@goondocks/myco 0.6.4 → 0.9.0

package/dist/{chunk-Z74SDEKE.js → chunk-KB4DGYIY.js}

@@ -1,9 +1,21 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  LmStudioBackend,
+  OllamaBackend
+} from "./chunk-UBZPD4HN.js";
+import {
+  closeDatabase,
+  initDatabase,
+  vaultDbPath
+} from "./chunk-MYX5NCRH.js";
+import {
+  DaemonClient
+} from "./chunk-TRUJLI6K.js";
 import {
   PROMPT_PREVIEW_CHARS
-} from "./chunk-J4D4CROB.js";
+} from "./chunk-5VZ52A4T.js";
 
-// src/agents/adapter.ts
+// src/symbionts/adapter.ts
 import fs from "fs";
 import path from "path";
 function findJsonlInSubdirs(baseDir, sessionId) {
@@ -66,6 +78,7 @@ function parseJsonlTurns(content, opts) {
     const role = entry[opts.roleField];
     const timestamp = opts.extractTimestamp ? entry.timestamp ?? "" : "";
     if (role === "user") {
+      if (entry.isMeta === true) continue;
       const msg = entry.message;
       const blocks = Array.isArray(msg?.content) ? msg.content : [];
       const hasText = blocks.some((b) => b.type === "text" && b.text?.trim());
@@ -90,7 +103,7 @@ function parseJsonlTurns(content, opts) {
   return turns;
 }
 
-// src/agents/claude-code.ts
+// src/symbionts/claude-code.ts
 import fs2 from "fs";
 import path2 from "path";
 import os from "os";
@@ -130,7 +143,7 @@ var claudeCodeAdapter = {
   }
 };
 
-// src/agents/cursor.ts
+// src/symbionts/cursor.ts
 import fs3 from "fs";
 import path3 from "path";
 import os2 from "os";
@@ -265,13 +278,13 @@ function parseCursorText(content) {
   return turns;
 }
 
-// src/agents/registry.ts
+// src/symbionts/registry.ts
 import fs4 from "fs";
 var ALL_ADAPTERS = [
   claudeCodeAdapter,
   cursorAdapter
 ];
-var AgentRegistry = class {
+var SymbiontRegistry = class {
   adapters;
   constructor(additionalAdapters = []) {
     this.adapters = [...ALL_ADAPTERS, ...additionalAdapters];
@@ -303,7 +316,7 @@ var AgentRegistry = class {
   getAdapter(name) {
     return this.adapters.find((a) => a.name === name);
   }
-  /** Detect which agent is currently active based on environment variables */
+  /** Detect which symbiont is currently active based on environment variables */
   detectActiveAgent() {
     for (const adapter of this.adapters) {
       if (process.env[adapter.pluginRootEnvVar]) {
@@ -345,10 +358,79 @@ var AgentRegistry = class {
   }
 };
 
+// src/cli/shared.ts
+import fs5 from "fs";
+import path4 from "path";
+import os3 from "os";
+function initVaultDb(vaultDir) {
+  initDatabase(vaultDbPath(vaultDir));
+  return closeDatabase;
+}
+async function connectToDaemon(vaultDir) {
+  const client = new DaemonClient(vaultDir);
+  const healthy = await client.ensureRunning();
+  if (!healthy) {
+    console.error("Failed to connect to daemon");
+    process.exit(1);
+  }
+  return client;
+}
+function loadEnv() {
+  const envPath = path4.resolve(process.cwd(), ".env");
+  if (!fs5.existsSync(envPath)) return;
+  for (const line of fs5.readFileSync(envPath, "utf-8").split("\n")) {
+    const match = line.match(/^\s*([^#=]+?)\s*=\s*(.*?)\s*$/);
+    if (match && !process.env[match[1]]) {
+      process.env[match[1]] = match[2];
+    }
+  }
+}
+function isProcessAlive(pid) {
+  try {
+    process.kill(pid, 0);
+    return true;
+  } catch {
+    return false;
+  }
+}
+var PROVIDER_DEFAULTS = {
+  ollama: { base_url: OllamaBackend.DEFAULT_BASE_URL },
+  "lm-studio": { base_url: LmStudioBackend.DEFAULT_BASE_URL }
+};
+var VAULT_GITIGNORE = `# SQLite database
+myco.db
+myco.db-wal
+myco.db-shm
+
+# Daemon state \u2014 per-machine, ephemeral
