@goondocks/myco 0.6.4 → 0.9.0

package/dist/session-Z2FXDDG6.js

@@ -0,0 +1,68 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  initVaultDb
+} from "./chunk-KB4DGYIY.js";
+import "./chunk-SAKJMNSR.js";
+import "./chunk-UBZPD4HN.js";
+import {
+  getSession,
+  listSessions
+} from "./chunk-4LPQ26CK.js";
+import "./chunk-MYX5NCRH.js";
+import "./chunk-TRUJLI6K.js";
+import "./chunk-5VZ52A4T.js";
+import "./chunk-WGTCA2NU.js";
+import "./chunk-PB6TOLRQ.js";
+import "./chunk-LPUQPDC2.js";
+import "./chunk-PZUWP5VK.js";
+
+// src/cli/session.ts
+async function run(args, vaultDir) {
+  const idOrLatest = args[0];
+  const cleanup = initVaultDb(vaultDir);
+  try {
+    const sessions = listSessions({ limit: 100 });
+    if (sessions.length === 0) {
+      console.log("No sessions found");
+      return;
+    }
+    let targetId;
+    if (!idOrLatest || idOrLatest === "latest") {
+      targetId = sessions[0].id;
+    } else {
+      const match = sessions.find((s) => s.id.includes(idOrLatest));
+      if (!match) {
+        console.error(`Session not found: ${idOrLatest}`);
+        console.log("Available:", sessions.map((s) => s.id.slice(0, 12)).join(", "));
+        return;
+      }
+      targetId = match.id;
+    }
+    const target = getSession(targetId);
+    if (!target) {
+      console.error(`Failed to fetch session: ${targetId}`);
+      return;
+    }
+    console.log(`Session: ${target.id}`);
+    console.log(`Status:  ${target.status}`);
+    if (target.title) console.log(`Title:   ${target.title}`);
+    if (target.branch) console.log(`Branch:  ${target.branch}`);
+    if (target.user) console.log(`User:    ${target.user}`);
+    console.log(`Started: ${new Date(target.started_at * 1e3).toISOString()}`);
+    if (target.ended_at) console.log(`Ended:   ${new Date(target.ended_at * 1e3).toISOString()}`);
+    if (target.prompt_count) console.log(`Prompts: ${target.prompt_count}`);
+    if (target.tool_count) console.log(`Tools:   ${target.tool_count}`);
+    if (target.summary) console.log(`
+Summary:
+${target.summary}`);
+  } catch (err) {
+    console.error("Failed to read vault database:", err.message);
+    process.exit(1);
+  } finally {
+    cleanup();
+  }
+}
+export {
+  run
+};
+//# sourceMappingURL=session-Z2FXDDG6.js.map

