@goondocks/myco 0.6.4 → 0.9.0

package/dist/chunk-OXZSXYAT.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/db/queries/batches.ts","../src/utils/error-message.ts","../src/db/queries/turns.ts","../src/db/queries/runs.ts","../src/db/queries/reports.ts","../src/db/queries/graph-edges.ts","../src/db/queries/lineage.ts","../src/db/queries/entities.ts","../src/db/queries/digest-extracts.ts"],"sourcesContent":["/**\n * Prompt batch CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of unprocessed batches returned when no limit given. */\nconst DEFAULT_UNPROCESSED_LIMIT = 100;\n\n/** Default number of batches returned by listBatchesBySession when no limit given. */\nexport const BATCHES_DEFAULT_LIMIT = 200;\n\n/** Batch status value when a batch is closed normally. */\nconst STATUS_COMPLETED = 'completed';\n\n/** Default batch status for new batches. */\nconst DEFAULT_STATUS = 'active';\n\n/** Default activity count for new batches. */\nconst DEFAULT_ACTIVITY_COUNT = 0;\n\n/** Default processed flag for new batches. */\nconst DEFAULT_PROCESSED = 0;\n\n/** Processed flag value indicating a batch has been processed. */\nconst PROCESSED_FLAG = 1;\n\n/** Number of characters used for prompt prefix matching. */\nconst PROMPT_PREFIX_MATCH_CHARS = 60;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Filter options for `listBatchesBySession`. */\nexport interface ListBatchesBySessionOptions {\n  limit?: number;\n  offset?: number;\n}\n\n/** Fields required (or optional) when inserting a prompt batch. */\nexport interface BatchInsert {\n  session_id: string;\n  created_at: number;\n  prompt_number?: number | null;\n  user_prompt?: string | null;\n  response_summary?: string | null;\n  classification?: string | null;\n  started_at?: number | null;\n  ended_at?: number | null;\n  status?: string;\n  activity_count?: number;\n  processed?: number;\n  content_hash?: string | null;\n}\n\n/** Row shape returned from batch queries. */\nexport interface BatchRow {\n  id: number;\n  session_id: string;\n  prompt_number: number | null;\n  user_prompt: string | null;\n  response_summary: string | null;\n  classification: string | null;\n  started_at: number | null;\n  ended_at: number | null;\n  status: string;\n  activity_count: number;\n  processed: number;\n  content_hash: string | null;\n  created_at: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst BATCH_COLUMNS = [\n  'id',\n  'session_id',\n  'prompt_number',\n  'user_prompt',\n  'response_summary',\n  'classification',\n  'started_at',\n  'ended_at',\n  'status',\n  'activity_count',\n  'processed',\n  'content_hash',\n  'created_at',\n] as const;\n\nconst SELECT_COLUMNS = BATCH_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed BatchRow. */\nfunction toBatchRow(row: Record<string, unknown>): BatchRow {\n  return {\n    id: row.id as number,\n    session_id: row.session_id as string,\n    prompt_number: (row.prompt_number as number) ?? null,\n    user_prompt: (row.user_prompt as string) ?? null,\n    response_summary: (row.response_summary as string) ?? null,\n    classification: (row.classification as string) ?? null,\n    started_at: (row.started_at as number) ?? null,\n    ended_at: (row.ended_at as number) ?? null,\n    status: row.status as string,\n    activity_count: row.activity_count as number,\n    processed: row.processed as number,\n    content_hash: (row.content_hash as string) ?? null,\n    created_at: row.created_at as number,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new prompt batch.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n * FTS5 index is kept in sync via a follow-up INSERT into prompt_batches_fts.\n */\nexport function insertBatch(data: BatchInsert): BatchRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO prompt_batches (\n       session_id, prompt_number, user_prompt, response_summary,\n       classification, started_at, ended_at, status,\n       activity_count, processed, content_hash, created_at\n     ) VALUES (\n       ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?, ?, ?\n     )`,\n  ).run(\n    data.session_id,\n    data.prompt_number ?? null,\n    data.user_prompt ?? null,\n    data.response_summary ?? null,\n    data.classification ?? null,\n    data.started_at ?? null,\n    data.ended_at ?? null,\n    data.status ?? DEFAULT_STATUS,\n    data.activity_count ?? DEFAULT_ACTIVITY_COUNT,\n    data.processed ?? DEFAULT_PROCESSED,\n    data.content_hash ?? null,\n    data.created_at,\n  );\n\n  const batchId = Number(info.lastInsertRowid);\n\n  // FTS5 sync\n  const userPrompt = data.user_prompt ?? null;\n  if (userPrompt) {\n    db.prepare('INSERT INTO prompt_batches_fts(rowid, user_prompt) VALUES (?, ?)').run(batchId, userPrompt);\n  }\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(batchId) as Record<string, unknown>,\n  );\n}\n\n/**\n * Close a batch — set status to 'completed' and record the end time.