@graphty/graph-io 0.3.48 → 0.3.50

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (600) hide show
  1. package/dist/chunks/{approximations-C2riR4NT.js → approximations-BRXsll0T.js} +2 -2
  2. package/dist/chunks/{approximations-C2riR4NT.js.map → approximations-BRXsll0T.js.map} +1 -1
  3. package/dist/chunks/bends-BGXjv_U4.js +129 -0
  4. package/dist/chunks/bends-BGXjv_U4.js.map +1 -0
  5. package/dist/chunks/{block-Cu22ewuS.js → block-yl0f_qLO.js} +931 -164
  6. package/dist/chunks/block-yl0f_qLO.js.map +1 -0
  7. package/dist/chunks/choose-CczZJaX_.js +717 -0
  8. package/dist/chunks/choose-CczZJaX_.js.map +1 -0
  9. package/dist/chunks/{codes-CV_Bhcyi.js → codes-BE2xir2k.js} +6 -2
  10. package/dist/chunks/codes-BE2xir2k.js.map +1 -0
  11. package/dist/chunks/{constants-D0LqcsLJ.js → constants-CKkYLPtt.js} +2 -2
  12. package/dist/chunks/{constants-D0LqcsLJ.js.map → constants-CKkYLPtt.js.map} +1 -1
  13. package/dist/chunks/{context-cgmmOxZ2.js → context-DizmppHy.js} +5 -4
  14. package/dist/chunks/{context-cgmmOxZ2.js.map → context-DizmppHy.js.map} +1 -1
  15. package/dist/chunks/{convert-BcQ8_jMo.js → convert-Ct2zelbQ.js} +7 -2
  16. package/dist/chunks/convert-Ct2zelbQ.js.map +1 -0
  17. package/dist/chunks/{credentials-BiQsnMTb.js → credentials-CmvJXYeH.js} +67 -16
  18. package/dist/chunks/credentials-CmvJXYeH.js.map +1 -0
  19. package/dist/chunks/{cx-export-BEeF6ymo.js → cx-export-Bt6NoqTQ.js} +3 -3
  20. package/dist/chunks/{cx-export-BEeF6ymo.js.map → cx-export-Bt6NoqTQ.js.map} +1 -1
  21. package/dist/chunks/descriptor-B28U25x4.js +60 -0
  22. package/dist/chunks/descriptor-B28U25x4.js.map +1 -0
  23. package/dist/chunks/{descriptor-BJ-W0Jd-.js → descriptor-Dhez_Cew.js} +11 -2
  24. package/dist/chunks/descriptor-Dhez_Cew.js.map +1 -0
  25. package/dist/chunks/{emit-CD8xnY8s.js → emit-7Jkpg0yd.js} +1788 -133
  26. package/dist/chunks/emit-7Jkpg0yd.js.map +1 -0
  27. package/dist/chunks/{escape-DH2Egt-l.js → escape-CuCIzNMB.js} +8 -8
  28. package/dist/chunks/{escape-DH2Egt-l.js.map → escape-CuCIzNMB.js.map} +1 -1
  29. package/dist/chunks/{export-CZ7VRm4I.js → export-Cha4dRFz.js} +45 -387
  30. package/dist/chunks/export-Cha4dRFz.js.map +1 -0
  31. package/dist/chunks/{exporter-ChjL5fmP.js → exporter-1Ajud15J.js} +9 -8
  32. package/dist/chunks/{exporter-ChjL5fmP.js.map → exporter-1Ajud15J.js.map} +1 -1
  33. package/dist/chunks/{exporter-BIdaoIgh.js → exporter-B6yvL3wy.js} +7 -7
  34. package/dist/chunks/{exporter-BIdaoIgh.js.map → exporter-B6yvL3wy.js.map} +1 -1
  35. package/dist/chunks/{exporter-Dcw7Ldtq.js → exporter-BP6otMO6.js} +6 -6
  36. package/dist/chunks/{exporter-Dcw7Ldtq.js.map → exporter-BP6otMO6.js.map} +1 -1
  37. package/dist/chunks/{exporter-DtVU80Fa.js → exporter-CA5q8ROP.js} +9 -8
  38. package/dist/chunks/{exporter-DtVU80Fa.js.map → exporter-CA5q8ROP.js.map} +1 -1
  39. package/dist/chunks/{exporter-bxxjOrDZ.js → exporter-CQQZFJ2v.js} +1284 -156
  40. package/dist/chunks/exporter-CQQZFJ2v.js.map +1 -0
  41. package/dist/chunks/format-BXiAb-1h.js +408 -0
  42. package/dist/chunks/format-BXiAb-1h.js.map +1 -0
  43. package/dist/chunks/{generic-CP6YD34u.js → generic-Dc21MAdg.js} +387 -31
  44. package/dist/chunks/generic-Dc21MAdg.js.map +1 -0
  45. package/dist/chunks/{importer-B87_fmVx.js → importer-C6NVpCXp.js} +327 -84
  46. package/dist/chunks/importer-C6NVpCXp.js.map +1 -0
  47. package/dist/chunks/{importer-DPZDN40-.js → importer-CKFe4q54.js} +25 -17
  48. package/dist/chunks/importer-CKFe4q54.js.map +1 -0
  49. package/dist/chunks/{importer-Bji2MeWr.js → importer-CKbUbsJA.js} +13 -10
  50. package/dist/chunks/{importer-Bji2MeWr.js.map → importer-CKbUbsJA.js.map} +1 -1
  51. package/dist/chunks/{importer-CB_zV5_L.js → importer-ClCsdgTJ.js} +208 -1104
  52. package/dist/chunks/importer-ClCsdgTJ.js.map +1 -0
  53. package/dist/chunks/{importer-e3huMZbm.js → importer-CyVZTrf0.js} +14 -10
  54. package/dist/chunks/importer-CyVZTrf0.js.map +1 -0
  55. package/dist/chunks/{importer-CVT-JyDE.js → importer-DgG4v1Ms.js} +1537 -355
  56. package/dist/chunks/importer-DgG4v1Ms.js.map +1 -0
  57. package/dist/chunks/{importer-Cyy6UseH.js → importer-asFUrIsj.js} +66 -13
  58. package/dist/chunks/importer-asFUrIsj.js.map +1 -0
  59. package/dist/chunks/{input-Ccg9I22A.js → input-CAxt_aV-.js} +4 -4
  60. package/dist/chunks/{input-Ccg9I22A.js.map → input-CAxt_aV-.js.map} +1 -1
  61. package/dist/chunks/{json-elements-By172SVq.js → json-elements-Cq76WjnZ.js} +4 -4
  62. package/dist/chunks/{json-elements-By172SVq.js.map → json-elements-Cq76WjnZ.js.map} +1 -1
  63. package/dist/chunks/{lexicon-u2SI5xcx.js → lexicon-IVRq2Uoo.js} +282 -74
  64. package/dist/chunks/lexicon-IVRq2Uoo.js.map +1 -0
  65. package/dist/chunks/{ontology-export-BwgMyuF0.js → ontology-export-OMo91mb0.js} +4 -4
  66. package/dist/chunks/{ontology-export-BwgMyuF0.js.map → ontology-export-OMo91mb0.js.map} +1 -1
  67. package/dist/chunks/{records-Cgvxz-Vx.js → records-NJiYvekn.js} +2 -2
  68. package/dist/chunks/{records-Cgvxz-Vx.js.map → records-NJiYvekn.js.map} +1 -1
  69. package/dist/chunks/{report-CgdsL9Hb.js → report-CwMfYa9J.js} +23 -23
  70. package/dist/chunks/{report-CgdsL9Hb.js.map → report-CwMfYa9J.js.map} +1 -1
  71. package/dist/chunks/round-trip-Cy3_SHRZ.js +79 -0
  72. package/dist/chunks/round-trip-Cy3_SHRZ.js.map +1 -0
  73. package/dist/chunks/{sigv4-LkAzsLAu.js → sigv4-BXwVbza3.js} +5 -5
  74. package/dist/chunks/sigv4-BXwVbza3.js.map +1 -0
  75. package/dist/chunks/{styles-CaABMoO1.js → styles-CAVmBLgp.js} +1237 -138
  76. package/dist/chunks/styles-CAVmBLgp.js.map +1 -0
  77. package/dist/chunks/styles-CPczw1Jz.js +1928 -0
  78. package/dist/chunks/styles-CPczw1Jz.js.map +1 -0
  79. package/dist/chunks/styles-boK6Ln54.js +2847 -0
  80. package/dist/chunks/styles-boK6Ln54.js.map +1 -0
  81. package/dist/chunks/{styles-yed-Cs1nmrjn.js → styles-yed-XeFBQ6VS.js} +506 -175
  82. package/dist/chunks/styles-yed-XeFBQ6VS.js.map +1 -0
  83. package/dist/chunks/{text-BuKQVMz2.js → text-ystE2bYi.js} +2 -2
  84. package/dist/chunks/{text-BuKQVMz2.js.map → text-ystE2bYi.js.map} +1 -1
  85. package/dist/csv.js +7 -7
  86. package/dist/cx.js +2 -2
  87. package/dist/cx2.js +2 -2
  88. package/dist/cys.js +1 -1
  89. package/dist/dot.js +8 -4
  90. package/dist/dot.js.map +1 -1
  91. package/dist/gexf.js +42 -12
  92. package/dist/gexf.js.map +1 -1
  93. package/dist/gml.js +848 -194
  94. package/dist/gml.js.map +1 -1
  95. package/dist/graph-io.js +230 -193
  96. package/dist/graph-io.js.map +1 -1
  97. package/dist/graphml.js +3 -3
  98. package/dist/json.js +3 -2
  99. package/dist/neo4j.js +6 -6
  100. package/dist/obo.js +1 -1
  101. package/dist/pajek.js +1 -1
  102. package/dist/positions.js +45 -3
  103. package/dist/positions.js.map +1 -1
  104. package/dist/sources-cypher.js +141 -23
  105. package/dist/sources-cypher.js.map +1 -1
  106. package/dist/sources-ndex.js +2 -2
  107. package/dist/sources-rest.js +32 -6
  108. package/dist/sources-rest.js.map +1 -1
  109. package/dist/sources-sparql.d.ts +1 -0
  110. package/dist/sources-sparql.js +439 -0
  111. package/dist/sources-sparql.js.map +1 -0
  112. package/dist/src/formats/cx/importer.d.ts.map +1 -1
  113. package/dist/src/formats/cx/importer.js +5 -1
  114. package/dist/src/formats/cx/importer.js.map +1 -1
  115. package/dist/src/formats/cx/styles.d.ts +24 -1
  116. package/dist/src/formats/cx/styles.d.ts.map +1 -1
  117. package/dist/src/formats/cx/styles.js +117 -11
  118. package/dist/src/formats/cx/styles.js.map +1 -1
  119. package/dist/src/formats/cx2/importer.d.ts.map +1 -1
  120. package/dist/src/formats/cx2/importer.js +1 -0
  121. package/dist/src/formats/cx2/importer.js.map +1 -1
  122. package/dist/src/formats/cx2/styles.d.ts.map +1 -1
  123. package/dist/src/formats/cx2/styles.js +3 -1
  124. package/dist/src/formats/cx2/styles.js.map +1 -1
  125. package/dist/src/formats/cys/importer.d.ts.map +1 -1
  126. package/dist/src/formats/cys/importer.js +1 -0
  127. package/dist/src/formats/cys/importer.js.map +1 -1
  128. package/dist/src/formats/cys/styles.d.ts +2 -0
  129. package/dist/src/formats/cys/styles.d.ts.map +1 -1
  130. package/dist/src/formats/cys/styles.js +15 -7
  131. package/dist/src/formats/cys/styles.js.map +1 -1
  132. package/dist/src/formats/dot/drawing.d.ts +98 -0
  133. package/dist/src/formats/dot/drawing.d.ts.map +1 -0
  134. package/dist/src/formats/dot/drawing.js +734 -0
  135. package/dist/src/formats/dot/drawing.js.map +1 -0
  136. package/dist/src/formats/dot/exporter.d.ts.map +1 -1
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  139. package/dist/src/formats/dot/importer.d.ts +6 -1
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  141. package/dist/src/formats/dot/importer.js +170 -33
  142. package/dist/src/formats/dot/importer.js.map +1 -1
  143. package/dist/src/formats/dot/index.d.ts +3 -1
  144. package/dist/src/formats/dot/index.d.ts.map +1 -1
  145. package/dist/src/formats/dot/index.js +2 -1
  146. package/dist/src/formats/dot/index.js.map +1 -1
  147. package/dist/src/formats/dot/label-places.d.ts +41 -0
  148. package/dist/src/formats/dot/label-places.d.ts.map +1 -0
  149. package/dist/src/formats/dot/label-places.js +185 -0
  150. package/dist/src/formats/dot/label-places.js.map +1 -0
  151. package/dist/src/formats/dot/names.d.ts +13 -0
  152. package/dist/src/formats/dot/names.d.ts.map +1 -1
  153. package/dist/src/formats/dot/names.js +13 -0
  154. package/dist/src/formats/dot/names.js.map +1 -1
  155. package/dist/src/formats/dot/record.d.ts +50 -0
  156. package/dist/src/formats/dot/record.d.ts.map +1 -0
  157. package/dist/src/formats/dot/record.js +275 -0
  158. package/dist/src/formats/dot/record.js.map +1 -0
  159. package/dist/src/formats/dot/styles.d.ts +72 -2
  160. package/dist/src/formats/dot/styles.d.ts.map +1 -1
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  162. package/dist/src/formats/dot/styles.js.map +1 -1
  163. package/dist/src/formats/gexf/dialog-metrics.d.ts +15 -0
  164. package/dist/src/formats/gexf/dialog-metrics.d.ts.map +1 -0
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  167. package/dist/src/formats/gexf/importer.d.ts +7 -0
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  171. package/dist/src/formats/gexf/preview.d.ts +77 -0
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  175. package/dist/src/formats/gexf/schema.d.ts.map +1 -1
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  178. package/dist/src/formats/gexf/styles.d.ts +58 -31
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  180. package/dist/src/formats/gexf/styles.js +848 -225
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  182. package/dist/src/formats/gml/importer.d.ts +5 -2
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  190. package/dist/src/formats/gml/positions.d.ts +7 -0
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  262. package/dist/src/index.d.ts +6 -5
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@@ -14,11 +14,11 @@ import { canonNumber } from "../../styles/canon/number.js";
14
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  import type { CanonSite } from "../../styles/canon/site.js";
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  import { canonText } from "../../styles/canon/text.js";
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  import { StyleApproximations } from "../../styles/io/approximations.js";
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- import { blockStyles, parseStyleBlock, STYLE_BLOCK_NAME } from "../../styles/io/block.js";
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+ import { STYLE_BLOCK_NAME } from "../../styles/io/block.js";
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+ import { type ElementValues, takeFromBlock } from "../../styles/io/round-trip.js";
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  import type { ExporterStyleInput } from "../../styles/io/writer.js";
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  import { StyleNotes } from "../../styles/notes.js";
20
- import { styleFingerprint } from "../../styles/plan/features.js";
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- import { plainCell, resolveStyles } from "../../styles/plan/resolve.js";
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+ import { plainCell } from "../../styles/plan/resolve.js";
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  import type {
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  ImporterStyles,
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  StyleColumn,
@@ -29,7 +29,9 @@ import type {
29
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  StyleWriteCapabilities,
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  } from "../../styles/types.js";
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  import type { LossNote } from "../../types.js";
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- import { NODE_COLUMNS, VIZ_NAMESPACE } from "./schema.js";
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+ import { DIALOG_LINE_HEIGHT, dialogWidth } from "./dialog-metrics.js";
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+ import { dependantColor, drawnLabels, edgeThickness, type GephiFont, GephiPreview } from "./preview.js";
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+ import { NODE_COLUMNS, TEMPORAL_COLUMNS, temporalTableName, VIZ_NAMESPACE } from "./schema.js";
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  /** The column of a node's `label` attribute. */
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  const LABEL_COLUMN = NODE_COLUMNS.label;
@@ -58,15 +60,20 @@ const GEPHI_NODE_FILL = "#000000";
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  /** The style column marking directed edges, which Gephi draws with an arrow at the target. */
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  const DIRECTED_KEY = "directed";
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62
 
