@graphty/graph-io 0.3.19 → 0.3.21

package/dist/chunks/exporter-DIeGJXAZ.js.map

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+{"version":3,"file":"exporter-DIeGJXAZ.js","sources":["../../src/formats/xgmml/exporter.ts"],"sourcesContent":["/**\n * The XGMML exporter (design `design/graph-io/cytoscape-and-obo/design.md` section 1.1;\n * `research-xgmml.md` section 4.7): the Cytoscape 3.x dialect, which Cytoscape 3 opens with every\n * attribute type intact. It writes `cy:documentVersion=\"3.0\"`, the root `directed` from the\n * snapshot and `cy:directed` on every edge (Cytoscape ignores the root attribute), `type` plus\n * `cy:type` (and `cy:elementType`) on every att, positions as `graphics x y z` with y negated\n * back to screen coordinates, the importer's `graphics` json columns back as graphics attributes\n * and nested atts, containment as each group node's nested graph of `xlink:href` member\n * references (every node is declared at the top level, so the node order survives), and newline\n * and tab as character references unless `cytoscapeEscapes` asks for Cytoscape's two-character\n * form. It writes the graph's structure and columns, never styles.\n */\n\nimport { type Column, GraphFormatError, type GraphSnapshot, type NodeId } from \"@graphty/graph-format\";\n\nimport { type ChildrenCsr, childrenCsr } from \"../../children.js\";\nimport { DictHeuristic } from \"../../common/attributes.js\";\nimport { type PairFolding, pairFolding } from \"../../common/direction.js\";\nimport { escapeXmlAttribute, escapeXmlText } from \"../../common/escape.js\";\nimport { capabilities, checkCapabilities, LOSS } from \"../../common/export.js\";\nimport { formatF32, formatF64 } from \"../../common/format.js\";\nimport { type ResolvedExportOptions, resolveExportOptions } from \"../../common/options.js\";\nimport { type ExplicitWeights, explicitWeights } from \"../../common/weights.js\";\nimport { encodeChunks, joinText } from \"../../common/writer.js\";\nimport { xmlIllegalTextNotes } from \"../../common/xml.js\";\nimport { type CommonExportOptions, type ExportCapabilities, type GraphExporter, type LossNote } from \"../../types.js\";\nimport {\n    CY_NAMESPACE,\n    CYTOSCAPE_ORIGIN_NAMESPACE,\n    EDGE_ID_COLUMN,\n    FORMAT,\n    GRAPHICS_COLUMN,\n    INTERACTION_COLUMN,\n    LABEL_COLUMN,\n    META_KEY,\n    NESTED_NETWORK_COLUMN,\n    NETWORK_POINTER_COLUMN,\n    NETWORKS_COLUMN,\n    PARENT_COLUMN,\n    PARENTS_COLUMN,\n    POSITION_COLUMN,\n    SUBGRAPH_COLUMN,\n    XGMML_LOSS,\n    XGMML_NAMESPACE,\n    XGMML_ORIGIN_NAMESPACE,\n    XLINK_NAMESPACE,\n    Z_COLUMN,\n} from \"./constants.js\";\nimport { aliasesOf } from \"./emit.js\";\n\n/** The format-specific options of the XGMML exporter. */\nexport interface XgmmlExportOptions {\n    /**\n     * Write newline and tab in string values as Cytoscape's two-character `\\n` and `\\t` (what the\n     * Cytoscape writer does) instead of the character references `&#10;` and `&#9;` (default).\n     */\n    cytoscapeEscapes?: boolean | undefined;\n}\n\n/** What XGMML keeps (design section 1.1, all 16 fields). */\nconst CAPABILITIES: ExportCapabilities = capabilities({\n    mixedDirection: true,\n    multiEdges: true,\n    selfLoops: true,\n    edgeIds: \"optional\",\n    idCharset: \"any\",\n    dtypes: [\"string\", \"dict\", \"f64\", \"f32\", \"i32\", \"u32\", \"u8\", \"bool\", \"list\"],\n    components: false,\n    lists: true,\n    json: false,\n    defaults: false,\n    options: false,\n    hierarchy: true,\n    temporal: \"none\",\n    graphAttributes: true,\n    positions: true,\n    viz: false,\n});\n\n/** The roles with a slot: label (XML attribute), the edge id, containment and position. */\nconst SLOT_ROLES: ReadonlySet<string> = new Set([\"label\", \"id\", \"parent\", \"parents\", \"position\"]);\n\n/** The names the importer gives the slot columns. */\nconst ROLE_NAMES: Readonly<Record<string, string>> = Object.freeze({\n    label: LABEL_COLUMN,\n    id: EDGE_ID_COLUMN,\n    parent: PARENT_COLUMN,\n    position: POSITION_COLUMN,\n});\n\n/** Roles checkCapabilities() reports as not written (no slot in XGMML): the column is skipped. */\nconst DROPPED_ROLES: ReadonlySet<string> = new Set([\n    \"color\",\n    \"size\",\n    \"shape\",\n    \"thickness\",\n    \"start\",\n    \"end\",\n    \"timestamp\",\n    \"timestamps\",\n    \"spells\",\n    \"open\",\n    \"spellsOpen\",\n]);\n\n/** XML attributes of `<node>` and `<edge>` the importer reads itself; a column of such a name is an att. */\nconst READ_ATTRIBUTES: Readonly<Record<\"node\" | \"edge\", ReadonlySet<string>>> = {\n    node: new Set([\"id\", \"label\", \"name\"]),\n    edge: new Set([\"id\", \"label\", \"name\", \"source\", \"target\", \"weight\"]),\n};\n\n/** Roles never written as atts. */\nconst STRUCTURAL_ROLES: ReadonlySet<string> = new Set([\n    \"directed\",\n    \"pair\",\n    \"mutual\",\n    \"weight\",\n    \"parent\",\n    \"parents\",\n    \"position\",\n]);\n\n/** Node column names the importer owns; a plain column of such a name reads back renamed. */\nconst RESERVED_NODE_NAMES: ReadonlySet<string> = new Set([\n    LABEL_COLUMN,\n    POSITION_COLUMN,\n    Z_COLUMN,\n    GRAPHICS_COLUMN,\n    PARENT_COLUMN,\n    PARENTS_COLUMN,\n    SUBGRAPH_COLUMN,\n    NESTED_NETWORK_COLUMN,\n    NETWORK_POINTER_COLUMN,\n    NETWORKS_COLUMN,\n]);\n\n/** Edge column names the importer owns. */\nconst RESERVED_EDGE_NAMES: ReadonlySet<string> = new Set([EDGE_ID_COLUMN, LABEL_COLUMN, GRAPHICS_COLUMN]);\n\n/** The importer-owned names of each table. */\nconst RESERVED_NAMES: Readonly<Record<\"graph\" | \"node\" | \"edge\", ReadonlySet<string>>> = {\n    graph: new Set([GRAPHICS_COLUMN]),\n    node: RESERVED_NODE_NAMES,\n    edge: RESERVED_EDGE_NAMES,\n};\n\n/** The XGMML and Cytoscape `<graphics>` XML attributes; every other graphics key is a nested att. */\nconst GRAPHICS_ATTRIBUTES: ReadonlySet<string> = new Set([\n    \"type\",\n    \"w\",\n    \"h\",\n    \"d\",\n    \"image\",\n    \"bitmap\",\n    \"width\",\n    \"arrow\",\n    \"capstyle\",\n    \"joinstyle\",\n    \"smooth\",\n    \"splinesteps\",\n    \"justify\",\n    \"font\",\n    \"background\",\n    \"foreground\",\n    \"extent\",\n    \"start\",\n    \"style\",\n    \"stipple\",\n    \"visible\",\n    \"fill\",\n    \"outline\",\n    \"anchor\",\n]);\n\nconst I32_MAX = 2147483647;\n\n/** A note-recording callback. */\ntype NoteFn = (code: string, message: string, column?: string | null, count?: number | null) => void;\n\n/** How one column is written. */\ninterface ColumnWrite {\n    readonly column: Column;\n    readonly name: string;\n    /** \"att\" for a typed att, or the importer-owned slot it goes to. */\n    readonly kind: \"att\" | \"xml\" | \"label\" | \"graphics\" | \"z\" | \"subgraph\" | \"nested\" | \"pointer\" | \"networks\";\n    /** The att's type and cy:type; null when the source att had none. */\n    readonly type: string | null;\n    readonly cyType: string | null;\n    readonly elementType: string | null;\n}\n\n/** Everything check() and export() agree on. */\ninterface Plan {\n    readonly options: ResolvedExportOptions;\n    readonly escapes: boolean;\n    readonly notes: LossNote[];\n    readonly graph: ColumnWrite[];\n    readonly nodes: ColumnWrite[];\n    readonly edges: ColumnWrite[];\n    readonly folding: PairFolding;\n    readonly weights: ExplicitWeights;\n    readonly hierarchy: ChildrenCsr;\n    /** 1 for a node a traversal from the roots reaches; the others are written without parents. */\n    readonly reachable: Uint8Array;\n    readonly position: Column | null;\n    readonly edgeId: Column | null;\n}\n\n/**\n * The Cytoscape type of a scalar dtype and the XGMML type.\n * @param column - the column\n * @param dtype - the dtype (a list's item dtype)\n * @returns [type, cy:type]\n */\nfunction typesOf(column: Column, dtype: string | null): [string, string] {\n    if (column.meta.components > 1) {\n        return [\"string\", \"String\"];\n    }\n    switch (dtype) {\n        case \"bool\":\n            return [\"boolean\", \"Boolean\"];\n        case \"i32\":\n        case \"u8\":\n            return [\"integer\", \"Integer\"];\n        case \"u32\":\n            return maxValue(column) > I32_MAX ? [\"integer\", \"Long\"] : [\"integer\", \"Integer\"];\n        case \"f32\":\n        case \"f64\":\n            return column.meta.origin?.type === \"long\" && allSafeIntegers(column)\n                ? [\"integer\", \"Long\"]\n                : [\"real\", \"Double\"];\n        default:\n            return [\"string\", \"String\"];\n    }\n}\n\n/**\n * Whether every value of a numeric column (or of its list items) is a safe integer.\n * @param column - the column\n * @returns true when Long can carry every value\n */\nfunction allSafeIntegers(column: Column): boolean {\n    for (let r = 0; r < column.length; r++) {\n        if (!column.isSet(r)) {\n            continue;\n        }\n        const items: unknown[] = column.dtype === \"list\" ? [...column.sliceOf(r)] : [column.value(r)];\n        if (!items.every((item) => typeof item === \"number\" && Number.isSafeInteger(item))) {\n            return false;\n        }\n    }\n    return true;\n}\n\n/**\n * The largest value of a u32 column (or of its list items).\n * @param column - the column\n * @returns the maximum, 0 when empty\n */\nfunction maxValue(column: Column): number {\n    let max = 0;\n    for (let r = 0; r < column.length; r++) {\n        if (!column.isSet(r)) {\n            continue;\n        }\n        const value = column.value(r);\n        const items: unknown[] = column.dtype === \"list\" ? [...column.sliceOf(r)] : [value];\n        for (const item of items) {\n            if (typeof item === \"number\" && item > max) {\n                max = item;\n            }\n        }\n    }\n    return max;\n}\n\n/**\n * Whether a column came from the XGMML importer's own slot of that name.\n * @param column - the column\n * @param namespace - the origin namespace the importer gives it\n * @returns true for an importer-owned column\n */\nfunction owned(column: Column, namespace: string): boolean {\n    const { origin } = column.meta;\n    return origin !== null && origin.namespace === namespace;\n}\n\n/**\n * Plan the columns of one table.\n * @param table - the columns\n * @param domain - the table\n * @param snapshot - the snapshot\n * @param note - the recorder\n * @returns the writes\n */\nfunction planTable(\n    table: Iterable<Column>,\n    domain: \"graph\" | \"node\" | \"edge\",\n    snapshot: GraphSnapshot,\n    note: NoteFn,\n): ColumnWrite[] {\n    const writes: ColumnWrite[] = [];\n    const reserved = RESERVED_NAMES[domain];\n    const hasLabelRole =\n        domain !== \"graph\" && (domain === \"node\" ? snapshot.nodes : snapshot.edges).byRole(\"label\") !== null;\n    for (const column of table) {\n        const { meta } = column;\n        if (\n            meta.role !== null &&\n            (STRUCTURAL_ROLES.has(meta.role) ||\n                DROPPED_ROLES.has(meta.role) ||\n                meta.role === \"id\" ||\n                meta.role === \"timeText\")\n        ) {\n            continue;\n        }\n        const kind = slotOf(column, domain, hasLabelRole);\n        const set = column.length - column.nullCount;\n        if (kind === \"att\" && reserved.has(meta.name)) {\n            note(\n                LOSS.COLUMN_NAME_CHANGED,\n                `${domain} column \"${meta.name}\" is named like a column the XGMML importer owns and reads back renamed`,\n                meta.name,\n                set,\n            );\n        } else if (kind === \"label\" && meta.dtype !== \"string\" && meta.dtype !== \"dict\") {\n            note(\n                LOSS.DTYPE,\n                `${domain} label column \"${meta.name}\" (${meta.dtype}) is written as text and reads back as string`,\n                meta.name,\n                set,\n            );\n        } else if (kind === \"label\" && meta.role === null) {\n            note(\n                LOSS.ROLE_ASSUMED,\n                `${domain} column \"${meta.name}\" is written as the label and reads back with the label role`,\n                meta.name,\n                set,\n            );\n        }\n        if (kind === \"att\") {\n            attNotes(column, domain, note);\n        }\n        const item = meta.dtype === \"list\" ? meta.itemDtype : meta.dtype;\n        const [type, cyType] = meta.dtype === \"list\" ? [\"list\", \"List\"] : declaredTypes(column, typesOf(column, item));\n        writes.push({\n            column,\n            name: meta.name,\n            kind,\n            type,\n            cyType,\n            elementType: meta.dtype === \"list\" ? typesOf(column, item)[1] : null,\n        });\n    }\n    return writes;\n}\n\n/**\n * Where a column goes.