\n *\n * @returns the updated row, or null if the batch does not exist.\n */\nexport function closeBatch(\n  id: number,\n  endedAt: number,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET status = ?, ended_at = ?\n     WHERE id = ?`,\n  ).run(STATUS_COMPLETED, endedAt, id);\n\n  if (info.changes === 0) return null;\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Populate response_summary on batches from transcript turns.\n *\n * Matches transcript turns (ordered by position) to batches (ordered by id ASC).\n * This is resilient to prompt_number duplicates caused by daemon restarts.\n * Only updates batches that don't already have a response_summary.\n *\n * @param sessionId — the session to update\n * @param responses — array of { response } ordered by turn position (1-indexed)\n */\nexport function populateBatchResponses(\n  sessionId: string,\n  responses: Array<{ turnIndex: number; response: string }>,\n): void {\n  const db = getDatabase();\n\n  // Get all batches for this session ordered by id (insertion order = true order)\n  const batches = db.prepare(\n    `SELECT id FROM prompt_batches WHERE session_id = ? ORDER BY id ASC`,\n  ).all(sessionId) as Array<{ id: number }>;\n\n  // Map each response to the batch at the same position\n  for (const { turnIndex, response } of responses) {\n    const batchIndex = turnIndex - 1; // turns are 1-indexed\n    if (batchIndex >= 0 && batchIndex < batches.length) {\n      const batchId = batches[batchIndex].id;\n      db.prepare(\n        `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`,\n      ).run(response, batchId);\n    }\n  }\n}\n\n/**\n * Get unprocessed batches, ordered by id ASC (insertion order).\n *\n * Supports cursor-based pagination via `after_id` and a `limit` cap.\n */\nexport function getUnprocessedBatches(\n  options: { after_id?: number; limit?: number } = {},\n): BatchRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [`processed = ?`];\n  const params: unknown[] = [DEFAULT_PROCESSED];\n\n  if (options.after_id !== undefined) {\n    conditions.push(`id > ?`);\n    params.push(options.after_id);\n  }\n\n  const limit = options.limit ?? DEFAULT_UNPROCESSED_LIMIT;\n  params.push(limit);\n\n  const where = conditions.join(' AND ');\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM prompt_batches\n     WHERE ${where}\n     ORDER BY id ASC\n     LIMIT ?`,\n  ).all(...params) as Record<string, unknown>[];\n\n  return rows.map(toBatchRow);\n}\n\n/**\n * Increment the activity_count for a batch by 1.\n *\n * @returns the updated row, or null if the batch does not exist.\n */\nexport function incrementActivityCount(\n  id: number,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET activity_count = activity_count + 1\n     WHERE id = ?`,\n  ).run(id);\n\n  if (info.changes === 0) return null;\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Mark a batch as processed (processed = 1).\n *\n * @returns the updated row, or null if the batch does not exist.\n */\nexport function markBatchProcessed(\n  id: number,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET processed = ?\n     WHERE id = ?`,\n  ).run(PROCESSED_FLAG, id);\n\n  if (info.changes === 0) return null;\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Get a batch's ID by session and prompt number.\n * Used to link attachments to their prompt batch at stop time.\n */\nexport function getBatchIdByPromptNumber(\n  sessionId: string,\n  promptNumber: number,\n): number | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT id FROM prompt_batches WHERE session_id = ? AND prompt_number = ? LIMIT 1`,\n  ).get(sessionId, promptNumber) as { id: number } | undefined;\n\n  return row ? row.id : null;\n}\n\n/**\n * Find a batch by matching the start of its user_prompt text.\n * Used for attachment matching after transcript compaction where turn indices no longer\n * align with prompt_numbers.\n */\nexport function findBatchByPromptPrefix(\n  sessionId: string,\n  promptPrefix: string,\n): { id: number; prompt_number: number } | null {\n  const db = getDatabase();\n  // Match first N chars — enough to be unique, tolerant of minor differences\n  const prefix = promptPrefix.slice(0, PROMPT_PREFIX_MATCH_CHARS);\n  const row = db.prepare(\n    `SELECT id, prompt_number FROM prompt_batches\n     WHERE session_id = ? AND user_prompt LIKE ? || '%'\n     LIMIT 1`,\n  ).get(sessionId, prefix) as { id: number; prompt_number: number } | undefined;\n  return row ?? null;\n}\n\n/** Fields required when inserting a batch statelessly (prompt_number derived from DB). */\nexport interface StatelessBatchInsert {\n  session_id: string;\n  created_at: number;\n  user_prompt?: string | null;\n  started_at?: number | null;\n  status?: string;\n}\n\n/**\n * Insert a new prompt batch with prompt_number derived from an inline subquery.