61
- /** The style column holding the mixed color of each edge without a color of its own. */
62
- const MIXED_COLOR_KEY = "mixed-color";
63
- /** The style columns of the border Gephi draws on each node without one of its own. */
64
- const BORDER_COLOR_KEY = "border-color";
65
- const BORDER_WIDTH_KEY = "border-width";
66
- /** The style column of the label size Gephi draws on each node, scaled with the node. */
67
- const LABEL_SIZE_KEY = "label-size";
68
- /** The style column of the width Gephi draws an edge with from its weight. */
69
- const WEIGHT_WIDTH_KEY = "weight-width";
63
+ /** The style column marking the nodes whose labels Gephi hides where they overlap (node.label.avoidOverlap). */
64
+ const AVOID_OVERLAP_KEY = "label-avoid-overlap";
65
+
66
+ /** The style column marking the edges Gephi does not draw (dropped, or merged into a parallel edge). */
67
+ const HIDDEN_KEY = "gephi-hidden";
68
+
69
+ /** The style column holding the mix of its end nodes' colors of each edge without a color of its own. */
70
+ const MIXED_COLOR_KEY = "end-colors";
71
+ /** The width property and the style column of the width Gephi draws an edge with from its weight. */
72
+ const WEIGHT_WIDTH = ["width", "weight-width"] as const;
73
+ /** Gephi's node width when a node has no `viz:size` (graphstore NodeImpl size 10, a radius). */
74
+ const GEPHI_NODE_WIDTH = 20;
75
+ /** How much thicker than its weight Gephi draws a self-loop. */
76
+ const SELF_LOOP_THICKNESS = 1.3;
70
77
 
71
78
  /** GEXF's node shapes, by the neutral shape each writes exactly. */
72
79
  const NODE_SHAPES: ReadonlyMap<string, string> = new Map([
@@ -116,26 +123,37 @@ const VIZ_COLUMNS: Readonly<Record<StyleTarget, readonly string[]>> = {
116
123
  };
117
124
 
118
125
  /**
119
- * A `viz:color` `hex` value as channels: r, g and b 0..255 and an alpha 0..1. Reads `#rgb`, `#rgba`, `#rrggbb` and
120
- * `#rrggbbaa` (alpha last), with or without the `#`.
126
+ * A `viz:color` `hex` value as channels: r, g and b 0..255 and an alpha 0..1, read the way Gephi reads it: Java's
127
+ * `Color.decode`, which parses the text as one integer (`Integer.decode`: `#` or `0x` hexadecimal, a leading `0`
128
+ * octal, otherwise decimal; a leading sign allowed) and keeps its low 24 bits, opaque. So `#rrggbb` is the color it
129
+ * names, but `#f80` is `#000f80`, `#4daf4a80` is `#af4a80` and `984ea3` is not a color at all (Gephi draws that node
130
+ * as if it had no color: `gexf-specimen-node-fills-borders`, `color-hex-short`, `color-hex-alpha`, `color-hex-nohash`).
121
131
  * @param hex - the attribute's value
122
- * @returns `[r, g, b, a]`, or null when it is not a hex color
132
+ * @returns `[r, g, b, 1]`, or null when Java cannot read it as an int
123
133
  */
124
134
  export function canonVizColor(hex: string): [number, number, number, number] | null {
125
- const text = hex.trim();
126
- if (!/^#?([0-9a-f]{3,4}|[0-9a-f]{6}|[0-9a-f]{8})$/i.test(text)) {
135
+ const m = /^([+-]?)(?:(0x|0X|#)([0-9a-fA-F]+)|(0[0-7]+)|(\d+))$/.exec(hex.trim());
136
+ if (m === null) {
127
137
  return null;
128
138
  }
129
- const c = canonColor(text.startsWith("#") ? text : `#${text}`, "css", {
130
- notes: new StyleNotes(),
131
- target: "node",
132
- property: "fill",
133
- });
134
- if (c === null) {
139
+ const [, sign, , hexDigits, octal, decimal] = m;
140
+ let v: number;
141
+ if (hexDigits !== undefined) {
142
+ v = Number.parseInt(hexDigits, 16);
143
+ } else if (octal !== undefined) {
144
+ v = Number.parseInt(octal, 8);
145
+ } else {
146
+ v = Number.parseInt(decimal, 10);
147
+ }
148
+ if (sign === "-") {
149
+ v = -v;
150
+ }
151
+ // Integer.decode accepts -2^31 .. 2^31 - 1 only
152
+ if (v < -2147483648 || v > 2147483647) {
135
153
  return null;
136
154
  }
137
- const n = Number.parseInt(c.color.slice(1), 16);
138
- return [(n >> 16) & 255, (n >> 8) & 255, n & 255, c.alpha];
155
+ const n = v & 0xffffff;
156
+ return [(n >> 16) & 255, (n >> 8) & 255, n & 255, 1];
139
157
  }
140
158
 
141
159
  /**
@@ -256,17 +274,22 @@ function readVizColor(viz: VizRead, color: string, i: number): void {
256
274
  }
257
275
 
258
276
  /**
259
- * Reads one element's viz size (a node's width and height) or thickness (an edge's width).
277
+ * Reads one element's viz size (a node's width and height) or thickness (an edge's width). A node's
278
+ * size is a radius, as Gephi and sigma draw it (Gephi's preview: a circle of radius 0.92 x size plus
279
+ * a 0.16 x size outline, an outer diameter of 2 x size), so its width and height are twice it.
260
280
  * @param viz - the target's reading
261
281
  * @param size - the viz size or thickness column
262
282
  * @param i - the element
263
283
  */
264
284
  function readVizSize(viz: VizRead, size: string, i: number): void {
265
285
  const v = canonNumber(plainCell(viz.table.value(size, i)), viz.site(i, "width"));
266
- if (v !== null) {
267
- viz.column("width")[i] = v;
286
+ // Gephi draws a node of viz:size 0 at its default size 10 (gexf-specimen-node-sizes-opacity, size-0)
287
+ if (v !== null && !(v === 0 && viz.target === "node")) {
268
288
  if (viz.target === "node") {
269
- viz.column("height")[i] = v;
289
+ viz.column("width")[i] = 2 * v;
290
+ viz.column("height")[i] = 2 * v;
291
+ } else {
292
+ viz.column("width")[i] = v;
270
293
  }
271
294
  }
272
295
  }
@@ -288,206 +311,987 @@ function readVizShape(viz: VizRead, shape: string, i: number): boolean {
288
311
  return typeof raw === "string" && raw.toLowerCase() === "image";
289
312
  }
290
313
 
