidden), "NODE_SIZE");
|
|
887
|
+
// a curved edge its nodes (and its arrowhead) swallow draws no line; its arrowhead is still drawn
|
|
888
|
+
const swallowed = preview.on("edge.curved")
|
|
889
|
+
? swallowedEdges(snapshot, nodes, drawn.directed, thickness, preview)
|
|
890
|
+
: hidden.map(() => null);
|
|
891
|
+
// the edges Gephi does not draw: one of another direction than the graph's, one merged into a parallel edge, or a
|
|
892
|
+
// swallowed one with no arrowhead to keep
|
|
893
|
+
hidden.forEach((h, e) => {
|
|
894
|
+
const arrow = drawn.directed[e] && arrowSize > 0 && swallowed[e] === "line";
|
|
895
|
+
hidden[e] = h || (swallowed[e] !== null && !arrow);
|
|
384
896
|
});
|
|
385
|
-
|
|
386
|
-
|
|
387
|
-
|
|
388
|
-
|
|
389
|
-
id: "edge.tool.weight-width",
|
|
897
|
+
if (hidden.some(Boolean)) {
|
|
898
|
+
edge.columns.set(HIDDEN_KEY, hidden.map((h) => (h ? true : null)));
|
|
899
|
+
edge.rules.push({
|
|
900
|
+
id: "edge.tool.gephi-hidden",
|
|
390
901
|
target: "edge",
|
|
391
|
-
role: "
|
|
902
|
+
role: "group",
|
|
392
903
|
origin: "tool",
|
|
393
|
-
where: { has: { style:
|
|
394
|
-
|
|
395
|
-
facts: { elements: unsized, reason: "EDGE_WEIGHT" },
|
|
904
|
+
where: { has: { style: HIDDEN_KEY } },
|
|
905
|
+
set: { visible: false },
|
|
396
906
|
});
|
|
397
907
|
}
|
|
398
|
-
|
|
399
|
-
|
|
400
|
-
|
|
401
|
-
|
|
402
|
-
|
|
403
|
-
|
|
404
|
-
|
|
405
|
-
|
|
406
|
-
|
|
407
|
-
|
|
408
|
-
|
|
908
|
+
const colors = edgeColors(snapshot, channels, gexf, preview);
|
|
909
|
+
perElementDefault(edge, "edge", ["color", MIXED_COLOR_KEY], withoutOwn(edges.color, snapshot.edgeCount, (e) => hexOf(colors[e])), "END_NODE_COLORS");
|
|
910
|
+
perElementDefault(edge, "edge", ["opacity", "end-opacity"], withoutOwn(edges.color, snapshot.edgeCount, (e) => colors[e][3] / 255).map((v, e) => {
|
|
911
|
+
// a swallowed edge Gephi draws only the arrowhead of draws no line
|
|
912
|
+
if (swallowed[e] !== null && !hidden[e]) {
|
|
913
|
+
return 0;
|
|
914
|
+
}
|
|
915
|
+
return v === 1 ? null : v;
|
|
916
|
+
}), "END_NODE_COLORS");
|
|
917
|
+
everyElement(edge, "edge", "preview-curve", preview.on("edge.curved") ? {} : { curved: false });
|
|
918
|
+
// Gephi's `edge.radius` leaves that much empty between each node and its edges' ends, arrowheads too
|
|
919
|
+
const nodeGap = preview.num("edge.radius");
|
|
920
|
+
everyElement(edge, "edge", "preview-radius", nodeGap > 0 ? { nodeGap } : {});
|
|
921
|
+
edgeLabelRules(edge, colors, gexf, preview);
|
|
922
|
+
}
|
|
923
|
+
/**
|
|
924
|
+
* Each edge's color and alpha (0..255) under `edge.color` and `edge.opacity`: MIXED (the default) is each channel,
|
|
925
|
+
* alpha too, the truncated mean of the two end nodes'; `source` and `target` are that node's; `original` is the edge's
|
|
926
|
+
* own viz color, black without one; `#rrggbb` is that color, opaque (`gexf-specimen-edges-lines-p3` .. `-p7`).
|
|
927
|
+
* graphty-element cannot bind an edge's color to its nodes' drawn colors, so the color is frozen here.
