npm - @graphty/graph-io - Versions diffs - 0.3.48 → 0.3.49 - Mend

@graphty/graph-io 0.3.48 → 0.3.49

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (570) hide show

package/dist/chunks/{approximations-C2riR4NT.js → approximations-Bzn3L-je.js} +2 -2
package/dist/chunks/{approximations-C2riR4NT.js.map → approximations-Bzn3L-je.js.map} +1 -1
package/dist/chunks/bends-BGXjv_U4.js +129 -0
package/dist/chunks/bends-BGXjv_U4.js.map +1 -0
package/dist/chunks/{block-Cu22ewuS.js → block-iptrlMBb.js} +906 -164
package/dist/chunks/block-iptrlMBb.js.map +1 -0
package/dist/chunks/choose-CczZJaX_.js +717 -0
package/dist/chunks/choose-CczZJaX_.js.map +1 -0
package/dist/chunks/{codes-CV_Bhcyi.js → codes-BE2xir2k.js} +6 -2
package/dist/chunks/codes-BE2xir2k.js.map +1 -0
package/dist/chunks/{constants-D0LqcsLJ.js → constants-CKkYLPtt.js} +2 -2
package/dist/chunks/{constants-D0LqcsLJ.js.map → constants-CKkYLPtt.js.map} +1 -1
package/dist/chunks/{context-cgmmOxZ2.js → context-C3p0RQxR.js} +5 -4
package/dist/chunks/{context-cgmmOxZ2.js.map → context-C3p0RQxR.js.map} +1 -1
package/dist/chunks/{convert-BcQ8_jMo.js → convert-Ct2zelbQ.js} +7 -2
package/dist/chunks/convert-Ct2zelbQ.js.map +1 -0
package/dist/chunks/{credentials-BiQsnMTb.js → credentials-DXHx7nwR.js} +16 -14
package/dist/chunks/credentials-DXHx7nwR.js.map +1 -0
package/dist/chunks/{cx-export-BEeF6ymo.js → cx-export-Bt6NoqTQ.js} +3 -3
package/dist/chunks/{cx-export-BEeF6ymo.js.map → cx-export-Bt6NoqTQ.js.map} +1 -1
package/dist/chunks/descriptor-B28U25x4.js +60 -0
package/dist/chunks/descriptor-B28U25x4.js.map +1 -0
package/dist/chunks/{descriptor-BJ-W0Jd-.js → descriptor-DLA5kINx.js} +7 -2
package/dist/chunks/descriptor-DLA5kINx.js.map +1 -0
package/dist/chunks/{emit-CD8xnY8s.js → emit-BwHQkZle.js} +1660 -133
package/dist/chunks/emit-BwHQkZle.js.map +1 -0
package/dist/chunks/{escape-DH2Egt-l.js → escape-CuCIzNMB.js} +8 -8
package/dist/chunks/{escape-DH2Egt-l.js.map → escape-CuCIzNMB.js.map} +1 -1
package/dist/chunks/{export-CZ7VRm4I.js → export-Cha4dRFz.js} +45 -387
package/dist/chunks/export-Cha4dRFz.js.map +1 -0
package/dist/chunks/{exporter-Dcw7Ldtq.js → exporter-BP6otMO6.js} +6 -6
package/dist/chunks/{exporter-Dcw7Ldtq.js.map → exporter-BP6otMO6.js.map} +1 -1
package/dist/chunks/{exporter-bxxjOrDZ.js → exporter-D2CETOMK.js} +1222 -156
package/dist/chunks/exporter-D2CETOMK.js.map +1 -0
package/dist/chunks/{exporter-BIdaoIgh.js → exporter-D9yMtocA.js} +7 -7
package/dist/chunks/{exporter-BIdaoIgh.js.map → exporter-D9yMtocA.js.map} +1 -1
package/dist/chunks/{exporter-DtVU80Fa.js → exporter-_jrBTnos.js} +9 -8
package/dist/chunks/{exporter-DtVU80Fa.js.map → exporter-_jrBTnos.js.map} +1 -1
package/dist/chunks/{exporter-ChjL5fmP.js → exporter-nDfxIK5D.js} +9 -8
package/dist/chunks/{exporter-ChjL5fmP.js.map → exporter-nDfxIK5D.js.map} +1 -1
package/dist/chunks/format-BXiAb-1h.js +408 -0
package/dist/chunks/format-BXiAb-1h.js.map +1 -0
