@graphty/graph-io 0.3.19 → 0.3.21

package/dist/src/formats/xgmml/values.js

@@ -0,0 +1,148 @@
+/**
+ * XGMML attribute types and values (`research-xgmml.md` sections 3.6, 3.8 and 4.3): which kind an
+ * `<att>` declares (Cytoscape's `cy:type` before the draft's `type`, case-insensitively), and the
+ * lexical rules of each kind as Cytoscape writes them. A value that does not parse is never
+ * guessed at: the caller records E_BAD_VALUE and leaves the cell unset.
+ */
+/** Cytoscape's `cy:type` names (3.3+), lower-cased. */
+const CY_TYPES = {
+    string: "string",
+    double: "real",
+    integer: "int",
+    long: "long",
+    boolean: "bool",
+    list: "list",
+};
+/** The XGMML draft's types, Cytoscape's `boolean` and the 2.x `map`, lower-cased. */
+const XGMML_TYPES = {
+    string: "string",
+    real: "real",
+    integer: "int",
+    boolean: "bool",
+    list: "list",
+    map: "map",
+};
+/**
+ * The kind an att declares: `cy:type` first, then `type`, both case-insensitive; no type is a
+ * string; an unknown type is a string the caller reports. An untyped-by-Cytoscape `integer` att
+ * whose name ends in `.SUID` is a long (Cytoscape keeps SUID references as Long).
+ * @param att - the att
+ * @returns the declared kind
+ */
+export function attType(att) {
+    let kind;
+    let declared = null;
+    if (att.cyType !== null && att.cyType.length > 0) {
+        kind = CY_TYPES[att.cyType.trim().toLowerCase()];
+        declared = att.cyType;
+    }
+    if (kind === undefined && att.type !== null && att.type.length > 0) {
+        kind = XGMML_TYPES[att.type.trim().toLowerCase()];
+        declared = att.type;
+    }
+    if (kind === undefined) {
+        const unknown = declared ?? null;
+        return { kind: "string", declared, unknown };
+    }
+    if (kind === "int" && att.cyType === null && att.name?.endsWith(".SUID") === true) {
+        // pre-3.3 Cytoscape wrote its Long SUID references as "integer"; a real one stays real
+        // (Cytoscape writes Double.toString forms such as "21.0", which no integer rule reads)
+        kind = "long";
+    }
+    return { kind, declared, unknown: null };
+}
+/**
+ * The scalar kind a list element type names (`cy:elementType`), or null when it names none.
+ * @param text - the element type text
+ * @returns the kind, or null
+ */
+export function elementKind(text) {
+    if (text === null) {
+        return null;
+    }
+    const kind = CY_TYPES[text.trim().toLowerCase()] ?? XGMML_TYPES[text.trim().toLowerCase()];
+    return kind === undefined || kind === "list" || kind === "map" ? null : kind;
+}
+/**
+ * The wider of two scalar kinds (design section 5.1): int and long widen to long, any two numbers
+ * to real, a boolean and a number to string, anything and a string to string.
+ * @param a - one kind
+ * @param b - the other
+ * @returns the kind both fit
+ */
+export function widenScalar(a, b) {
+    if (a === b) {
+        return a;
+    }
+    if (a === "string" || b === "string" || a === "bool" || b === "bool") {
+        return "string";
+    }
+    if (a === "real" || b === "real") {
+        return "real";
+    }
+    return "long";
+}
+const INTEGER_TEXT = /^[+-]?[0-9]+$/;
+/** Java's Double.valueOf forms that Cytoscape writes: no hex, no `d` / `f` suffix. */
+const REAL_TEXT = /^[+-]?(NaN|Infinity|([0-9]+\.?[0-9]*|\.[0-9]+)([eE][+-]?[0-9]+)?)$/;
+const I32_MIN = -2147483648;
+const I32_MAX = 2147483647;
+/**
+ * Parse one value text by its declared scalar kind. Numbers and booleans are trimmed; strings
+ * never are. Booleans accept 1 / 0 / true / false / yes / no in any case.
+ * @param text - the value text
+ * @param kind - the declared kind
+ * @param unescape - decode Cytoscape's two-character `\n` and `\t` in strings
+ * @returns the value, or null when the text does not parse as the kind
+ */
+export function parseScalar(text, kind, unescape) {
+    switch (kind) {
+        case "string":
+            return { value: unescape ? unescapeCytoscape(text) : text };
+        case "bool": {
+            const t = text.trim().toLowerCase();
+            if (t === "1" || t === "true" || t === "yes") {
+                return { value: true };
+            }
+            if (t === "0" || t === "false" || t === "no") {
+                return { value: false };
+            }
+            return null;
+        }
+        case "int":
+        case "long": {
+            const t = text.trim();
+            if (!INTEGER_TEXT.test(t)) {
+                return null;
+            }
+            const n = Number(t);
+            if (kind === "int" && (n < I32_MIN || n > I32_MAX)) {
+                return { value: n, overflow: Number.isSafeInteger(n) ? "i32" : "precision" };
+            }
+            return { value: n, overflow: Number.isSafeInteger(n) ? undefined : "precision" };
+        }
+        case "real": {
+            const t = text.trim();
+            if (!REAL_TEXT.test(t)) {
+                return null;
+            }
+            const n = Number(t);
+            // only a finite spelling that overflows (1e400) loses precision; NaN and the infinities are exact
+            const overflow = !Number.isFinite(n) && !/Infinity|NaN/.test(t) ? "precision" : undefined;
+            return { value: n, overflow };
+        }
+        default: {
+            const name = kind;
+            throw new Error(`unknown scalar kind ${String(name)}`);
+        }
+    }
+}
+/**
+ * Decode the two-character escapes the Cytoscape writer uses for newline and tab.
+ * @param text - the text
+ * @returns the text with `\n` and `\t` decoded
+ */
+function unescapeCytoscape(text) {
+    return text.includes("\\") ? text.replace(/\\t/g, "\t").replace(/\\n/g, "\n") : text;
+}
+//# sourceMappingURL=values.js.map