\n *\n * The prompt_number is set to `COALESCE(MAX(prompt_number), 0) + 1` for the\n * session, so the caller never needs a separate SELECT. This makes the insert\n * stateless — no in-memory counter required.\n *\n * FTS5 index is kept in sync via a follow-up INSERT into prompt_batches_fts.\n */\nexport function insertBatchStateless(data: StatelessBatchInsert): BatchRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO prompt_batches (\n       session_id, prompt_number, user_prompt, response_summary,\n       classification, started_at, ended_at, status,\n       activity_count, processed, content_hash, created_at\n     ) VALUES (\n       ?,\n       (SELECT COALESCE(MAX(prompt_number), 0) + 1 FROM prompt_batches WHERE session_id = ?),\n       ?, NULL,\n       NULL, ?, NULL, ?,\n       ?, ?, NULL, ?\n     )`,\n  ).run(\n    data.session_id,\n    data.session_id,\n    data.user_prompt ?? null,\n    data.started_at ?? null,\n    data.status ?? DEFAULT_STATUS,\n    DEFAULT_ACTIVITY_COUNT,\n    DEFAULT_PROCESSED,\n    data.created_at,\n  );\n\n  const batchId = Number(info.lastInsertRowid);\n\n  // FTS5 sync\n  const userPrompt = data.user_prompt ?? null;\n  if (userPrompt) {\n    db.prepare('INSERT INTO prompt_batches_fts(rowid, user_prompt) VALUES (?, ?)').run(batchId, userPrompt);\n  }\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(batchId) as Record<string, unknown>,\n  );\n}\n\n/**\n * Close all open batches for a session — blind UPDATE, no prior SELECT needed.\n *\n * Sets `status = 'completed'` and `ended_at` on every batch that has no\n * `ended_at` value yet. Returns the number of batches closed.\n */\nexport function closeOpenBatches(\n  sessionId: string,\n  endedAt: number,\n): number {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET status = ?, ended_at = ?\n     WHERE session_id = ? AND ended_at IS NULL`,\n  ).run(STATUS_COMPLETED, endedAt, sessionId);\n\n  return info.changes;\n}\n\n/**\n * Set response_summary on a batch if it doesn't already have one.\n *\n * Idempotent — only updates NULL response_summary.\n */\nexport function setResponseSummary(\n  batchId: number,\n  summary: string,\n): void {\n  const db = getDatabase();\n  db.prepare(\n    `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`,\n  ).run(summary, batchId);\n}\n\n/**\n * Get the most recent batch for a session (by id DESC), regardless of status.\n *\n * Used by processStopEvent to attach the AI response and images to the\n * correct batch without positional turn mapping.\n */\nexport function getLatestBatch(\n  sessionId: string,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM prompt_batches\n     WHERE session_id = ?\n     ORDER BY id DESC LIMIT 1`,\n  ).get(sessionId) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toBatchRow(row);\n}\n\nexport function listBatchesBySession(\n  sessionId: string,\n  options: ListBatchesBySessionOptions = {},\n): BatchRow[] {\n  const db = getDatabase();\n\n  const limit = options.limit ?? BATCHES_DEFAULT_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM prompt_batches\n     WHERE session_id = ?\n     ORDER BY prompt_number ASC\n     LIMIT ?\n     OFFSET ?`,\n  ).all(sessionId, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toBatchRow);\n}\n","/**\n * Extract a human-readable error message from an unknown thrown value.\n *\n * Handles Error instances, strings, and arbitrary objects. Never throws.\n */\nexport function errorMessage(err: unknown): string {\n  if (err instanceof Error) return err.message || err.constructor.name || 'Error';\n  if (typeof err === 'string') return err || 'Empty string error';\n  try { return JSON.stringify(err); } catch { return 'Unserializable error'; }\n}\n","/**\n * Agent turn CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a turn. */\nexport interface TurnInsert {\n  run_id: string;\n  agent_id: string;\n  turn_number: number;\n  tool_name: string;\n  tool_input?: string | null;\n  tool_output_summary?: string | null;\n  started_at?: number | null;\n  completed_at?: number | null;\n}\n\n/** Row shape returned from agent_turns queries (all columns). */\nexport interface TurnRow {\n  id: number;\n  run_id: string;\n  agent_id: string;\n  turn_number: number;\n  tool_name: string;\n  tool_input: string | null;\n  tool_output_summary: string | null;\n  started_at: number | null;\n  completed_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst TURN_COLUMNS = [\n  'id',\n  'run_id',\n  'agent_id',\n  'turn_number',\n  