\n * @param column - the column\n * @param domain - the table\n * @param hasLabelRole - whether the table has a label role column\n * @returns the slot\n */\nfunction slotOf(column: Column, domain: \"graph\" | \"node\" | \"edge\", hasLabelRole: boolean): ColumnWrite[\"kind\"] {\n    const { meta } = column;\n    if (domain !== \"graph\" && untypedAttribute(column, domain)) {\n        return \"xml\";\n    }\n    if (\n        meta.role === \"label\" ||\n        (!hasLabelRole &&\n            domain !== \"graph\" &&\n            meta.role === null &&\n            meta.name === LABEL_COLUMN &&\n            (meta.dtype === \"string\" || meta.dtype === \"dict\"))\n    ) {\n        return \"label\";\n    }\n    if (meta.dtype === \"json\" && meta.name === GRAPHICS_COLUMN && owned(column, XGMML_ORIGIN_NAMESPACE)) {\n        return \"graphics\";\n    }\n    if (domain !== \"node\") {\n        return \"att\";\n    }\n    if (meta.name === Z_COLUMN && meta.dtype === \"f64\" && meta.role === null) {\n        return \"z\";\n    }\n    if (meta.name === SUBGRAPH_COLUMN && meta.dtype === \"json\" && owned(column, XGMML_ORIGIN_NAMESPACE)) {\n        return \"subgraph\";\n    }\n    if (meta.name === NESTED_NETWORK_COLUMN && meta.dtype === \"string\" && owned(column, CYTOSCAPE_ORIGIN_NAMESPACE)) {\n        return \"nested\";\n    }\n    if (meta.name === NETWORK_POINTER_COLUMN && meta.dtype === \"string\" && owned(column, XGMML_ORIGIN_NAMESPACE)) {\n        return \"pointer\";\n    }\n    if (meta.name === NETWORKS_COLUMN && meta.dtype === \"list\" && owned(column, XGMML_ORIGIN_NAMESPACE)) {\n        return \"networks\";\n    }\n    return \"att\";\n}\n\n/**\n * Whether a column came from an XML attribute of the element (the importer's 5.1 text grammar:\n * xgmml origin, no declared type) and can be written back as one, so it reads back the same.\n * @param column - the column\n * @param domain - node or edge\n * @returns true to write it as an XML attribute\n */\nfunction untypedAttribute(column: Column, domain: \"node\" | \"edge\"): boolean {\n    const { meta } = column;\n    const { origin } = meta;\n    return (\n        origin !== null &&\n        origin.format === FORMAT &&\n        origin.type === null &&\n        origin.namespace === null &&\n        meta.role === null &&\n        meta.components === 1 &&\n        (meta.dtype === \"string\" || meta.dtype === \"bool\" || meta.dtype === \"i32\" || meta.dtype === \"f64\") &&\n        /^[A-Za-z_][A-Za-z0-9_.-]*$/.test(meta.name) &&\n        !READ_ATTRIBUTES[domain].has(meta.name)\n    );\n}\n\n/**\n * The type and cy:type of an att: the source's own declaration when the column came from an\n * XGMML att that declared only `type` (a draft or 2.x file), else both.\n * @param column - the column\n * @param types - the type and cy:type of its dtype\n * @returns the pair to write; a null member is not written\n */\nfunction declaredTypes(column: Column, types: [string, string]): [string | null, string | null] {\n    const { origin } = column.meta;\n    if (origin !== null && origin.format === FORMAT && origin.type === types[0] && column.meta.components === 1) {\n        return [types[0], null];\n    }\n    return types;\n}\n\n/**\n * The notes of a column written as a typed att: dtypes Cytoscape widens, json written as text,\n * literal backslash escapes, the string / dict heuristic.\n * @param column - the column\n * @param domain - the table\n * @param note - the recorder\n */\nfunction attNotes(column: Column, domain: string, note: NoteFn): void {\n    const { meta } = column;\n    const set = column.length - column.nullCount;\n    const label = `${domain} column \"${meta.name}\"`;\n    const item = meta.dtype === \"list\" ? meta.itemDtype : meta.dtype;\n    if (meta.dtype === \"json\") {\n        note(\n            XGMML_LOSS.JSON_AS_STRING,\n            `${label} holds nested values; they are written as JSON text and read back as strings`,\n            meta.name,\n            set,\n        );\n        return;\n    }\n    if (item === \"f32\" || item === \"u8\" || item === \"u32\") {\n        note(\n            XGMML_LOSS.WIDENED_TYPE,\n            `${label} (${item}) is written as a wider Cytoscape type and reads back as ${readBackDtype(column, item)}`,\n            meta.name,\n            set,\n        );\n    }\n    if (item === \"string\" || item === \"dict\") {\n        let escapes = 0;\n        for (let r = 0; r < column.length; r++) {\n            if (column.isSet(r)) {\n                const values = column.dtype === \"list\" ? [...column.sliceOf(r)] : [column.value(r)];\n                if (values.some((v) => typeof v === \"string\" && /\\\\[nt]/.test(v))) {\n                    escapes++;\n                }\n            }\n        }\n        if (escapes > 0) {\n            note(\n                XGMML_LOSS.BACKSLASH_ESCAPE,\n                `${label}: ${escapes} value(s) hold a literal \\\\n or \\\\t, which Cytoscape's escape convention reads back as a newline or tab`,\n                meta.name,\n                escapes,\n            );\n        }\n    }\n    if (meta.dtype === \"string\" || meta.dtype === \"dict\") {\n        const heuristic = new DictHeuristic();\n        for (let r = 0; r < column.length && !heuristic.decided; r++) {\n            if (column.isSet(r)) {\n                heuristic.observe(column.value(r) as string);\n            }\n        }\n        const readsAs = heuristic.decide();\n        if (readsAs !== meta.dtype) {\n            note(\n                XGMML_LOSS.STORAGE_CLASS_CHANGED,\n                `${label} reads back as ${readsAs} (the cardinality heuristic)`,\n                meta.name,\n                null,\n            );\n        }\n    }\n}\n\n/**\n * The dtype a widened column reads back as.\n * @param column - the column\n * @param item - its dtype (a list's item dtype)\n * @returns the dtype the importer gives it\n */\nfunction readBackDtype(column: Column, item: string): string {\n    if (item === \"u8\" || (item === \"u32\" && maxValue(column) <= I32_MAX)) {\n        return \"i32\";\n    }\n    return \"f64\";\n}\n\n/**\n * Build the plan and its loss notes.\n * @param snapshot - the snapshot\n * @param options - the common options\n * @param escapes - the cytoscapeEscapes option\n * @returns the plan\n */\nfunction planExport(snapshot: GraphSnapshot, options: ResolvedExportOptions, escapes: boolean): Plan {\n    const notes = checkCapabilities(snapshot, CAPABILITIES, options, {\n        roles: SLOT_ROLES,\n        roleNames: ROLE_NAMES,\n        positionDtype: \"f32\",\n    }).filter((n) => n.code !