+daemon.json
+buffer/
+logs/
+
+# Secrets \u2014 API keys for cloud providers
+secrets.env
+
+# Binary attachments \u2014 screenshots captured from transcripts
+attachments/
+`;
+function collapseHomePath(absPath) {
+  const home = os3.homedir();
+  if (absPath.startsWith(home + path4.sep) || absPath === home) {
+    return "~" + absPath.slice(home.length);
+  }
+  return absPath;
+}
+
 export {
   createPerProjectAdapter,
   extensionForMimeType,
   claudeCodeAdapter,
-  AgentRegistry
+  SymbiontRegistry,
+  initVaultDb,
+  connectToDaemon,
+  loadEnv,
+  isProcessAlive,
+  VAULT_GITIGNORE,
+  collapseHomePath
 };
-//# sourceMappingURL=chunk-Z74SDEKE.js.map
+//# sourceMappingURL=chunk-KB4DGYIY.js.map

package/dist/chunk-KB4DGYIY.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/symbionts/adapter.ts","../src/symbionts/claude-code.ts","../src/symbionts/cursor.ts","../src/symbionts/registry.ts","../src/cli/shared.ts"],"sourcesContent":["/**\n * Symbiont adapter interface — declares what each coding agent provides to Myco.\n *\n * Each supported symbiont (Claude Code, Cursor, Cline, etc.) has an adapter that\n * tells Myco where to find transcripts, how to parse them, and what capabilities\n * the agent supports. The daemon uses these adapters at runtime to read the\n * authoritative conversation record.\n */\nimport fs from 'node:fs';\nimport path from 'node:path';\n\n/** An image attached to a conversation turn */\nexport interface TranscriptImage {\n  /** Base64-encoded image data */\n  data: string;\n  /** MIME type (e.g., image/png) */\n  mediaType: string;\n}\n\n/** A single conversation turn extracted from an agent's transcript */\nexport interface TranscriptTurn {\n  prompt: string;\n  toolCount: number;\n  /** Per-tool call counts (e.g., { Read: 5, Edit: 3 }). Populated from buffer events. */\n  toolBreakdown?: Record<string, number>;\n  /** Deduplicated file paths touched in this turn. Populated from buffer events. */\n  files?: string[];\n  aiResponse?: string;\n  timestamp: string;\n  /** Images attached to this turn's user prompt */\n  images?: TranscriptImage[];\n}\n\n/**\n * Maps agent-specific hook field names to normalized names.\n * Each agent's hook system uses different field names for the same data.\n */\nexport interface HookFieldNames {\n  /** Field name for the transcript file path (e.g., 'transcript_path') */\n  transcriptPath: string;\n  /** Field name for the last AI response text (e.g., 'last_assistant_message') */\n  lastResponse: string;\n  /** Field name for the session ID (e.g., 'session_id') */\n  sessionId: string;\n}\n\nexport interface SymbiontAdapter {\n  /** Agent identifier (matches plugin directory names) */\n  readonly name: string;\n  /** Human-readable display name */\n  readonly displayName: string;\n  /** Environment variable for the plugin root directory */\n  readonly pluginRootEnvVar: string;\n  /** Maps agent-specific hook body field names to normalized names */\n  readonly hookFields: HookFieldNames;\n\n  /**\n   * Find the transcript file for a given session ID.\n   * Returns the absolute path if found, null otherwise.\n   */\n  findTranscript(sessionId: string): string | null;\n\n  /**\n   * Parse a transcript file's content into normalized turns.\n   * Each adapter handles its agent's specific format.\n   */\n  parseTurns(content: string): TranscriptTurn[];\n\n  /**\n   * Write MYCO_VAULT_DIR into this agent's project-level config file.\n   * Called during init when the vault is outside the project root.