package/dist/chunks/{generic-CP6YD34u.js → generic-ymWCETAJ.js} +387 -31
package/dist/chunks/generic-ymWCETAJ.js.map +1 -0
package/dist/chunks/{importer-e3huMZbm.js → importer-B92x1xY5.js} +14 -10
package/dist/chunks/importer-B92x1xY5.js.map +1 -0
package/dist/chunks/{importer-B87_fmVx.js → importer-CT9mJ1nn.js} +326 -84
package/dist/chunks/importer-CT9mJ1nn.js.map +1 -0
package/dist/chunks/{importer-CB_zV5_L.js → importer-DaLTjbds.js} +116 -1102
package/dist/chunks/importer-DaLTjbds.js.map +1 -0
package/dist/chunks/{importer-DPZDN40-.js → importer-GREKMdIf.js} +25 -17
package/dist/chunks/importer-GREKMdIf.js.map +1 -0
package/dist/chunks/{importer-Bji2MeWr.js → importer-PqaaKKnY.js} +13 -10
package/dist/chunks/{importer-Bji2MeWr.js.map → importer-PqaaKKnY.js.map} +1 -1
package/dist/chunks/{importer-Cyy6UseH.js → importer-Vn5QvmmJ.js} +66 -13
package/dist/chunks/importer-Vn5QvmmJ.js.map +1 -0
package/dist/chunks/{importer-CVT-JyDE.js → importer-vRq4h3j5.js} +1469 -356
package/dist/chunks/importer-vRq4h3j5.js.map +1 -0
package/dist/chunks/{input-Ccg9I22A.js → input-CAxt_aV-.js} +4 -4
package/dist/chunks/{input-Ccg9I22A.js.map → input-CAxt_aV-.js.map} +1 -1
package/dist/chunks/{json-elements-By172SVq.js → json-elements-Cq76WjnZ.js} +4 -4
package/dist/chunks/{json-elements-By172SVq.js.map → json-elements-Cq76WjnZ.js.map} +1 -1
package/dist/chunks/{lexicon-u2SI5xcx.js → lexicon-Clf4QIyl.js} +282 -74
package/dist/chunks/lexicon-Clf4QIyl.js.map +1 -0
package/dist/chunks/{ontology-export-BwgMyuF0.js → ontology-export-OMo91mb0.js} +4 -4
package/dist/chunks/{ontology-export-BwgMyuF0.js.map → ontology-export-OMo91mb0.js.map} +1 -1
package/dist/chunks/{records-Cgvxz-Vx.js → records-NJiYvekn.js} +2 -2
package/dist/chunks/{records-Cgvxz-Vx.js.map → records-NJiYvekn.js.map} +1 -1
package/dist/chunks/{report-CgdsL9Hb.js → report-CwMfYa9J.js} +23 -23
package/dist/chunks/{report-CgdsL9Hb.js.map → report-CwMfYa9J.js.map} +1 -1
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package/dist/chunks/sigv4-EokFic1V.js.map +1 -0
package/dist/chunks/{styles-CaABMoO1.js → styles-CCs214_3.js} +1237 -138
package/dist/chunks/styles-CCs214_3.js.map +1 -0
package/dist/chunks/styles-Cm62yyQX.js +2812 -0
package/dist/chunks/styles-Cm62yyQX.js.map +1 -0
package/dist/chunks/styles-DPQQIig4.js +1928 -0
package/dist/chunks/styles-DPQQIig4.js.map +1 -0
package/dist/chunks/{styles-yed-Cs1nmrjn.js → styles-yed-UMFdNqze.js} +503 -172
package/dist/chunks/styles-yed-UMFdNqze.js.map +1 -0
package/dist/chunks/{text-BuKQVMz2.js → text-ystE2bYi.js} +2 -2
package/dist/chunks/{text-BuKQVMz2.js.map → text-ystE2bYi.js.map} +1 -1
package/dist/csv.js +7 -7
package/dist/cx.js +2 -2
package/dist/cx2.js +2 -2
package/dist/cys.js +1 -1
package/dist/dot.js +5 -4
package/dist/dot.js.map +1 -1
package/dist/gexf.js +42 -12
package/dist/gexf.js.map +1 -1
package/dist/gml.js +847 -193