package/dist/src/formats/xgmml/values.js.map

@@ -0,0 +1 @@
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package/dist/src/index.d.ts

@@ -14,6 +14,7 @@ export { extensionOf, GRAPH_FORMATS, type GraphFormatName, headBytes, normalizeM
 export { CSV_CAPABILITIES, CSV_ISSUE, CSV_LOSS, type CsvColumnRef, csvExporter, type CsvExportOptions, csvImporter, type CsvImportOptions, } from "./formats/csv/index.js";
 export { CX_ISSUE, cxImporter, type CxImportOptions } from "./formats/cx/index.js";
 export { CX2_CAPABILITIES, CX2_ISSUE, CX2_LOSS, cx2Exporter, type Cx2ExportOptions, cx2Importer, type Cx2ImportOptions, } from "./formats/cx2/index.js";
+export { CYS_ISSUE, cysImporter, type CysImportOptions } from "./formats/cys/index.js";
 export { DOT_ISSUE, DOT_LOSS, dotExporter, type DotExportOptions, dotImporter, type DotImportOptions, } from "./formats/dot/index.js";
 export { GEXF_1_2_CAPABILITIES, GEXF_ISSUE, GEXF_LOSS, gexfExporter, type GexfExportOptions, gexfImporter, type GexfImportOptions, type GexfVersion, } from "./formats/gexf/index.js";
 export { GML_ISSUE, GML_LOSS, gmlExporter, type GmlExportOptions, gmlImporter, type GmlImportOptions, } from "./formats/gml/index.js";
@@ -22,6 +23,7 @@ export { dialectCapabilities, JSON_DIALECTS, JSON_ISSUE, JSON_LOSS, jsonCapabili
 export { ID_SPACE_COLUMN, LABELS_COLUMN, NEO4J_CAPABILITIES, NEO4J_ISSUE, NEO4J_LOSS, neo4jExporter, type Neo4jExportOptions, neo4jImporter, type Neo4jImportOptions, ORIGINAL_ID_COLUMN, TYPE_COLUMN, } from "./formats/neo4j/index.js";
 export { OBO_ISSUE, oboImporter, type OboImportOptions } from "./formats/obo/index.js";
 export { PAJEK_ISSUE, PAJEK_LOSS, pajekExporter, type PajekExportOptions, pajekImporter, type PajekImportOptions, } from "./formats/pajek/index.js";
+export { XGMML_ISSUE, XGMML_LOSS, xgmmlExporter, type XgmmlExportOptions, xgmmlImporter, type XgmmlImportOptions, } from "./formats/xgmml/index.js";
 export { BAD_DEFAULT_CODE, BAD_OPTIONS_CODE, declareCompanion, declareResolved, PRECISION_CODE, RENAMED_CODE, type ResolvedDeclaration, ROLE_TAKEN_CODE, UNKNOWN_TYPE_CODE, } from "./common/attributes.js";
 export * from "./common/codes.js";
 export { DIRECTED_COLUMN, DIRECTION_FORCED_CODE, DIRECTION_REFUSED_CODE, DirectionResolver, type EdgeKind, type EdgeLocation, MIXED_DIRECTION_CODE, MUTUAL_COLUMN, PAIR_COLUMN, type PairFolding, pairFolding, type PairFoldingOptions, } from "./common/direction.js";