|
|
928
|
+
* @param snapshot - the graph
|
|
929
|
+
* @param channels - each node's color channels
|
|
930
|
+
* @param gexf - the GEXF drawing, or undefined
|
|
931
|
+
* @param preview - the settings
|
|
932
|
+
* @returns each edge's r, g, b and alpha
|
|
933
|
+
*/
|
|
934
|
+
function edgeColors(snapshot, channels, gexf, preview) {
|
|
935
|
+
const mode = preview.text("edge.color");
|
|
936
|
+
const factor = preview.num("edge.opacity") / 100;
|
|
937
|
+
const own = (e) => {
|
|
938
|
+
const c = gexf?.original?.color?.[e];
|
|
939
|
+
const a = gexf?.original?.opacity?.[e];
|
|
940
|
+
return nodeChannels(typeof c === "string" ? c : GEPHI_NODE_FILL, typeof a === "number" ? a : null);
|
|
941
|
+
};
|
|
942
|
+
const custom = dependantColor(mode, [0, 0, 0]);
|
|
943
|
+
return Array.from({ length: snapshot.edgeCount }, (_, e) => {
|
|
944
|
+
const s = channels[snapshot.edgeSource(e)];
|
|
945
|
+
const t = channels[snapshot.edgeTarget(e)];
|
|
946
|
+
let c;
|
|
947
|
+
if (mode === "source") {
|
|
948
|
+
c = [...s];
|
|
949
|
+
}
|
|
950
|
+
else if (mode === "target") {
|
|
951
|
+
c = [...t];
|
|
952
|
+
}
|
|
953
|
+
else if (mode === "original") {
|
|
954
|
+
c = own(e);
|
|
955
|
+
}
|
|
956
|
+
else if (mode.startsWith("#") && custom !== null) {
|
|
957
|
+
c = [...custom, 255];
|
|
958
|
+
}
|
|
959
|
+
else {
|
|
960
|
+
c = s.map((v, k) => Math.floor((v + t[k]) / 2));
|
|
961
|
+
}
|
|
962
|
+
return factor === 1 ? c : [c[0], c[1], c[2], c[3] * factor];
|
|
963
|
+
});
|
|
964
|
+
}
|
|
965
|
+
/**
|
|
966
|
+
* The edge label rules of `edge.label.show`: the font's size (not in proportion to anything), color, outline and
|
|
967
|
+
* font (`gexf-specimen-edge-labels-p2` .. `-p15`).
|
|
968
|
+
* @param edge - the edge rules, changed in place
|
|
969
|
+
* @param colors - each edge's color and alpha
|
|
970
|
+
* @param gexf - the GEXF drawing, or undefined
|
|
971
|
+
* @param preview - the settings
|
|
972
|
+
*/
|
|
973
|
+
function edgeLabelRules(edge, colors, gexf, preview) {
|
|
974
|
+
if (gexf?.edgeLabels === undefined || !preview.on("edge.label.show")) {
|
|
975
|
+
return;
|
|
409
976
|
}
|
|
410
|
-
|
|
977
|
+
const font = preview.font("edge");
|
|
978
|
+
const color = preview.text("edge.label.color");
|
|
979
|
+
if (color !== "original") {
|
|
980
|
+
perElementDefault(edge, "edge", ["labelColor", "preview-label-color"], colors.map((c) => hexOf(dependantColor(color, c) ?? [0, 0, 0])), "EDGE_LABEL_COLOR");
|
|
981
|
+
}
|
|
982
|
+
labelOutline(edge, "edge", colors, colors.map(() => font.size), preview);
|
|
983
|
+
// Gephi centers an edge label on its line's middle (gexf-specimen-edge-labels-p2: 0.04 of the font off it)
|
|
984
|
+
everyElement(edge, "edge", "preview-label", {
|
|
985
|
+
labelSize: font.size,
|
|
986
|
+
labelPosition: "center",
|
|
987
|
+
...fontValues(font, preview.on("edge.label.customFont")),
|
|
988
|
+
});
|
|
411
989
|
}
|
|
412
990
|
/**
|
|
413
991
|
* Preview's "mixed" edge color: the mean of two colors, each channel rounded down (`EdgeColor.java` lines 89-93).
|
|
@@ -424,22 +1002,6 @@ function gephiMix(a, b) {
|
|
|
424
1002
|
}
|
|
425
1003
|
return `#${out.toString(16).padStart(6, "0")}`;
|
|
426
1004
|
}
|
|
427
|
-
/**
|
|
428
|
-
* Preview's "darker" border color: each channel times 0.498, rounded (`ColorUtils.java` lines 22-34).