package/dist/gml.js.map +1 -1
package/dist/graph-io.js +232 -220
package/dist/graph-io.js.map +1 -1
package/dist/graphml.js +3 -3
package/dist/json.js +3 -2
package/dist/neo4j.js +6 -6
package/dist/obo.js +1 -1
package/dist/pajek.js +1 -1
package/dist/positions.js +45 -3
package/dist/positions.js.map +1 -1
package/dist/sources-cypher.js +138 -23
package/dist/sources-cypher.js.map +1 -1
package/dist/sources-ndex.js +2 -2
package/dist/sources-rest.js +16 -6
package/dist/sources-rest.js.map +1 -1
package/dist/sources-sparql.d.ts +1 -0
package/dist/sources-sparql.js +405 -0
package/dist/sources-sparql.js.map +1 -0
package/dist/src/formats/cx/importer.d.ts.map +1 -1
package/dist/src/formats/cx/importer.js +5 -1
package/dist/src/formats/cx/importer.js.map +1 -1
package/dist/src/formats/cx/styles.d.ts +24 -1
package/dist/src/formats/cx/styles.d.ts.map +1 -1
package/dist/src/formats/cx/styles.js +117 -11
package/dist/src/formats/cx/styles.js.map +1 -1
package/dist/src/formats/cx2/importer.d.ts.map +1 -1
package/dist/src/formats/cx2/importer.js +1 -0
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package/dist/src/formats/cx2/styles.d.ts.map +1 -1
package/dist/src/formats/cx2/styles.js +3 -1
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package/dist/src/formats/cys/styles.d.ts +2 -0
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package/dist/src/formats/cys/styles.js +15 -7
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package/dist/src/formats/dot/drawing.js +734 -0
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package/dist/src/formats/dot/importer.js +108 -31
package/dist/src/formats/dot/importer.js.map +1 -1
package/dist/src/formats/dot/label-places.d.ts +34 -0
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package/dist/src/formats/dot/label-places.js +179 -0
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package/dist/src/formats/dot/record.d.ts +50 -0
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package/dist/src/formats/dot/record.js.map +1 -0
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package/dist/src/styles/cytoscape/mappings.d.ts CHANGED Viewed

@@ -3,6 +3,7 @@
  * dependencies, read from CX version 1 (`cyVisualProperties`, mapping definitions as `COL=...,K=0=a` strings) and CX2
  * (`visualProperties`, `visualEditorProperties`). Every table keyed by file text is a `Map`.
  */
+import type { GraphSnapshot } from "@graphty/graph-format";
 import type { StyleNotes } from "../notes.js";
 import type { StyleTarget } from "../types.js";
 /**
@@ -91,6 +92,35 @@ export interface CytoscapeStyle {
  * @category Styles
  */
 export declare function emptyCytoscapeStyle(): CytoscapeStyle;
+/**
+ * Points every mapping over `shared name` or `shared interaction` at `name` or `interaction` when the file holds only
+ * the plain column: Cytoscape fills the shared column from it on import, so the mapping reads the same values.