package/dist/src/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAGH,OAAO,EACH,KAAK,mBAAmB,EACxB,KAAK,mBAAmB,EACxB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EACvB,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,YAAY,EACjB,WAAW,EACX,KAAK,WAAW,EAChB,KAAK,WAAW,EAChB,KAAK,YAAY,EACjB,KAAK,aAAa,EAClB,KAAK,QAAQ,GAChB,MAAM,YAAY,CAAC;AAGpB,OAAO,EACH,WAAW,EACX,WAAW,EACX,kBAAkB,EAClB,KAAK,eAAe,EACpB,KAAK,eAAe,EACpB,KAAK,eAAe,GACvB,MAAM,eAAe,CAAC;AACvB,OAAO,EACH,KAAK,WAAW,EAChB,WAAW,EACX,cAAc,EACd,WAAW,EACX,KAAK,kBAAkB,EACvB,mBAAmB,EACnB,cAAc,EACd,eAAe,EACf,WAAW,EACX,KAAK,kBAAkB,EACvB,KAAK,iBAAiB,EACtB,UAAU,EACV,QAAQ,EACR,KAAK,EACL,mBAAmB,GACtB,MAAM,eAAe,CAAC;AACvB,OAAO,EACH,WAAW,EACX,aAAa,EACb,KAAK,eAAe,EACpB,SAAS,EACT,iBAAiB,EACjB,WAAW,EACX,gBAAgB,EAChB,WAAW,EACX,KAAK,UAAU,EACf,oBAAoB,EACpB,KAAK,WAAW,GACnB,MAAM,YAAY,CAAC;AAGpB,OAAO,EACH,gBAAgB,EAChB,SAAS,EACT,QAAQ,EACR,KAAK,YAAY,EACjB,WAAW,EACX,KAAK,gBAAgB,EACrB,WAAW,EACX,KAAK,gBAAgB,GACxB,MAAM,wBAAwB,CAAC;AAChC,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,KAAK,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACnF,OAAO,EACH,gBAAgB,EAChB,SAAS,EACT,QAAQ,EACR,WAAW,EACX,KAAK,gBAAgB,EACrB,WAAW,EACX,KAAK,gBAAgB,GACxB,MAAM,wBAAwB,CAAC;AAChC,OAAO,EAAE,SAAS,EAAE,WAAW,EAAE,KAAK,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AACvF,OAAO,EACH,SAAS,EACT,QAAQ,EACR,WAAW,EACX,KAAK,gBAAgB,EACrB,WAAW,EACX,KAAK,gBAAgB,GACxB,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,qBAAqB,EACrB,UAAU,EACV,SAAS,EACT,YAAY,EACZ,KAAK,iBAAiB,EACtB,YAAY,EACZ,KAAK,iBAAiB,EACtB,KAAK,WAAW,GACnB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EACH,SAAS,EACT,QAAQ,EACR,WAAW,EACX,KAAK,gBAAgB,EACrB,WAAW,EACX,KAAK,gBAAgB,GACxB,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,aAAa,EACb,YAAY,EACZ,eAAe,EACf,KAAK,oBAAoB,EACzB,eAAe,EACf,KAAK,oBAAoB,GAC5B,MAAM,4BAA4B,CAAC;AACpC,OAAO,EACH,mBAAmB,EACnB,aAAa,EACb,UAAU,EACV,SAAS,EACT,gBAAgB,EAChB,KAAK,WAAW,EAChB,YAAY,EACZ,KAAK,iBAAiB,EACtB,KAAK,iBAAiB,EACtB,YAAY,EACZ,KAAK,iBAAiB,EACtB,KAAK,aAAa,GACrB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EACH,eAAe,EACf,aAAa,EACb,kBAAkB,EAClB,WAAW,EACX,