== LOSS.JSON);\n    const note: NoteFn = (code, message, column = null, count = null): void => {\n        notes.push(Object.freeze({ code, message, column, count }));\n    };\n    notes.push(...xmlIllegalTextNotes(snapshot));\n    const folding = pairFolding(snapshot);\n    if (folding.mutualCount > 0) {\n        note(\n            XGMML_LOSS.MUTUAL_EXPANDED,\n            `${folding.mutualCount} mutual pair(s) are written as two directed edges; the mutual mark is lost`,\n            null,\n            folding.mutualCount,\n        );\n    }\n    const numericIds = countNumericIds(snapshot);\n    if (numericIds > 0) {\n        note(\n            XGMML_LOSS.ID_TEXT_TYPE,\n            `${numericIds} numeric node id(s) are written as text and read back as strings`,\n            null,\n            numericIds,\n        );\n    }\n    const edgeId = snapshot.edges.byRole(\"id\");\n    if (edgeId !== null && edgeId.dtype !== \"string\" && edgeId.dtype !== \"dict\") {\n        note(\n            XGMML_LOSS.EDGE_ID_TEXT,\n            `edge id column \"${edgeId.meta.name}\" (${edgeId.dtype}) is written as text and reads back as strings`,\n            edgeId.meta.name,\n            null,\n        );\n    }\n    const hierarchy = childrenCsr(snapshot);\n    if (hierarchy.unreachable > 0) {\n        note(\n            XGMML_LOSS.PARENT_CYCLE,\n            `${hierarchy.unreachable} node(s) whose parent chain never reaches a root are written at the top level and lose their parent`,\n            null,\n            hierarchy.unreachable,\n        );\n    }\n    const parents = snapshot.nodes.byRole(\"parents\");\n    if (parents !== null && snapshot.nodes.byRole(\"parent\") !== null) {\n        note(\n            XGMML_LOSS.PARENTS_DROPPED,\n            `parents column \"${parents.meta.name}\" is not written: the \"parent\" column is the containment written`,\n            parents.meta.name,\n            parents.length - parents.nullCount,\n        );\n    } else if (parents !== null && !multiParent(parents)) {\n        note(\n            LOSS.COLUMN_NAME_CHANGED,\n            `parents column \"${parents.meta.name}\" holds one parent per node and reads back as the \"parent\" column`,\n            parents.meta.name,\n            null,\n        );\n    }\n    const position = snapshot.nodes.byRole(\"position\");\n    if (position !== null) {\n        positionNotes(position, snapshot, note);\n    }\n    interactionNote(snapshot, note);\n    const weights = explicitWeights(snapshot);\n    for (const column of snapshot.edges) {\n        if (column.meta.name === \"weight\" && column.meta.role === null && !weights.weighted) {\n            note(LOSS.WEIGHT_KEY_CLASH, `edge column \"weight\" reads back as THE weight`, \"weight\", null);\n        }\n    }\n    return {\n        options,\n        escapes,\n        notes,\n        graph: planTable(snapshot.graph, \"graph\", snapshot, note),\n        nodes: planTable(snapshot.nodes, \"node\", snapshot, note),\n        edges: planTable(snapshot.edges, \"edge\", snapshot, note),\n        folding,\n        weights,\n        hierarchy,\n        reachable: reachableNodes(snapshot.nodeCount, hierarchy),\n        position,\n        edgeId,\n    };\n}\n\n/**\n * The note for edge labels the importer reads as Cytoscape label aliases (`a (i) b`): without an\n * `interaction` column they read back with one, as Cytoscape fills it.\n * @param snapshot - the snapshot\n * @param note - the recorder\n */\nfunction interactionNote(snapshot: GraphSnapshot, note: NoteFn): void {\n    const label = snapshot.edges.byRole(\"label\") ?? snapshot.edges.get(LABEL_COLUMN);\n    if (label === null || snapshot.edges.get(INTERACTION_COLUMN) !== null) {\n        return;\n    }\n    let shaped = 0;\n    for (let e = 0; e < label.length; e++) {\n        if (label.isSet(e) && aliasesOf(scalarText(label.value(e))) !== null) {\n            shaped++;\n        }\n    }\n    if (shaped > 0) {\n        note(\n            XGMML_LOSS.INTERACTION_FROM_LABEL,\n            `${shaped} edge label(s) have Cytoscape's \"a (i) b\" shape and read back with an \"${INTERACTION_COLUMN}\" column`,\n            INTERACTION_COLUMN,\n            shaped,\n        );\n    }\n}\n\n/**\n * The nodes a traversal of the containment from its roots reaches.\n * @param nodeCount - the number of nodes\n * @param hierarchy - the children CSR\n * @returns 1 per reached node\n */\nfunction reachableNodes(nodeCount: number, hierarchy: ChildrenCsr): Uint8Array {\n    const reached = new Uint8Array(nodeCount);\n    const stack = Array.from(hierarchy.roots);\n    for (const root of stack) {\n        reached[root] = 1;\n    }\n    while (stack.length > 0) {\n        for (const child of hierarchy.childrenOf(stack.pop() as number)) {\n            if (reached[child] === 0) {\n                reached[child] = 1;\n                stack.push(child);\n            }\n        }\n    }\n    return reached;\n}\n\n/**\n * Whether a parents column gives some node more than one parent.\n * @param column - the parents column\n * @returns true when a row holds two or more parents\n */\nfunction multiParent(column: Column): boolean {\n    for (let r = 0; r < column.length; r++) {\n        if (column.isSet(r) && column.dtype === \"list\" && column.sliceOf(r).length > 1) {\n            return true;\n        }\n    }\n    return false;\n}\n\n/**\n * The notes of a position column: its shape, non-finite coordinates, and a z that reads back in\n * the z column.\n * @param position - the position column\n * @param snapshot - the snapshot\n * @param note - the recorder\n */\nfunction positionNotes(position: Column, snapshot: GraphSnapshot, note: NoteFn): void {\n    const { meta } = position;\n    if (meta.components !== 3) {\n        note(\n            XGMML_LOSS.POSITION,\n            `position column \"${meta.name}\" has ${meta.components} component(s) and reads back with 3`,\n            meta.name,\n            null,\n        );\n    }\n    let nonFinite = 0;\n    let depth = 0;\n    for (let r = 0; r < position.length; r++) {\n        if (!position.isSet(r)) {\n            continue;\n        }\n        const xyz = Array.from(position.value(r) as ArrayLike<number>);\n        if (xyz.slice(0, 2).some((v) => !Number.isFinite(v))) {\n            nonFinite++;\n        } else if ((xyz[2] ?? 0) !