\n   * Returns true if the config was written, false if not applicable.\n   */\n  configureVaultEnv(projectRoot: string, vaultDir: string): boolean;\n}\n\n/**\n * Scan subdirectories of baseDir for a JSONL transcript file matching sessionId.\n * Shared by claude-code, cursor, custom adapters, and tests.\n */\nexport function findJsonlInSubdirs(baseDir: string, sessionId: string): string | null {\n  try {\n    for (const entry of fs.readdirSync(baseDir, { withFileTypes: true })) {\n      if (!entry.isDirectory()) continue;\n      const candidate = path.join(baseDir, entry.name, `${sessionId}.jsonl`);\n      try {\n        fs.accessSync(candidate);\n        return candidate;\n      } catch { /* not here */ }\n    }\n  } catch { /* baseDir doesn't exist or unreadable */ }\n  return null;\n}\n\n/**\n * Factory for creating simple per-project adapters from a base directory.\n * Used for user-configured transcript_paths and testing.\n */\nexport function createPerProjectAdapter(\n  baseDir: string,\n  parseTurns: SymbiontAdapter['parseTurns'],\n  name?: string,\n): SymbiontAdapter {\n  return {\n    name: name ?? `custom:${path.basename(baseDir)}`,\n    displayName: `Custom (${baseDir})`,\n    pluginRootEnvVar: '',\n    hookFields: { transcriptPath: 'transcript_path', lastResponse: 'last_assistant_message', sessionId: 'session_id' },\n    findTranscript: (sessionId) => findJsonlInSubdirs(baseDir, sessionId),\n    parseTurns,\n    configureVaultEnv: () => false,\n  };\n}\n\n/** Map MIME type to file extension */\nconst MIME_TO_EXT: Record<string, string> = {\n  'image/jpeg': 'jpg',\n  'image/gif': 'gif',\n  'image/webp': 'webp',\n  'image/png': 'png',\n};\n\nexport function extensionForMimeType(mimeType: string): string {\n  return MIME_TO_EXT[mimeType] ?? 'png';\n}\n\n/** Map file extension to MIME type */\nconst EXT_TO_MIME: Record<string, string> = {\n  '.jpg': 'image/jpeg',\n  '.jpeg': 'image/jpeg',\n  '.gif': 'image/gif',\n  '.webp': 'image/webp',\n  '.png': 'image/png',\n};\n\nexport function mimeTypeForExtension(ext: string): string {\n  return EXT_TO_MIME[ext.toLowerCase()] ?? 'image/png';\n}\n\nimport { PROMPT_PREVIEW_CHARS } from '../constants.js';\n\n/** Claude Code injects [Image: source: /path] text alongside base64 image blocks. Strip these since the actual images are captured as attachments. */\nconst IMAGE_TEXT_REF_PATTERN = /\\[Image: source: [^\\]]+\\]\\n*/g;\n\nexport interface ParseJsonlOptions {\n  /** Field name containing the message role ('type' for Claude Code, 'role' for Cursor) */\n  roleField: 'type' | 'role';\n  /** Whether entries have a timestamp field to extract */\n  extractTimestamp: boolean;\n  /** Whether to check for text-only user messages (Claude Code has tool_result user messages to skip) */\n  skipToolResultUsers: boolean;\n  /** Whether to strip [Image: source: ...] text references from prompts (Claude Code-specific) */\n  stripImageTextRefs: boolean;\n}\n\n/**\n * Shared JSONL transcript parser — used by both Claude Code and Cursor adapters.\n * Handles user/assistant role detection, text/image extraction, and tool counting.\n */\nexport function parseJsonlTurns(content: string, opts: ParseJsonlOptions): TranscriptTurn[] {\n  const lines = content.split('\\n').filter(Boolean);\n  const turns: TranscriptTurn[] = [];\n  let current: TranscriptTurn | null = null;\n\n  for (const line of lines) {\n    let entry: Record<string, unknown>;\n    try { entry = JSON.parse(line); } catch { continue; }\n\n    const role = entry[opts.roleField] as string;\n    const timestamp = opts.extractTimestamp ? (entry.timestamp as string ?? '') : '';\n\n    if (role === 'user') {\n      // Skip meta messages (skill injections, deprecation notices, etc.) — they are\n      // not real user prompts and should not appear as turns or influence the title.