UAAU,EACV,aAAa,EACb,KAAK,kBAAkB,EACvB,aAAa,EACb,KAAK,kBAAkB,EACvB,kBAAkB,EAClB,WAAW,GACd,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,SAAS,EAAE,WAAW,EAAE,KAAK,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AACvF,OAAO,EACH,WAAW,EACX,UAAU,EACV,aAAa,EACb,KAAK,kBAAkB,EACvB,aAAa,EACb,KAAK,kBAAkB,GAC1B,MAAM,0BAA0B,CAAC;AAClC,OAAO,EACH,WAAW,EACX,UAAU,EACV,aAAa,EACb,KAAK,kBAAkB,EACvB,aAAa,EACb,KAAK,kBAAkB,GAC1B,MAAM,0BAA0B,CAAC;AAGlC,OAAO,EACH,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,YAAY,EACZ,KAAK,mBAAmB,EACxB,eAAe,EACf,iBAAiB,GACpB,MAAM,wBAAwB,CAAC;AAChC,cAAc,mBAAmB,CAAC;AAClC,OAAO,EACH,eAAe,EACf,qBAAqB,EACrB,sBAAsB,EACtB,iBAAiB,EACjB,KAAK,QAAQ,EACb,KAAK,YAAY,EACjB,oBAAoB,EACpB,aAAa,EACb,WAAW,EACX,KAAK,WAAW,EAChB,WAAW,EACX,KAAK,kBAAkB,GAC1B,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACH,YAAY,EACZ,iBAAiB,EACjB,KAAK,WAAW,EAChB,KAAK,SAAS,EACd,SAAS,EACT,IAAI,EACJ,aAAa,EACb,eAAe,EACf,KAAK,YAAY,EACjB,WAAW,GACd,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,SAAS,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AACvG,OAAO,EACH,WAAW,EACX,QAAQ,EACR,YAAY,EACZ,cAAc,EACd,SAAS,EACT,sBAAsB,GACzB,MAAM,iBAAiB,CAAC;AACzB,OAAO,EACH,eAAe,EACf,WAAW,EACX,iBAAiB,EACjB,aAAa,EACb,UAAU,EACV,KAAK,WAAW,EAChB,QAAQ,EACR,UAAU,EACV,cAAc,GACjB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACH,WAAW,EACX,mBAAmB,EACnB,KAAK,oBAAoB,EACzB,iBAAiB,EACjB,mBAAmB,EACnB,KAAK,qBAAqB,EAC1B,KAAK,qBAAqB,EAC1B,oBAAoB,EACpB,oBAAoB,EACpB,gBAAgB,GACnB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EACH,mBAAmB,EACnB,YAAY,EACZ,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,gBAAgB,GACnB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACH,cAAc,EACd,aAAa,EACb,aAAa,EACb,cAAc,EACd,KAAK,SAAS,EACd,yBAAyB,GAC5B,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,KAAK,eAAe,EAAE,eAAe,EAAE,aAAa,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAC5G,OAAO,EACH,YAAY,EACZ,YAAY,EACZ,mBAAmB,EACnB,YAAY,EACZ,QAAQ,EACR,KAAK,SAAS,EACd,gBAAgB,GACnB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACH,iBAAiB,EACjB,WAAW,EACX,KAAK,UAAU,EACf,mBAAmB,EACnB,cAAc,EACd,YAAY,GACf,MAAM,iBAAiB,CAAC"}