== 0) {\n            depth++;\n        }\n    }\n    if (nonFinite > 0) {\n        note(\n            XGMML_LOSS.POSITION,\n            `${nonFinite} position(s) with a non-finite coordinate are not written`,\n            meta.name,\n            nonFinite,\n        );\n    }\n    const zColumn = snapshot.nodes.get(Z_COLUMN);\n    if (depth > 0) {\n        note(\n            XGMML_LOSS.POSITION,\n            zColumn === null\n                ? `${depth} position(s) have a z; it is written as graphics z and reads back in the z column (zAs: \"position\" reads it as a coordinate)`\n                : `${depth} position(s) have a z, but graphics z holds the z column; the position z is lost`,\n            meta.name,\n            depth,\n        );\n    }\n}\n\n/**\n * Node ids that are numbers (written as text, read back as strings).\n * @param snapshot - the snapshot\n * @returns the count\n */\nfunction countNumericIds(snapshot: GraphSnapshot): number {\n    let n = 0;\n    for (let i = 0; i < snapshot.nodeCount; i++) {\n        if (typeof snapshot.ids.idOf(i) === \"number\") {\n            n++;\n        }\n    }\n    return n;\n}\n\n/**\n * The text of a scalar for an att value.\n * @param value - the value\n * @param dtype - its dtype\n * @param escapes - Cytoscape's two-character newline and tab\n * @returns the attribute text, escaped\n */\nfunction valueText(value: unknown, dtype: string | null, escapes: boolean): string {\n    let text: string;\n    if (typeof value === \"boolean\") {\n        text = value ? \"1\" : \"0\";\n    } else if (typeof value === \"number\") {\n        text = dtype === \"f32\" ? formatF32(value) : formatF64(value);\n    } else if (typeof value === \"string\") {\n        text = escapes ? value.replace(/\\n/g, \"\\\\n\").replace(/\\t/g, \"\\\\t\") : value;\n    } else if (ArrayBuffer.isView(value)) {\n        text = JSON.stringify(Array.from(value as unknown as ArrayLike<number>));\n    } else {\n        text = JSON.stringify(value) ?? \"\";\n    }\n    return escapeXmlAttribute(text);\n}\n\n/**\n * The text of a scalar cell (a label, an edge id, a graphics value): numbers in their shortest\n * form, anything that is not a scalar as JSON.\n * @param value - the value\n * @returns the text\n */\nfunction scalarText(value: unknown): string {\n    if (typeof value === \"string\") {\n        return value;\n    }\n    if (typeof value === \"number\") {\n        return formatF64(value);\n    }\n    if (typeof value === \"boolean\") {\n        return value ? \"true\" : \"false\";\n    }\n    return JSON.stringify(value) ?? \"\";\n}\n\n/**\n * The text of an id.\n * @param id - the id\n * @returns the text\n */\nfunction idText(id: NodeId): string {\n    return typeof id === \"number\" ? formatF64(id) : id;\n}\n\n/**\n * The XML attributes of one row: the columns that came from XML attributes (`untypedAttribute`).\n * @param writes - the column writes of the table\n * @param row - the row\n * @returns the attributes, each with a leading space\n */\nfunction xmlAttributesOf(writes: readonly ColumnWrite[], row: number): string {\n    let out = \"\";\n    for (const w of writes) {\n        if (w.kind === \"xml\" && w.column.isSet(row)) {\n            out += ` ${w.name}=\"${escapeXmlAttribute(scalarText(w.column.value(row)))}\"`;\n        }\n    }\n    return out;\n}\n\n/**\n * The atts of one row of a table.\n * @param writes - the column writes of the table\n * @param row - the row\n * @param first - whether this is the table's first row (an all-unset column is declared there)\n * @param plan - the plan\n * @param indent - the indentation\n * @yields the att elements\n * @returns nothing\n */\nfunction* attsOf(\n    writes: readonly ColumnWrite[],\n    row: number,\n    first: boolean,\n    plan: Plan,\n    indent: string,\n): Generator<string, void, undefined> {\n    for (const w of writes) {\n        if (w.kind !== \"att\") {\n            continue;\n        }\n        const { column } = w;\n        const isSet = column.isSet(row);\n        if (!isSet && !(first && column.nullCount === column.length)) {\n            continue;\n        }\n        const name = `${indent}<att name=\"${escapeXmlAttribute(w.name)}\"`;\n        const types = `${w.type === null ? \"\" : ` type=\"${w.type}\"`}${w.cyType === null ? \"\" : ` cy:type=\"${w.cyType}\"`}`;\n        const extra = `${column.meta.extra.hidden === true ? ' cy:hidden=\"1\"' : \"\"}${column.meta.extra.equation === true ? ' cy:equation=\"1\"' : \"\"}`;\n        if (!isSet) {\n            yield `${name}${types}${w.elementType === null ? \"\" : ` cy:elementType=\"${w.elementType}\"`}${extra}/>\\n`;\n            continue;\n        }\n        if (column.dtype === \"list\") {\n            const items = [...column.sliceOf(row)];\n            const [itemType, itemCy] = typesOf(column, column.meta.itemDtype);\n            yield `${name}${types} cy:elementType=\"${w.elementType ?? \"String\"}\"${extra}${items.length === 0 ? \"/>\" : \">\"}\\n`;\n            if (items.length > 0) {\n                for (const item of items) {\n                    yield `${indent}    <att name=\"${escapeXmlAttribute(w.name)}\" value=\"${valueText(item, column.meta.itemDtype, plan.escapes)}\" type=\"${itemType}\" cy:type=\"${itemCy}\"/>\\n`;\n                }\n                yield `${indent}</att>\\n`;\n            }\n            continue;\n        }\n        yield `${name} value=\"${valueText(column.value(row), column.dtype, plan.escapes)}\"${types}${extra}/>\\n`;\n    }\n}\n\n/**\n * A graphics record as `<graphics>` XML attributes and nested atts.\n * @param record - the record (the importer's graphics json value)\n * @param coords - the x, y, z texts to write, or empty\n * @param indent - the indentation\n * @yields the graphics element\n * @returns nothing\n */\nfunction* graphicsOf(\n    record: Record<string, unknown> | null,\n    coords: readonly [string, string][],\n    indent: string,\n): Generator<string, void, undefined> {\n    const attrs: [string, string][] = [...coords];\n    const nested: [string, unknown][] = [];\n    for (const [key, value] of Object.entries(record ?? {})) {\n        if (key === \"Line\") {\n            nested.push([key, value]);\n        } else if (typeof value === \"string\" && (GRAPHICS_ATTRIBUTES.has(key) || key.startsWith(\"cy:\"))) {\n            attrs.push([key, value]);\n        } else {\n            nested.push([key, value]);\n        }\n    }\n    if (attrs.length === 0 && nested.length === 0) {\n        return;\n    }\n    const head = `${indent}<graphics${attrs.map(([k, v]) => ` ${k}=\"${escapeXmlAttribute(v)}\"`).join(\"\")}`;\n    if (nested.length === 0) {\n        yield `${head}/>\\n`;\n        return;\n    }\n    yield `${head}>\\n`;\n    for (const [key, value] of nested) {\n        if (key === \"Line\" && Array.isArray(value)) {\n            yield `${indent}    <Line>\\n`;\n            for (const point of value) {\n                const entries =\n                    typeof point === \"object\" && point !