package/dist/session-Z2FXDDG6.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/session.ts"],"sourcesContent":["/**\n * CLI: myco session — display session info via direct SQLite reads.\n *\n * Opens the database directly (WAL mode allows concurrent reads).\n * Does NOT require the daemon to be running.\n */\n\nimport { listSessions, getSession } from '@myco/db/queries/sessions.js';\nimport { initVaultDb } from './shared.js';\n\n// ---------------------------------------------------------------------------\n// Command\n// ---------------------------------------------------------------------------\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const idOrLatest = args[0];\n\n  const cleanup = initVaultDb(vaultDir);\n  try {\n    const sessions = listSessions({ limit: 100 });\n    if (sessions.length === 0) {\n      console.log('No sessions found');\n      return;\n    }\n\n    // Resolve target session ID\n    let targetId: string;\n    if (!idOrLatest || idOrLatest === 'latest') {\n      targetId = sessions[0].id;\n    } else {\n      const match = sessions.find((s) => s.id.includes(idOrLatest));\n      if (!match) {\n        console.error(`Session not found: ${idOrLatest}`);\n        console.log('Available:', sessions.map((s) => s.id.slice(0, 12)).join(', '));\n        return;\n      }\n      targetId = match.id;\n    }\n\n    // Fetch full session detail\n    const target = getSession(targetId);\n    if (!target) {\n      console.error(`Failed to fetch session: ${targetId}`);\n      return;\n    }\n\n    console.log(`Session: ${target.id}`);\n    console.log(`Status:  ${target.status}`);\n    if (target.title) console.log(`Title:   ${target.title}`);\n    if (target.branch) console.log(`Branch:  ${target.branch}`);\n    if (target.user) console.log(`User:    ${target.user}`);\n    console.log(`Started: ${new Date(target.started_at * 1000).toISOString()}`);\n    if (target.ended_at) console.log(`Ended:   ${new Date(target.ended_at * 1000).toISOString()}`);\n    if (target.prompt_count) console.log(`Prompts: ${target.prompt_count}`);\n    if (target.tool_count) console.log(`Tools:   ${target.tool_count}`);\n    if (target.summary) console.log(`\\nSummary:\\n${target.summary}`);\n  } catch (err) {\n    console.error('Failed to read vault database:', (err as Error).message);\n    process.exit(1);\n  } finally {\n    cleanup();\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;AAcA,eAAsB,IAAI,MAAgB,UAAiC;AACzE,QAAM,aAAa,KAAK,CAAC;AAEzB,QAAM,UAAU,YAAY,QAAQ;AACpC,MAAI;AACF,UAAM,WAAW,aAAa,EAAE,OAAO,IAAI,CAAC;AAC5C,QAAI,SAAS,WAAW,GAAG;AACzB,cAAQ,IAAI,mBAAmB;AAC/B;AAAA,IACF;AAGA,QAAI;AACJ,QAAI,CAAC,cAAc,eAAe,UAAU;AAC1C,iBAAW,SAAS,CAAC,EAAE;AAAA,IACzB,OAAO;AACL,YAAM,QAAQ,SAAS,KAAK,CAAC,MAAM,EAAE,GAAG,SAAS,UAAU,CAAC;AAC5D,UAAI,CAAC,OAAO;AACV,gBAAQ,MAAM,sBAAsB,UAAU,EAAE;AAChD,gBAAQ,IAAI,cAAc,SAAS,IAAI,CAAC,MAAM,EAAE,GAAG,MAAM,GAAG,EAAE,CAAC,EAAE,KAAK,IAAI,CAAC;AAC3E;AAAA,MACF;AACA,iBAAW,MAAM;AAAA,IACnB;AAGA,UAAM,SAAS,WAAW,QAAQ;AAClC,QAAI,CAAC,QAAQ;AACX,cAAQ,MAAM,4BAA4B,QAAQ,EAAE;AACpD;AAAA,IACF;AAEA,YAAQ,IAAI,YAAY,OAAO,EAAE,EAAE;AACnC,YAAQ,IAAI,YAAY,OAAO,MAAM,EAAE;AACvC,QAAI,OAAO,MAAO,SAAQ,IAAI,YAAY,OAAO,KAAK,EAAE;AACxD,QAAI,OAAO,OAAQ,SAAQ,IAAI,YAAY,OAAO,MAAM,EAAE;AAC1D,QAAI,OAAO,KAAM,SAAQ,IAAI,YAAY,OAAO,IAAI,EAAE;AACtD,YAAQ,IAAI,YAAY,IAAI,KAAK,OAAO,aAAa,GAAI,EAAE,YAAY,CAAC,EAAE;AAC1E,QAAI,OAAO,SAAU,SAAQ,IAAI,YAAY,IAAI,KAAK,OAAO,WAAW,GAAI,EAAE,YAAY,CAAC,EAAE;AAC7F,QAAI,OAAO,aAAc,SAAQ,IAAI,YAAY,OAAO,YAAY,EAAE;AACtE,QAAI,OAAO,WAAY,SAAQ,IAAI,YAAY,OAAO,UAAU,EAAE;AAClE,QAAI,OAAO,QAAS,SAAQ,IAAI;AAAA;AAAA,EAAe,OAAO,OAAO,EAAE;AAAA,EACjE,SAAS,KAAK;AACZ,YAAQ,MAAM,kCAAmC,IAAc,OAAO;AACtE,YAAQ,KAAK,CAAC;AAAA,EAChB,UAAE;AACA,YAAQ;AAAA,EACV;AACF;","names":[]}

package/dist/session-end-FLVX32LE.js

@@ -0,0 +1,38 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  readStdin
+} from "./chunk-XNOCTDHF.js";
+import {
+  DaemonClient
+} from "./chunk-TRUJLI6K.js";
+import "./chunk-5VZ52A4T.js";
+import "./chunk-WGTCA2NU.js";
+import "./chunk-PB6TOLRQ.js";
+import "./chunk-LPUQPDC2.js";
+import {
+  resolveVaultDir
+} from "./chunk-JTYZRPX5.js";
+import "./chunk-PZUWP5VK.js";
+
+// src/hooks/session-end.ts
+import fs from "fs";
+import path from "path";
+async function main() {
+  const VAULT_DIR = resolveVaultDir();
+  if (!fs.existsSync(path.join(VAULT_DIR, "myco.yaml"))) return;
+  try {
+    const input = JSON.parse(await readStdin());
+    const sessionId = input.session_id ?? process.env.MYCO_SESSION_ID;
+    const client = new DaemonClient(VAULT_DIR);
+    if (sessionId) {
+      await client.post("/sessions/unregister", { session_id: sessionId });
+    }
+  } catch (error) {
+    process.stderr.write(`[myco] session-end error: ${error.message}
+`);
+  }
+}
+export {
+  main
+};
+//# sourceMappingURL=session-end-FLVX32LE.js.map

package/dist/session-end-FLVX32LE.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/hooks/session-end.ts"],"sourcesContent":["import { DaemonClient } from './client.js';\nimport { readStdin } from './read-stdin.js';\nimport { resolveVaultDir } from '../vault/resolve.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nexport async function main() {\n  const VAULT_DIR = resolveVaultDir();\n  if (!fs.existsSync(path.join(VAULT_DIR, 'myco.yaml'))) return;\n\n  try {\n    const input = JSON.parse(await readStdin());\n    const sessionId = input.session_id ?? process.env.MYCO_SESSION_ID;\n\n    const client = new DaemonClient(VAULT_DIR);\n    if (sessionId) {\n      await client.post('/sessions/unregister', { session_id: sessionId });\n    }\n  } catch (error) {\n    process.stderr.write(`[myco] session-end error: ${(error as Error).message}\\n`);\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;AAGA,OAAO,QAAQ;AACf,OAAO,UAAU;AAEjB,eAAsB,OAAO;AAC3B,QAAM,YAAY,gBAAgB;AAClC,MAAI,CAAC,GAAG,WAAW,KAAK,KAAK,WAAW,WAAW,CAAC,EAAG;AAEvD,MAAI;AACF,UAAM,QAAQ,KAAK,MAAM,MAAM,UAAU,CAAC;AAC1C,UAAM,YAAY,MAAM,cAAc,QAAQ,IAAI;AAElD,UAAM,SAAS,IAAI,aAAa,SAAS;AACzC,QAAI,WAAW;AACb,YAAM,OAAO,KAAK,wBAAwB,EAAE,YAAY,UAAU,CAAC;AAAA,IACrE;AAAA,EACF,SAAS,OAAO;AACd,YAAQ,OAAO,MAAM,6BAA8B,MAAgB,OAAO;AAAA,CAAI;AAAA,EAChF;AACF;","names":[]}