314
+ /** What Gephi draws of each edge (gephiEdges()). */
315
+ interface GephiDrawnEdges {
316
+ /** Whether Gephi draws the edge directed, with an arrow at its target. */
317
+ readonly directed: boolean[];
318
+ /** Whether Gephi does not draw the edge at all. */
319
+ readonly hidden: boolean[];
320
+ /** The weight Gephi draws the edge with: merged, then shifted. */
321
+ readonly weight: number[];
322
+ }
323
+
291
324
  /**
292
- * Whether each edge is directed.
325
+ * The edges as Gephi's importer and preview draw them (measured with the Gephi Toolkit 0.11.3:
326
+ * `gexf-specimen-edges-lines`, `-p13`, `-p15`, `gexf-specimen-arrows`, `-p6`, `-p7`):
327
+ * - an edge whose own type is against the graph's `defaultedgetype` is dropped (`undirected` in a `directed`
328
+ * graph, `directed` in an `undirected` one); a `mutual` graph, or one with no `defaultedgetype`, keeps every
329
+ * edge, an untyped or `mutual` one directed;
330
+ * - edges of one kind between the same ends (either way round for an undirected edge) are merged into the first,
331
+ * whose weight is their sum;
332
+ * - an edge's weight is its `weight` (1 when it has none), or, when an edge attribute named weight is dynamic, its
333
+ * value over the earliest interval (0 when it has none);
334
+ * - when the smallest weight drawn is 0 or less, every weight is raised by |smallest| + 1.
335
+ * An undirected edge of a directed snapshot is two halves here; both take what its first half gets.
293
336
  * @param snapshot - the graph
294
- * @returns one flag per edge
337
+ * @param gexf - whether the file is a GEXF; another format keeps its own direction, with nothing merged or dropped
338
+ * @returns per edge, what Gephi draws
295
339
  */
296
- function directedEdges(snapshot: GraphSnapshot): boolean[] {
297
- const out = new Array<boolean>(snapshot.edgeCount).fill(snapshot.directed);
298
- const col = snapshot.directed ? snapshot.edges.byRole("directed") : null;
299
- if (col !== null) {
300
- for (let e = 0; e < snapshot.edgeCount; e++) {
301
- out[e] = plainCell(col.value(e)) !== false;
340
+ function gephiEdges(snapshot: GraphSnapshot, gexf: boolean): GephiDrawnEdges {
341
+ const n = snapshot.edgeCount;
342
+ const first = firstHalf(snapshot);
343
+ // another format Gephi draws: its own direction, nothing merged or dropped
344
+ if (!gexf) {
345
+ return otherFormatEdges(snapshot);
346
+ }
347
+ const header = gexfDefaultEdgeType(snapshot);
348
+ const dirCol = snapshot.edges.byRole("directed");
349
+ const mutualCol = snapshot.edges.byRole("mutual");
350
+ const kindCol = snapshot.edges.byRole("kind");
351
+ const weightOf = gephiWeight(snapshot);
352
+ const out: GephiDrawnEdges = {
353
+ directed: new Array<boolean>(n).fill(false),
354
+ hidden: new Array<boolean>(n).fill(false),
355
+ weight: new Array<number>(n).fill(1),
356
+ };
357
+ const leaders = new Map<string, number>();
358
+ const drawnLeaders: number[] = [];
359
+ const ownDirection = gexfOwnDirection(header, dirCol, mutualCol);
360
+ for (let e = 0; e < n; e++) {
361
+ const f = first(e);
362
+ if (f !== e) {
363
+ continue;
364
+ }
365
+ // the edge's own type: graph-io records it only when the file mixes directions
366
+ const { ownUndirected, mismatched } = ownDirection(f);
367
+ if (mismatched) {
368
+ out.hidden[f] = true;
369
+ continue;
302
370
  }
371
+ // Gephi draws no arrowhead on a self-loop
372
+ const s = snapshot.edgeSource(f);
373
+ const t = snapshot.edgeTarget(f);
374
+ const directed = header !== "undirected" && s !== t && !ownUndirected;
375
+ out.directed[f] = directed;
376
+ const kind = kindCol?.isSet(f) === true ? String(kindCol.value(f)) : "";
377
+ const key = `${kind}\u0000${gephiEndsKey(s, t, directed)}`;
378
+ const leader = leaders.get(key);
379
+ if (leader === undefined) {
380
+ leaders.set(key, f);
381
+ drawnLeaders.push(f);
382
+ out.weight[f] = weightOf(f);
383
+ } else {
384
+ out.weight[leader] += weightOf(f);
385
+ out.hidden[f] = true;
386
+ }
387
+ }
388
+ // a loop, not Math.min(...): a spread of every edge overflows the call stack on a large graph
389
+ const smallest = drawnLeaders.reduce((m, f) => Math.min(m, out.weight[f]), Infinity);
390
+ const shift = smallest <= 0 ? 1 - smallest : 0;
391
+ for (let e = 0; e < n; e++) {
392
+ const f = first(e);
393
+ out.directed[e] = out.directed[f];
394
+ out.hidden[e] = out.hidden[f];
395
+ out.weight[e] = out.weight[f] + shift;
303
396
  }
304
397
  return out;
305
398
  }
306
399
 
307
400
  /**
308
- * The rules Gephi's defaults make per element, as Gephi's Preview draws them (`DefaultPreset.java`; sources in
309
- * `styles/defaults.ts`): an arrow at the target of every directed edge; the mean of its two nodes' colors on every
310
- * edge without a color of its own (Preview's "mixed" edge color); the edge's weight as the thickness of every edge
311
- * without a thickness of its own; a border darker than its fill and scaled with its size on every node without a
312
- * border of its own; and each node's label, in a size scaled with the node (12 for a size-10 node) on every node
313
- * without a label size of its own (Gephi draws GEXF, its GraphML export and its GML the same way).
314
- *
315
- * Labels are a choice, not Gephi's default: Gephi hides them in both its drawings (`DefaultPreset.java` line 106,
316
- * `VizConfig.java` line 113), while sigma.js and gexf-js, which most published GEXF files are viewed with, show
317
- * them. graph-io shows them: a label is what the file states about a node, and hiding it is a view setting Gephi
318
- * offers as a switch, like the application's own; an application that wants Gephi's look hides them itself.
319
- *
320
- * An edge's own color is kept, though Preview's "mixed" mode draws over it: the file states it, and Gephi's
321
- * Overview, Preview's "original" mode, sigma.js and gexf-js all draw it.
401
+ * The ends of an edge as the key Gephi merges parallel edges by: in order for a directed edge, either way round
402
+ * for an undirected one.
403
+ * @param s - the source node index
404
+ * @param t - the target node index
405
+ * @param directed - whether the edge is drawn directed
406
+ * @returns the key
407
+ */
408
+ function gephiEndsKey(s: number, t: number, directed: boolean): string {
409
+ return directed ? `${String(s)}>${String(t)}` : `${String(Math.min(s, t))}-${String(Math.max(s, t))}`;
410
+ }
411
+
412
+ /**
413
+ * A GEXF edge's own type, read from the directed and mutual columns, or from the header when the file did not
414
+ * mix directions (no directed column); an edge whose own type disagrees with the header's is one Gephi never loads.
415
+ * @param header - the file's default edge type
416
+ * @param dirCol - the directed column, or null
417
+ * @param mutualCol - the mutual column, or null
418
+ * @returns per edge index, whether its own type is undirected and whether it disagrees with the header
419
+ */
420
+ function gexfOwnDirection(
421
+ header: ReturnType<typeof gexfDefaultEdgeType>,
422
+ dirCol: ReturnType<GraphSnapshot["edges"]["byRole"]>,
423
+ mutualCol: ReturnType<GraphSnapshot["edges"]["byRole"]>,
424
+ ): (f: number) => { ownUndirected: boolean; mismatched: boolean } {
425
+ const verdict = (
426
+ ownUndirected: boolean,
427
+ ownDirected: boolean,
428
+ ): { ownUndirected: boolean; mismatched: boolean } => ({
429
+ ownUndirected,
430
+ mismatched: (header === "directed" && ownUndirected) || (header === "undirected" && ownDirected),
431
+ });
432
+ return (f) => {
433
+ if (dirCol === null) {
434
+ return verdict(header === "undirected", header !== "undirected");
435
+ }
436
+ const mutual = mutualCol?.value(f) === true;
437
+ return verdict(dirCol.value(f) === false && !mutual, dirCol.value(f) === true && !mutual);
438
+ };
439
+ }
440
+
441
+ /**
442
+ * The edges of a format other than GEXF as Gephi draws them: each in its own direction, as thick as its weight (1
443
+ * for a weight of 0 or below, so the edge stays visible).
322
444
  * @param snapshot - the graph
323
- * @param node - the node values read from the file
324
- * @param edge - the edge values read from the file
325
- * @param budget - the work budget
326
- * @returns the node and edge rules and the style columns they read
445
+ * @returns per edge, what Gephi draws
327
446
  */
328
- export function gephiRules(
329
- snapshot: GraphSnapshot,
330
- node: Readonly<Record<string, readonly (StyleValue | null)[]>>,
331
- edge: Readonly<Record<string, readonly (StyleValue | null)[]>>,
332
- budget: StyleReadContext["budget"],
333
- ): { readonly node: ToolRules; readonly edge: ToolRules } {
334
- return { node: gephiNodeRules(snapshot, node, budget), edge: gephiEdgeRules(snapshot, node, edge, budget) };
447
+ function otherFormatEdges(snapshot: GraphSnapshot): GephiDrawnEdges {
448
+ const first = firstHalf(snapshot);
449
+ const weightOf = gephiWeight(snapshot);
450
+ const directed = new Array<boolean>(snapshot.edgeCount).fill(snapshot.directed);
451
+ const col = snapshot.directed ? snapshot.edges.byRole("directed") : null;
452
+ const weight: number[] = [];
453
+ for (let e = 0; e < snapshot.edgeCount; e++) {
454
+ if (col !== null) {
455
+ directed[e] = plainCell(col.value(e)) !== false;
456
+ }
457
+ const w = weightOf(first(e));
458
+ weight.push(w > 0 ? w : 1);
459
+ }
460
+ return { directed, hidden: directed.map(() => false), weight };
335
461
  }
336
462
 
337
- /** Rules and the style columns they read. */
338
- interface ToolRules {
463
+ /**
464
+ * The graph's `defaultedgetype` as written, lower case, or null when it wrote none.
465
+ * @param snapshot - the graph
466
+ * @returns the keyword
467
+ */
468
+ function gexfDefaultEdgeType(snapshot: GraphSnapshot): string | null {
469
+ const written = (snapshot.meta.extra.gexf as { defaultedgetype?: unknown } | undefined)?.defaultedgetype;
470
+ return typeof written === "string" ? written.trim().toLowerCase() : null;
471
+ }
472
+
473
+ /**
474
+ * Each edge's weight as Gephi reads it: an edge attribute whose id or title is `weight` and is dynamic is the weight,
475
+ * at its value over the earliest interval (0 for an edge without one: its static `weight` is not read); otherwise
476
+ * the edge's `weight`, 1 for an edge with none.
477
+ * @param snapshot - the graph
478
+ * @returns the weight of an edge
479
+ */
480
+ function gephiWeight(snapshot: GraphSnapshot): (e: number) => number {
481
+ const isWeight = (v: unknown): boolean => typeof v === "string" && v.toLowerCase() === "weight";
482
+ const dynamic = snapshot.edges
483
+ .names()
484
+ .map((name) => snapshot.edges.get(name))
485
+ .find(
486
+ (c) =>
487
+ c !== null && c.meta.dynamic && [c.meta.name, c.meta.origin?.id, c.meta.origin?.title].some(isWeight),
488
+ );
489
+ const table =
490
+ dynamic === undefined || dynamic === null
491
+ ? undefined
492
+ : snapshot.extensions.get(temporalTableName("edge", dynamic.meta.name));
493
+ if (table !== undefined) {
494
+ const element = table.get(TEMPORAL_COLUMNS.element);
495
+ const start = table.get(TEMPORAL_COLUMNS.start);
496
+ const value = table.get(TEMPORAL_COLUMNS.value);
497
+ const earliest = new Map<number, { start: number; value: number }>();
498
+ for (let row = 0; element !== null && value !== null && row < table.rowCount; row++) {
499
+ const e = element.value(row) as number;
500
+ const at = start?.isSet(row) === true ? (start.value(row) as number) : -Infinity;
501
+ const v = Number(value.value(row));
502
+ const seen = earliest.get(e);
503
+ if (Number.isFinite(v) && (seen === undefined || at < seen.start)) {
504
+ earliest.set(e, { start: at, value: v });
505
+ }
506
+ }
507
+ return (e) => earliest.get(e)?.value ?? 0;
508
+ }
509
+ // the snapshot's own weights (the role column exists only when some edge has none), as their shortest decimal
510
+ const weights = explicitWeights(snapshot);
511
+ return (e) => {
512
+ const w = Number(weights.text(e) ?? 1);
513
+ return Number.isFinite(w) ? w : 1;
514
+ };
515
+ }
516
+
517
+ /** The node values Gephi's per-element defaults are worked out from, each undefined when no node has one. */
518
+ interface GephiNodeValues {
519
+ /** Each node's fill. */
520
+ readonly fill?: readonly (StyleValue | null)[];
521
+ /** Each node's fill opacity (the alpha of its color), null for opaque. */
522
+ readonly fillOpacity?: readonly (StyleValue | null)[];
523
+ /** Each node's width, twice its Gephi size. */
524
+ readonly width?: readonly (StyleValue | null)[];
525
+ }
526
+
527
+ /** The edge values Gephi's per-element defaults give way to, each undefined when no edge has one. */
528
+ interface GephiEdgeValues {
529
+ /** Each edge's own color. */
530
+ readonly color?: readonly (StyleValue | null)[];
531
+ /** Each edge's own width. */
532
+ readonly width?: readonly (StyleValue | null)[];
533
+ }
534
+
535
+ /** The rules of one target and the style columns they read. */
536
+ interface GephiTargetRules {
339
537
  readonly rules: StyleRule[];
340
538
  readonly columns: Map<string, StyleColumn>;
341
539
  }
342
540
 