package/dist/src/index.js

@@ -17,6 +17,7 @@ export { extensionOf, GRAPH_FORMATS, headBytes, normalizeMimeType, rankFormats,
 export { CSV_CAPABILITIES, CSV_ISSUE, CSV_LOSS, csvExporter, csvImporter, } from "./formats/csv/index.js";
 export { CX_ISSUE, cxImporter } from "./formats/cx/index.js";
 export { CX2_CAPABILITIES, CX2_ISSUE, CX2_LOSS, cx2Exporter, cx2Importer, } from "./formats/cx2/index.js";
+export { CYS_ISSUE, cysImporter } from "./formats/cys/index.js";
 export { DOT_ISSUE, DOT_LOSS, dotExporter, dotImporter, } from "./formats/dot/index.js";
 export { GEXF_1_2_CAPABILITIES, GEXF_ISSUE, GEXF_LOSS, gexfExporter, gexfImporter, } from "./formats/gexf/index.js";
 export { GML_ISSUE, GML_LOSS, gmlExporter, gmlImporter, } from "./formats/gml/index.js";
@@ -25,6 +26,7 @@ export { dialectCapabilities, JSON_DIALECTS, JSON_ISSUE, JSON_LOSS, jsonCapabili
 export { ID_SPACE_COLUMN, LABELS_COLUMN, NEO4J_CAPABILITIES, NEO4J_ISSUE, NEO4J_LOSS, neo4jExporter, neo4jImporter, ORIGINAL_ID_COLUMN, TYPE_COLUMN, } from "./formats/neo4j/index.js";
 export { OBO_ISSUE, oboImporter } from "./formats/obo/index.js";
 export { PAJEK_ISSUE, PAJEK_LOSS, pajekExporter, pajekImporter, } from "./formats/pajek/index.js";
+export { XGMML_ISSUE, XGMML_LOSS, xgmmlExporter, xgmmlImporter, } from "./formats/xgmml/index.js";
 // ============================================================ shared helpers for plugin authors (8.4, 8.5, 8.6)
 export { BAD_DEFAULT_CODE, BAD_OPTIONS_CODE, declareCompanion, declareResolved, PRECISION_CODE, RENAMED_CODE, ROLE_TAKEN_CODE, UNKNOWN_TYPE_CODE, } from "./common/attributes.js";
 export * from "./common/codes.js";

package/dist/src/index.js.map

@@ -1 +1 @@
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package/dist/src/registry.d.ts

@@ -31,6 +31,13 @@ export interface ImportGraphOptions extends CommonImportOptions, GraphChoiceOpti
     readonly builder?: BuilderSeed | undefined;
     /** Options of the freeze that follows the import. */
     readonly freeze?: FreezeOptions | undefined;
+    /**
+     * The most attribute slots that hold no value the import may allocate before it stops with
+     * E_TOO_MANY_EMPTY_CELLS. Every attribute is a column with one slot per node (or edge), so a file
+     * whose nodes each have a differently named attribute would otherwise need nodes x attributes
+     * memory. Default 2^24 (16,777,216); Infinity turns the check off. Dense files are never stopped.
+     */
+    readonly maxEmptyCells?: number | undefined;
     /** Format-specific options, passed to the importer as they are. */
     readonly [formatOption: string]: unknown;
 }