package/dist/session-start-UCLK7PXE.js

@@ -0,0 +1,169 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  listSpores
+} from "./chunk-3K5WGSJ4.js";
+import {
+  listSessions
+} from "./chunk-4LPQ26CK.js";
+import {
+  createSchema
+} from "./chunk-KV4OC4H3.js";
+import {
+  loadConfig
+} from "./chunk-MHSCMET3.js";
+import "./chunk-D7TYRPRM.js";
+import "./chunk-E4VLWIJC.js";
+import "./chunk-KH64DHOY.js";
+import {
+  getDatabase,
+  initDatabase,
+  vaultDbPath
+} from "./chunk-MYX5NCRH.js";
+import {
+  readStdin
+} from "./chunk-XNOCTDHF.js";
+import {
+  DaemonClient
+} from "./chunk-TRUJLI6K.js";
+import {
+  CONTEXT_SESSION_PREVIEW_CHARS,
+  CONTEXT_SPORE_PREVIEW_CHARS,
+  EXCLUDED_SPORE_STATUSES,
+  estimateTokens
+} from "./chunk-5VZ52A4T.js";
+import "./chunk-WGTCA2NU.js";
+import "./chunk-PB6TOLRQ.js";
+import "./chunk-LPUQPDC2.js";
+import {
+  resolveVaultDir
+} from "./chunk-JTYZRPX5.js";
+import "./chunk-PZUWP5VK.js";
+
+// src/context/injector.ts
+var CONTEXT_SESSION_LIMIT = 10;
+var CONTEXT_SESSION_DISPLAY_LIMIT = 5;
+var CONTEXT_SPORE_FETCH_LIMIT = 20;
+var CONTEXT_SPORE_DISPLAY_LIMIT = 5;
+var DEFAULT_SESSIONS_BUDGET = 500;
+var DEFAULT_SPORES_BUDGET = 300;
+var DEFAULT_TEAM_BUDGET = 200;
+var DEFAULT_CONTEXT_MAX_TOKENS = 1200;
+async function buildInjectedContext(_config, context) {
+  try {
+    getDatabase();
+  } catch {
+    return emptyContext();
+  }
+  const [sessions, spores] = await Promise.all([
+    listSessions({ limit: CONTEXT_SESSION_LIMIT }),
+    listSpores({ limit: CONTEXT_SPORE_FETCH_LIMIT, status: "active" })
+  ]);
+  const sessionsText = formatLayer(
+    "Recent Sessions",
+    sessions.slice(0, CONTEXT_SESSION_DISPLAY_LIMIT).map((s) => {
+      const title = s.title ?? s.id;
+      const summary = (s.summary ?? "").slice(0, CONTEXT_SESSION_PREVIEW_CHARS);
+      const branchLabel = s.branch === context.branch ? " (same branch)" : "";
+      return `- **${title}**: ${summary}${branchLabel}`;
+    }),
+    DEFAULT_SESSIONS_BUDGET
+  );
+  const filteredSpores = spores.filter(
+    (s) => !EXCLUDED_SPORE_STATUSES.has(s.status)
+  );
+  const sporesText = formatLayer(
+    "Relevant Spores",
+    filteredSpores.slice(0, CONTEXT_SPORE_DISPLAY_LIMIT).map(
+      (s) => `- **${s.id}** (${s.observation_type}): ${s.content.slice(0, CONTEXT_SPORE_PREVIEW_CHARS)}`
+    ),
+    DEFAULT_SPORES_BUDGET
+  );
+  const teamText = formatLayer("Team Activity", [], DEFAULT_TEAM_BUDGET);
+  const allLayers = [sessionsText, sporesText, teamText].filter(Boolean);
+  const parts = [];
+  let totalTokens = 0;
+  for (const layer of allLayers) {
+    const layerTokens = estimateTokens(layer);
+    if (totalTokens + layerTokens > DEFAULT_CONTEXT_MAX_TOKENS) break;
+    parts.push(layer);
+    totalTokens += layerTokens;
+  }
+  const fullText = parts.join("\n\n");
+  return {
+    text: fullText,
+    tokenEstimate: totalTokens,
+    layers: {
+      sessions: sessionsText,
+      spores: sporesText,
+      team: teamText
+    }
+  };
+}
+function emptyContext() {
+  return {
+    text: "",
+    tokenEstimate: 0,
+    layers: { sessions: "", spores: "", team: "" }
+  };
+}
+function formatLayer(heading, items, budget) {
+  if (items.length === 0) return "";
+  let text = `### ${heading}
+`;
+  let currentTokens = estimateTokens(text);
+  for (const item of items) {
+    const itemTokens = estimateTokens(item);
+    if (currentTokens + itemTokens > budget) break;
+    text += item + "\n";
+    currentTokens += itemTokens;
+  }
+  return text.trim();
+}
+
+// src/hooks/session-start.ts
+import { execFileSync } from "child_process";
+import fs from "fs";
+import path from "path";
+async function main() {
+  const VAULT_DIR = resolveVaultDir();
+  if (!fs.existsSync(path.join(VAULT_DIR, "myco.yaml"))) return;
+  try {
+    const config = loadConfig(VAULT_DIR);
+    const client = new DaemonClient(VAULT_DIR);
+    const healthy = await client.ensureRunning();
+    const input = JSON.parse(await readStdin());
+    const sessionId = input.session_id ?? `s-${Date.now()}`;
+    let branch;
+    try {
+      branch = execFileSync("git", ["rev-parse", "--abbrev-ref", "HEAD"], { encoding: "utf-8" }).trim();
+    } catch {
+    }
+    if (healthy) {
+      await client.post("/sessions/register", {
+        session_id: sessionId,
+        branch,
+        started_at: (/* @__PURE__ */ new Date()).toISOString()
+      });
+      const contextResult = await client.post("/context", { session_id: sessionId, branch });
+      if (contextResult.ok && contextResult.data?.text) {
+        if (contextResult.data.source === "digest") {
+          process.stderr.write(`[myco] Injecting digest extract (tier ${contextResult.data.tier})
+`);
+        }
+        process.stdout.write(contextResult.data.text);
+        return;
+      }
+    }
+    const db = initDatabase(vaultDbPath(VAULT_DIR));
+    createSchema(db);
+    const injected = await buildInjectedContext(config, { branch });
+    if (injected.text) process.stdout.write(injected.text);
+  } catch (error) {
+    process.stderr.write(`[myco] session-start error: ${error.message}
+`);
+  }
+}
+export {
+  main
+};
+//# sourceMappingURL=session-start-UCLK7PXE.js.map