'tool_name',\n  'tool_input',\n  'tool_output_summary',\n  'started_at',\n  'completed_at',\n] as const;\n\nconst SELECT_COLUMNS = TURN_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed TurnRow. */\nfunction toTurnRow(row: Record<string, unknown>): TurnRow {\n  return {\n    id: row.id as number,\n    run_id: row.run_id as string,\n    agent_id: row.agent_id as string,\n    turn_number: row.turn_number as number,\n    tool_name: row.tool_name as string,\n    tool_input: (row.tool_input as string) ?? null,\n    tool_output_summary: (row.tool_output_summary as string) ?? null,\n    started_at: (row.started_at as number) ?? null,\n    completed_at: (row.completed_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent turn.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n */\nexport function insertTurn(data: TurnInsert): TurnRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO agent_turns (\n       run_id, agent_id, turn_number, tool_name,\n       tool_input, tool_output_summary, started_at, completed_at\n     ) VALUES (\n       ?, ?, ?, ?,\n       ?, ?, ?, ?\n     )`,\n  ).run(\n    data.run_id,\n    data.agent_id,\n    data.turn_number,\n    data.tool_name,\n    data.tool_input ?? null,\n    data.tool_output_summary ?? null,\n    data.started_at ?? null,\n    data.completed_at ?? null,\n  );\n\n  const turnId = Number(info.lastInsertRowid);\n\n  return toTurnRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_turns WHERE id = ?`).get(turnId) as Record<string, unknown>,\n  );\n}\n\n/**\n * List all turns for a specific run, ordered by turn_number ASC.\n */\nexport function listTurns(runId: string): TurnRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_turns\n     WHERE run_id = ?\n     ORDER BY turn_number ASC`,\n  ).all(runId) as Record<string, unknown>[];\n\n  return rows.map(toTurnRow);\n}\n\n/**\n * List all agent turns for a run, ordered by turn_number ASC.\n *\n * Alias for `listTurns` with an explicit \"by run\" naming convention used\n * by the dashboard API layer.\n */\nexport function listTurnsByRun(runId: string): TurnRow[] {\n  return listTurns(runId);\n}\n","/**\n * Agent run CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of runs returned by listRuns when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Default run status for new runs. */\nconst DEFAULT_STATUS = 'pending';\n\n/** Run status indicating the run is currently executing. */\nexport const STATUS_RUNNING = 'running';\n\n/** Run status for a successfully completed run. */\nexport const STATUS_COMPLETED = 'completed';\n\n/** Run status for a run that encountered an error. */\nexport const STATUS_FAILED = 'failed';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a run. */\nexport interface RunInsert {\n  id: string;\n  agent_id: string;\n  task?: string | null;\n  instruction?: string | null;\n  status?: string;\n  started_at?: number | null;\n  completed_at?: number | null;\n  tokens_used?: number | null;\n  cost_usd?: number | null;\n  actions_taken?: string | null;\n  error?: string | null;\n}\n\n/** Row shape returned from agent_runs queries (all columns). */\nexport interface RunRow {\n  id: string;\n  agent_id: string;\n  task: string | null;\n  instruction: string | null;\n  status: string;\n  started_at: number | null;\n  completed_at: number | null;\n  tokens_used: number | null;\n  cost_usd: number | null;\n  actions_taken: string | null;\n  error: string | null;\n}\n\n/** Completion data passed to updateRunStatus. */\nexport interface RunCompletion {\n  completed_at?: number;\n  tokens_used?: number;\n  cost_usd?: number;\n  actions_taken?: string;\n  error?: string;\n}\n\n/** Filter options for `listRuns`. */\nexport interface ListRunsOptions {\n  limit?: number;\n  offset?: number;\n  agent_id?: string;\n  status?: string;\n  task?: string;\n  search?: string;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst RUN_COLUMNS = [\n  'id',\n  'agent_id',\n  'task',\n  'instruction',\n  'status',\n  'started_at',\n  'completed_at',\n  'tokens_used',\n  'cost_usd',\n  'actions_taken',\n  'error',\n] as const;\n\nconst SELECT_COLUMNS = RUN_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed RunRow. */\nfunction toRunRow(row: Record<string, unknown>): RunRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    task: (row.task as string) ?? null,\n    instruction: (row.instruction as string) ?? null,\n    status: row.status as string,\n    started_at: (row.started_at as number) ?? null,\n    completed_at: (row.completed_at as number) ?? null,\n    tokens_used: (row.tokens_used as number) ?? null,\n    cost_usd: (row.cost_usd as number) ?? null,\n    actions_taken: (row.actions_taken as string) ?? null,\n    error: (row.error as string) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent run.