|
|
429
|
-
* @param c - the fill, `#rrggbb`
|
|
430
|
-
* @returns the border color
|
|
431
|
-
*/
|
|
432
|
-
function gephiDarker(c) {
|
|
433
|
-
const x = Number.parseInt(c.slice(1), 16);
|
|
434
|
-
let out = 0;
|
|
435
|
-
for (const shift of [16, 8, 0]) {
|
|
436
|
-
out |= Math.min(255, Math.round(((x >> shift) & 255) * GEPHI_BORDER_DARKEN)) << shift;
|
|
437
|
-
}
|
|
438
|
-
return `#${out.toString(16).padStart(6, "0")}`;
|
|
439
|
-
}
|
|
440
|
-
const mix = (a, b) => gephiMix(String(a), String(b));
|
|
441
|
-
const darker = (c) => gephiDarker(String(c));
|
|
442
|
-
const round6 = (x) => Math.round(x * 1e6) / 1e6;
|
|
443
1005
|
/**
|
|
444
1006
|
* The edge whose source Gephi draws for each edge: an undirected edge in a directed graph is one edge in the file
|
|
445
1007
|
* and two halves here, and the second half takes the first half's.
|
|
@@ -467,10 +1029,10 @@ function withoutOwn(own, count, value) {
|
|
|
467
1029
|
return out;
|
|
468
1030
|
}
|
|
469
1031
|
/**
|
|
470
|
-
* The styles of a GEXF file
|
|
471
|
-
* (black size-10 discs
|
|
472
|
-
*
|
|
473
|
-
*
|
|
1032
|
+
* The styles of a GEXF file as Gephi's preview draws it: each node's label, fill and size, Gephi's defaults beneath
|
|
1033
|
+
* (black size-10 discs, curved edges) and its per-element defaults (gephiRules()); the viz values Gephi does not draw
|
|
1034
|
+
* are left out (withoutUndrawn()); plus a `graphty.styles` block the file holds in `<meta>`, whose file keeps every
|
|
1035
|
+
* value.
|
|
474
1036
|
* @param snapshot - the graph the import built
|
|
475
1037
|
* @param context - the work budget and the block text the import kept
|
|
476
1038
|
* @returns the styles
|
|
@@ -479,18 +1041,42 @@ export function gexfStyles(snapshot, context) {
|
|
|
479
1041
|
const notes = new StyleNotes();
|
|
480
1042
|
const node = vizValues(snapshot, "node", notes, context);
|
|
481
1043
|
const edge = vizValues(snapshot, "edge", notes, context);
|
|
482
|
-
const block
|
|
483
|
-
|
|
1044
|
+
const { block, preview } = keptOf(context.kept);
|
|
1045
|
+
const nodeOpacity = node.fillOpacity;
|
|
1046
|
+
const original = { color: edge.color, opacity: edge.opacity };
|
|
1047
|
+
if (block === null) {
|
|
1048
|
+
withoutUndrawn(node, edge);
|
|
1049
|
+
}
|
|
1050
|
+
else {
|
|
484
1051
|
exactFromBlock(snapshot, block, node, edge);
|
|
485
1052
|
}
|
|
486
|
-
const
|
|
1053
|
+
const labels = drawnLabels(node.label, preview, "node", block !== null);
|
|
1054
|
+
const overlapHidden = block === null && labels !== undefined && preview.on("node.label.avoidOverlap")
|
|
1055
|
+
? gephiOverlapHidden(snapshot, labels, node.width, preview)
|
|
1056
|
+
: null;
|
|
1057
|
+
overlapHidden?.forEach((hide, i) => {
|
|
1058
|
+
if (hide && labels !== undefined) {
|
|
1059
|
+
labels[i] = null;
|
|
1060
|
+
}
|
|
1061
|
+
});
|
|
1062
|
+
if (labels === undefined) {
|
|
1063
|
+
delete node.label;
|
|
1064
|
+
}
|
|
1065
|
+
else {
|
|
1066
|
+
node.label = labels;
|
|
1067
|
+
}
|
|
1068
|
+
const edgeLabels = drawnLabels(edgeLabelValues(snapshot), preview, "edge", block !== null);
|
|
1069
|
+
if (edgeLabels !== undefined) {
|
|
1070
|
+
edge.label = edgeLabels;
|
|
1071
|
+
}
|
|
1072
|
+
const rules = gephiRules(snapshot, { fill: node.fill, fillOpacity: nodeOpacity, width: node.width }, { color: edge.color, width: edge.width }, context.budget, { preview, original, edgeLabels, overlapSettled: overlapHidden !== null });
|
|
487
1073
|
return {
|
|
488
1074
|
canonical: true,
|
|
489
1075
|
dialect: "gexf",
|
|
490
1076
|
tool: "gephi",
|
|
491
1077
|
units: "relative",
|
|
492
|
-
node: { values: node, ...