== null ? Object.entries(point as Record<string, unknown>) : [];\n                yield `${indent}        <point${entries.map(([k, v]) => ` ${k}=\"${escapeXmlAttribute(String(v))}\"`).join(\"\")}/>\\n`;\n            }\n            yield `${indent}    </Line>\\n`;\n        } else {\n            yield* jsonAtt(key, value, `${indent}    `);\n        }\n    }\n    yield `${indent}</graphics>\\n`;\n}\n\n/**\n * A graphics value as an att: a string as its value, an array as a list of child atts, a record\n * as named child atts (a record of strings with no further structure keeps its keys).\n * @param name - the att name\n * @param value - the value\n * @param indent - the indentation\n * @yields the att element\n * @returns nothing\n */\nfunction* jsonAtt(name: string | null, value: unknown, indent: string): Generator<string, void, undefined> {\n    const nameAttr = name === null ? \"\" : ` name=\"${escapeXmlAttribute(name)}\"`;\n    if (Array.isArray(value)) {\n        yield `${indent}<att${nameAttr} type=\"list\">\\n`;\n        for (const item of value) {\n            yield* jsonAtt(name, item, `${indent}    `);\n        }\n        yield `${indent}</att>\\n`;\n    } else if (typeof value === \"object\" && value !== null) {\n        const entries = Object.entries(value as Record<string, unknown>);\n        if (\n            name !== null &&\n            entries.every(([, v]) => typeof v === \"string\") &&\n            entries.length <= 3 &&\n            entries.every(([k]) => /^[a-z]$/.test(k))\n        ) {\n            yield `${indent}<att${nameAttr}${entries.map(([k, v]) => ` ${k}=\"${escapeXmlAttribute(v as string)}\"`).join(\"\")}/>\\n`;\n            return;\n        }\n        yield `${indent}<att${nameAttr}>\\n`;\n        for (const [key, item] of entries) {\n            yield* jsonAtt(key, item, `${indent}    `);\n        }\n        yield `${indent}</att>\\n`;\n    } else if (value === null || value === undefined) {\n        yield `${indent}<att${nameAttr} type=\"string\"/>\\n`;\n    } else {\n        yield `${indent}<att${nameAttr} value=\"${escapeXmlAttribute(scalarText(value))}\" type=\"string\"/>\\n`;\n    }\n}\n\n/**\n * The importer's slot column of a kind, if the table has it.\n * @param writes - the writes\n * @param kind - the slot\n * @returns the column, or null\n */\nfunction slot(writes: readonly ColumnWrite[], kind: ColumnWrite[\"kind\"]): Column | null {\n    return writes.find((w) => w.kind === kind)?.column ?? null;\n}\n\n/**\n * The value of a set cell, else null.\n * @param column - the column, or null\n * @param row - the row\n * @returns the value\n */\nfunction cellOf(column: Column | null, row: number): unknown {\n    return column !== null && column.isSet(row) ? column.value(row) : null;\n}\n\n/**\n * The graphics coordinates of a node: x, y negated back to screen coordinates, z.\n * @param plan - the plan\n * @param zColumn - the z column, or null\n * @param node - the node\n * @returns the coordinates as XML attributes\n */\nfunction coordsOf(plan: Plan, zColumn: Column | null, node: number): [string, string][] {\n    const out: [string, string][] = [];\n    const xyz = cellOf(plan.position, node);\n    if (xyz !== null) {\n        const [x, y, z] = Array.from(xyz as ArrayLike<number>);\n        if (Number.isFinite(x) && Number.isFinite(y)) {\n            out.push([\"x\", formatF32(x)], [\"y\", formatF32(y === 0 ? 0 : -y)]);\n            if (zColumn === null && z !== undefined && z !== 0 && Number.isFinite(z)) {\n                out.push([\"z\", formatF32(z)]);\n            }\n        }\n    }\n    const z = cellOf(zColumn, node);\n    if (typeof z === \"number\") {\n        out.push([\"z\", formatF64(z)]);\n    }\n    return out;\n}\n\n/**\n * The XML of one node and its group graph, whose members are `xlink:href` references (every\n * node is declared at the top level, in index order).\n * @param snapshot - the snapshot\n * @param plan - the plan\n * @param node - the node\n * @param indent - the indentation\n * @yields the node element\n * @returns nothing\n */\nfunction* nodeOf(\n    snapshot: GraphSnapshot,\n    plan: Plan,\n    node: number,\n    indent: string,\n): Generator<string, void, undefined> {\n    const labelCol = slot(plan.nodes, \"label\");\n    const label = cellOf(labelCol, node);\n    yield `${indent}<node id=\"${escapeXmlAttribute(idText(snapshot.ids.idOf(node)))}\"${label === null ? \"\" : ` label=\"${escapeXmlAttribute(scalarText(label))}\"`}${xmlAttributesOf(plan.nodes, node)}>\\n`;\n    const inner = `${indent}    `;\n    yield* attsOf(plan.nodes, node, node === 0, plan, inner);\n    const children = plan.reachable[node] === 1 ? plan.hierarchy.childrenOf(node) : [];\n    const nested = cellOf(slot(plan.nodes, \"nested\"), node);\n    const pointer = cellOf(slot(plan.nodes, \"pointer\"), node);\n    const subgraph = cellOf(slot(plan.nodes, \"subgraph\"), node);\n    if (children.length > 0 || subgraph !== null) {\n        const sub = (subgraph ?? {}) as Record<string, unknown>;\n        yield `${inner}<att name=\"__isGroup\" value=\"1\" type=\"boolean\" cy:type=\"Boolean\" cy:hidden=\"1\"/>\\n`;\n        const id = typeof sub.id === \"string\" ? ` id=\"${escapeXmlAttribute(sub.id)}\"` : \"\";\n        const lbl = typeof sub.label === \"string\" ? ` label=\"${escapeXmlAttribute(sub.label)}\"` : \"\";\n        yield `${inner}<att>\\n${inner}    <graph${id}${lbl}>\\n`;\n        const atts =\n            typeof sub.atts === \"object\" && sub.atts !