package/dist/session-start-UCLK7PXE.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/context/injector.ts","../src/hooks/session-start.ts"],"sourcesContent":["/**\n * Context injector — assembles context from SQLite for hook injection.\n *\n * Queries sessions and spores from SQLite. For prompt-submit context,\n * semantic search is deferred to Phase 2 (requires daemon vector store).\n * If no data exists (zero-config), returns empty context gracefully.\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { listSessions } from '@myco/db/queries/sessions.js';\nimport { listSpores } from '@myco/db/queries/spores.js';\nimport type { MycoConfig } from '@myco/config/schema.js';\nimport {\n  estimateTokens,\n  CONTEXT_SESSION_PREVIEW_CHARS,\n  CONTEXT_SPORE_PREVIEW_CHARS,\n  PROMPT_CONTEXT_MIN_LENGTH,\n  EXCLUDED_SPORE_STATUSES,\n} from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Max recent sessions to include in context. */\nconst CONTEXT_SESSION_LIMIT = 10;\n\n/** Max sessions displayed after scoring. */\nconst CONTEXT_SESSION_DISPLAY_LIMIT = 5;\n\n/** Max spores to fetch for scoring. */\nconst CONTEXT_SPORE_FETCH_LIMIT = 20;\n\n/** Max spores displayed after scoring. */\nconst CONTEXT_SPORE_DISPLAY_LIMIT = 5;\n\n/** Default token budget for sessions layer. */\nconst DEFAULT_SESSIONS_BUDGET = 500;\n\n/** Default token budget for spores layer. */\nconst DEFAULT_SPORES_BUDGET = 300;\n\n/** Default token budget for team layer. */\nconst DEFAULT_TEAM_BUDGET = 200;\n\n/** Default total context max tokens. */\nconst DEFAULT_CONTEXT_MAX_TOKENS = 1200;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\ninterface InjectionContext {\n  branch?: string;\n}\n\ninterface InjectedContext {\n  text: string;\n  tokenEstimate: number;\n  layers: {\n    sessions: string;\n    spores: string;\n    team: string;\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Build injected context from SQLite data.\n *\n * Returns empty context gracefully when no data exists (zero-config behavior).\n */\nexport async function buildInjectedContext(\n  _config: MycoConfig,\n  context: InjectionContext,\n): Promise<InjectedContext> {\n  // Verify database is available — return empty if not\n  try {\n    getDatabase();\n  } catch {\n    return emptyContext();\n  }\n\n  // Fetch sessions and spores in parallel\n  const [sessions, spores] = await Promise.all([\n    listSessions({ limit: CONTEXT_SESSION_LIMIT }),\n    listSpores({ limit: CONTEXT_SPORE_FETCH_LIMIT, status: 'active' }),\n  ]);\n\n  // Layer 1: Recent sessions\n  const sessionsText = formatLayer(\n    'Recent Sessions',\n    sessions.slice(0, CONTEXT_SESSION_DISPLAY_LIMIT).map((s) => {\n      const title = s.title ?? s.id;\n      const summary = (s.summary ?? '').slice(0, CONTEXT_SESSION_PREVIEW_CHARS);\n      const branchLabel = s.branch === context.branch ? ' (same branch)' : '';\n      return `- **${title}**: ${summary}${branchLabel}`;\n    }),\n    DEFAULT_SESSIONS_BUDGET,\n  );\n\n  // Layer 2: Relevant spores (exclude superseded/archived)\n  const filteredSpores = spores.filter((s) =>\n    !EXCLUDED_SPORE_STATUSES.has(s.status),\n  );\n  const sporesText = formatLayer(\n    'Relevant Spores',\n    filteredSpores.slice(0, CONTEXT_SPORE_DISPLAY_LIMIT).map((s) =>\n      `- **${s.id}** (${s.observation_type}): ${s.content.slice(0, CONTEXT_SPORE_PREVIEW_CHARS)}`,\n    ),\n    DEFAULT_SPORES_BUDGET,\n  );\n\n  // Layer 3: Team activity (placeholder — populated in Phase 2)\n  const teamText = formatLayer('Team Activity', [], DEFAULT_TEAM_BUDGET);\n\n  // Enforce total max_tokens budget\n  const allLayers = [sessionsText, sporesText, teamText].filter(Boolean);\n  const parts: string[] = [];\n  let totalTokens = 0;\n\n  for (const layer of allLayers) {\n    const layerTokens = estimateTokens(layer);\n    if (totalTokens + layerTokens > DEFAULT_CONTEXT_MAX_TOKENS) break;\n    parts.push(layer);\n    totalTokens += layerTokens;\n  }\n\n  const fullText = parts.join('\\n\\n');\n\n  return {\n    text: fullText,\n    tokenEstimate: totalTokens,\n    layers: {\n      sessions: sessionsText,\n      spores: sporesText,\n      team: teamText,\n    },\n  };\n}\n\n/**\n * Build per-prompt context using semantic search on spores.\n *\n * Semantic search via the daemon's in-process vector store is deferred to\n * Phase 2. For now, returns empty context. The hook (`user-prompt-submit`)\n * routes through the daemon API at `/context/prompt`, which will implement\n * vector search when ready.\n */\nexport async function buildPromptContext(\n  prompt: string,\n  _config: MycoConfig,\n): Promise<InjectedContext> {\n  if (prompt.length < PROMPT_CONTEXT_MIN_LENGTH) {\n    return emptyContext();\n  }\n\n  // Per-prompt semantic search deferred to Phase 2 (requires daemon vector store)\n  return emptyContext();\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\nfunction emptyContext(): InjectedContext {\n  return {\n    text: '',\n    tokenEstimate: 0,\n    layers: { sessions: '', spores: '', team: '' },\n  };\n}\n\nfunction formatLayer(heading: string, items: string[], budget: number): string {\n  if (items.length === 0) return '';\n\n  let text = `### ${heading}\\n`;\n  let currentTokens = estimateTokens(text);\n\n  for (const item of items) {\n    const itemTokens = estimateTokens(item);\n    if (currentTokens + itemTokens > budget) break;\n    text += item + '\\n';\n    currentTokens += itemTokens;\n  }\n\n  return text.trim();\n}\n","import { DaemonClient } from './client.js';\nimport { readStdin } from './read-stdin.js';\nimport { loadConfig } from '../config/loader.js';\nimport { buildInjectedContext } from '../context/injector.js';\nimport { initDatabase, vaultDbPath } from '../db/client.js';\nimport { createSchema } from '../db/schema.js';\nimport { resolveVaultDir } from '../vault/resolve.js';\nimport { execFileSync } from 'node:child_process';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nexport async function main() {\n  const VAULT_DIR = resolveVaultDir();\n  if (!fs.existsSync(path.join(VAULT_DIR, 'myco.yaml'))) return;\n\n  try {\n    const config = loadConfig(VAULT_DIR);\n    const client = new DaemonClient(VAULT_DIR);\n    const healthy = await client.ensureRunning();\n\n    const input = JSON.parse(await readStdin());\n    const sessionId = input.session_id ?? 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package/dist/setup-digest-4KDSXAIV.js