\n      if (entry.isMeta === true) continue;\n\n      const msg = entry.message as { content?: Array<{ type: string; text?: string; source?: { type?: string; data?: string; media_type?: string } }> } | undefined;\n      const blocks = Array.isArray(msg?.content) ? msg!.content : [];\n      const hasText = blocks.some((b) => b.type === 'text' && b.text?.trim());\n\n      if (!hasText && opts.skipToolResultUsers) continue;\n      if (!hasText) continue;\n\n      if (current) turns.push(current);\n\n      const rawPrompt = blocks\n        .filter((b) => b.type === 'text' && b.text)\n        .map((b) => b.text!)\n        .join('\\n');\n\n      const promptText = (opts.stripImageTextRefs ? rawPrompt.replace(IMAGE_TEXT_REF_PATTERN, '') : rawPrompt)\n        .trim()\n        .slice(0, PROMPT_PREVIEW_CHARS);\n\n      const images: TranscriptImage[] = blocks\n        .filter((b) => b.type === 'image' && b.source?.type === 'base64' && b.source.data)\n        .map((b) => ({ data: b.source!.data!, mediaType: b.source!.media_type ?? 'image/png' }));\n\n      current = { prompt: promptText, toolCount: 0, timestamp, ...(images.length > 0 ? { images } : {}) };\n    } else if (role === 'assistant' && current) {\n      const msg = entry.message as { content?: Array<{ type: string; text?: string }> } | undefined;\n      if (Array.isArray(msg?.content)) {\n        const textParts = msg!.content.filter((b) => b.type === 'text' && b.text).map((b) => b.text!);\n        const text = textParts.join('\\n').trim();\n        if (text) current.aiResponse = text;\n        current.toolCount += msg!.content.filter((b) => b.type === 'tool_use').length;\n      }\n    }\n  }\n\n  if (current) turns.push(current);\n  return turns;\n}\n","import type { SymbiontAdapter } from './adapter.js';\nimport { findJsonlInSubdirs, parseJsonlTurns } from './adapter.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\n\nconst TRANSCRIPT_BASE = path.join(os.homedir(), '.claude', 'projects');\n\nexport const claudeCodeAdapter: SymbiontAdapter = {\n  name: 'claude-code',\n  displayName: 'Claude Code',\n  pluginRootEnvVar: 'CLAUDE_PLUGIN_ROOT',\n  hookFields: {\n    transcriptPath: 'transcript_path',\n    lastResponse: 'last_assistant_message',\n    sessionId: 'session_id',\n  },\n\n  findTranscript: (sessionId) => findJsonlInSubdirs(TRANSCRIPT_BASE, sessionId),\n\n  parseTurns: (content) => parseJsonlTurns(content, {\n    roleField: 'type',\n    extractTimestamp: true,\n    skipToolResultUsers: true,\n    stripImageTextRefs: true,\n  }),\n\n  configureVaultEnv: (projectRoot, vaultDir) => {\n    const settingsDir = path.join(projectRoot, '.claude');\n    if (!fs.existsSync(settingsDir)) return false;\n\n    // Write to settings.json — Claude Code only injects env vars from this\n    // file into hook processes (settings.user.json env is not propagated).\n    // The caller passes the collapsed ~/... form so the committed path\n    // doesn't leak the user's home directory.