343
- /** Preview's "darker" border: each channel of the fill times this (`DependantColor.java` line 55). */
344
- const GEPHI_BORDER_DARKEN = 0.498;
345
- /** Preview's border width as a share of the node's drawn width (`SizeUtils.java` lines 11, 37). */
346
- const GEPHI_BORDER_SHARE = 0.08;
347
- /** Gephi's node size when a node has none (`AbstractProcessor.java` lines 195-198). */
348
- const GEPHI_NODE_SIZE = 10;
349
541
  /**
350
- * Preview's label size per unit of node size: Arial 12 (`DefaultPreset.java` line 93) times the node drawn twice its
351
- * size wide times 0.05 (`NodeLabelRenderer.java` lines 165-173, `NODE_LABEL_PROPORTIONAL_SIZE` true), so 12 for a
352
- * size-10 node.
542
+ * A node color's channels as Gephi holds them: r, g, b and alpha, 0..255.
543
+ * @param fill - the node's fill, or null for Gephi's default
544
+ * @param opacity - its opacity, or null for opaque
545
+ * @returns the channels
546
+ */
547
+ function nodeChannels(fill: StyleValue | null | undefined, opacity: StyleValue | null | undefined): number[] {
548
+ const n = Number.parseInt((typeof fill === "string" ? fill : GEPHI_NODE_FILL).slice(1), 16);
549
+ const a = typeof opacity === "number" ? Math.round(opacity * 255) : 255;
550
+ return [(n >> 16) & 255, (n >> 8) & 255, n & 255, a];
551
+ }
552
+
553
+ /**
554
+ * `#rrggbb` of three channels.
555
+ * @param c - r, g and b, 0..255
556
+ * @returns the color
557
+ */
558
+ function hexOf(c: readonly number[]): string {
559
+ return `#${c
560
+ .slice(0, 3)
561
+ .map((v) => v.toString(16).padStart(2, "0"))
562
+ .join("")}`;
563
+ }
564
+
565
+ /**
566
+ * A passthrough rule of a tool default that is itself per element, and its column, when any element takes it.
567
+ * @param out - the target's rules and columns, changed in place
568
+ * @param target - nodes or edges
569
+ * @param pair - the style property and its style column, which is also the rule's id after `<target>.tool.`
570
+ * @param column - the default per element, null where the element has its own value
571
+ * @param reason - why the values are per element
572
+ */
573
+ function perElementDefault(
574
+ out: GephiTargetRules,
575
+ target: StyleTarget,
576
+ pair: readonly [string, string],
577
+ column: (StyleValue | null)[],
578
+ reason: string,
579
+ ): void {
580
+ const [property, key] = pair;
581
+ const elements = column.filter((v) => v !== null).length;
582
+ if (elements === 0) {
583
+ return;
584
+ }
585
+ out.columns.set(key, column);
586
+ out.rules.push({
587
+ id: `${target}.tool.${key}`,
588
+ target,
589
+ role: "passthrough",
590
+ origin: "tool",
591
+ where: { has: { style: key } },
592
+ map: { [property]: { kind: "passthrough" as const, by: { style: key } } },
593
+ facts: { elements, reason },
594
+ });
595
+ }
596
+
597
+ /** What a GEXF drawing adds to gephiRules(): the file is a GEXF, drawn under these Preview settings. */
598
+ interface GephiDrawing {
599
+ /** The Preview settings, Gephi's defaults where none is given. */
600
+ readonly preview: GephiPreview;
601
+ /** Each edge's own viz color and its alpha, which `edge.color=original` draws. */
602
+ readonly original?: {
603
+ readonly color?: readonly (StyleValue | null)[];
604
+ readonly opacity?: readonly (StyleValue | null)[];
605
+ };
606
+ /** Each edge's label, drawn under `edge.label.show`. */
607
+ readonly edgeLabels?: readonly (StyleValue | null)[];
608
+ /** Whether the node labels Gephi's overlap avoidance hides are already left out (gephiOverlapHidden()). */
609
+ readonly overlapSettled?: boolean;
610
+ }
611
+
612
+ /**
613
+ * A tool rule that sets the same values on every element.
614
+ * @param out - the target's rules, changed in place
615
+ * @param target - nodes or edges
616
+ * @param id - the rule's id after `<target>.tool.`
617
+ * @param set - the values
353
618
  */
354
- const GEPHI_LABEL_PER_SIZE = 1.2;
619
+ function everyElement(out: GephiTargetRules, target: StyleTarget, id: string, set: Record<string, StyleValue>): void {
620
+ if (Object.keys(set).length > 0) {
621
+ out.rules.push({
622
+ id: `${target}.tool.${id}`,
623
+ target,
624
+ role: "group",
625
+ origin: "tool",
626
+ where: { all: true },
627
+ set,
628
+ });
629
+ }
630
+ }
355
631
 
356
632
  /**
357
- * The node rules of Gephi's defaults: the border Preview draws, the label and its size scaled with the node.
633
+ * The rules Gephi's preview defaults (DefaultPreset) make per element, as its SVG export draws every GEXF and GraphML
634
+ * file: each node outlined in a darker shade of its fill, 0.08 of its width wide, with its label 0.3 of its width
635
+ * tall; each edge in the mix of its two end nodes' colors and alphas, as thick as its weight, with an arrow at the
636
+ * target of a directed edge. An element's own value is kept (a file graphty wrote states every one). A GEXF drawing
637
+ * also merges and drops edges as Gephi's importer does (gephiEdges()) and follows the Preview settings it was drawn
638
+ * with.
358
639
  * @param snapshot - the graph
359
- * @param node - the node values read from the file
640
+ * @param nodes - each node's fill, opacity and width
641
+ * @param edges - each edge's own color and width
360
642
  * @param budget - the work budget
361
- * @returns the rules and their columns
643
+ * @param gexf - the GEXF drawing, or undefined for another format Gephi draws
644
+ * @returns the node and edge rules and the style columns they read
362
645
  */
363
- function gephiNodeRules(
646
+ export function gephiRules(
364
647
  snapshot: GraphSnapshot,
365
- node: Readonly<Record<string, readonly (StyleValue | null)[]>>,
648
+ nodes: GephiNodeValues,
649
+ edges: GephiEdgeValues,
366
650
  budget: StyleReadContext["budget"],
367
- ): ToolRules {
368
- const rules: StyleRule[] = [];
369
- const columns = new Map<string, StyleColumn>();
370
- const n = snapshot.nodeCount;
371
- budget.spend("node", n);
372
- // Preview draws a ring of the fill, each channel times 0.498 (rounded), 0.08 of the node's width wide
373
- const color = withoutOwn(node.borderColor, n, (i) => darker(node.fill?.[i] ?? GEPHI_NODE_FILL));
374
- const size = (i: number): number => {
375
- const w = node.width?.[i];
376
- return typeof w === "number" ? w : GEPHI_NODE_SIZE;
377
- };
378
- const width = withoutOwn(node.borderWidth, n, (i) => round6(size(i) * GEPHI_BORDER_SHARE));
379
- // Preview scales each label with its node (NODE_LABEL_PROPORTIONAL_SIZE)
380
- const labelSize = withoutOwn(node.labelSize, n, (i) => round6(size(i) * GEPHI_LABEL_PER_SIZE));
381
- for (const [property, key, values, reason] of [
382
- ["borderColor", BORDER_COLOR_KEY, color, "FILL_BORDER"],
383
- ["borderWidth", BORDER_WIDTH_KEY, width, "FILL_BORDER"],
384
- ["labelSize", LABEL_SIZE_KEY, labelSize, "NODE_SIZE_LABEL"],
385
- ] as const) {
386
- const elements = values.filter((v) => v !== null).length;
387
- if (elements > 0) {
388
- columns.set(key, values);
389
- rules.push({
390
- id: `node.tool.${key}`,
391
- target: "node",
392
- role: "passthrough",
393
- origin: "tool",
394
- where: { has: { style: key } },
395
- map: { [property]: { kind: "passthrough" as const, by: { style: key } } },
396
- facts: { elements, reason },
397
- });
398
- }
651
+ gexf?: GephiDrawing,
652
+ ): { readonly node: GephiTargetRules; readonly edge: GephiTargetRules } {
653
+ const preview = gexf?.preview ?? new GephiPreview();
654
+ const node: GephiTargetRules = { rules: [], columns: new Map() };
655
+ const edge: GephiTargetRules = { rules: [], columns: new Map() };
656
+ budget.spend("node", snapshot.nodeCount);
657
+ budget.spend("edge", snapshot.edgeCount);
658
+ const channels = Array.from({ length: snapshot.nodeCount }, (_, i) =>
659
+ nodeChannels(nodes.fill?.[i], nodes.fillOpacity?.[i]),
660
+ );
661
+ const labelSizes = nodeRules(node, snapshot, channels, nodes, preview);
662
+ edgeRules(edge, snapshot, channels, nodes, edges, gexf, preview);
663
+ nodeLabelRules(node, channels, labelSizes, preview, gexf?.overlapSettled === true);
664
+ labelBox(node, channels, nodes, preview);
665
+ return { node, edge };
666
+ }
667
+
668
+ /**
669
+ * A node's width, twice its Gephi size.
670
+ * @param nodes - the node values
671
+ * @param i - the node
672
+ * @returns the width
673
+ */
674
+ function nodeWidth(nodes: GephiNodeValues, i: number): number {
675
+ const w = nodes.width?.[i];
676
+ return typeof w === "number" ? w : GEPHI_NODE_WIDTH;
677
+ }
678
+
679
+ /**
680
+ * The node rules: opacity, border and label size.
681
+ * @param node - the node rules, changed in place
682
+ * @param snapshot - the graph
683
+ * @param channels - each node's color channels
684
+ * @param nodes - the node values
685
+ * @param preview - the settings
686
+ * @returns each node's label size
687
+ */
688
+ function nodeRules(
689
+ node: GephiTargetRules,
690
+ snapshot: GraphSnapshot,
691
+ channels: readonly number[][],
692
+ nodes: GephiNodeValues,
693
+ preview: GephiPreview,
694
+ ): number[] {
695
+ const nodeIndices = Array.from({ length: snapshot.nodeCount }, (_, i) => i);
696
+ // a node's alpha is drawn only under node.per.node.opacity, times node.opacity, on its fill and its border alike:
697
+ // a node not opaque is a fill of radius 0.84 s and a separate ring out to s, both at that alpha
698
+ const perNode = preview.on("node.per.node.opacity");
699
+ const alpha = channels.map((c) => ((perNode ? c[3] : 255) / 255) * (preview.num("node.opacity") / 100));
700
+ const translucent = alpha.map((a) => (a < 1 ? a : null));
701
+ perElementDefault(node, "node", ["fillOpacity", "preview-opacity"], translucent, "NODE_OPACITY");
702
+ perElementDefault(node, "node", ["borderOpacity", "preview-border-opacity"], translucent, "NODE_OPACITY");
703
+ // NodeRenderer: the border is DependantColor DARKER by default, half of each channel (+-1 from Gephi's float math)
704
+ const borderMode = preview.text("node.border.color");
705
+ perElementDefault(
706
+ node,
707
+ "node",
708
+ ["borderColor", "border-shade"],
709
+ channels.map((c) => hexOf(dependantColor(borderMode, c) ?? c.map((v) => Math.floor(v / 2)))),
710
+ "NODE_FILL_SHADE",
711
+ );
712
+ // A node of size s is a circle of radius 0.92 s with a 0.16 s border: 0.08 of its 2 s width, or node.border.width
713
+ // under node.border.fixed. Its label is the label font's size in proportion to the node's, round(size / 20 * s)
714
+ // (NODE_LABEL_PROPORTIONAL_SIZE; Arial 12 makes round(0.6 s)), never under 1.
715
+ const fixed = preview.on("node.border.fixed") ? preview.num("node.border.width") : null;
716
+ perElementDefault(
717
+ node,
718
+ "node",
719
+ ["borderWidth", "size-border"],
720
+ nodeIndices.map((i) => {
721
+ // a fixed border is no wider than the node's size (radius): a size-3 node takes a border of 4 as 3
722
+ return fixed === null ? 0.08 * nodeWidth(nodes, i) : Math.min(fixed, nodeWidth(nodes, i) / 2);
723
+ }),
724
+ "NODE_SIZE",
725
+ );
726
+ const font = preview.font("node");
727
+ const labelSizes = nodeIndices.map((i) =>
728
+ preview.on("node.label.proportinalSize")
729
+ ? Math.max(1, Math.round((font.size / 40) * nodeWidth(nodes, i)))
730
+ : font.size,
731
+ );
732
+ perElementDefault(node, "node", ["labelSize", "size-label"], labelSizes, "NODE_SIZE");
733
+ return labelSizes;
734
+ }
735
+
736
+ /**
737
+ * The node label rules the Preview settings make beyond the size: color, outline, font and overlap avoidance.
738
+ * @param node - the node rules, changed in place
739
+ * @param channels - each node's color channels
740
+ * @param sizes - each node's label size
741
+ * @param preview - the settings
742
+ * @param settled - whether the labels overlap avoidance hides are already left out
743
+ */
744
+ function nodeLabelRules(
745
+ node: GephiTargetRules,
746
+ channels: readonly number[][],
747
+ sizes: readonly number[],
748
+ preview: GephiPreview,
749
+ settled: boolean,
750
+ ): void {
751
+ const color = preview.text("node.label.color");
752
+ if (color !== "#000000" && color !== "original") {
753
+ perElementDefault(
754
+ node,
755
+ "node",
756
+ ["labelColor", "preview-label-color"],
757
+ channels.map((c) => hexOf(dependantColor(color, c) ?? [0, 0, 0])),
758
+ "NODE_LABEL_COLOR",
759
+ );
399
760
  }
400
- const label = snapshot.nodes.names().find((name) => snapshot.nodes.get(name)?.meta.role === "label");
401
- if (label !== undefined && node.label === undefined) {
402
- rules.push({
403
- id: "node.tool.label",
761
+ labelOutline(node, "node", channels, sizes, preview);
762
+ const font = preview.font("node");
763
+ everyElement(node, "node", "preview-label", fontValues(font, preview.on("node.label.customFont")));
764
+ // ponytail: where a node has no stored position Gephi's own grid (gephiOverlapHidden()) cannot be run; avoiding
765
+ // overlap, larger first, is that test without the grid's rounding. A rule only while it is on: graphty-element
766
+ // has no value that turns a lower rule's overlap avoidance off again.
767
+ if (preview.on("node.label.avoidOverlap") && !settled) {
768
+ node.columns.set(
769
+ AVOID_OVERLAP_KEY,
770
+ sizes.map(() => true),
771
+ );
772
+ node.rules.push({
773
+ id: "node.tool.label-avoid-overlap",
404
774
  target: "node",
405
- role: "passthrough",
775
+ role: "group",
406
776
  origin: "tool",
407
- where: { has: { data: label } },
408
- map: { label: { kind: "passthrough", by: { data: label } } },
409
- facts: { reason: "NODE_NAME" },
777
+ where: { has: { style: AVOID_OVERLAP_KEY } },
778
+ set: { labelAvoidOverlap: true },
410
779
  });
411
780
  }
412
- return { rules, columns };
413
781
  }
414
782
 