+ * @param style - the target's style, changed in place
+ * @param has - whether the file holds a column
+ * @category Styles
+ */
+export declare function sharedColumnFallback(style: CytoscapeTargetStyle, has: (column: string) => boolean): void;
+/**
+ * Points every mapping over the attribute an import read as the edge weight at the column it is kept in
+ * (`graphty.weight`, which `snapshot.edges.byRole("weight")` finds): the importer takes that attribute out of the
+ * plain columns, while Cytoscape keeps it as an ordinary column its mappings read.
+ * @param style - the edge style, changed in place
+ * @param weightFrom - the attribute read as the weight, or null when none was
+ * @param table - the edge table
+ * @category Styles
+ */
+export declare function weightColumnFallback(style: CytoscapeTargetStyle, weightFrom: string | null, table: GraphSnapshot["edges"]): void;
+/**
+ * Empties every discrete mapping whose keys are typed integral (`integer`, `long`) over a floating (`double`)
+ * column, or the other way round. Cytoscape compares a Java Integer key with a Double value, which never match, so
+ * the mapping sets nothing and the default shows (`4.0` does not match key `4`). Noted as `W_STYLE_BAD_MAPPING`.
+ * @param style - the target's style, changed in place
+ * @param typeOf - a column's declared type, or null when unknown
+ * @param notes - where problems are noted
+ * @param target - nodes or edges, for notes
+ * @category Styles
+ */
+export declare function dropMismatchedKeys(style: CytoscapeTargetStyle, typeOf: (column: string) => string | null, notes: StyleNotes, target: StyleTarget): void;
 /**
  * A discrete key typed by its attribute's type: a number for a numeric type, a boolean for `boolean`, else the key
  * as the file gives it. A list type (`list_of_integer`) types its items.

package/dist/src/styles/cytoscape/mappings.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/src/styles/cytoscape/mappings.js CHANGED Viewed

@@ -18,6 +18,89 @@ export function emptyCytoscapeStyle() {
     });
     return { network: { defaults: new Map() }, node: target(), edge: target() };
 }
+/** Cytoscape's network-collection columns and the plain columns it fills them from when a file holds only those. */
+const SHARED_COLUMNS = new Map([
+    ["shared name", "name"],
+    ["shared interaction", "interaction"],
+]);
+/**
+ * Points every mapping over `shared name` or `shared interaction` at `name` or `interaction` when the file holds only
+ * the plain column: Cytoscape fills the shared column from it on import, so the mapping reads the same values.
+ * @param style - the target's style, changed in place
+ * @param has - whether the file holds a column
+ * @category Styles
+ */
+export function sharedColumnFallback(style, has) {
+    for (const [vp, m] of style.mappings) {
+        const plain = SHARED_COLUMNS.get(m.column);
+        if (plain !== undefined && !has(m.column) && has(plain)) {
+            style.mappings.set(vp, { ...m, column: plain });
+        }
+    }
+}
+/**
+ * Points every mapping over the attribute an import read as the edge weight at the column it is kept in
+ * (`graphty.weight`, which `snapshot.edges.byRole("weight")` finds): the importer takes that attribute out of the
+ * plain columns, while Cytoscape keeps it as an ordinary column its mappings read.
+ * @param style - the edge style, changed in place
+ * @param weightFrom - the attribute read as the weight, or null when none was
+ * @param table - the edge table
+ * @category Styles
+ */
+export function weightColumnFallback(style, weightFrom, table) {
+    const kept = weightFrom === null || table.has(weightFrom) ? undefined : table.byRole("weight")?.meta.name;
+    if (kept === undefined) {
+        return;
+    }
+    for (const [vp, m] of style.mappings) {
+        if (m.column === weightFrom) {
+            style.mappings.set(vp, { ...m, column: kept });
+        }
+    }
+}
+/**
+ * Whether a numeric type name is integral (`integer`, `long`), floating (`double`, `real`) or neither.