|
|
493
|
-
edge: { values: edge, ...
|
|
1078
|
+
node: { values: node, ...rules.node },
|
|
1079
|
+
edge: { values: edge, ...rules.edge },
|
|
494
1080
|
notes: notes.list(),
|
|
495
1081
|
opacityInColor: true,
|
|
496
1082
|
block,
|
|
@@ -500,6 +1086,55 @@ export function gexfStyles(snapshot, context) {
|
|
|
500
1086
|
},
|
|
501
1087
|
};
|
|
502
1088
|
}
|
|
1089
|
+
/**
|
|
1090
|
+
* What the import kept for the styles: the `graphty.styles` block, and the Preview settings of the `gephiPreview`
|
|
1091
|
+
* option.
|
|
1092
|
+
* @param kept - the kept value: the block's text, or `{ block, gephiPreview }`
|
|
1093
|
+
* @returns the block (null without one) and the Preview settings
|
|
1094
|
+
*/
|
|
1095
|
+
function keptOf(kept) {
|
|
1096
|
+
if (typeof kept === "string") {
|
|
1097
|
+
return { block: kept, preview: new GephiPreview() };
|
|
1098
|
+
}
|
|
1099
|
+
if (typeof kept === "object" && kept !== null) {
|
|
1100
|
+
const { block, gephiPreview } = kept;
|
|
1101
|
+
return { block: typeof block === "string" ? block : null, preview: new GephiPreview(gephiPreview) };
|
|
1102
|
+
}
|
|
1103
|
+
return { block: null, preview: new GephiPreview() };
|
|
1104
|
+
}
|
|
1105
|
+
/**
|
|
1106
|
+
* Each edge's `label` attribute.
|
|
1107
|
+
* @param snapshot - the graph
|
|
1108
|
+
* @returns the labels, or undefined when no edge has one
|
|
1109
|
+
*/
|
|
1110
|
+
function edgeLabelValues(snapshot) {
|
|
1111
|
+
const col = snapshot.edges.byRole("label");
|
|
1112
|
+
if (col === null) {
|
|
1113
|
+
return undefined;
|
|
1114
|
+
}
|
|
1115
|
+
return Array.from({ length: snapshot.edgeCount }, (_, e) => {
|
|
1116
|
+
const v = plainCell(col.value(e));
|
|
1117
|
+
return typeof v === "string" && v.length > 0 ? v : null;
|
|
1118
|
+
});
|
|
1119
|
+
}
|
|
1120
|
+
/**
|
|
1121
|
+
* Leaves out the viz values Gephi does not draw, for a file graphty did not write: its preview draws every node an
|
|
1122
|
+
* opaque disc (a node's alpha only tints its edges) and every edge a solid line in its end nodes' mixed color, as
|
|
1123
|
+
* thick as its weight (graphstore keeps no edge thickness or shape, and EdgeColor MIXED ignores an edge's color).
|
|
1124
|
+
* Every `viz:shape` is drawn a disc, an `image` shape too: Gephi Toolkit 0.11.3 draws no picture
|
|
1125
|
+
* (`gexf-specimen-images-charts`: a data: URI and a web URL both drawn as the node's colored disc).