\n    const settingsPath = path.join(settingsDir, 'settings.json');\n    let settings: Record<string, unknown> = {};\n    if (fs.existsSync(settingsPath)) {\n      try { settings = JSON.parse(fs.readFileSync(settingsPath, 'utf-8')); } catch { /* fresh */ }\n    }\n    const env = (settings.env ?? {}) as Record<string, string>;\n    env.MYCO_VAULT_DIR = vaultDir;\n    settings.env = env;\n    fs.writeFileSync(settingsPath, JSON.stringify(settings, null, 2) + '\\n', 'utf-8');\n    return true;\n  },\n};\n","import type { SymbiontAdapter } from './adapter.js';\nimport type { TranscriptTurn, TranscriptImage } from './adapter.js';\nimport { mimeTypeForExtension, parseJsonlTurns } from './adapter.js';\nimport { PROMPT_PREVIEW_CHARS } from '../constants.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\n\n/**\n * Cursor stores conversation transcripts in:\n *   ~/.cursor/projects/<project-path>/agent-transcripts/<session-id>.txt\n *\n * Images are saved as files in:\n *   ~/.cursor/projects/<project-path>/assets/<filename>.png\n *\n * Transcript format is plain text with role markers on their own line:\n *   user:         — human prompt (may contain <image_files> and <user_query> tags)\n *   assistant:    — assistant response (may contain [Tool call] and [Thinking] blocks)\n */\n\nconst USER_MARKER = '\\nuser:\\n';\nconst ASSISTANT_MARKER = '\\nassistant:\\n';\nconst TOOL_CALL_MARKER = '[Tool call]';\nconst TOOL_RESULT_MARKER = '[Tool result]';\nconst THINKING_MARKER = '[Thinking]';\n\nfunction getCursorProjectsBase(): string {\n  return path.join(os.homedir(), '.cursor', 'projects');\n}\n\nconst CURSOR_PROJECTS = getCursorProjectsBase();\n\nexport const cursorAdapter: SymbiontAdapter = {\n  name: 'cursor',\n  displayName: 'Cursor',\n  pluginRootEnvVar: 'CURSOR_PLUGIN_ROOT',\n  hookFields: {\n    transcriptPath: 'transcript_path',\n    lastResponse: 'last_assistant_message',\n    sessionId: 'conversation_id',\n  },\n\n  findTranscript(sessionId: string): string | null {\n    try {\n      for (const project of fs.readdirSync(CURSOR_PROJECTS, { withFileTypes: true })) {\n        if (!project.isDirectory()) continue;\n        const transcriptsDir = path.join(CURSOR_PROJECTS, project.name, 'agent-transcripts');\n        // Try .txt (older Cursor) then .jsonl inside session directory (newer Cursor)\n        for (const candidate of [\n          path.join(transcriptsDir, `${sessionId}.txt`),\n          path.join(transcriptsDir, sessionId, `${sessionId}.jsonl`),\n        ]) {\n          try {\n            fs.accessSync(candidate);\n            return candidate;\n          } catch { /* not here */ }\n        }\n      }\n    } catch { /* projects dir doesn't exist */ }\n    return null;\n  },\n\n  parseTurns(content: string): TranscriptTurn[] {\n    // Detect format: JSONL (starts with '{') or plain text (starts with 'user:')\n    const trimmed = content.trimStart();\n    if (trimmed.startsWith('{')) {\n      return parseCursorJsonl(content);\n    }\n    return parseCursorText(content);\n  },\n\n  configureVaultEnv(projectRoot: string, vaultDir: string): boolean {\n    const mcpPath = path.join(projectRoot, '.cursor', 'mcp.json');\n    if (!fs.existsSync(mcpPath)) return false;\n\n    try {\n      const config = JSON.parse(fs.readFileSync(mcpPath, 'utf-8'));\n      if (config.mcpServers?.myco) {\n        config.mcpServers.myco.env = { ...config.mcpServers.myco.env, MYCO_VAULT_DIR: vaultDir };\n        fs.writeFileSync(mcpPath, JSON.stringify(config, null, 2) + '\\n', 'utf-8');\n        return true;\n      }\n    } catch { /* malformed config */ }\n    return false;\n  },\n};\n\n/** Parse Cursor's newer JSONL format — same structure as Claude's but uses 'role' field */\nfunction parseCursorJsonl(content: string): TranscriptTurn[] {\n  return parseJsonlTurns(content, {\n    roleField: 'role',\n    extractTimestamp: false,\n    skipToolResultUsers: false,\n    stripImageTextRefs: false,\n  });\n}\n\n/** Parse Cursor's older plain-text transcript format. */\nfunction parseCursorText(content: string): TranscriptTurn[] {\n    const turns: TranscriptTurn[] = [];\n    // Split on user marker — each block is a new human turn.