@graphty/graph-io 0.3.19 → 0.3.21

package/dist/src/formats/xgmml/document.d.ts

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+/**
+ * The XGMML document model: one pass of the shared XML tokenizer turns an XGMML document into
+ * plain records (graphs, nodes, edges, atts, graphics) that keep everything the file says, with
+ * forward references (`xlink:href`, an edge before its nodes) left as ids. The importer
+ * (importer.ts) resolves the records into a sink once the outermost `</graph>` has closed, as
+ * Cytoscape does, and the `.cys` importer reuses the same records for the network and view files
+ * of a session.
+ *
+ * It recognises the five shapes of `research-xgmml.md` section 2: the 1.0 draft, the Cytoscape
+ * 2.x export and session, the 3.x export, the 3.x session network file (root `cy:registered="0"`)
+ * and the 3.x session view file (root `cy:view="1"`).
+ */
+import { type ImportReportBuilder } from "../../common/report.js";
+import { type XmlHandler } from "../../common/xml.js";
+/** One `<att>` and what it holds. */
+export interface AttRec {
+    /** The `name` (else `label`) attribute, or null. */
+    name: string | null;
+    /** The XGMML `type` as written, or null. */
+    readonly type: string | null;
+    /** Cytoscape's `cy:type`, or null. */
+    readonly cyType: string | null;
+    /** Cytoscape's `cy:elementType` of a list, or null. */
+    readonly elementType: string | null;
+    /** The `value` attribute, or null when absent. */
+    readonly value: string | null;
+    /** `cy:hidden` is 1, true or yes. */
+    readonly hidden: boolean;
+    /** `cy:equation` is 1, true or yes: the value is a formula. */
+    readonly equation: boolean;
+    /** The child atts (list items, record fields, graphics properties). */
+    readonly children: AttRec[];
+    /** The XML attributes besides the ones above (a 2.x bend handle's `x` and `y`). */
+    readonly extra: Record<string, string>;
+    /** Foreign XML inside the att (RDF), serialized, or null. */
+    xml: string | null;
+    /** Whether the att held a `<graph>`. */
+    hasGraph: boolean;
+    /** Non-whitespace character data inside the att. */
+    text: string;
+    /** The line of the `<att`. */
+    readonly line: number;
+    /** The table namespace of a `.cys` column, or null for an att of the document. */
+    readonly namespace?: string | null | undefined;
+}
+/** A `<node>`. */
+export interface NodeRec {
+    readonly kind: "node";
+    /** The id (the label when the id is missing), or null for an `xlink:href` reference. */
+    readonly id: string | null;
+    /** The `xlink:href` of a reference to a node declared elsewhere, or null. */
+    readonly href: string | null;
+    /** The `label` attribute (else `name`), or null. */
+    readonly label: string | null;
+    /** The `name` attribute when a label is also given, or null. */
+    readonly name: string | null;
+    /** The other XML attributes, as written. */
+    readonly xmlAttrs: [string, string][];
+    /** The atts, in document order. */
+    readonly atts: AttRec[];
+    /** The graphics values besides x, y and z, or null without `<graphics>`. */
+    graphics: Record<string, unknown> | null;
+    /** The x, y and z texts of the graphics (or its `<center>`), or null. */
+    x: string | null;
+    y: string | null;
+    z: string | null;
+    /** The graphs nested in the node's atts. */
+    readonly nested: GraphRec[];
+    /** The graph that declares (or references) the node. */
+    readonly graph: GraphRec;
+    /** The line of the `<node`. */
+    readonly line: number;
+    /** A session view's `cy:nodeId`, or null. */
+    readonly viewId: string | null;
+}
+/** An `<edge>`. */
+export interface EdgeRec {
+    readonly kind: "edge";
+    /** The id attribute, or null. */
+    readonly id: string | null;
+    /** The `xlink:href` of a reference to an edge declared elsewhere, or null. */
+    readonly href: string | null;
+    /** The source and target texts, or null when missing. */
+    readonly source: string | null;
+    readonly target: string | null;
+    /** The label attribute, or null. */
+    readonly label: string | null;
+    /** The `name` attribute, or null. */
+    readonly name: string | null;
+    /** The `weight` attribute, or null. */
+    readonly weight: string | null;
+    /** The `cy:directed` attribute, or null. */
+    readonly directed: string | null;
+    /** The other XML attributes, as written. */
+    readonly xmlAttrs: [string, string][];
+    /** The atts, in document order. */
+    readonly atts: AttRec[];