@@ -0,0 +1,15 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import "./chunk-PZUWP5VK.js";
+
+// src/cli/setup-digest.ts
+async function run(_args, _vaultDir) {
+  console.log("Digest configuration has been removed in v3.");
+  console.log("The Myco agent (Claude Agent SDK) manages intelligence processing.");
+  console.log("");
+  console.log('Use "myco setup-llm" to configure the embedding provider, or');
+  console.log('use "myco config set embedding.model <model>" to change the embedding model.');
+}
+export {
+  run
+};
+//# sourceMappingURL=setup-digest-4KDSXAIV.js.map

package/dist/setup-digest-4KDSXAIV.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/setup-digest.ts"],"sourcesContent":["export async function run(_args: string[], _vaultDir: string): Promise<void> {\n  console.log('Digest configuration has been removed in v3.');\n  console.log('The Myco agent (Claude Agent SDK) manages intelligence processing.');\n  console.log('');\n  console.log('Use \"myco setup-llm\" to configure the embedding provider, or');\n  console.log('use \"myco config set embedding.model <model>\" to change the embedding model.');\n}\n"],"mappings":";;;;AAAA,eAAsB,IAAI,OAAiB,WAAkC;AAC3E,UAAQ,IAAI,8CAA8C;AAC1D,UAAQ,IAAI,oEAAoE;AAChF,UAAQ,IAAI,EAAE;AACd,UAAQ,IAAI,8DAA8D;AAC1E,UAAQ,IAAI,8EAA8E;AAC5F;","names":[]}