\n    const sections = ('\\n' + content).split(USER_MARKER).slice(1);\n\n    for (const section of sections) {\n      // Extract user query from <user_query> tags or raw text before first assistant response\n      let promptText = '';\n      const queryMatch = section.match(/<user_query>\\s*([\\s\\S]*?)\\s*<\\/user_query>/);\n      if (queryMatch) {\n        promptText = queryMatch[1].trim().slice(0, PROMPT_PREVIEW_CHARS);\n      } else {\n        // No tags — take text before the first assistant response.\n        const beforeAssistant = section.split(ASSISTANT_MARKER)[0];\n        promptText = beforeAssistant.replace(/<[^>]+>[\\s\\S]*?<\\/[^>]+>/g, '').trim().slice(0, PROMPT_PREVIEW_CHARS);\n      }\n\n      // Extract image references from <image_files> tags\n      const images: TranscriptImage[] = [];\n      const imageFilesMatch = section.match(/<image_files>([\\s\\S]*?)<\\/image_files>/);\n      if (imageFilesMatch) {\n        const imageBlock = imageFilesMatch[1];\n        const pathMatches = imageBlock.matchAll(/^\\d+\\.\\s+(.+\\.(?:png|jpg|jpeg|gif|webp))\\s*$/gmi);\n        for (const match of pathMatches) {\n          const imagePath = match[1].trim();\n          try {\n            const data = fs.readFileSync(imagePath).toString('base64');\n            const mediaType = mimeTypeForExtension(path.extname(imagePath));\n            images.push({ data, mediaType });\n          } catch {\n            // Image file not accessible — skip\n          }\n        }\n      }\n\n      // Count tool calls in assistant sections\n      const toolCallCount = section.split(TOOL_CALL_MARKER).length - 1;\n\n      // Extract the last meaningful assistant text response.\n      // Scan assistant blocks (split on \\nA:\\n) from the end.\n      // A block is \"meaningful\" if it contains lines that aren't tool calls/results/thinking.\n      let aiResponse: string | undefined;\n      const assistantBlocks = section.split(ASSISTANT_MARKER).slice(1);\n      for (let j = assistantBlocks.length - 1; j >= 0; j--) {\n        const lines = assistantBlocks[j].split('\\n');\n        const textLines: string[] = [];\n        let skip = false;\n        for (const line of lines) {\n          // Skip tool calls, tool results, and thinking blocks\n          if (line.startsWith(TOOL_CALL_MARKER) || line.startsWith(TOOL_RESULT_MARKER) || line.startsWith(THINKING_MARKER)) {\n            skip = true;\n            continue;\n          }\n          // Resume after a blank line following a skipped block\n          if (skip && line.trim() === '') continue;\n          if (skip && !line.startsWith('  ')) skip = false; // End of indented tool args\n          if (skip) continue;\n          textLines.push(line);\n        }\n        const text = textLines.join('\\n').trim();\n        if (text) {\n          aiResponse = text;\n          break;\n        }\n      }\n\n      if (promptText || images.length > 0) {\n        turns.push({\n          prompt: promptText,\n          toolCount: toolCallCount,\n          timestamp: '',\n          ...(aiResponse ? { aiResponse } : {}),\n          ...