package/dist/src/registry.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"registry.d.ts","sourceRoot":"","sources":["../../src/registry.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EACH,KAAK,aAAa,EAClB,KAAK,YAAY,EAEjB,KAAK,mBAAmB,EAExB,KAAK,aAAa,EACrB,MAAM,uBAAuB,CAAC;AAkB/B,OAAO,EAAiC,KAAK,UAAU,EAAE,KAAK,WAAW,EAAE,MAAM,YAAY,CAAC;AAC9F,OAAO,EACH,KAAK,mBAAmB,EACxB,KAAK,mBAAmB,EACxB,KAAK,kBAAkB,EACvB,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,YAAY,EACjB,KAAK,WAAW,EAChB,KAAK,YAAY,EACjB,KAAK,QAAQ,EAChB,MAAM,YAAY,CAAC;AAEpB,iFAAiF;AACjF,eAAO,MAAM,mBAAmB,qBAAqB,CAAC;AAEtD,gGAAgG;AAChG,MAAM,MAAM,WAAW,GAAG,IAAI,CAC1B,mBAAmB,EACnB,UAAU,GAAG,iBAAiB,GAAG,gBAAgB,GAAG,WAAW,GAAG,aAAa,CAClF,CAAC;AAEF;;;;;;GAMG;AACH,MAAM,WAAW,kBAAmB,SAAQ,mBAAmB,EAAE,kBAAkB;IAC/E,iGAAiG;IACjG,QAAQ,CAAC,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,sEAAsE;IACtE,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;IAC9C,kEAAkE;IAClE,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;IAC9C,0FAA0F;IAC1F,QAAQ,CAAC,OAAO,CAAC,EAAE,WAAW,GAAG,SAAS,CAAC;IAC3C,qDAAqD;IACrD,QAAQ,CAAC,MAAM,CAAC,EAAE,aAAa,GAAG,SAAS,CAAC;IAC5C;;;;;OAKG;IACH,QAAQ,CAAC,aAAa,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC5C,mEAAmE;IACnE,QAAQ,EAAE,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC;CAC5C;AAED,uDAAuD;AACvD,MAAM,WAAW,iBAAiB;IAC9B,wCAAwC;IACxC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IACxB,mFAAmF;IACnF,QAAQ,CAAC,KAAK,EAAE,WAAW,GAAG,IAAI,CAAC;IACnC,2BAA2B;IAC3B,QAAQ,CAAC,QAAQ,EAAE,aAAa,CAAC;IACjC,6BAA6B;IAC7B,QAAQ,CAAC,MAAM,EAAE,YAAY,CAAC;IAC9B,8CAA8C;IAC9C,QAAQ,CAAC,MAAM,EAAE,YAAY,CAAC;CACjC;AAED,+GAA+G;AAC/G,MAAM,WAAW,kBAAmB,SAAQ,mBAAmB;IAC3D,mEAAmE;IACnE,QAAQ,EAAE,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC;CAC5C;AAYD;;;;GAIG;AACH,qBAAa,cAAc;IACvB,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAoC;IAEhE,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAoC;IAEhE;;;;;OAKG;IACH,gBAAgB,CAAC,QAAQ,EAAE,aAAa,GAAG,IAAI;IAK/C;;;;OAIG;IACH,gBAAgB,CAAC,QAAQ,EAAE,aAAa,GAAG,IAAI;IAK/C;;;;OAIG;IACH,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,aAAa;IAQvC;;;;OAIG;IACH,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,aAAa;IAQvC;;;;OAIG;IACH,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO;IAIpC;;;;OAIG;IACH,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO;IAIpC;;;OAGG;IACH,SAAS,IAAI,SAAS,aAAa,EAAE;IAIrC;;;OAGG;IACH,SAAS,IAAI,SAAS,aAAa,EAAE;IAIrC;;;OAGG;IACH,OAAO,IAAI,SAAS,MAAM,EAAE;IAI5B;;;;;OAKG;IACH,QAAQ,CAAC,KAAK,EAAE,UAAU,GAAG,SAAS,WAAW,EAAE;IAInD;;;;OAIG;IACH,KAAK,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,GAAG,IAAI;IAK5C;;;;;;;;;;OAUG;IACG,WAAW,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,iBAAiB,CAAC;IAanG;;;;;;;;OAQG;IACG,eAAe,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,iBAAiB,EAAE,CAAC;IA2BzG;;;;;;;;OAQG;IACG,UAAU,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,SAAS,YAAY,EAAE,GAAG,IAAI,CAAC;IAW/G;;;;;OAKG;YACW,MAAM;IAmBpB;;;;;;OAMG;IACH,WAAW,CAAC,QAAQ,EAAE,aAAa,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,aAAa,CAAC,UAAU,CAAC;IAI7G;;;;;;OAMG;IACG,mBAAmB,CAAC,QAAQ,EAAE,aAAa,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,OAAO,CAAC,MAAM,CAAC;IAIjH;;;;;;OAMG;IACH,WAAW,CAAC,QAAQ,EAAE,aAAa,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,SAAS,QAAQ,EAAE;CAG1G;AAED;;;GAGG;AACH,wBAAgB,cAAc,IAAI,cAAc,CAyB/C;AAED,mDAAmD;AACnD,eAAO,MAAM,QAAQ,EAAE,cAAiC,CAAC;AAEzD;;;;;;GAMG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAExG;AAED;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,OAAO,CAAC,iBAAiB,EAAE,CAAC,CAE9G;AAED;;;;;GAKG;AACH,wBAAgB,UAAU,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,OAAO,CAAC,SAAS,YAAY,EAAE,GAAG,IAAI,CAAC,CAEpH;AAED;;;;;;GAMG;AACH,wBAAgB,WAAW,CACvB,QAAQ,EAAE,aAAa,EACvB,MAAM,EAAE,MAAM,EACd,OAAO,CAAC,EAAE,kBAAkB,GAC7B,aAAa,CAAC,UAAU,CAAC,CAE3B;AAED;;;;;;GAMG;AACH,wBAAsB,mBAAmB,CACrC,QAAQ,EAAE,aAAa,EACvB,MAAM,EAAE,MAAM,EACd,OAAO,CAAC,EAAE,kBAAkB,GAC7B,OAAO,CAAC,MAAM,CAAC,CAEjB;AAED;;;;;;GAMG;AACH,wBAAgB,WAAW,CACvB,QAAQ,EAAE,aAAa,EACvB,MAAM,EAAE,MAAM,EACd,OAAO,CAAC,EAAE,kBAAkB,GAC7B,SAAS,QAAQ,EAAE,CAErB;AAED;;;;GAIG;AACH,wBAAgB,KAAK,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,GAAG,IAAI,CAE3D"}