package/dist/setup-llm-GKMCHURK.js

@@ -0,0 +1,81 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  withEmbedding
+} from "./chunk-M5XWW7UI.js";
+import "./chunk-KB4DGYIY.js";
+import {
+  parseStringFlag
+} from "./chunk-SAKJMNSR.js";
+import "./chunk-UBZPD4HN.js";
+import {
+  loadConfig,
+  updateConfig
+} from "./chunk-MHSCMET3.js";
+import "./chunk-D7TYRPRM.js";
+import "./chunk-E4VLWIJC.js";
+import "./chunk-KH64DHOY.js";
+import "./chunk-MYX5NCRH.js";
+import "./chunk-TRUJLI6K.js";
+import "./chunk-5VZ52A4T.js";
+import "./chunk-WGTCA2NU.js";
+import "./chunk-PB6TOLRQ.js";
+import "./chunk-LPUQPDC2.js";
+import "./chunk-PZUWP5VK.js";
+
+// src/cli/setup-llm.ts
+import fs from "fs";
+import path from "path";
+var DAEMON_STATE_FILENAME = "daemon.json";
+var USAGE = `Usage: myco setup-llm [options]
+
+Configure embedding provider settings.
+
+In v3, LLM configuration is managed by the Myco agent (Claude Agent SDK).
+Only embedding settings are user-configurable.
+
+Options:
+  --embedding-provider <name>   Embedding provider (ollama, openai-compatible)
+  --embedding-model <name>      Embedding model name
+  --embedding-url <url>         Embedding provider base URL
+  --show                        Show current settings and exit
+`;
+async function run(args, vaultDir) {
+  if (args.includes("--show")) {
+    const config = loadConfig(vaultDir);
+    console.log(JSON.stringify(config.embedding, null, 2));
+    return;
+  }
+  if (args.length === 0) {
+    console.log(USAGE);
+    return;
+  }
+  const llmProvider = parseStringFlag(args, "--llm-provider");
+  const llmModel = parseStringFlag(args, "--llm-model");
+  const llmUrl = parseStringFlag(args, "--llm-url");
+  const llmContextWindow = parseStringFlag(args, "--llm-context-window");
+  const llmMaxTokens = parseStringFlag(args, "--llm-max-tokens");
+  if (llmProvider || llmModel || llmUrl || llmContextWindow || llmMaxTokens) {
+    console.log("Note: LLM configuration is managed by the Myco agent. LLM flags are ignored.");
+  }
+  const updates = {};
+  const embeddingProvider = parseStringFlag(args, "--embedding-provider");
+  if (embeddingProvider !== void 0) updates.provider = embeddingProvider;
+  const embeddingModel = parseStringFlag(args, "--embedding-model");
+  if (embeddingModel !== void 0) updates.model = embeddingModel;
+  const embeddingUrl = parseStringFlag(args, "--embedding-url");
+  if (embeddingUrl !== void 0) updates.base_url = embeddingUrl;
+  const updated = updateConfig(vaultDir, (config) => withEmbedding(config, updates));
+  console.log("Embedding configuration updated.");
+  console.log(JSON.stringify(updated.embedding, null, 2));
+  if (embeddingModel !== void 0) {
+    console.log("\nWarning: changing the embedding model requires a full vector index rebuild.");
+    console.log("Run: myco rebuild");
+  }
+  if (fs.existsSync(path.join(vaultDir, DAEMON_STATE_FILENAME))) {
+    console.log("\nNote: restart the daemon for changes to take effect (myco restart)");
+  }
+}
+export {
+  run
+};
+//# sourceMappingURL=setup-llm-GKMCHURK.js.map