415
783
  /**
416
- * The edge rules of Gephi's defaults: the target arrow of a directed edge, the mixed color and the weight's width.
784
+ * Gephi's alpha for a Preview opacity in percent: Java's `Color` keeps it as one of 256 steps, cut down to a whole
785
+ * step (`labels-p10`'s 30 is drawn 76 / 255, not 77).
786
+ * @param percent - the opacity, 0 to 100
787
+ * @returns the alpha, 0 to 1
788
+ */
789
+ function gephiAlpha(percent: number): number {
790
+ // ponytail: 1e-9 keeps a step that floating point lands a hair under (0.4 x 255) on its step
791
+ return Math.floor((Math.min(Math.max(percent, 0), 100) / 100) * 255 + 1e-9) / 255;
792
+ }
793
+
794
+ /**
795
+ * The label box of `node.label.box`: Gephi strokes an unfilled box round the label, 0.08 of the node's size wide, in
796
+ * the color `node.label.box.color` derives from the node's and at `node.label.box.opacity` (`gexf-specimen-labels-p11`,
797
+ * `-p12`, `-p13`, `-p20`, `-p21`). The box is the text's own bounds -- its advance width and its font's ascent plus
798
+ * descent, with no leading -- grown by the stroke's width, so the stroke's inner edge lies on the text's bounds
799
+ * (`labels-p11`: a 15 px "Label" is 40.47 x 17.46 inside a 2.0 stroke): no padding, a line height of 1.
800
+ * @param node - the node rules, changed in place
801
+ * @param channels - each node's color channels
802
+ * @param nodes - the node values
803
+ * @param preview - the settings
804
+ */
805
+ function labelBox(
806
+ node: GephiTargetRules,
807
+ channels: readonly number[][],
808
+ nodes: GephiNodeValues,
809
+ preview: GephiPreview,
810
+ ): void {
811
+ if (!preview.on("node.label.box")) {
812
+ return;
813
+ }
814
+ const mode = preview.text("node.label.box.color");
815
+ perElementDefault(
816
+ node,
817
+ "node",
818
+ ["labelBorderColor", "preview-box-color"],
819
+ channels.map((c) => hexOf(dependantColor(mode, c) ?? c)),
820
+ "LABEL_BOX",
821
+ );
822
+ perElementDefault(
823
+ node,
824
+ "node",
825
+ ["labelBorderWidth", "preview-box-width"],
826
+ channels.map((_, i) => 0.04 * nodeWidth(nodes, i)),
827
+ "LABEL_BOX",
828
+ );
829
+ everyElement(node, "node", "preview-box", {
830
+ labelBorderOpacity: gephiAlpha(preview.num("node.label.box.opacity")),
831
+ labelPadding: 0,
832
+ labelLineHeight: 1,
833
+ });
834
+ }
835
+
836
+ /**
837
+ * The label font values a custom font sets.
838
+ * @param font - the font
839
+ * @param custom - whether the font is custom
840
+ * @returns the values
841
+ */
842
+ function fontValues(font: GephiFont, custom: boolean): Record<string, StyleValue> {
843
+ if (!custom) {
844
+ return {};
845
+ }
846
+ return {
847
+ labelFont: font.family,
848
+ ...(font.bold ? { labelWeight: "bold" } : {}),
849
+ ...(font.italic ? { labelItalic: true } : {}),
850
+ };
851
+ }
852
+
853
+ /**
854
+ * The label outline of `<target>.label.outline.size` and `.color`: a stroke size / 32 of the label's size wide, round
855
+ * each letter, in the color its mode derives from the element's color and at `.outline.opacity` (Gephi's default 80;
856
+ * `gexf-specimen-labels-p9`, `-p10`, `-p17` .. `-p19`, `edge-labels-p5`, `-p6`).
857
+ * @param out - the rules, changed in place
858
+ * @param target - nodes or edges
859
+ * @param colors - each element's color channels
860
+ * @param sizes - each element's label size
861
+ * @param preview - the settings
862
+ */
863
+ function labelOutline(
864
+ out: GephiTargetRules,
865
+ target: StyleTarget,
866
+ colors: readonly number[][],
867
+ sizes: readonly number[],
868
+ preview: GephiPreview,
869
+ ): void {
870
+ const size = preview.num(`${target}.label.outline.size`);
871
+ if (size <= 0) {
872
+ return;
873
+ }
874
+ const mode = preview.text(`${target}.label.outline.color`);
875
+ perElementDefault(
876
+ out,
877
+ target,
878
+ ["labelOutlineWidth", "preview-outline-width"],
879
+ sizes.map((s) => (size / 32) * s),
880
+ "LABEL_OUTLINE",
881
+ );
882
+ perElementDefault(
883
+ out,
884
+ target,
885
+ ["labelOutlineColor", "preview-outline-color"],
886
+ colors.map((c) => hexOf(dependantColor(mode, c) ?? [255, 255, 255])),
887
+ "LABEL_OUTLINE",
888
+ );
889
+ everyElement(out, target, "preview-outline", {
890
+ labelOutlineOpacity: gephiAlpha(preview.num(`${target}.label.outline.opacity`)),
891
+ });
892
+ }
893
+
894
+ /**
895
+ * The node labels Gephi's label overlap avoidance hides (`node.label.avoidOverlap`, Gephi 0.11
896
+ * NodeLabelRenderer.preProcess): largest font first, each label's box -- its Dialog advance width by its line height,
897
+ * centered on its node -- marks the cells of a `node.label.overlapGridSize` grid over the nodes' bounds, and a label
898
+ * any of whose cells an earlier one marked is hidden. A label's font size is 12 x 0.05 x its node's size (proportional
899
+ * size) or the font's, measured in the float size of the last label of the same whole size (Gephi's font cache),
900
+ * its labels taken largest node first.
901
+ * Decided where every node has a stored position; elsewhere graphty-element lays the graph out, so null.
417
902
  * @param snapshot - the graph
418
- * @param node - the node values read from the file
419
- * @param edge - the edge values read from the file
420
- * @param budget - the work budget
421
- * @returns the rules and their columns
903
+ * @param labels - each node's label as drawn
904
+ * @param widths - each node's width (twice its size), or undefined for Gephi's default
905
+ * @param preview - the settings
906
+ * @returns whether each label is hidden, or null
422
907
  */
423
- function gephiEdgeRules(
908
+ function gephiOverlapHidden(
424
909
  snapshot: GraphSnapshot,
425
- node: Readonly<Record<string, readonly (StyleValue | null)[]>>,
426
- edge: Readonly<Record<string, readonly (StyleValue | null)[]>>,
427
- budget: StyleReadContext["budget"],
428
- ): ToolRules {
429
- const rules: StyleRule[] = [];
430
- const columns = new Map<string, StyleColumn>();
431
- const directed = directedEdges(snapshot);
432
- if (directed.some(Boolean)) {
433
- columns.set(
910
+ labels: readonly (StyleValue | null)[],
911
+ widths: readonly (StyleValue | null)[] | undefined,
912
+ preview: GephiPreview,
913
+ ): boolean[] | null {
914
+ const centers = gephiCenters(snapshot);
915
+ if (centers.includes(null)) {
916
+ return null;
917
+ }
918
+ const f = Math.fround;
919
+ const grid = preview.num("node.label.overlapGridSize");
920
+ const proportional = preview.on("node.label.proportinalSize");
921
+ const base = f(preview.font("node").size * preview.num("node.label.scale"));
922
+ const nodeSizes = centers.map((_, i) => {
923
+ const w = widths?.[i];
924
+ return f((typeof w === "number" ? w : GEPHI_NODE_WIDTH) / 2);
925
+ });
926
+ const sizes = nodeSizes.map((nodeSize) =>
927
+ proportional ? f(f(base * nodeSize) * f(0.05)) : f(base * f(1 + f(nodeSize * f(0.00001)))),
928
+ );
929
+ // Gephi's label items come largest node first (file order among equals; measured on six corpus files)
930
+ const items = sizes.map((_, i) => i).sort((a, b) => nodeSizes[b] - nodeSizes[a]);
931
+ // Font.deriveFont(size).getSize() rounds; the cache keeps the last font of each whole size
932
+ const cached = new Map<number, number>();
933
+ items.forEach((i) => cached.set(Math.round(sizes[i]), sizes[i]));
934
+ // NodeItem Y is the file's y turned over
935
+ const at = centers.map((c) => [c?.[0] ?? 0, -(c?.[1] ?? 0)] as const);
936
+ // loops, not Math.min(...): a spread of every node overflows the call stack on a large graph
937
+ let [loX, loY, hiX, hiY] = [Infinity, Infinity, -Infinity, -Infinity];
938
+ for (const [x, y] of at) {
939
+ [loX, loY, hiX, hiY] = [Math.min(loX, x), Math.min(loY, y), Math.max(hiX, x), Math.max(hiY, y)];
940
+ }
941
+ const [minX, minY] = [loX - grid, loY - grid];
942
+ const cols = Math.ceil((hiX + grid - minX) / grid);
943
+ const rows = Math.ceil((hiY + grid - minY) / grid);
944
+ const taken = new Set<number>();
945
+ const hidden = labels.map(() => false);
946
+ const order = [...items].sort((a, b) => sizes[b] - sizes[a]);
947
+ for (const i of order) {
948
+ const label = labels[i];
949
+ if (typeof label !== "string" || label.trim() === "") {
950
+ continue;
951
+ }
952
+ const size = cached.get(Math.round(sizes[i])) ?? sizes[i];
953
+ const half = [(dialogWidth(label) * size) / 2, (DIALOG_LINE_HEIGHT * size) / 2] as const;
954
+ const cells = gridCells(
955
+ { min: [minX, minY], size: grid, cols, rows },
956
+ [at[i][0] - half[0], at[i][1] - half[1]],
957
+ [at[i][0] + half[0], at[i][1] + half[1]],
958
+ );
959
+ if (cells.some((k) => taken.has(k))) {
960
+ hidden[i] = true;
961
+ } else {
962
+ cells.forEach((k) => taken.add(k));
963
+ }
964
+ }
965
+ return hidden;
966
+ }
967
+
968
+ /**
969
+ * The cells of a grid a box covers, as Gephi's label grid counts them (each corner's cell truncated, kept on the grid).
970
+ * @param grid - the grid: its lowest corner, cell size and cell counts
971
+ * @param grid.min - its lowest x and y
972
+ * @param grid.size - its cell size
973
+ * @param grid.cols - its columns
974
+ * @param grid.rows - its rows
975
+ * @param lo - the box's lowest x and y
976
+ * @param hi - the box's highest x and y
977
+ * @returns the cell indices, row by row
978
+ */
979
+ function gridCells(
980
+ grid: {
981
+ readonly min: readonly [number, number];
982
+ readonly size: number;
983
+ readonly cols: number;
984
+ readonly rows: number;
985
+ },
986
+ lo: readonly [number, number],
987
+ hi: readonly [number, number],
988
+ ): number[] {
989
+ const cell = (v: number, axis: 0 | 1): number =>
990
+ Math.min((axis === 0 ? grid.cols : grid.rows) - 1, Math.max(0, Math.trunc((v - grid.min[axis]) / grid.size)));
991
+ const cells: number[] = [];
992
+ for (let r = cell(lo[1], 1); r <= cell(hi[1], 1); r++) {
993
+ for (let c = cell(lo[0], 0); c <= cell(hi[0], 0); c++) {
994
+ cells.push(r * grid.cols + c);
995
+ }
996
+ }
997
+ return cells;
998
+ }
999
+
1000
+ /** Gephi's `edge.arc-curveness`: a curved edge is an arc of radius its nodes' distance over it (code only, 1.2). */
1001
+ const GEPHI_ARC_CURVENESS = 1.2;
1002
+
1003
+ /**
1004
+ * Each node's stored center, its viz:position; null without one (graphty-element lays such a node out, where Gephi
1005
+ * would put it at (0, 0)).
1006
+ * @param snapshot - the graph
1007
+ * @returns x and y by node
1008
+ */
1009
+ function gephiCenters(snapshot: GraphSnapshot): ([number, number] | null)[] {
1010
+ const position = snapshot.nodes.byRole("position");
1011
+ return Array.from({ length: snapshot.nodeCount }, (_, i) => {
1012
+ const v = position?.isSet(i) === true ? (position.value(i) as ArrayLike<number>) : null;
1013
+ return v === null ? null : [v[0] || 0, v[1] || 0];
1014
+ });
1015
+ }
1016
+
1017
+ /**
1018
+ * The curved edges Gephi draws no line for: its arc (radius distance / 1.2) is cut back at each end by a chord as long
1019
+ * as that end's node radius (its size), plus `edge.radius`, plus at the target of a directed edge its arrowhead
1020
+ * (`arrow.size` x its thickness); where the two cuts meet or pass each other, or a cut is longer than the arc, the
1021
+ * nodes swallow the edge and no line is drawn (Gephi 0.11 EdgeRenderer.CurvedEdgeRenderer.Helper,
1022
+ * computeTruncateAngle; gexf-cns-wos: 24 edges between overlapping nodes). Its arrowhead is still drawn, unless its
1023
+ * nodes are at one place (ArrowRenderer).
1024
+ * @param snapshot - the graph
1025
+ * @param nodes - the node values (their widths)
1026
+ * @param directed - whether each edge is drawn directed
1027
+ * @param thickness - each edge's drawn thickness
1028
+ * @param preview - the settings
1029
+ * @returns for each edge, "line" when only its line is swallowed, "all" when its nodes are at one place, else null
1030
+ */
1031
+ function swallowedEdges(
1032
+ snapshot: GraphSnapshot,
1033
+ nodes: GephiNodeValues,
1034
+ directed: readonly boolean[],
1035
+ thickness: readonly number[],
1036
+ preview: GephiPreview,
1037
+ ): ("line" | "all" | null)[] {
1038
+ const centers = gephiCenters(snapshot);
1039
+ const edgeRadius = preview.num("edge.radius");
1040
+ const arrowSize = preview.num("arrow.size");
1041
+ const arc = 2 * Math.asin(Math.min(1, GEPHI_ARC_CURVENESS / 2));
1042
+ return Array.from({ length: snapshot.edgeCount }, (_, e) => {
1043
+ const [a, b] = [snapshot.edgeSource(e), snapshot.edgeTarget(e)];
1044
+ const [pa, pb] = [centers[a], centers[b]];
1045
+ if (a === b || pa === null || pb === null) {
1046
+ return null;
1047
+ }
1048
+ const d = Math.hypot(pb[0] - pa[0], pb[1] - pa[1]);
1049
+ if (d === 0) {
1050
+ return "all";
1051
+ }
1052
+ const r = d / GEPHI_ARC_CURVENESS;
1053
+ // the angle a cut of chord length c takes off the arc; past the arc's length, more than the whole arc
1054
+ const cut = (c: number): number =>