package/dist/src/registry.js

@@ -6,12 +6,14 @@
  * `exportGraph()` looks the exporter up by name. A caller who owns a builder uses the importer
  * objects directly (the subpath exports) and this module never touches their sink.
  */
-import { GraphBuilder, GraphFormatError, } from "@graphty/graph-format";
+import { GraphFormatError, } from "@graphty/graph-format";
+import { CellBudgetBuilder, maxEmptyCellsOption } from "./common/cell-budget.js";
 import { throwIfAborted } from "./common/input.js";
 import { ImportReportBuilder } from "./common/report.js";
 import { csvExporter, csvImporter } from "./formats/csv/index.js";
 import { cxImporter } from "./formats/cx/index.js";
 import { cx2Exporter, cx2Importer } from "./formats/cx2/index.js";
+import { cysImporter } from "./formats/cys/index.js";
 import { dotExporter, dotImporter } from "./formats/dot/index.js";
 import { gexfExporter, gexfImporter } from "./formats/gexf/index.js";
 import { gmlExporter, gmlImporter } from "./formats/gml/index.js";
@@ -20,11 +22,19 @@ import { jsonExporter, jsonImporter } from "./formats/json/index.js";
 import { neo4jExporter, neo4jImporter } from "./formats/neo4j/index.js";
 import { oboImporter } from "./formats/obo/index.js";
 import { pajekExporter, pajekImporter } from "./formats/pajek/index.js";
+import { xgmmlExporter, xgmmlImporter } from "./formats/xgmml/index.js";
 import { rankFormats, SNIFF_HEAD_BYTES } from "./sniff.js";
 /** The issue code of an input whose format no registered importer recognises. */
 export const UNKNOWN_FORMAT_CODE = "E_UNKNOWN_FORMAT";
 /** The keys of ImportGraphOptions that belong to the registry, never to an importer. */
-const REGISTRY_KEYS = new Set(["format", "filename", "mimeType", "builder", "freeze"]);
+const REGISTRY_KEYS = new Set([
+    "format",
+    "filename",
+    "mimeType",
+    "builder",
+    "freeze",
+    "maxEmptyCells",
+]);
 /**
  * A registry of importers and exporters by format name. Registration order is the tie-break
  * order of sniffing (design section 8.2); the default registry lists the built-in formats in the
@@ -146,7 +156,7 @@ export class FormatRegistry {
      */
     async importGraph(input, options = {}) {
         const chosen = await this.choose(input, options);
-        const builder = seededBuilder(options);
+        const builder = seededBuilder(options, chosen.importer.format);
         let report;
         try {
             report = await chosen.importer.import(chosen.source, builder, importerOptions(options));
@@ -173,12 +183,12 @@ export class FormatRegistry {
         let reports;
         try {
             if (importer.importAll === undefined) {
-                builders.push(seededBuilder(options));
+                builders.push(seededBuilder(options, importer.format));
                 reports = [await importer.import(chosen.source, builders[0], importerOptions(options))];
             }
             else {
                 reports = await importer.importAll(chosen.source, () => {
-                    const builder = seededBuilder(options);
+                    const builder = seededBuilder(options, importer.format);
                     builders.push(builder);
                     return builder;
                 }, importerOptions(options));
@@ -282,10 +292,13 @@ export function createRegistry() {
         .registerExporter(pajekExporter)
         .registerImporter(neo4jImporter)
         .registerExporter(neo4jExporter)
+        .registerImporter(xgmmlImporter)
+        .registerExporter(xgmmlExporter)
         .registerImporter(cx2Importer)
         .registerExporter(cx2Exporter)
         .registerImporter(cxImporter)
-        .registerImporter(oboImporter);
+        .registerImporter(oboImporter)
+        .registerImporter(cysImporter);
 }
 /** The default registry: every built-in format. */
 export const registry = createRegistry();
@@ -371,19 +384,21 @@ function importerOptions(options) {
 }
 /**
  * A fresh builder seeded from the common options, `directed: true` as a placeholder the importer
- * overrides from the file.
+ * overrides from the file, that stops the import when its attributes get too sparse.
  * @param options - the importGraph options
+ * @param format - the format being read
  * @returns the builder
  */
-function seededBuilder(options) {
-    return new GraphBuilder({
+function seededBuilder(options, format) {
+    const maxEmptyCells = maxEmptyCellsOption(options.maxEmptyCells);
+    return new CellBudgetBuilder({
         weightDtype: options.weightDtype ?? "f64",
         ...options.builder,
         directed: true,
         addMissingNodes: options.addMissingNodes ?? true,
         duplicateEdges: options.duplicateEdges ?? "keep",
         selfLoops: options.selfLoops ?? "keep",
-    });
+    }, format, maxEmptyCells);
 }
 /**
  * Freeze an imported builder into an importGraph result.