package/dist/setup-llm-GKMCHURK.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/setup-llm.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport { loadConfig, updateConfig } from '../config/loader.js';\nimport { withEmbedding } from '../config/updates.js';\nimport { parseStringFlag } from './shared.js';\nimport type { EmbeddingProviderConfig } from '../config/schema.js';\n\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\nconst USAGE = `Usage: myco setup-llm [options]\n\nConfigure embedding provider settings.\n\nIn v3, LLM configuration is managed by the Myco agent (Claude Agent SDK).\nOnly embedding settings are user-configurable.\n\nOptions:\n  --embedding-provider <name>   Embedding provider (ollama, openai-compatible)\n  --embedding-model <name>      Embedding model name\n  --embedding-url <url>         Embedding provider base URL\n  --show                        Show current settings and exit\n`;\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  // Show current settings\n  if (args.includes('--show')) {\n    const config = loadConfig(vaultDir);\n    console.log(JSON.stringify(config.embedding, null, 2));\n    return;\n  }\n\n  // No flags = show usage\n  if (args.length === 0) {\n    console.log(USAGE);\n    return;\n  }\n\n  // Warn about removed LLM flags\n  const llmProvider = parseStringFlag(args, '--llm-provider');\n  const llmModel = parseStringFlag(args, '--llm-model');\n  const llmUrl = parseStringFlag(args, '--llm-url');\n  const llmContextWindow = parseStringFlag(args, '--llm-context-window');\n  const llmMaxTokens = parseStringFlag(args, '--llm-max-tokens');\n  if (llmProvider || llmModel || llmUrl || llmContextWindow || llmMaxTokens) {\n    console.log('Note: LLM configuration is managed by the Myco agent. LLM flags are ignored.');\n  }\n\n  // Build partial embedding update from flags\n  const updates: Partial<EmbeddingProviderConfig> = {};\n\n  const embeddingProvider = parseStringFlag(args, '--embedding-provider');\n  if (embeddingProvider !== undefined) updates.provider = embeddingProvider as EmbeddingProviderConfig['provider'];\n\n  const embeddingModel = parseStringFlag(args, '--embedding-model');\n  if (embeddingModel !== undefined) updates.model = embeddingModel;\n\n  const embeddingUrl = parseStringFlag(args, '--embedding-url');\n  if (embeddingUrl !== undefined) updates.base_url = embeddingUrl;\n\n  // Apply the update through the single write gate\n  const updated = updateConfig(vaultDir, (config) => withEmbedding(config, updates));\n\n  console.log('Embedding configuration updated.');\n  console.log(JSON.stringify(updated.embedding, null, 2));\n\n  if (embeddingModel !== undefined) {\n    console.log('\\nWarning: changing the embedding model requires a full vector index rebuild.');\n    console.log('Run: myco rebuild');\n  }\n\n  if (fs.existsSync(path.join(vaultDir, DAEMON_STATE_FILENAME))) {\n    console.log('\\nNote: restart the daemon for changes to take effect (myco restart)');\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,OAAO,QAAQ;AACf,OAAO,UAAU;AAMjB,IAAM,wBAAwB;AAE9B,IAAM,QAAQ;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAcd,eAAsB,IAAI,MAAgB,UAAiC;AAEzE,MAAI,KAAK,SAAS,QAAQ,GAAG;AAC3B,UAAM,SAAS,WAAW,QAAQ;AAClC,YAAQ,IAAI,KAAK,UAAU,OAAO,WAAW,MAAM,CAAC,CAAC;AACrD;AAAA,EACF;AAGA,MAAI,KAAK,WAAW,GAAG;AACrB,YAAQ,IAAI,KAAK;AACjB;AAAA,EACF;AAGA,QAAM,cAAc,gBAAgB,MAAM,gBAAgB;AAC1D,QAAM,WAAW,gBAAgB,MAAM,aAAa;AACpD,QAAM,SAAS,gBAAgB,MAAM,WAAW;AAChD,QAAM,mBAAmB,gBAAgB,MAAM,sBAAsB;AACrE,QAAM,eAAe,gBAAgB,MAAM,kBAAkB;AAC7D,MAAI,eAAe,YAAY,UAAU,oBAAoB,cAAc;AACzE,YAAQ,IAAI,8EAA8E;AAAA,EAC5F;AAGA,QAAM,UAA4C,CAAC;AAEnD,QAAM,oBAAoB,gBAAgB,MAAM,sBAAsB;AACtE,MAAI,sBAAsB,OAAW,SAAQ,WAAW;AAExD,QAAM,iBAAiB,gBAAgB,MAAM,mBAAmB;AAChE,MAAI,mBAAmB,OAAW,SAAQ,QAAQ;AAElD,QAAM,eAAe,gBAAgB,MAAM,iBAAiB;AAC5D,MAAI,iBAAiB,OAAW,SAAQ,WAAW;AAGnD,QAAM,UAAU,aAAa,UAAU,CAAC,WAAW,cAAc,QAAQ,OAAO,CAAC;AAEjF,UAAQ,IAAI,kCAAkC;AAC9C,UAAQ,IAAI,KAAK,UAAU,QAAQ,WAAW,MAAM,CAAC,CAAC;AAEtD,MAAI,mBAAmB,QAAW;AAChC,YAAQ,IAAI,+EAA+E;AAC3F,YAAQ,IAAI,mBAAmB;AAAA,EACjC;AAEA,MAAI,GAAG,WAAW,KAAK,KAAK,UAAU,qBAAqB,CAAC,GAAG;AAC7D,YAAQ,IAAI,sEAAsE;AAAA,EACpF;AACF;","names":[]}

package/dist/src/agent/definitions/agent.yaml

@@ -0,0 +1,35 @@
+# Built-in Myco agent definition.
+# Loaded at startup and registered in the agents table as source: 'built-in'.
+
+name: myco-agent
+displayName: Myco Agent
+description: >
+  Default intelligence agent that processes captured session data, extracts
+  observations (spores), builds the knowledge graph, manages spore lifecycle,
+  and synthesizes digest extracts.
+model: claude-sonnet-4-20250514
+maxTurns: 30
+timeoutSeconds: 300
+systemPromptPath: ../prompts/agent.md
+
+tools:
+  # Read tools
+  - vault_unprocessed
+  - vault_spores
+  - vault_sessions
+  - vault_search_fts
+  - vault_search_semantic
+  - vault_state
+  - vault_entities
+  - vault_edges
+  # Write tools
+  - vault_create_spore
+  - vault_create_entity
+  - vault_create_edge
+  - vault_resolve_spore
+  - vault_update_session
+  - vault_mark_processed
+  - vault_read_digest
+  - vault_write_digest
+  - vault_set_state
+  - vault_report