== null\n                ? Object.entries(sub.atts as Record<string, unknown>)\n                : [];\n        for (const [key, value] of atts) {\n            yield* jsonAtt(key, value, `${inner}        `);\n        }\n        for (const child of children) {\n            yield `${inner}        <node xlink:href=\"#${escapeXmlAttribute(idText(snapshot.ids.idOf(child)))}\"/>\\n`;\n        }\n        yield `${inner}    </graph>\\n${inner}</att>\\n`;\n    } else if (typeof nested === \"string\") {\n        yield `${inner}<att>\\n${inner}    <graph label=\"${escapeXmlAttribute(nested)}\"/>\\n${inner}</att>\\n`;\n    } else if (typeof pointer === \"string\") {\n        yield `${inner}<att>\\n${inner}    <graph xlink:href=\"${escapeXmlAttribute(pointer)}\"/>\\n${inner}</att>\\n`;\n    }\n    const graphics = cellOf(slot(plan.nodes, \"graphics\"), node) as Record<string, unknown> | null;\n    yield* graphicsOf(graphics, coordsOf(plan, slot(plan.nodes, \"z\"), node), inner);\n    yield `${indent}</node>\\n`;\n}\n\n/**\n * The document, as string parts; the plan (and the E_ conditions it throws) is made when the\n * first part is asked for.\n * @param snapshot - the snapshot\n * @param options - the options\n * @yields the XML text\n * @returns nothing\n */\nfunction* write(\n    snapshot: GraphSnapshot,\n    options: (XgmmlExportOptions & CommonExportOptions) | undefined,\n): Generator<string, void, undefined> {\n    const plan = planFor(snapshot, options);\n    const meta = snapshot.meta.extra[META_KEY] as { graphId?: unknown; directed?: unknown } | undefined;\n    const graphId = typeof meta?.graphId === \"string\" ? ` id=\"${escapeXmlAttribute(meta.graphId)}\"` : \"\";\n    // Every edge carries cy:directed, so when they all agree the root attribute does not decide\n    // the direction and the source's own text is written back.\n    const keep =\n        (meta?.directed === \"0\" || meta?.directed === \"1\") &&\n        snapshot.edgeCount > 0 &&\n        snapshot.edges.byRole(\"directed\") === null;\n    let directed = snapshot.directed ? \"1\" : \"0\";\n    if (keep) {\n        directed = meta?.directed as string;\n    }\n    const name = snapshot.meta.name === null ? \"\" : ` label=\"${escapeXmlAttribute(snapshot.meta.name)}\"`;\n    yield '<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"yes\"?>\\n';\n    yield `<graph${graphId}${name} directed=\"${directed}\" cy:documentVersion=\"3.0\" xmlns:dc=\"http://purl.org/dc/elements/1.1/\" xmlns:xlink=\"${XLINK_NAMESPACE}\" xmlns:rdf=\"http://www.w3.org/1999/02/22-rdf-syntax-ns#\" xmlns:cy=\"${CY_NAMESPACE}\" xmlns=\"${XGMML_NAMESPACE}\">\\n`;\n    yield* metadataOf(snapshot);\n    yield* attsOf(plan.graph, 0, true, plan, \"    \");\n    yield* graphicsOf(cellOf(slot(plan.graph, \"graphics\"), 0) as Record<string, unknown> | null, [], \"    \");\n    for (let u = 0; u < snapshot.nodeCount; u++) {\n        yield* nodeOf(snapshot, plan, u, \"    \");\n    }\n    yield* networksOf(snapshot, plan);\n    yield* edgesOf(snapshot, plan);\n    yield \"</graph>\\n\";\n}\n\n/**\n * The RDF network metadata, when the snapshot has a description or a creation date.\n * @param snapshot - the snapshot\n * @yields the networkMetadata att\n * @returns nothing\n */\nfunction* metadataOf(snapshot: GraphSnapshot): Generator<string, void, undefined> {\n    const { name, description, created } = snapshot.meta;\n    if (description === null && created === null) {\n        return;\n    }\n    yield '    <att name=\"networkMetadata\">\\n        <rdf:RDF>\\n            <rdf:Description rdf:about=\"http://www.cytoscape.org/\">\\n';\n    if (name !== null) {\n        yield `                <dc:title>${escapeXmlText(name)}</dc:title>\\n`;\n    }\n    if (description !== null) {\n        yield `                <dc:description>${escapeXmlText(description)}</dc:description>\\n`;\n    }\n    if (created !== null) {\n        yield `                <dc:date>${escapeXmlText(created)}</dc:date>\\n`;\n    }\n    yield \"            </rdf:Description>\\n        </rdf:RDF>\\n    </att>\\n\";\n}\n\n/**\n * The root-level subgraphs of an `xgmml.networks` membership column.\n * @param snapshot - the snapshot\n * @param plan - the plan\n * @yields the subgraph atts\n * @returns nothing\n */\nfunction* networksOf(snapshot: GraphSnapshot, plan: Plan): Generator<string, void, undefined> {\n    const column = slot(plan.nodes, \"networks\");\n    if (column?.dtype !== \"list\") {\n        return;\n    }\n    const members = new Map<string, number[]>();\n    for (let u = 0; u < snapshot.nodeCount; u++) {\n        for (const id of column.isSet(u) ? column.sliceOf(u) : []) {\n            const list = members.get(String(id)) ?? [];\n            list.push(u);\n            members.set(String(id), list);\n        }\n    }\n    for (const [id, nodes] of members) {\n        yield `    <att>\\n        <graph id=\"${escapeXmlAttribute(id)}\">\\n`;\n        for (const u of nodes) {\n            yield `            <node xlink:href=\"#${escapeXmlAttribute(idText(snapshot.ids.idOf(u)))}\"/>\\n`;\n        }\n        yield \"        </graph>\\n    </att>\\n\";\n    }\n}\n\n/**\n * The edges: one per logical edge, expanded pairs folded.\n * @param snapshot - the snapshot\n * @param plan - the plan\n * @yields the edge elements\n * @returns nothing\n */\nfunction* edgesOf(snapshot: GraphSnapshot, plan: Plan): Generator<string, void, undefined> {\n    const { folding, weights } = plan;\n    const labelCol = slot(plan.edges, \"label\");\n    const graphicsCol = slot(plan.edges, \"graphics\");\n    const list = snapshot.edgeList();\n    let first = true;\n    for (let e = 0; e < snapshot.edgeCount; e++) {\n        if (folding.folded(e)) {\n            continue;\n        }\n        const u = list.src[e];\n        const v = list.dst[e];\n        const directed = snapshot.directed && folding.sourceDirected(e);\n        const id = cellOf(plan.edgeId, e);\n        const label = cellOf(labelCol, e);\n        const weight = weights.text(e);\n        yield `    <edge${id === null ? \"\" : ` id=\"${escapeXmlAttribute(scalarText(id))}\"`}${label === null ? \"\" : ` label=\"${escapeXmlAttribute(scalarText(label))}\"`} source=\"${escapeXmlAttribute(idText(snapshot.ids.idOf(u)))}\" target=\"${escapeXmlAttribute(idText(snapshot.ids.idOf(v)))}\" cy:directed=\"${directed ? \"1\" : \"0\"}\"${weight === null ? \"\" : ` weight=\"${weight}\"`}${xmlAttributesOf(plan.edges, e)}>\\n`;\n        yield* attsOf(plan.edges, e, first, plan, \"        \");\n        yield* graphicsOf(cellOf(graphicsCol, e) as Record<string, unknown> | null, [], \"        \");\n        yield \"    </edge>\\n\";\n        first = false;\n    }\n}\n\n/**\n * Resolve the format-specific options.\n * @param options - the caller's options\n * @returns the cytoscapeEscapes flag\n */\nfunction resolveEscapes(options: XgmmlExportOptions | undefined): boolean {\n    const value = options?.cytoscapeEscapes ?? false;\n    if (typeof value !