(images.length > 0 ? { images } : {}),\n        });\n      }\n    }\n\n    return turns;\n}\n","import type { SymbiontAdapter, TranscriptTurn } from './adapter.js';\nimport { claudeCodeAdapter } from './claude-code.js';\nimport { cursorAdapter } from './cursor.js';\nimport fs from 'node:fs';\n\n/**\n * All known symbiont adapters, ordered by priority.\n * When searching for a transcript, adapters are tried in order.\n * Add new adapters here as symbiont support grows.\n */\nconst ALL_ADAPTERS: SymbiontAdapter[] = [\n  claudeCodeAdapter,\n  cursorAdapter,\n];\n\nexport class SymbiontRegistry {\n  private adapters: SymbiontAdapter[];\n\n  constructor(additionalAdapters: SymbiontAdapter[] = []) {\n    this.adapters = [...ALL_ADAPTERS, ...additionalAdapters];\n  }\n\n  /**\n   * Find and parse transcript turns for a session.\n   * Tries each adapter in priority order. Returns the first match.\n   */\n  getTranscriptTurns(sessionId: string): { turns: TranscriptTurn[]; source: string } | null {\n    for (const adapter of this.adapters) {\n      const filePath = adapter.findTranscript(sessionId);\n      if (!filePath) continue;\n\n      try {\n        const content = fs.readFileSync(filePath, 'utf-8');\n        const turns = adapter.parseTurns(content);\n        if (turns.length > 0) {\n          return { turns, source: adapter.name };\n        }\n      } catch {\n        // Adapter found a path but read/parse failed — try next\n      }\n    }\n    return null;\n  }\n\n  /** List all registered adapter names */\n  get adapterNames(): string[] {\n    return this.adapters.map((a) => a.name);\n  }\n\n  /** Get a specific adapter by name */\n  getAdapter(name: string): SymbiontAdapter | undefined {\n    return this.adapters.find((a) => a.name === name);\n  }\n\n  /** Detect which symbiont is currently active based on environment variables */\n  detectActiveAgent(): SymbiontAdapter | undefined {\n    for (const adapter of this.adapters) {\n      if (process.env[adapter.pluginRootEnvVar]) {\n        return adapter;\n      }\n    }\n    return undefined;\n  }\n\n  /**\n   * Parse turns from a known transcript file path (provided by hook).\n   * Tries each adapter's parseTurns until one produces results.\n   * Skips directory scanning entirely — the path is already known.\n   */\n  parseTurnsFromPath(filePath: string): { turns: TranscriptTurn[]; source: string } | null {\n    try {\n      const content = fs.readFileSync(filePath, 'utf-8');\n      // Try the active agent's parser first, then fall back to others\n      const active = this.detectActiveAgent();\n      const orderedAdapters = active\n        ? [active, ...this.adapters.filter((a) => a !== active)]\n        : this.adapters;\n\n      for (const adapter of orderedAdapters) {\n        const turns = adapter.parseTurns(content);\n        if (turns.length > 0) {\n          return { turns, source: `${adapter.name}:direct` };\n        }\n      }\n    } catch {\n      // File unreadable — caller will fall back to directory scanning\n    }\n    return null;\n  }\n\n  /**\n   * Resolve the plugin root directory from the active agent's environment variable.\n   * Returns undefined if no agent env var is set (e.g., running from CLI directly).\n   */\n  resolvePluginRoot(): string | undefined {\n    for (const adapter of this.adapters) {\n      const value = process.env[adapter.pluginRootEnvVar];\n      if (value) return value;\n    }\n    return undefined;\n  }\n}\n","import fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\nimport { SymbiontRegistry } from '../symbionts/registry.js';\nimport { OllamaBackend } from '../intelligence/ollama.js';\nimport { LmStudioBackend } from '../intelligence/lm-studio.js';\n\nimport { DaemonClient } from '../hooks/client.js';\nimport { initDatabase, closeDatabase, vaultDbPath } from '../db/client.js';\n\nexport { parseStringFlag, parseIntFlag } from '../logs/format.js';\n\n/**\n * Initialize the singleton database for direct CLI reads.