package/dist/src/agent/definitions/tasks/digest-only.yaml

@@ -0,0 +1,84 @@
+# =============================================================================
+# Built-in Task: Digest Only
+# =============================================================================
+# Regenerate digest extracts without processing new data.
+# Useful after manual edits to spores or after a consolidation run.
+# =============================================================================
+
+name: digest-only
+displayName: Digest Only
+description: >
+  Regenerate digest extracts at all token tiers using current vault knowledge.
+  Does not process new data or extract spores. Useful after manual edits
+  to spores or graph data.
+agent: myco-agent
+isDefault: false
+maxTurns: 28
+timeoutSeconds: 1800
+
+prompt: |
+  Regenerate digest extracts from current vault state.
+
+  ## Phase 1 — Assess Current State (budget: 4 turns)
+
+  1. Call `vault_state` for context
+  2. Call `vault_read_digest` (no tier param) to see current digest metadata
+     and assess whether any tiers exist and how fresh they are
+  3. Call `vault_spores` with status "active" to see current observations
+  4. Call `vault_sessions` to understand recent activity
+
+  If the current digest is very recent and no meaningful vault changes have
+  occurred since it was written (check spore counts and session dates), call
+  `vault_report` with action "skip" and reason "digest is already current",
+  then stop. Only proceed if there is genuine new material to incorporate.
+
+  ## Phase 2 — Survey New Material (budget: 5 turns)
+
+  Based on the spore types and tags you saw in Phase 1, construct targeted
+  search queries. Search for specific themes you identified, not generic
+  categories. For example, if Phase 1 showed new "gotcha" spores about SQLite
+  and new "decision" spores about caching, search for those specific topics.
+
+  Call `vault_search_semantic` with these targeted queries to gather the
+  material you will integrate into the digest.
+
+  The existing digest is your baseline — your goal is to integrate new
+  material into it, not start from scratch.
+
+  ## Phase 3 — Update Extracts (budget: 25 turns)
+
+  Update ALL 3 tiers in this order (largest first — each subsequent tier
+  is a compression of the one above):
+  1. Tier 10000 — Full institutional knowledge (update if any new content)
+  2. Tier 5000 — Deep onboarding (update if new trade-offs or patterns)
+  3. Tier 1500 — Executive briefing (most compressed — update if
+     important new decisions or gotchas)
+
+  For each tier: read current content via `vault_read_digest`, then write
+  the updated version via `vault_write_digest`. Each tier is self-contained.
+  Preserve well-crafted existing content — integrate new material, don't
+  rewrite from scratch.
+
+  If a tier genuinely has no new material to integrate, skip it — but
+  do not skip tiers just to save turns. All 3 tiers should be kept current.
+
+  Prioritize within each tier: recent insights > active decisions >
+  unresolved gotchas > architectural patterns > historical context.
+
+  ## Phase 4 — Report (budget: 1 turn)
+
+  Call `vault_report` with action "digest":
+  - Tiers updated: [list]
+  - Tiers skipped (already current): [list]
+  - Active spores used as substrate: N
+  - Key themes incorporated
+
+toolOverrides:
+  - vault_spores
+  - vault_sessions
+  - vault_search_semantic
+  - vault_state
+  - vault_read_digest
+  - vault_write_digest
+  - vault_set_state
+  - vault_report

package/dist/src/agent/definitions/tasks/extract-only.yaml

@@ -0,0 +1,87 @@
+# =============================================================================
+# Built-in Task: Extract Only
+# =============================================================================
+# Quick pass: extract spores from unprocessed batches and update summaries.
+# No graph building, no consolidation, no digest.
+# =============================================================================
+
+name: extract-only
+displayName: Extract Only
+description: >
+  Extract observations (spores) from unprocessed prompt batches without
+  building graph entities/edges or regenerating digest. Useful for a
+  quick pass that captures knowledge without full reasoning overhead.
+agent: myco-agent
+isDefault: false
+maxTurns: 30
+timeoutSeconds: 300
+
+prompt: |
+  Extract spores from unprocessed batches. No graph or digest work.
+  Budget: ~25 turns.
+
+  ## Phase 1 — Read State (budget: 2 turns)
+
+  1. Call `vault_state` to get cursor (`last_processed_batch_id`)
+  2. Call `vault_unprocessed` with `after_id`
+
+  If no unprocessed batches, report "no work" and finish.
+
+  ## Phase 2 — Extract (budget: 18 turns)
+
+  Budget ~3 turns per batch. If more batches than turns allow, prioritize
+  batches with longer prompts (these contain more substantive work).
+
+  For each batch:
+  1. Read `user_prompt` — understand what the developer asked
+  2. Identify candidate observations — genuine insights only, not activity logs
+  3. **Group candidates by topic across all batches** before searching.
+     One search call per topic is cheaper than one per batch.
+
+  For each TOPIC group:
+  1. Use `vault_search_semantic` to find existing spores that already cover this topic
+  2. If a similar spore exists:
+     - If the new observation adds meaningful new detail: call
+       `vault_create_spore` then supersede the old via `vault_resolve_spore`
+       action "supersede" with new_spore_id
+     - If the new observation adds nothing new: skip it entirely
+  3. If no similar spore exists: call `vault_create_spore`
+
+  After processing each batch:
+  4. Call `vault_mark_processed`
+  5. Update cursor via `vault_set_state`
+
+  ## Phase 3 — Session Summaries (budget: 4 turns)
+
+  For each session touched:
+  1. Call `vault_sessions` to check existing title/summary
+  2. If missing or stale, review the prompt batches you just processed —
+     use the user_prompt and response_summary from those batches as
+     your primary source for the title and summary
+  3. Call `vault_update_session` with BOTH title and summary
+
+  Title: describes WHAT WAS ACCOMPLISHED (under 80 chars, sentence case).
+  Synthesize from the full arc of batches, not just the first prompt.
+  NEVER use file paths, directory names, or the user's first message.
+  Summary: 2-4 sentences — rich in detail (files, tools, outcomes).
+
+  ## Phase 4 — Report (budget: 1 turn)
+
+  Call `vault_report` with action "extract":
+  - Batches processed: N
+  - Spores created: N (by type)
+  - Sessions updated: N
+
+toolOverrides:
+  - vault_unprocessed
+  - vault_spores
+  - vault_sessions
+  - vault_search_fts
+  - vault_search_semantic
+  - vault_state
+  - vault_create_spore
+  - vault_resolve_spore
+  - vault_update_session
+  - vault_mark_processed
+  - vault_set_state
+  - vault_report