1055
+ c >= r * arc ? Infinity : 2 * Math.atan2(c / 2, Math.sqrt(r * r - (c / 2) * (c / 2)));
1056
+ const source = edgeRadius + nodeWidth(nodes, a) / 2;
1057
+ const target = edgeRadius + nodeWidth(nodes, b) / 2 + (directed[e] ? arrowSize * thickness[e] : 0);
1058
+ return cut(source) + cut(target) >= arc ? "line" : null;
1059
+ });
1060
+ }
1061
+
1062
+ /** How many points a Gephi self-loop's circle is drawn through. */
1063
+ const SELF_LOOP_STEPS = 96;
1064
+
1065
+ /**
1066
+ * Gephi's self-loops as bends round their node: a circle up and to the right of it, centered `r` right of and `r`
1067
+ * above the node's center, of radius `r` = half the node's size (a radius) plus a third of the loop's stroke, which is
1068
+ * 1.3 times the edge's weight (gephi PreviewPlugin EdgeRenderer, SelfLoopEdgeRenderer; measured on the GEXF specimen
1069
+ * sheets and gexf-graphology-rio: r = 0.5435 x the drawn radius + 0.33 x the stroke). The circle runs from the side
1070
+ * facing the node all the way round; its part inside the node is not drawn.
1071
+ * @param snapshot - the graph
1072
+ * @param thickness - each edge's drawn thickness
1073
+ * @param hidden - whether each edge is not drawn
1074
+ * @returns each loop's bends, as fractions of its node's half size; null for any other edge
1075
+ */
1076
+ function selfLoopBends(
1077
+ snapshot: GraphSnapshot,
1078
+ thickness: readonly number[],
1079
+ hidden: readonly boolean[],
1080
+ ): (StyleValue | null)[] {
1081
+ const sizes = vizColumn(snapshot, "node", "size");
1082
+ const sizeOf = (n: number): number => {
1083
+ const v = sizes === null ? null : Number(plainCell(snapshot.nodes.value(sizes, n)));
1084
+ return v !== null && Number.isFinite(v) && v > 0 ? v : GEPHI_NODE_WIDTH / 2;
1085
+ };
1086
+ const fraction = (v: number): string => String(Math.round(v * 1e4) / 1e4);
1087
+ return Array.from({ length: snapshot.edgeCount }, (_, e) => {
1088
+ const n = snapshot.edgeSource(e);
1089
+ if (n !== snapshot.edgeTarget(e) || hidden[e]) {
1090
+ return null;
1091
+ }
1092
+ const size = sizeOf(n);
1093
+ const r = (0.5 * size + 0.33 * SELF_LOOP_THICKNESS * thickness[e]) / size;
1094
+ const points: string[] = [];
1095
+ for (let k = 0; k <= SELF_LOOP_STEPS; k++) {
1096
+ // from the point facing the node's center (225 degrees), clockwise all the way round
1097
+ const a = (5 * Math.PI) / 4 - (2 * Math.PI * k) / SELF_LOOP_STEPS;
1098
+ points.push(`${fraction(r + r * Math.cos(a))},${fraction(r + r * Math.sin(a))}`);
1099
+ }
1100
+ return points.join(" ");
1101
+ });
1102
+ }
1103
+
1104
+ /**
1105
+ * The edge rules: arrows, thickness, the edges not drawn, color and opacity, curves and labels.
1106
+ * @param edge - the edge rules, changed in place
1107
+ * @param snapshot - the graph
1108
+ * @param channels - each node's color channels
1109
+ * @param nodes - the node values (their widths)
1110
+ * @param edges - each edge's own color and width
1111
+ * @param gexf - the GEXF drawing, or undefined
1112
+ * @param preview - the settings
1113
+ */
1114
+ function edgeRules(
1115
+ edge: GephiTargetRules,
1116
+ snapshot: GraphSnapshot,
1117
+ channels: readonly number[][],
1118
+ nodes: GephiNodeValues,
1119
+ edges: GephiEdgeValues,
1120
+ gexf: GephiDrawing | undefined,
1121
+ preview: GephiPreview,
1122
+ ): void {
1123
+ const drawn = gephiEdges(snapshot, gexf !== undefined);
1124
+ const arrowSize = preview.num("arrow.size");
1125
+ if (drawn.directed.some(Boolean) && arrowSize > 0) {
1126
+ edge.columns.set(
434
1127
  DIRECTED_KEY,
435
- directed.map((d) => (d ? true : null)),
1128
+ drawn.directed.map((d) => (d ? true : null)),
436
1129
  );
437
- rules.push({
1130
+ // arrow.size scales the arrowhead from its default 3 (gexf-specimen-arrows-p2); 0 draws none (-p3)
1131
+ edge.rules.push({
438
1132
  id: "edge.tool.arrow",
439
1133
  target: "edge",
440
1134
  role: "group",
441
1135
  origin: "tool",
442
1136
  where: { has: { style: DIRECTED_KEY } },
443
- set: { targetArrow: "triangle" },
1137
+ set: { targetArrow: "triangle", ...(arrowSize === 3 ? {} : { arrowSize: arrowSize / 3 }) },
444
1138
  });
445
1139
  }
446
- // Preview draws an edge in the mean of its two nodes' colors. graphty-element cannot bind an edge's color to its
447
- // nodes' drawn colors yet, so the color is frozen here; replace this column with that binding once the element
448
- // has it (tracking issue "graphty-element: bind an edge's color to its source node's drawn color").
449
- const fill = (i: number): StyleValue => node.fill?.[i] ?? GEPHI_NODE_FILL;
450
- const mixed = withoutOwn(edge.color, snapshot.edgeCount, (e) =>
451
- mix(fill(snapshot.edgeSource(e)), fill(snapshot.edgeTarget(e))),
1140
+ // Gephi draws an edge as thick as its weight (gephiEdges(): merged and shifted); a width of its own is the file's
1141
+ const hidden = preview.on("edge.show") ? drawn.hidden : drawn.hidden.map(() => true);
1142
+ const thickness = edgeThickness(
1143
+ drawn.weight,
1144
+ hidden.map((h) => !h),
1145
+ preview,
452
1146
  );
453
- const uncolored = mixed.filter((v) => v !== null).length;
454
- budget.spend("edge", snapshot.edgeCount);
455
- // Gephi draws an edge as thick as its weight (1 for an edge with none); a width of its own is the file's
456
- // The weights come from the snapshot's own weights (the role column exists only when some edge has none), read
457
- // as the shortest decimal of their dtype. A weight of 0 or below is drawn 1 wide, so the edge stays visible.
458
- // An undirected edge in a directed graph is one edge in the file and two halves here: both take the first's.
459
- const first = firstHalf(snapshot);
460
- const weights = explicitWeights(snapshot);
461
- const weightWidth = withoutOwn(edge.width, snapshot.edgeCount, (e) => {
462
- const w = Number(weights.text(first(e)) ?? 1);
463
- return Number.isFinite(w) && w > 0 ? w : 1;
1147
+ perElementDefault(
1148
+ edge,
1149
+ "edge",
1150
+ WEIGHT_WIDTH,
1151
+ // Gephi's self-loop is 1.3 times as thick (measured: weight 1 draws 1.3, 3.25 draws 4.225)
1152
+ withoutOwn(edges.width, snapshot.edgeCount, (e) =>
1153
+ snapshot.edgeSource(e) === snapshot.edgeTarget(e) ? SELF_LOOP_THICKNESS * thickness[e] : thickness[e],
1154
+ ),
1155
+ "EDGE_WEIGHT",
1156
+ );
1157
+ perElementDefault(edge, "edge", ["bends", "self-loop"], selfLoopBends(snapshot, thickness, hidden), "NODE_SIZE");
1158
+ // a curved edge its nodes (and its arrowhead) swallow draws no line; its arrowhead is still drawn
1159
+ const swallowed = preview.on("edge.curved")
1160
+ ? swallowedEdges(snapshot, nodes, drawn.directed, thickness, preview)
1161
+ : hidden.map(() => null);
1162
+ // the edges Gephi does not draw: one of another direction than the graph's, one merged into a parallel edge, or a
1163
+ // swallowed one with no arrowhead to keep
1164
+ hidden.forEach((h, e) => {
1165
+ const arrow = drawn.directed[e] && arrowSize > 0 && swallowed[e] === "line";
1166
+ hidden[e] = h || (swallowed[e] !== null && !arrow);
464
1167
  });
465
- const unsized = weightWidth.filter((v) => v !== null).length;
466
- if (unsized > 0) {
467
- columns.set(WEIGHT_WIDTH_KEY, weightWidth);
468
- rules.push({
469
- id: "edge.tool.weight-width",
1168
+ if (hidden.some(Boolean)) {
1169
+ edge.columns.set(
1170
+ HIDDEN_KEY,
1171
+ hidden.map((h) => (h ? true : null)),
1172
+ );
1173
+ edge.rules.push({
1174
+ id: "edge.tool.gephi-hidden",
470
1175
  target: "edge",
471
- role: "passthrough",
1176
+ role: "group",
472
1177
  origin: "tool",
473
- where: { has: { style: WEIGHT_WIDTH_KEY } },
474
- map: { width: { kind: "passthrough", by: { style: WEIGHT_WIDTH_KEY } } },
475
- facts: { elements: unsized, reason: "EDGE_WEIGHT" },
1178
+ where: { has: { style: HIDDEN_KEY } },
1179
+ set: { visible: false },
476
1180
  });
477
1181
  }
478
- if (uncolored > 0) {
479
- columns.set(MIXED_COLOR_KEY, mixed);
480
- rules.push({
481
- id: "edge.tool.mixed-color",
482
- target: "edge",
483
- role: "passthrough",
484
- origin: "tool",
485
- where: { has: { style: MIXED_COLOR_KEY } },
486
- map: { color: { kind: "passthrough", by: { style: MIXED_COLOR_KEY } } },
487
- facts: { elements: uncolored, reason: "END_NODES_COLOR" },
488
- });
1182
+ const colors = edgeColors(snapshot, channels, gexf, preview);
1183
+ perElementDefault(
1184
+ edge,
1185
+ "edge",
1186
+ ["color", MIXED_COLOR_KEY],
1187
+ withoutOwn(edges.color, snapshot.edgeCount, (e) => hexOf(colors[e])),
1188
+ "END_NODE_COLORS",
1189
+ );
1190
+ perElementDefault(
1191
+ edge,
1192
+ "edge",
1193
+ ["opacity", "end-opacity"],
1194
+ withoutOwn(edges.color, snapshot.edgeCount, (e) => colors[e][3] / 255).map((v, e) => {
1195
+ // a swallowed edge Gephi draws only the arrowhead of draws no line
1196
+ if (swallowed[e] !== null && !hidden[e]) {
1197
+ return 0;
1198
+ }
1199
+ return v === 1 ? null : v;
1200
+ }),
1201
+ "END_NODE_COLORS",
1202
+ );
1203
+ everyElement(edge, "edge", "preview-curve", preview.on("edge.curved") ? {} : { curved: false });
1204
+ // Gephi's `edge.radius` leaves that much empty between each node and its edges' ends, arrowheads too
1205
+ const nodeGap = preview.num("edge.radius");
1206
+ everyElement(edge, "edge", "preview-radius", nodeGap > 0 ? { nodeGap } : {});
1207
+ edgeLabelRules(edge, colors, gexf, preview);
1208
+ }
1209
+
1210
+ /**
1211
+ * Each edge's color and alpha (0..255) under `edge.color` and `edge.opacity`: MIXED (the default) is each channel,
1212
+ * alpha too, the truncated mean of the two end nodes'; `source` and `target` are that node's; `original` is the edge's
1213
+ * own viz color, black without one; `#rrggbb` is that color, opaque (`gexf-specimen-edges-lines-p3` .. `-p7`).
1214
+ * graphty-element cannot bind an edge's color to its nodes' drawn colors, so the color is frozen here.
1215
+ * @param snapshot - the graph
1216
+ * @param channels - each node's color channels
1217
+ * @param gexf - the GEXF drawing, or undefined
1218
+ * @param preview - the settings
1219
+ * @returns each edge's r, g, b and alpha
1220
+ */
1221
+ function edgeColors(
1222
+ snapshot: GraphSnapshot,
1223
+ channels: readonly number[][],
1224
+ gexf: GephiDrawing | undefined,
1225
+ preview: GephiPreview,
1226
+ ): number[][] {
1227
+ const mode = preview.text("edge.color");
1228
+ const factor = preview.num("edge.opacity") / 100;
1229
+ const own = (e: number): number[] => {
1230
+ const c = gexf?.original?.color?.[e];
1231
+ const a = gexf?.original?.opacity?.[e];
1232
+ return nodeChannels(typeof c === "string" ? c : GEPHI_NODE_FILL, typeof a === "number" ? a : null);
1233
+ };
1234
+ const custom = dependantColor(mode, [0, 0, 0]);
1235
+ return Array.from({ length: snapshot.edgeCount }, (_, e) => {
1236
+ const s = channels[snapshot.edgeSource(e)];
1237
+ const t = channels[snapshot.edgeTarget(e)];
1238
+ let c: number[];
1239
+ if (mode === "source") {
1240
+ c = [...s];
1241
+ } else if (mode === "target") {
1242
+ c = [...t];
1243
+ } else if (mode === "original") {
1244
+ c = own(e);
1245
+ } else if (mode.startsWith("#") && custom !== null) {
1246
+ c = [...custom, 255];
1247
+ } else {
1248
+ c = s.map((v, k) => Math.floor((v + t[k]) / 2));
1249
+ }
1250
+ return factor === 1 ? c : [c[0], c[1], c[2], c[3] * factor];
1251
+ });
1252
+ }
1253
+
1254
+ /**
1255
+ * The edge label rules of `edge.label.show`: the font's size (not in proportion to anything), color, outline and
1256
+ * font (`gexf-specimen-edge-labels-p2` .. `-p15`).
1257
+ * @param edge - the edge rules, changed in place
1258
+ * @param colors - each edge's color and alpha
1259
+ * @param gexf - the GEXF drawing, or undefined
1260
+ * @param preview - the settings
1261
+ */
1262
+ function edgeLabelRules(
1263
+ edge: GephiTargetRules,
1264
+ colors: readonly number[][],
1265
+ gexf: GephiDrawing | undefined,
1266
+ preview: GephiPreview,
1267
+ ): void {
1268
+ if (gexf?.edgeLabels === undefined || !preview.on("edge.label.show")) {
1269
+ return;
1270
+ }
1271
+ const font = preview.font("edge");
1272
+ const color = preview.text("edge.label.color");
1273
+ if (color !== "original") {
1274
+ perElementDefault(
1275
+ edge,
1276
+ "edge",
1277
+ ["labelColor", "preview-label-color"],
1278
+ colors.map((c) => hexOf(dependantColor(color, c) ?? [0, 0, 0])),
1279
+ "EDGE_LABEL_COLOR",
1280
+ );
489
1281
  }
490
- return { rules, columns };
1282
+ labelOutline(
1283
+ edge,
1284
+ "edge",
1285
+ colors,
1286
+ colors.map(() => font.size),
1287
+ preview,
1288
+ );
1289
+ // Gephi centers an edge label on its line's middle (gexf-specimen-edge-labels-p2: 0.04 of the font off it)
1290
+ everyElement(edge, "edge", "preview-label", {
1291
+ labelSize: font.size,
1292
+ labelPosition: "center",
1293
+ ...fontValues(font, preview.on("edge.label.customFont")),
1294
+ });
491
1295
  }
492
1296
 