+    /** The graphics values, or null. */
+    graphics: Record<string, unknown> | null;
+    /** The graph that declares (or references) the edge. */
+    readonly graph: GraphRec;
+    /** The line of the `<edge`. */
+    readonly line: number;
+    /** A session view's `cy:edgeId`, or null. */
+    readonly viewId: string | null;
+}
+/** A `<graph>`: the root, a subnetwork, a group or a nested-network pointer. */
+export interface GraphRec {
+    /** The id attribute, or null. */
+    readonly id: string | null;
+    /** The label attribute, or null. */
+    readonly label: string | null;
+    /** The `xlink:href` of a pointer to a graph written elsewhere, or null. */
+    readonly href: string | null;
+    /** `cy:registered` as written, or null. */
+    readonly registered: string | null;
+    /** Every XML attribute, as written. */
+    readonly attrs: ReadonlyMap<string, string>;
+    /** The graph-level atts. */
+    readonly atts: AttRec[];
+    /** The graph's `<graphics>` values, or null. */
+    graphics: Record<string, unknown> | null;
+    /** The node whose att holds this graph, or null. */
+    readonly owner: NodeRec | null;
+    /** The graph this one is nested in, or null for the root. */
+    readonly parent: GraphRec | null;
+    /** The nodes and edges directly in this graph (declared or referenced), in document order. */
+    readonly members: (NodeRec | EdgeRec)[];
+    /** The graphs held by this graph's own atts (subnetworks of the root). */
+    readonly subgraphs: GraphRec[];
+    /** The line of the `<graph`. */
+    readonly line: number;
+}
+/** A parsed document. */
+export interface XgmmlDocument {
+    /** The root graph. */
+    readonly root: GraphRec;
+    /** Every declared node (not references), in document order. */
+    readonly nodes: NodeRec[];
+    /** Every declared edge, in document order. */
+    readonly edges: EdgeRec[];
+    /** Every graph, root first. */
+    readonly graphs: GraphRec[];
+    /** The `cy` prefix is bound, or a `cy:` attribute is used: Cytoscape wrote the file. */
+    readonly cytoscape: boolean;
+    /** The root is in the XGMML namespace (default or prefixed). */
+    readonly xgmmlNamespace: boolean;
+    /** The RDF network metadata fields (`dc:title`, ...) by local name. */
+    readonly rdf: Record<string, string>;
+    /** The serialized `networkMetadata` RDF, or null. */
+    readonly rdfXml: string | null;
+}
+/**
+ * Whether a Cytoscape flag text is true.
+ * @param text - the text, or undefined
+ * @returns true for 1, true or yes in any case
+ */
+export declare function isCyTrue(text: string | null | undefined): boolean;
+/**
+ * The tokenizer handler that builds an XgmmlDocument.
+ */
+export declare class XgmmlParser implements XmlHandler {
+    private readonly report;
+    private readonly frames;
+    private readonly xlinkPrefixes;
+    private rootGraph;
+    private readonly nodes;
+    private readonly edges;
+    private readonly graphs;
+    private cytoscape;
+    private xgmmlNamespace;
+    /** The prefix of the root element (`xgmml` in `<xgmml:graph>`), or null when it has none. */
+    private rootPrefix;
+    private readonly rdf;
+    private rdfXml;
+    /**
+     * Create a parser.
+     * @param report - the report issues are recorded in
+     */
+    constructor(report: ImportReportBuilder);
+    /**
+     * The parsed document.
+     * @returns the document; E_NO_GRAPH (fatal) when no root graph was read
+     */
+    document(): XgmmlDocument;
+    /**
+     * An element starts.
+     * @param rawName - the element name as written
+     * @param rawAttrs - its attributes
+     * @param line - the line
+     */
+    start(rawName: string, rawAttrs: ReadonlyMap<string, string>, line: number): void;
+    /**
+     * An element ends.
+     * @param name - the element name
+     * @param _line - the line
+     */
+    end(name: string, _line: number): void;
+    /**
+     * Character data.
+     * @param text - the text
+     * @param line - the line
+     */
+    text(text: string, line: number): void;
+    /**
+     * The XML attribute map with every XLink prefix written `xlink:`.
+     * @param attrs - the attributes as written
+     * @returns the normalised map
+     */
+    private normalise;
+    /**
+     * The root element: a `<graph>`, else the document is not XGMML.
+     * @param rawName - the name as written
+     * @param rawAttrs - its attributes
+     * @param line - the line
+     */
+    private startRoot;
+    /**
+     * A graph record, registered in the document.