+ * @param type - the type name as a file gives it
+ * @returns the family, or null
+ */
+function numericFamily(type) {
+    const t = (type ?? "")
+        .toLowerCase()
+        .replace(/^list_of_/, "")
+        .replace(/^java\.lang\./, "");
+    if (t === "integer" || t === "long" || t === "int" || t === "short") {
+        return "integral";
+    }
+    if (t === "double" || t === "float" || t === "real") {
+        return "floating";
+    }
+    return null;
+}
+/**
+ * Empties every discrete mapping whose keys are typed integral (`integer`, `long`) over a floating (`double`)
+ * column, or the other way round. Cytoscape compares a Java Integer key with a Double value, which never match, so
+ * the mapping sets nothing and the default shows (`4.0` does not match key `4`). Noted as `W_STYLE_BAD_MAPPING`.
+ * @param style - the target's style, changed in place
+ * @param typeOf - a column's declared type, or null when unknown
+ * @param notes - where problems are noted
+ * @param target - nodes or edges, for notes
+ * @category Styles
+ */
+export function dropMismatchedKeys(style, typeOf, notes, target) {
+    for (const [vp, m] of style.mappings) {
+        if (m.kind !== "discrete" || m.table.length === 0) {
+            continue;
+        }
+        const key = numericFamily(m.type);
+        const column = numericFamily(typeOf(m.column));
+        if (key !== null && column !== null && key !== column) {
+            style.mappings.set(vp, { ...m, table: [] });
+            notes.add(STYLE_ISSUE.BAD_MAPPING, target, m.column, {
+                sample: `${vp}: ${key} keys on a ${column} column`,
+            });
+        }
+    }
+}
 const NUMERIC_TYPES = new Set(["integer", "long", "double", "float", "int", "short"]);
 const DECIMAL = /^[+-]?(?:\d+(?:\.\d*)?|\.\d+)(?:[eE][+-]?\d+)?$/;
 /**
@@ -419,6 +502,8 @@ export function cytoscapeStyleFromCx2(visualProperties, visualEditorProperties,
     }
     style.node.dependencies.set("nodeSizeLocked", own(editor, "nodeSizeLocked") === true);
     style.edge.dependencies.set("arrowColorMatchesEdge", own(editor, "arrowColorMatchesEdge") === true);
+    // charts are fitted to their node unless the editor says otherwise
+    style.node.dependencies.set("nodeCustomGraphicsSizeSync", own(editor, "nodeCustomGraphicsSizeSync") !== false);
     for (const [target, key] of [
         ["node", "nodeMapping"],
         ["edge", "edgeMapping"],
@@ -435,6 +520,13 @@ export function cytoscapeStyleFromCx2(visualProperties, visualEditorProperties,
         }
     }
     lockedSizeFromWidth(style.node);
+    // CX2 names an edge's bend handles EDGE_CONTROL_POINTS
+    for (const part of [style.edge.defaults, style.edge.mappings]) {
+        if (part.has("EDGE_CONTROL_POINTS") && !part.has("EDGE_BEND")) {
+            part.set("EDGE_BEND", part.get("EDGE_CONTROL_POINTS"));
+        }
+    }
+    style.edge.bypassAliases.set("EDGE_CONTROL_POINTS", "EDGE_BEND");
     return style;
 }
 /**

package/dist/src/styles/cytoscape/mappings.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/src/styles/cytoscape/resolve.d.ts CHANGED Viewed

@@ -4,7 +4,8 @@
  * `arrowColorMatchesEdge` makes the edge's paint drive the line and both arrows). Every pass is linear in the number
  * of elements plus the size of the style, and spends from the extraction's one budget.