package/dist/src/registry.js.map

@@ -1 +1 @@
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package/dist/src/sniff.d.ts

@@ -23,7 +23,7 @@
 import { type JsonImportDialect } from "./formats/json/dialect.js";
 import { type GraphImporter } from "./types.js";
 /** The format names of the eight built-in importers and exporters. */
-export type GraphFormatName = "gexf" | "graphml" | "gml" | "dot" | "pajek" | "csv" | "json" | "neo4j" | "cx2" | "cx" | "obo";
+export type GraphFormatName = "gexf" | "graphml" | "gml" | "dot" | "pajek" | "csv" | "json" | "neo4j" | "xgmml" | "cx2" | "cx" | "obo" | "cys";
 /**
  * The built-in format names in the default registry's order, which is also the tie-break order of
  * sniffing: the more common format wins an extension two formats claim (`.xml` GraphML before GEXF,

package/dist/src/sniff.d.ts.map

@@ -1 +1 @@
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package/dist/src/sniff.js

@@ -35,9 +35,11 @@ export const GRAPH_FORMATS = Object.freeze([
     "dot",
     "pajek",
     "neo4j",
+    "xgmml",
     "cx2",
     "cx",
     "obo",
+    "cys",
 ]);
 /** How many bytes of the input the sniffers look at; the registry reads no more than this before deciding. */
 export const SNIFF_HEAD_BYTES = 8192;

package/dist/src/sniff.js.map

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package/dist/xgmml.d.ts

@@ -0,0 +1 @@
+export * from "./src/formats/xgmml/index.js";

package/dist/xgmml.js

@@ -0,0 +1,9 @@
+import { X, a, x } from "./chunks/importer-D_e7e7LX.js";
+import { x as x2 } from "./chunks/exporter-DIeGJXAZ.js";
+export {
+  X as XGMML_ISSUE,
+  a as XGMML_LOSS,
+  x2 as xgmmlExporter,
+  x as xgmmlImporter
+};
+//# sourceMappingURL=xgmml.js.map

package/dist/xgmml.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"xgmml.js","sources":[],"sourcesContent":[],"names":[],"mappings":";;"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@graphty/graph-io",
-  "version": "0.3.19",
+  "version": "0.3.21",
   "description": "Importers and exporters (GEXF, GraphML, GML, DOT, Pajek, CSV, JSON, Neo4j) for the @graphty/graph-format snapshot",
   "author": "Adam Powers <apowers@ato.ms>",
   "type": "module",
@@ -52,6 +52,11 @@
       "import": "./dist/neo4j.js",
       "default": "./dist/neo4j.js"
     },
+    "./xgmml": {
+      "types": "./dist/xgmml.d.ts",
+      "import": "./dist/xgmml.js",
+      "default": "./dist/xgmml.js"
+    },
     "./cx2": {
       "types": "./dist/cx2.d.ts",
       "import": "./dist/cx2.js",
@@ -66,6 +71,11 @@
       "types": "./dist/obo.d.ts",
       "import": "./dist/obo.js",
       "default": "./dist/obo.js"
+    },
+    "./cys": {
+      "types": "./dist/cys.d.ts",
+      "import": "./dist/cys.js",
+      "default": "./dist/cys.js"
     }
   },
   "sideEffects": false,
@@ -99,6 +109,9 @@
     "csv",
     "json",
     "neo4j",
+    "xgmml",
+    "cys",
+    "cytoscape",
     "graph-format"
   ],
   "license": "MIT",
@@ -107,7 +120,7 @@
   },
   "homepage": "https://github.com/graphty-org/graphty-monorepo/tree/master/graph-io#readme",
   "dependencies": {
-    "@graphty/graph-format": "^1.2.6"
+    "@graphty/graph-format": "^1.3.1"
   },
   "peerDependencies": {
     "@graphty/graph-format": "^1.0.0"