493
1297
  /**
@@ -506,24 +1310,6 @@ function gephiMix(a: string, b: string): string {
506
1310
  return `#${out.toString(16).padStart(6, "0")}`;
507
1311
  }
508
1312
 
509
- /**
510
- * Preview's "darker" border color: each channel times 0.498, rounded (`ColorUtils.java` lines 22-34).
511
- * @param c - the fill, `#rrggbb`
512
- * @returns the border color
513
- */
514
- function gephiDarker(c: string): string {
515
- const x = Number.parseInt(c.slice(1), 16);
516
- let out = 0;
517
- for (const shift of [16, 8, 0]) {
518
- out |= Math.min(255, Math.round(((x >> shift) & 255) * GEPHI_BORDER_DARKEN)) << shift;
519
- }
520
- return `#${out.toString(16).padStart(6, "0")}`;
521
- }
522
-
523
- const mix = (a: StyleValue, b: StyleValue): StyleValue => gephiMix(String(a), String(b));
524
- const darker = (c: StyleValue): StyleValue => gephiDarker(String(c));
525
- const round6 = (x: number): number => Math.round(x * 1e6) / 1e6;
526
-
527
1313
  /**
528
1314
  * The edge whose source Gephi draws for each edge: an undirected edge in a directed graph is one edge in the file
529
1315
  * and two halves here, and the second half takes the first half's.
@@ -557,10 +1343,10 @@ function withoutOwn(
557
1343
  }
558
1344
 