\n */\nexport function insertRun(data: RunInsert): RunRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO agent_runs (\n       id, agent_id, task, instruction, status,\n       started_at, completed_at, tokens_used, cost_usd,\n       actions_taken, error\n     ) VALUES (\n       ?, ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?\n     )`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.task ?? null,\n    data.instruction ?? null,\n    data.status ?? DEFAULT_STATUS,\n    data.started_at ?? null,\n    data.completed_at ?? null,\n    data.tokens_used ?? null,\n    data.cost_usd ?? null,\n    data.actions_taken ?? null,\n    data.error ?? null,\n  );\n\n  return toRunRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Retrieve a single run by id.\n *\n * @returns the run row, or null if not found.\n */\nexport function getRun(id: string): RunRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toRunRow(row);\n}\n\n/** Build a WHERE clause and params array from ListRunsOptions filter fields. */\nfunction buildRunsWhere(\n  options: Omit<ListRunsOptions, 'limit' | 'offset'>,\n): { where: string; params: unknown[] } {\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  }\n  if (options.task !== undefined) {\n    conditions.push(`task = ?`);\n    params.push(options.task);\n  }\n  if (options.search !== undefined && options.search.length > 0) {\n    conditions.push(`task LIKE ?`);\n    params.push(`%${options.search}%`);\n  }\n\n  return {\n    where: conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '',\n    params,\n  };\n}\n\n/**\n * List runs with optional filters, ordered by started_at DESC (nulls last).\n */\nexport function listRuns(\n  options: ListRunsOptions = {},\n): RunRow[] {\n  const db = getDatabase();\n  const { where, params } = buildRunsWhere(options);\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_runs\n     ${where}\n     ORDER BY started_at DESC NULLS LAST\n     LIMIT ?\n     OFFSET ?`,\n  ).all(...params, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toRunRow);\n}\n\n/**\n * Count runs matching the given filters (no limit/offset).\n */\nexport function countRuns(\n  options: Omit<ListRunsOptions, 'limit' | 'offset'> = {},\n): number {\n  const db = getDatabase();\n  const { where, params } = buildRunsWhere(options);\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM agent_runs ${where}`,\n  ).get(...params) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Update a run's status, with optional completion data.\n *\n * @returns the updated row, or null if the run does not exist.\n */\nexport function updateRunStatus(\n  id: string,\n  status: string,\n  completion?: RunCompletion,\n): RunRow | null {\n  const db = getDatabase();\n\n  const setClauses: string[] = ['status = ?'];\n  const params: unknown[] = [status];\n\n  if (completion?.completed_at !== undefined) {\n    setClauses.push(`completed_at = ?`);\n    params.push(completion.completed_at);\n  }\n\n  if (completion?.tokens_used !== undefined) {\n    setClauses.push(`tokens_used = ?`);\n    params.push(completion.tokens_used);\n  }\n\n  if (completion?.cost_usd !== undefined) {\n    setClauses.push(`cost_usd = ?`);\n    params.push(completion.cost_usd);\n  }\n\n  if (completion?.actions_taken !== undefined) {\n    setClauses.push(`actions_taken = ?`);\n    params.push(completion.actions_taken);\n  }\n\n  if (completion?.error !== undefined) {\n    setClauses.push(`error = ?`);\n    params.push(completion.error);\n  }\n\n  params.push(id);\n\n  const info = db.prepare(\n    `UPDATE agent_runs\n     SET ${setClauses.join(', ')}\n     WHERE id = ?`,\n  ).run(...params);\n\n  if (info.changes === 0) return null;\n\n  return toRunRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Get the currently running run for an agent, if any.\n *\n * @returns the running run row, or null if no run is active.\n */\nexport function getRunningRun(\n  agentId: string,\n): RunRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_runs\n     WHERE agent_id = ? AND status = ?