  */
-import type { CanonSite } from "../canon/site.js";
+import type { GraphSnapshot } from "@graphty/graph-format";
+import { type CanonSite } from "../canon/site.js";
 import { StyleNotes } from "../notes.js";
 import type { ContinuousPoint, Scalar, StyleColor, StyleColumn, StyleTarget, StyleTool, StyleValue, StyleWorkBudget } from "../types.js";
 import { type CytoscapeValueParser } from "./lexicon.js";
@@ -30,6 +31,30 @@ export interface CytoscapeElements {
     value(column: string, i: number): unknown;
     /** Each element's bypasses, by element index. */
     readonly bypasses?: readonly CytoscapeBypass[];
+    /**
+     * Edges only: each edge's source and target node index, in the order Cytoscape created the edges. With them,
+     * the edges Cytoscape desktop fans apart (parallel edges without bends) are marked curved; with `nodeSize` too
+     * (each node's larger drawn side, by node index, as `fanNodeSizes()` reads it), they are given the `fanSpacing`
+     * desktop spaces them by. With `nodeBox` (each node's width, height and border width, by node index), each
+     * self-loop without bends is given the two handles desktop draws it round.
+     */
+    readonly ends?: {
+        readonly source: ArrayLike<number>;
+        readonly target: ArrayLike<number>;
+        readonly nodeSize?: ArrayLike<number | null>;
+        readonly nodeBox?: ArrayLike<readonly [width: number, height: number, border: number] | null>;
+        /** Each node's center on screen, x right and y down, by node index: what an edge's label is placed by. */
+        readonly nodeAt?: ArrayLike<readonly [x: number, y: number] | null>;
+        /**
+         * The order Cytoscape desktop creates the file's nodes and edges in, when it is not the file's (its CX reader
+         * creates them in hash order): each element's rank, lower first, by index. With it, `nodeAt` and `nodeSize`,
+         * each fanned edge is given desktop's own anchor as its bend, so it bows to the side desktop draws it on.
+         */
+        readonly created?: {
+            readonly node: ArrayLike<number>;
+            readonly edge: ArrayLike<number>;
+        };
+    };
 }
 /**
  * Options of `resolveCytoscape()`.
@@ -46,7 +71,22 @@ export interface CytoscapeResolveOptions {
      * element the style says nothing about is null. Defaults to null.
      */
     readonly defaults?: StyleTool | null;
+    /** `resolveCytoscapeBypasses()` only: the edges' ends, as `CytoscapeElements.ends`. */
+    readonly ends?: CytoscapeElements["ends"];
+    /**
+     * `resolveCytoscapeBypasses()` only: an element's value of an attribute column, as `CytoscapeElements.value`,
+     * for what is drawn from the element's data (a chart's values); without it no element has any.
+     */
+    readonly value?: CytoscapeElements["value"];
 }
+/**
+ * A graph's edge ends for `CytoscapeElements.ends`, with each node's larger side from the nodes' resolved `width`
+ * and `height`: what desktop spaces the edges it fans between two nodes by.
+ * @param snapshot - the graph
+ * @param nodes - the nodes' values per property
+ * @returns the ends
+ */
+export declare function edgeEnds(snapshot: GraphSnapshot, nodes: Partial<Record<string, StyleColumn>>): NonNullable<CytoscapeElements["ends"]>;
 /** A visual property and the parser that reads it for one neutral property. */
 type VpChoice = readonly [vp: string, parse: CytoscapeValueParser];
 /**
@@ -99,7 +139,7 @@ export declare function parseMapping(m: CytoscapeMapping, parse: CytoscapeValueP
 /**
  * Every element's value per neutral property under a Cytoscape style, the way Cytoscape draws it: per visual
  * property a bypass, else the mapping's value, else the default; `nodeSizeLocked` and `arrowColorMatchesEdge`
- * applied. `EDGE_CURVED` only rounds an edge's bends, so an edge without bends is `curved: false`. Visual properties
+ * applied (under `nodeSizeLocked` a node's own `NODE_WIDTH` or `NODE_HEIGHT` bypass still sets that dimension). `EDGE_CURVED` only rounds an edge's bends, so an edge without bends is `curved: false` unless desktop fans it out of a bundle of parallel edges (given `elements.ends`). Visual properties
  * no neutral property carries are noted as `W_STYLE_NOT_CARRIED`.
  * @param target - nodes or edges
  * @param style - the style

package/dist/src/styles/cytoscape/resolve.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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