+     * @param attrs - its attributes
+     * @param line - the line
+     * @param owner - the node whose att holds it, or null
+     * @param parent - the graph it is nested in, or null
+     * @returns the record
+     */
+    private newGraph;
+    /**
+     * A child of `<graph>`.
+     * @param graph - the graph
+     * @param rawName - the name as written
+     * @param name - its local name
+     * @param attrs - its attributes
+     * @param line - the line
+     */
+    private startInGraph;
+    /**
+     * A child of `<node>` or `<edge>`.
+     * @param element - the node or edge
+     * @param rawName - the name as written
+     * @param name - its local name
+     * @param attrs - its attributes
+     * @param line - the line
+     */
+    private startInElement;
+    /**
+     * A child of `<att>`: a child att, a nested graph, or foreign XML.
+     * @param frame - the att frame
+     * @param rawName - the name as written
+     * @param name - its local name
+     * @param attrs - its attributes
+     * @param line - the line
+     */
+    private startInAtt;
+    /**
+     * Whether an element name inside an att is XGMML's own (unprefixed, or with the root's prefix,
+     * as in a document whose root is `<xgmml:graph>`) rather than foreign XML such as `rdf:RDF`.
+     * @param rawName - the name as written
+     * @returns true for an XGMML element name
+     */
+    private isXgmmlName;
+    /**
+     * A `<graph>` inside an `<att>`: a subnetwork of the root, a group or nested-network pointer
+     * of a node, or (in an edge) a graph with no model.
+     * @param frame - the att frame
+     * @param attrs - the graph's attributes
+     * @param line - the line
+     */
+    private beginNestedGraph;
+    /**
+     * The innermost node, edge or graph frame below the open atts.
+     * @returns the frame, or null
+     */
+    private attHolder;
+    /**
+     * Report an element XGMML does not define here and skip its subtree.
+     * @param rawName - the name as written
+     * @param line - the line
+     */
+    private unknownElement;
+    /**
+     * Open a `<node>`.
+     * @param graph - the graph it is in
+     * @param attrs - its attributes
+     * @param line - the line
+     */
+    private beginNode;
+    /**
+     * Open an `<edge>`.
+     * @param graph - the graph it is in
+     * @param attrs - its attributes
+     * @param line - the line
+     */
+    private beginEdge;
+    /**
+     * An att record from its XML attributes.
+     * @param attrs - the attributes
+     * @param line - the line
+     * @returns the record
+     */
+    private newAtt;
+    /**
+     * Open an `<att>`.
+     * @param att - the record
+     * @param _attrs - its attributes
+     * @param owner - what holds it
+     */
+    private beginAtt;
+    /**
+     * Serialize one start tag of foreign XML into the capturing att.
+     * @param frame - the capture frame
+     * @param rawName - the name as written
+     * @param attrs - its attributes
+     */
+    private capture;
+    /** The local name of the RDF element whose text is being read, or null. */
+    private rdfElement;
+    /**
+     * Keep the text of an RDF metadata field.
+     * @param text - the text
+     */
+    private captureRdfText;
+    /**
+     * Open a `<graphics>`: x, y and z (draft and Cytoscape) are read as coordinates; every other
+     * attribute is kept as written, merged key by key with an earlier `<graphics>`.
+     * @param target - the node, edge or graph
+     * @param attrs - its attributes
+     */
+    private beginGraphics;
+    /**
+     * A child of `<graphics>`: a visual-property att, a `<center>` or a `<Line>`.
+     * @param target - the graphics target
+     * @param rawName - the name as written
+     * @param name - its local name
+     * @param attrs - its attributes
+     * @param line - the line
+     */
+    private startInGraphics;
+    /**
+     * Keep a visual-property att of a `<graphics>` in its record, as written. A session view's
+     * `<att name="z">` repeats z and is read as z when the attributes gave none.
+     * @param target - the graphics target
+     * @param att - the att
+     */
+    private graphicsAtt;
+}
+/**
+ * Whether an att's children are list items rather than named fields: they have no names, repeat
+ * the parent's name (Cytoscape 3 lists), or are several that share one name (2.x bend handles).
+ * @param att - the att
+ * @returns true for a list
+ */
+export declare function isListLike(att: AttRec): boolean;
+/**
+ * A graphics att as plain data, values as written: an att with children is an array when they
+ * are list items (isListLike), else a record by name; a childless att is its value,
+ * else its other XML attributes (a 2.x bend handle's x and y), else null.
+ * @param att - the att
+ * @returns the value
+ */
+export declare function attJson(att: AttRec): unknown;
+//# sourceMappingURL=document.d.ts.map

package/dist/src/formats/xgmml/document.d.ts.map

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