\n     ORDER BY started_at DESC NULLS LAST\n     LIMIT 1`,\n  ).get(agentId, STATUS_RUNNING) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toRunRow(row);\n}\n","/**\n * Agent report CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of reports returned by list queries when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a report. */\nexport interface ReportInsert {\n  run_id: string;\n  agent_id: string;\n  action: string;\n  summary: string;\n  details?: string | null;\n  created_at: number;\n}\n\n/** Row shape returned from agent_reports queries (all columns). */\nexport interface ReportRow {\n  id: number;\n  run_id: string;\n  agent_id: string;\n  action: string;\n  summary: string;\n  details: string | null;\n  created_at: number;\n}\n\n/** Filter options for `listReportsByAgent`. */\nexport interface ListReportsByAgentOptions {\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst REPORT_COLUMNS = [\n  'id',\n  'run_id',\n  'agent_id',\n  'action',\n  'summary',\n  'details',\n  'created_at',\n] as const;\n\nconst SELECT_COLUMNS = REPORT_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed ReportRow. */\nfunction toReportRow(row: Record<string, unknown>): ReportRow {\n  return {\n    id: row.id as number,\n    run_id: row.run_id as string,\n    agent_id: row.agent_id as string,\n    action: row.action as string,\n    summary: row.summary as string,\n    details: (row.details as string) ?? null,\n    created_at: row.created_at as number,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent report.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n */\nexport function insertReport(data: ReportInsert): ReportRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO agent_reports (\n       run_id, agent_id, action, summary, details, created_at\n     ) VALUES (\n       ?, ?, ?, ?, ?, ?\n     )`,\n  ).run(\n    data.run_id,\n    data.agent_id,\n    data.action,\n    data.summary,\n    data.details ?? null,\n    data.created_at,\n  );\n\n  const reportId = Number(info.lastInsertRowid);\n\n  return toReportRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_reports WHERE id = ?`).get(reportId) as Record<string, unknown>,\n  );\n}\n\n/**\n * List all reports for a specific run, ordered by created_at ASC.\n */\nexport function listReports(runId: string): ReportRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_reports\n     WHERE run_id = ?\n     ORDER BY created_at ASC`,\n  ).all(runId) as Record<string, unknown>[];\n\n  return rows.map(toReportRow);\n}\n\n/**\n * List reports by agent, ordered by created_at DESC.\n */\nexport function listReportsByAgent(\n  agentId: string,\n  options: ListReportsByAgentOptions = {},\n): ReportRow[] {\n  const db = getDatabase();\n\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_reports\n     WHERE agent_id = ?\n     ORDER BY created_at DESC\n     LIMIT ?`,\n  ).all(agentId, limit) as Record<string, unknown>[];\n\n  return rows.map(toReportRow);\n}\n","/**\n * Graph edge CRUD query helpers.\n *\n * Unlike the `edges` table (which has FK constraints to entities), `graph_edges`\n * supports edges between any node types (session, batch, spore, entity).\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport crypto from 'node:crypto';\nimport { getDatabase } from '@myco/db/client.js';\nimport { QUERY_DEFAULT_LIST_LIMIT, GRAPH_EDGE_DEFAULT_CONFIDENCE } from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default BFS traversal depth. */\nconst DEFAULT_BFS_DEPTH = 2;\n\n/** Maximum BFS traversal depth (capped for performance). */\nconst MAX_BFS_DEPTH = 5;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Valid node types in the graph. */\nexport type GraphNodeType = 'session' | 'batch' | 'spore' | 'entity';\n\n/** Lineage edge types (auto-created by daemon, no LLM). */\nexport type LineageEdgeType = 'FROM_SESSION' | 'EXTRACTED_FROM' | 'DERIVED_FROM' | 'HAS_BATCH';\n\n/** Semantic edge types (created by intelligence agent, LLM-driven). */\nexport type SemanticEdgeType = 'RELATES_TO' | 'SUPERSEDED_BY' | 'REFERENCES' | 'DEPENDS_ON' | 'AFFECTS';\n\n/** All valid graph edge types. */\nexport type GraphEdgeType = LineageEdgeType | SemanticEdgeType;\n\n/** Fields required (or optional) when inserting a graph edge. */\nexport interface GraphEdgeInsert {\n  agent_id: string;\n  source_id: string;\n  source_type: GraphNodeType;\n  target_id: string;\n  target_type: GraphNodeType;\n  type: GraphEdgeType;\n  created_at: number;\n  session_id?: string;\n  confidence?: number;\n  properties?: string;\n}\n\n/** Row shape returned from graph edge queries. */\nexport interface GraphEdgeRow {\n  id: string;\n  agent_id: string;\n  source_id: string;\n  source_type: string;\n  target_id: string;\n  target_type: string;\n  type: string;\n  session_id: string | null;\n  confidence: number;\n  properties: string | null;\n  created_at: number;\n}\n\n/** Filter options for `listGraphEdges`. */\nexport interface ListGraphEdgesOptions {\n  sourceId?: string;\n  targetId?: string;\n  type?: string;\n  agentId?: string;\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst GRAPH_EDGE_COLUMNS = [\n  'id',\n  'agent_id',\n  'source_id',\n  'source_type',\n  'target_id',\n  'target_type',\n  'type',\n  'session_id',\n  'confidence',\n  'properties',\n  'created_at',\n] as const;\n\nconst SELECT_COLUMNS = GRAPH_EDGE_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed GraphEdgeRow. */\nfunction toGraphEdgeRow(row: Record<string, unknown>): GraphEdgeRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    source_id: row.source_id as string,\n    source_type: row.source_type as string,\n    target_id: row.target_id as string,\n    target_type: row.target_type as string,\n    type: row.type as string,\n    session_id: (row.session_id as string) ?? null,\n    confidence: row.confidence as number,\n    properties: (row.properties as string) ?? null,\n    created_at: row.created_at as number,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new graph edge.