559
1345
  /**
560
- * The styles of a GEXF file: each element's viz values as Gephi draws them, with Gephi Preview's defaults beneath
561
- * (black size-10 discs with a darker border, curved edges, an arrow at the target of every directed edge, the mixed
562
- * color of its nodes on every edge without a color of its own) and each node's label (see gephiRules()); plus a
563
- * `graphty.styles` block the file holds in `<meta>`.
1346
+ * The styles of a GEXF file as Gephi's preview draws it: each node's label, fill and size, Gephi's defaults beneath
1347
+ * (black size-10 discs, curved edges) and its per-element defaults (gephiRules()); the viz values Gephi does not draw
1348
+ * are left out (withoutUndrawn()); plus a `graphty.styles` block the file holds in `<meta>`, whose file keeps every
1349
+ * value.
564
1350
  * @param snapshot - the graph the import built
565
1351
  * @param context - the work budget and the block text the import kept
566
1352
  * @returns the styles
@@ -569,18 +1355,47 @@ export function gexfStyles(snapshot: GraphSnapshot, context: StyleReadContext):
569
1355
  const notes = new StyleNotes();
570
1356
  const node = vizValues(snapshot, "node", notes, context);
571
1357
  const edge = vizValues(snapshot, "edge", notes, context);
572
- const block = typeof context.kept === "string" ? context.kept : null;
573
- if (block !== null) {
1358
+ const { block, preview } = keptOf(context.kept);
1359
+ const nodeOpacity = node.fillOpacity;
1360
+ const original = { color: edge.color, opacity: edge.opacity };
1361
+ if (block === null) {
1362
+ withoutUndrawn(node, edge);
1363
+ } else {
574
1364
  exactFromBlock(snapshot, block, node, edge);
575
1365
  }
576
- const gephi = gephiRules(snapshot, node, edge, context.budget);
1366
+ const labels = drawnLabels(node.label, preview, "node", block !== null);
1367
+ const overlapHidden =
1368
+ block === null && labels !== undefined && preview.on("node.label.avoidOverlap")
1369
+ ? gephiOverlapHidden(snapshot, labels, node.width, preview)
1370
+ : null;
1371
+ overlapHidden?.forEach((hide, i) => {
1372
+ if (hide && labels !== undefined) {
1373
+ labels[i] = null;
1374
+ }
1375
+ });
1376
+ if (labels === undefined) {
1377
+ delete node.label;
1378
+ } else {
1379
+ node.label = labels;
1380
+ }
1381
+ const edgeLabels = drawnLabels(edgeLabelValues(snapshot), preview, "edge", block !== null);
1382
+ if (edgeLabels !== undefined) {
1383
+ edge.label = edgeLabels;
1384
+ }
1385
+ const rules = gephiRules(
1386
+ snapshot,
1387
+ { fill: node.fill, fillOpacity: nodeOpacity, width: node.width },
1388
+ { color: edge.color, width: edge.width },
1389
+ context.budget,
1390
+ { preview, original, edgeLabels, overlapSettled: overlapHidden !== null },
1391
+ );
577
1392
  return {
578
1393
  canonical: true,
579
1394
  dialect: "gexf",
580
1395
  tool: "gephi",
581
1396
  units: "relative",
582
- node: { values: node, ...gephi.node },
583
- edge: { values: edge, ...gephi.edge },
1397
+ node: { values: node, ...rules.node },
1398
+ edge: { values: edge, ...rules.edge },
584
1399
  notes: notes.list(),
585
1400
  opacityInColor: true,
586
1401
  block,
@@ -591,6 +1406,61 @@ export function gexfStyles(snapshot: GraphSnapshot, context: StyleReadContext):
591
1406
  };
592
1407
  }
593
1408
 
1409
+ /**
1410
+ * What the import kept for the styles: the `graphty.styles` block, and the Preview settings of the `gephiPreview`
1411
+ * option.
1412
+ * @param kept - the kept value: the block's text, or `{ block, gephiPreview }`
1413
+ * @returns the block (null without one) and the Preview settings
1414
+ */
1415
+ function keptOf(kept: unknown): { readonly block: string | null; readonly preview: GephiPreview } {
1416
+ if (typeof kept === "string") {
1417
+ return { block: kept, preview: new GephiPreview() };
1418
+ }
1419
+ if (typeof kept === "object" && kept !== null) {
1420
+ const { block, gephiPreview } = kept as { block?: unknown; gephiPreview?: Record<string, string> };
1421
+ return { block: typeof block === "string" ? block : null, preview: new GephiPreview(gephiPreview) };
1422
+ }
1423
+ return { block: null, preview: new GephiPreview() };
1424
+ }
1425
+
1426
+ /**
1427
+ * Each edge's `label` attribute.
1428
+ * @param snapshot - the graph
1429
+ * @returns the labels, or undefined when no edge has one
1430
+ */
1431
+ function edgeLabelValues(snapshot: GraphSnapshot): (StyleValue | null)[] | undefined {
1432
+ const col = snapshot.edges.byRole("label");
1433
+ if (col === null) {
1434
+ return undefined;
1435
+ }
1436
+ return Array.from({ length: snapshot.edgeCount }, (_, e) => {
1437
+ const v = plainCell(col.value(e));
1438
+ return typeof v === "string" && v.length > 0 ? v : null;
1439
+ });
1440
+ }
1441
+
1442
+ /**
1443
+ * Leaves out the viz values Gephi does not draw, for a file graphty did not write: its preview draws every node an
1444
+ * opaque disc (a node's alpha only tints its edges) and every edge a solid line in its end nodes' mixed color, as
1445
+ * thick as its weight (graphstore keeps no edge thickness or shape, and EdgeColor MIXED ignores an edge's color).
1446
+ * Every `viz:shape` is drawn a disc, an `image` shape too: Gephi Toolkit 0.11.3 draws no picture
1447
+ * (`gexf-specimen-images-charts`: a data: URI and a web URL both drawn as the node's colored disc).
1448
+ * @param node - the node values, changed in place
1449
+ * @param edge - the edge values, changed in place
1450
+ */
1451
+ function withoutUndrawn(
1452
+ node: Record<string, (StyleValue | null)[]>,
1453
+ edge: Record<string, (StyleValue | null)[]>,
1454
+ ): void {
1455
+ delete node.shape;
1456
+ delete node.image;
1457
+ delete node.fillOpacity;
1458
+ delete edge.color;
1459
+ delete edge.opacity;
1460
+ delete edge.width;
1461
+ delete edge.lineStyle;
1462
+ }
1463
+
594
1464
  /**
595
1465
  * For a file graphty wrote: where a viz value is the nearest GEXF value of what the `graphty.styles` block gives (a
596
1466
  * hexagon written as a disc, a width and height written as one size), the block's exact value is the truth, so a
@@ -607,49 +1477,33 @@ function exactFromBlock(
607
1477
  node: Record<string, (StyleValue | null)[]>,
608
1478
  edge: Record<string, (StyleValue | null)[]>,
609
1479
  ): void {
610
- const parsed = parseStyleBlock(text, styleFingerprint(snapshot));
611
- const ex = parsed.ok ? blockStyles(parsed.block, snapshot, "gexf") : null;
612
- if (ex === null) {
613
- return;
614
- }
615
- const exact = (
616
- values: Record<string, (StyleValue | null)[]>,
617
- target: StyleTarget,
618
- property: string,
619
- written: (v: StyleValue, i: number) => StyleValue | null,
620
- ): void => {
621
- const native = values[property];
622
- if (native === undefined) {
623
- return;
624
- }
625
- const want = resolveStyles(ex, target, property as never, snapshot);
626
- for (let i = 0; i < native.length; i++) {
627
- const w = want[i];
628
- // a size is written from the width and the height together: one the block leaves unset reads back too
629
- const writable = w !== null || property === "width" || property === "height";
630
- if (writable && native[i] !== w && native[i] !== null && native[i] === written(w as StyleValue, i)) {
631
- native[i] = w;
632
- }
633
- }
634
- };
635
- const width = resolveStyles(ex, "node", "width", snapshot);
636
- const height = resolveStyles(ex, "node", "height", snapshot);
637
- const size = (i: number): StyleValue | null => {
638
- const w = width[i];
639
- const h = height[i];
640
- return typeof w === "number" && typeof h === "number" ? Math.max(w, h) : (w ?? h);
641
- };
642
- const read = new Map([
1480
+ const shapeRead = new Map([
643
1481
  ["disc", "ellipse"],
644
1482
  ["square", "rectangle"],
645
1483
  ]);
646
- exact(node, "node", "shape", (v) => {
647
- const written = gexfNodeShape(String(v)).value;
648
- return read.get(written) ?? written;
649
- });
650
- exact(edge, "edge", "lineStyle", (v) => gexfEdgeShape(String(v)).value);
651
- exact(node, "node", "width", (_v, i) => size(i));
652
- exact(node, "node", "height", (_v, i) => size(i));
1484
+ const size = (want: ElementValues): StyleValue | null => {
1485
+ const w = want("width");
1486
+ const h = want("height");
1487
+ return typeof w === "number" && typeof h === "number" ? Math.max(w, h) : (w ?? h);
1488
+ };
1489
+ // what the viz element written for an element's block values reads back as
1490
+ const written: Readonly<Record<string, (want: ElementValues) => StyleValue | null>> = {
1491
+ shape: (want) => {
1492
+ const { value } = gexfNodeShape(String(want("shape")));
1493
+ return shapeRead.get(value) ?? value;
1494
+ },
1495
+ width: size,
1496
+ height: size,
1497
+ lineStyle: (want) => gexfEdgeShape(String(want("lineStyle"))).value,
1498
+ };
1499
+ takeFromBlock(snapshot, text, "gexf", (target) => ({
1500
+ values: target === "node" ? node : edge,
1501
+ properties: target === "node" ? ["shape", "width", "height"] : ["lineStyle"],
1502
+ readBack: (_i, want) => (property) => written[property](want),
1503
+ // a size is written from the width and the height together: one the block leaves unset reads back too
1504
+ take: (property, wanted, native) =>
1505
+ native !== null && (wanted !== null || property === "width" || property === "height"),
1506
+ }));
653
1507
  }
654
1508
 
655
1509
  // ============================================================ writing
@@ -718,7 +1572,7 @@ export function gexfStyledExport(
718
1572
  const s = nodeShapes[i];
719
1573
  return (
720
1574
  colorElement(fill[i], fillOpacity[i], indent) +
721
- (size === null ? "" : `${indent}<viz:size value="${String(size)}"/>\n`) +
1575
+ (size === null ? "" : `${indent}<viz:size value="${String(size / 2)}"/>\n`) +
722
1576
  shapeElement(s, s === "image" ? String(image[i]) : null, indent)
723
1577
  );
724
1578
  },