\n * Used by CLI commands that only need reads (stats, search, session).\n * Does NOT require the daemon to be running — WAL mode allows concurrent reads.\n *\n * @returns a cleanup function that closes the database.\n */\nexport function initVaultDb(vaultDir: string): () => void {\n  initDatabase(vaultDbPath(vaultDir));\n  return closeDatabase;\n}\n\n/** Connect to the daemon, ensuring it's running. Exits on failure. */\nexport async function connectToDaemon(vaultDir: string): Promise<DaemonClient> {\n  const client = new DaemonClient(vaultDir);\n  const healthy = await client.ensureRunning();\n  if (!healthy) {\n    console.error('Failed to connect to daemon');\n    process.exit(1);\n  }\n  return client;\n}\n\n/** Load .env from cwd (not script location — that's the plugin install dir). */\nexport function loadEnv(): void {\n  const envPath = path.resolve(process.cwd(), '.env');\n  if (!fs.existsSync(envPath)) return;\n  for (const line of fs.readFileSync(envPath, 'utf-8').split('\\n')) {\n    const match = line.match(/^\\s*([^#=]+?)\\s*=\\s*(.*?)\\s*$/);\n    if (match && !process.env[match[1]]) {\n      process.env[match[1]] = match[2];\n    }\n  }\n}\n\nexport function isProcessAlive(pid: number): boolean {\n  try { process.kill(pid, 0); return true; } catch { return false; }\n}\n\n// --- Provider defaults (sourced from backend classes) ---\nexport const PROVIDER_DEFAULTS: Record<string, { base_url: string }> = {\n  ollama: { base_url: OllamaBackend.DEFAULT_BASE_URL },\n  'lm-studio': { base_url: LmStudioBackend.DEFAULT_BASE_URL },\n};\n\n\nexport const VAULT_GITIGNORE = `# SQLite database\nmyco.db\nmyco.db-wal\nmyco.db-shm\n\n# Daemon state — per-machine, ephemeral\ndaemon.json\nbuffer/\nlogs/\n\n# Secrets — API keys for cloud providers\nsecrets.env\n\n# Binary attachments — screenshots captured from transcripts\nattachments/\n`;\n\n/** Collapse an absolute home-dir path to its `~/` form for portable config storage. */\nexport function collapseHomePath(absPath: string): string {\n  const home = os.homedir();\n  if (absPath.startsWith(home + path.sep) || absPath === home) {\n    return '~' + absPath.slice(home.length);\n  }\n  return absPath;\n}\n\n/** Set MYCO_VAULT_DIR in the active agent's config, falling back to all known agents. */\nexport function configureVaultEnv(projectRoot: string, vaultDir: string): void {\n  const registry = new SymbiontRegistry();\n  const active = registry.detectActiveAgent();\n  // Store the portable ~/... form so config files don't leak the username\n  const portableDir = collapseHomePath(vaultDir);\n\n  if (active) {\n    if (active.configureVaultEnv(projectRoot, portableDir)) {\n      console.log(`Set MYCO_VAULT_DIR for ${active.displayName}`);\n    }\n  } else {\n    // No active agent detected — try all adapters\n    for (const name of registry.adapterNames) {\n      const adapter = registry.getAdapter(name);\n      if (adapter?.configureVaultEnv(projectRoot, portableDir)) {\n        console.log(`Set MYCO_VAULT_DIR for ${adapter.displayName}`);\n      }\n    }\n  }\n\n  console.log(`\\nFor other agents, add to your shell profile:`);\n  console.log(`  export 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