\n *\n * Generates a UUID id automatically.\n */\nexport function insertGraphEdge(data: GraphEdgeInsert): GraphEdgeRow {\n  const db = getDatabase();\n  const id = crypto.randomUUID();\n\n  db.prepare(\n    `INSERT INTO graph_edges (\n       id, agent_id, source_id, source_type, target_id, target_type,\n       type, session_id, confidence, properties, created_at\n     ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`,\n  ).run(\n    id,\n    data.agent_id,\n    data.source_id,\n    data.source_type,\n    data.target_id,\n    data.target_type,\n    data.type,\n    data.session_id ?? null,\n    data.confidence ?? GRAPH_EDGE_DEFAULT_CONFIDENCE,\n    data.properties ?? null,\n    data.created_at,\n  );\n\n  return toGraphEdgeRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM graph_edges WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * List graph edges with optional filters, ordered by created_at DESC.\n */\nexport function listGraphEdges(\n  options: ListGraphEdgesOptions = {},\n): GraphEdgeRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.sourceId !== undefined) {\n    conditions.push(`source_id = ?`);\n    params.push(options.sourceId);\n  }\n\n  if (options.targetId !== undefined) {\n    conditions.push(`target_id = ?`);\n    params.push(options.targetId);\n  }\n\n  if (options.type !== undefined) {\n    conditions.push(`type = ?`);\n    params.push(options.type);\n  }\n\n  if (options.agentId !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agentId);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? QUERY_DEFAULT_LIST_LIMIT;\n\n  params.push(limit);\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM graph_edges\n     ${where}\n     ORDER BY created_at DESC\n     LIMIT ?`,\n  ).all(...params) as Record<string, unknown>[];\n\n  return rows.map(toGraphEdgeRow);\n}\n\n/**\n * BFS traversal from a node across graph edges.\n *\n * Returns all edges reachable within `depth` hops from the starting node.\n *\n * @param nodeId   - The starting node ID.\n * @param nodeType - The starting node type.\n * @param options  - Optional depth limit (default 2, max 5).\n */\nexport function getGraphForNode(\n  nodeId: string,\n  nodeType: GraphNodeType,\n  options?: { depth?: number },\n): { edges: GraphEdgeRow[] } {\n  const db = getDatabase();\n  const depth = Math.min(Math.max(options?.depth ?? DEFAULT_BFS_DEPTH, 1), MAX_BFS_DEPTH);\n\n  const seenEdgeIds = new Set<string>();\n  const collectedEdges: GraphEdgeRow[] = [];\n  const visited = new Set<string>([`${nodeType}:${nodeId}`]);\n  let frontier = new Set<string>([nodeId]);\n\n  for (let hop = 0; hop < depth; hop++) {\n    if (frontier.size === 0) break;\n\n    const frontierArray = Array.from(frontier);\n    const placeholders = frontierArray.map(() => `?`).join(', ');\n\n    const rows = db.prepare(\n      `SELECT ${SELECT_COLUMNS}\n       FROM graph_edges\n       WHERE source_id IN (${placeholders}) OR target_id IN (${placeholders})`,\n    ).all(...frontierArray, ...frontierArray) as Record<string, unknown>[];\n\n    const nextFrontier = new Set<string>();\n\n    for (const row of rows) {\n      const edge = toGraphEdgeRow(row);\n      if (!seenEdgeIds.has(edge.id)) {\n        seenEdgeIds.add(edge.id);\n        collectedEdges.push(edge);\n      }\n      const sourceKey = `${edge.source_type}:${edge.source_id}`;\n      const targetKey = `${edge.target_type}:${edge.target_id}`;\n      if (!visited.has(sourceKey)) {\n        visited.add(sourceKey);\n        nextFrontier.add(edge.source_id);\n      }\n      if (!visited.has(targetKey)) {\n        visited.add(targetKey);\n        nextFrontier.add(edge.target_id);\n      }\n    }\n\n    frontier = nextFrontier;\n  }\n\n  return { edges: collectedEdges };\n}\n","/**\n * Lineage edge creation helpers.\n *\n * Creates automatic graph edges when spores and batches are inserted.\n * These are structural (no LLM needed) — the daemon layer calls them.