== \"boolean\") {\n        throw new GraphFormatError(\"E_UNSUPPORTED\", \"option cytoscapeEscapes must be a boolean\", {\n            option: \"cytoscapeEscapes\",\n            found: typeof value,\n        });\n    }\n    return value;\n}\n\n/**\n * The plan of one export call; throws the E_ conditions before anything is written.\n * @param snapshot - the snapshot\n * @param options - the options\n * @returns the plan\n */\nfunction planFor(snapshot: GraphSnapshot, options: (XgmmlExportOptions & CommonExportOptions) | undefined): Plan {\n    const plan = planExport(snapshot, resolveExportOptions(options), resolveEscapes(options));\n    const illegal = plan.notes.find((n) => n.code === XGMML_LOSS.XML_ILLEGAL_CHAR);\n    if (illegal !== undefined) {\n        throw new GraphFormatError(\"E_COLUMN_TYPE\", illegal.message, { code: illegal.code, column: illegal.column });\n    }\n    return plan;\n}\n\n/** The XGMML exporter. */\nexport const xgmmlExporter: GraphExporter<XgmmlExportOptions> = Object.freeze({\n    format: FORMAT,\n    capabilities: CAPABILITIES,\n    check: (snapshot: GraphSnapshot, options?: XgmmlExportOptions & CommonExportOptions): readonly LossNote[] =>\n        Object.freeze(planExport(snapshot, resolveExportOptions(options), resolveEscapes(options)).notes),\n    export: (snapshot: GraphSnapshot, options?: XgmmlExportOptions & CommonExportOptions): AsyncIterable<Uint8Array> =>\n        encodeChunks(write(snapshot, options)),\n    exportToString: (snapshot: GraphSnapshot, options?: XgmmlExportOptions & CommonExportOptions): Promise<string> =>\n        joinText(write(snapshot, 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package/dist/chunks/{importer-BNFuV1-K.js → importer-BWY2FFc5.js}

@@ -1,10 +1,11 @@
 import { GraphFormatError, INVALID_INDEX } from "@graphty/graph-format";
 import { c as childrenCsr } from "./children-CL3Cy0ez.js";
-import { aB as resolveExportOptions, ax as pairFolding, am as canonicalId, N as MIXED_DIRECTION_CODE, j as DIRECTION_FORCED_CODE, k as DIRECTION_REFUSED_CODE, a2 as SINK_OPTION_CODE, u as ID_MERGED_CODE, U as OPTION_IGNORED_CODE, C as COLUMN_RENAMED_CODE, a1 as ROLE_TAKEN_CODE, O as MULTIPLE_GRAPHS_CODE, af as UNKNOWN_ENCODING_CODE, r as ENCODING_FALLBACK_CODE, y as INVALID_ENCODING_CODE, z as INVALID_UTF8_CODE, q as EMPTY_INPUT_CODE, a8 as SYNTAX_CODE, aC as resolveImportOptions, I as ImportReportBuilder, aA as reportUnusedOptions, ay as readText, az as reportSinkOptions, t as throwIfAborted, F as IdCoercer, p as DirectionResolver, ar as declareResolved } from "./report-BcWboivV.js";
-import { b as quoteDotId, c as isWritableDotText } from "./escape-CWExcecC.js";
-import { L as LOSS, j as joinText, e as encodeChunks, a as checkCapabilities, c as capabilities, g as countMixedEdges, s as sanitizeIds } from "./writer-DQiKgQJc.js";
-import { e as explicitWeights, a as formatF32, b as formatF64, f as formatDecimal, d as formatInteger, p as parseWeightText } from "./weights-CwISIpCP.js";
+import { V as resolveExportOptions, X as pairFolding, ax as canonicalId, af as MIXED_DIRECTION_CODE, D as DIRECTION_FORCED_CODE, a as DIRECTION_REFUSED_CODE, S as SINK_OPTION_CODE, I as ID_MERGED_CODE, O as OPTION_IGNORED_CODE, C as COLUMN_RENAMED_CODE, R as ROLE_TAKEN_CODE, M as MULTIPLE_GRAPHS_CODE, q as UNKNOWN_ENCODING_CODE, E as ENCODING_FALLBACK_CODE, r as INVALID_ENCODING_CODE, s as INVALID_UTF8_CODE, u as EMPTY_INPUT_CODE, t as SYNTAX_CODE, v as resolveImportOptions, w as ImportReportBuilder, z as reportUnusedOptions, aG as readText, F as reportSinkOptions, y as throwIfAborted, K as IdCoercer, J as DirectionResolver, L as declareResolved } from "./report-B1z4WT9e.js";
+import { c as quoteDotId, d as isWritableDotText } from "./escape-B-tkk_Cl.js";
+import { L as LOSS, a as checkCapabilities, c as capabilities, d as countMixedEdges, s as sanitizeIds } from "./export-Bh60Dv-n.js";
+import { e as explicitWeights, f as formatF32, a as formatF64, b as formatDecimal, d as formatInteger, p as parseWeightText } from "./weights-Dzba96G3.js";
 import { i as inferTextDtype, W as WIDENING_UNSUPPORTED_CODE, p as parseTextCell, T as TextCellWriter } from "./text-Dr0Ifpag.js";
+import { j as joinText, e as encodeChunks } from "./writer-C7flM-Ih.js";
 const DOT_FORMAT = "dot";
 const DOT_ORIGIN = Object.freeze({ format: DOT_FORMAT });
 const CLUSTER_COLUMN = "graphty.cluster";
@@ -36,7 +37,9 @@ const DOT_LOSS = Object.freeze({
   /** A declared column whose every row is unset is not written (DOT writes cells, never declarations). */
   EMPTY_COLUMN_DROPPED: LOSS.EMPTY_COLUMN,
   /** A role-less column named `label` reads back with the label role. */
-  ROLE_ASSUMED: LOSS.ROLE_ASSUMED
+  ROLE_ASSUMED: LOSS.ROLE_ASSUMED,
+  /** A parent that is a plain node is written as a node and a cluster of one name; it reads back marked as a cluster. */
+  CLUSTER_MARKED: "W_DOT_CLUSTER_MARKED"
 });
 const KEPT_ROLES = /* @__PURE__ */ new Set(["label", "id", "sourcePort", "targetPort", "parent"]);
 const ROLE_NAMES = Object.freeze({
@@ -357,6 +360,21 @@ class ExportPlan {
         }
       }
     }
+    let unmarked = 0;
+    for (let i = 0; i < snapshot.nodeCount; i++) {
+      const marked = this.cluster !== null && this.cluster.isSet(i) && this.cluster.value(i) === true;
+      if (!marked && this.children.childrenOf(i).length > 0) {
+        unmarked++;
+      }
+    }
+    if (unmarked > 0) {
+      note(
+        DOT_LOSS.CLUSTER_MARKED,
+        `${unmarked} parent node(s) are written as a node and a cluster of the same name and read back with "${CLUSTER_COLUMN}" true`,
+        CLUSTER_COLUMN,
+        unmarked
+      );
+    }
     const mutual = this.folding.mutualCount;
     if (mutual > 0) {
       note(
@@ -2218,7 +2236,10 @@ class DotParser {
       if (attribute.name === LABEL_ATTRIBUTE) {
         this.sink.setGraphValue(attribute.name, attribute.value, { dtype: "string", origin: DOT_ORIGIN });
       } else {
-        this.sink.setGraphValue(attribute.name, parseTextCell(attribute.value), { origin: DOT_ORIGIN });
+        this.sink.setGraphValue(attribute.name, parseTextCell(attribute.value), {
+          dtype: inferTextDtype(attribute.value),
+          origin: DOT_ORIGIN
+        });
       }
     } catch (err) {
       this.report.recordError(err, { line: attribute.line, element: attribute.name });
@@ -2443,4 +2464,4 @@ export {
   dotImporter as b,
   dotExporter as d
 };
-//# sourceMappingURL=importer-BNFuV1-K.js.map
+//# sourceMappingURL=importer-BWY2FFc5.js.map