|
|
1126
|
+
* @param node - the node values, changed in place
|
|
1127
|
+
* @param edge - the edge values, changed in place
|
|
1128
|
+
*/
|
|
1129
|
+
function withoutUndrawn(node, edge) {
|
|
1130
|
+
delete node.shape;
|
|
1131
|
+
delete node.image;
|
|
1132
|
+
delete node.fillOpacity;
|
|
1133
|
+
delete edge.color;
|
|
1134
|
+
delete edge.opacity;
|
|
1135
|
+
delete edge.width;
|
|
1136
|
+
delete edge.lineStyle;
|
|
1137
|
+
}
|
|
503
1138
|
/**
|
|
504
1139
|
* For a file graphty wrote: where a viz value is the nearest GEXF value of what the `graphty.styles` block gives (a
|
|
505
1140
|
* hexagon written as a disc, a width and height written as one size), the block's exact value is the truth, so a
|
|
@@ -511,44 +1146,32 @@ export function gexfStyles(snapshot, context) {
|
|
|
511
1146
|
* @param edge - the edge values, changed in place
|
|
512
1147
|
*/
|
|
513
1148
|
function exactFromBlock(snapshot, text, node, edge) {
|
|
514
|
-
const
|
|
515
|
-
const ex = parsed.ok ? blockStyles(parsed.block, snapshot, "gexf") : null;
|
|
516
|
-
if (ex === null) {
|
|
517
|
-
return;
|
|
518
|
-
}
|
|
519
|
-
const exact = (values, target, property, written) => {
|
|
520
|
-
const native = values[property];
|
|
521
|
-
if (native === undefined) {
|
|
522
|
-
return;
|
|
523
|
-
}
|
|
524
|
-
const want = resolveStyles(ex, target, property, snapshot);
|
|
525
|
-
for (let i = 0; i < native.length; i++) {
|
|
526
|
-
const w = want[i];
|
|
527
|
-
// a size is written from the width and the height together: one the block leaves unset reads back too
|
|
528
|
-
const writable = w !== null || property === "width" || property === "height";
|
|
529
|
-
if (writable && native[i] !== w && native[i] !== null && native[i] === written(w, i)) {
|
|
530
|
-
native[i] = w;
|
|
531
|
-
}
|
|
532
|
-
}
|
|
533
|
-
};
|
|
534
|
-
const width = resolveStyles(ex, "node", "width", snapshot);
|
|
535
|
-
const height = resolveStyles(ex, "node", "height", snapshot);
|
|
536
|
-
const size = (i) => {
|
|
537
|
-
const w = width[i];
|
|
538
|
-
const h = height[i];
|
|
539
|
-
return typeof w === "number" && typeof h === "number" ? Math.max(w, h) : (w ?? h);
|
|
540
|
-
};
|
|
541
|
-
const read = new Map([
|
|
1149
|
+
const shapeRead = new Map([
|
|
542
1150
|
["disc", "ellipse"],
|
|
543
1151
|
["square", "rectangle"],
|
|
544
1152
|
]);
|
|
545
|
-
|
|
546
|
-
const
|
|
547
|
-
|
|
548
|
-
|
|
549
|
-
|
|
550
|
-
|
|
551
|
-
|
|
1153
|
+
const size = (want) => {
|
|
1154
|
+
const w = want("width");
|
|
1155
|
+
const h = want("height");
|
|
1156
|
+
return typeof w === "number" && typeof h === "number" ? Math.max(w, h) : (w ?? h);
|
|
1157
|
+
};
|
|
1158
|
+
// what the viz element written for an element's block values reads back as
|
|
1159
|
+
const written = {
|
|
1160
|
+
shape: (want) => {
|
|
1161
|
+
const { value } = gexfNodeShape(String(want("shape")));
|
|
1162
|
+
return shapeRead.get(value) ?? value;
|
|
1163
|
+
},
|
|
1164
|
+
width: size,
|
|
1165
|
+
height: size,
|
|
1166
|
+
lineStyle: (want) => gexfEdgeShape(String(want("lineStyle"))).value,
|
|
1167
|
+
};
|
|
1168
|
+
takeFromBlock(snapshot, text, "gexf", (target) => ({
|
|
1169
|
+
values: target === "node" ? node : edge,
|
|
1170
|
+
properties: target === "node" ? ["shape", "width", "height"] : ["lineStyle"],
|
|
1171
|
+
readBack: (_i, want) => (property) => written[property](want),
|
|
1172
|
+
// a size is written from the width and the height together: one the block leaves unset reads back too
|
|
1173
|
+
take: (property, wanted, native) => native !== null && (wanted !== null || property === "width" || property === "height"),
|
|
1174
|
+
}));
|
|
552
1175
|
}
|
|
553
1176
|
/**
|
|
554
1177
|
* The dtype a tagged column is written with: numbers, booleans or text (a mixed column as text).
|
|
@@ -594,7 +1217,7 @@ export function gexfStyledExport(snapshot, input) {
|
|
|
594
1217
|
const size = nodeSizes[i];
|
|
595
1218
|
const s = nodeShapes[i];
|
|
596
1219
|
return (colorElement(fill[i], fillOpacity[i], indent) +
|
|
597
|
-
(size === null ? "" : `${indent}<viz:size value="${String(size)}"/>\n`) +
|
|
1220
|
+
(size === null ? "" : `${indent}<viz:size value="${String(size / 2)}"/>\n`) +
|
|
598
1221
|
shapeElement(s, s === "image" ? String(image[i]) : null, indent));
|
|
599
1222
|
},
|
|
600
1223
|
edge(e, indent) {
|