\n *\n * Edge types created:\n * - FROM_SESSION: spore -> session (the session it was extracted from)\n * - EXTRACTED_FROM: spore -> batch (the prompt batch it was extracted from)\n * - DERIVED_FROM: wisdom spore -> source spore (consolidation provenance)\n * - HAS_BATCH: session -> batch (prompt batch belongs to session)\n */\n\nimport { insertGraphEdge } from './graph-edges.js';\nimport {\n  EDGE_TYPE_FROM_SESSION,\n  EDGE_TYPE_EXTRACTED_FROM,\n  EDGE_TYPE_DERIVED_FROM,\n  EDGE_TYPE_HAS_BATCH,\n} from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Spore lineage\n// ---------------------------------------------------------------------------\n\n/** Create lineage edges for a newly inserted spore. */\nexport function createSporeLineage(spore: {\n  id: string;\n  agent_id: string;\n  session_id?: string | null;\n  prompt_batch_id?: number | null;\n  observation_type?: string;\n  properties?: string | null;\n  created_at: number;\n}): void {\n  if (spore.session_id) {\n    insertGraphEdge({\n      agent_id: spore.agent_id,\n      source_id: spore.id,\n      source_type: 'spore',\n      target_id: spore.session_id,\n      target_type: 'session',\n      type: EDGE_TYPE_FROM_SESSION,\n      created_at: spore.created_at,\n    });\n  }\n\n  if (spore.prompt_batch_id != null) {\n    insertGraphEdge({\n      agent_id: spore.agent_id,\n      source_id: spore.id,\n      source_type: 'spore',\n      target_id: String(spore.prompt_batch_id),\n      target_type: 'batch',\n      type: EDGE_TYPE_EXTRACTED_FROM,\n      created_at: spore.created_at,\n    });\n  }\n\n  // DERIVED_FROM edges for wisdom spores\n  if (spore.observation_type === 'wisdom' && spore.properties) {\n    try {\n      const props = JSON.parse(spore.properties);\n      if (Array.isArray(props.consolidated_from)) {\n        for (const sourceId of props.consolidated_from) {\n          insertGraphEdge({\n            agent_id: spore.agent_id,\n            source_id: spore.id,\n            source_type: 'spore',\n            target_id: sourceId,\n            target_type: 'spore',\n            type: EDGE_TYPE_DERIVED_FROM,\n            created_at: spore.created_at,\n          });\n        }\n      }\n    } catch { /* ignore malformed properties */ }\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Batch lineage\n// ---------------------------------------------------------------------------\n\n/** Create a HAS_BATCH lineage edge from session to batch. */\nexport function createBatchLineage(\n  agentId: string,\n  sessionId: string,\n  batchId: number,\n  createdAt: number,\n): void {\n  insertGraphEdge({\n    agent_id: agentId,\n    source_id: sessionId,\n    source_type: 'session',\n    target_id: String(batchId),\n    target_type: 'batch',\n    type: EDGE_TYPE_HAS_BATCH,\n    created_at: createdAt,\n  });\n}\n","/**\n * Entity CRUD query helpers for the knowledge graph.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { getGraphForNode, type GraphEdgeRow } from '@myco/db/queries/graph-edges.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of entities returned by listEntities when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting an entity. */\nexport interface EntityInsert {\n  id: string;\n  agent_id: string;\n  type: string;\n  name: string;\n  first_seen: number;\n  last_seen: number;\n  properties?: string | null;\n}\n\n/** Row shape returned from entity queries (all columns). */\nexport interface EntityRow {\n  id: string;\n  agent_id: string;\n  type: string;\n  name: string;\n  properties: string | null;\n  first_seen: number;\n  last_seen: number;\n  status: string;\n}\n\n/** Filter options for `listEntities`. */\nexport interface ListEntitiesOptions {\n  agent_id?: string;\n  type?: string;\n  /** Filter by exact entity name. */\n  name?: string;\n  /** Filter by status (default 'active'). */\n  status?: string;\n  /** Filter by entity_mentions subquery — must be paired with note_type. */\n  mentioned_in?: string;\n  /** Required when mentioned_in is provided. */\n  note_type?: string;\n  limit?: number;\n  offset?: number;\n}\n\n/** Return type for `getEntityWithEdges`. */\nexport interface EntityGraph {\n  center: EntityRow;\n  nodes: EntityRow[];\n  edges: GraphEdgeRow[];\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst ENTITY_COLUMNS = [\n  'id',\n  'agent_id',\n  'type',\n  'name',\n  'properties',\n  'first_seen',\n  'last_seen',\n  'status',\n] as const;\n\nconst SELECT_COLUMNS = ENTITY_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed EntityRow. */\nfunction toEntityRow(row: Record<string, unknown>): EntityRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    type: row.type as string,\n    name: row.name as string,\n    properties: (row.properties as string) ?? null,\n    first_seen: row.first_seen as number,\n    last_seen: row.last_seen as number,\n    status: (row.status as string) ?? 'active',\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert or update an entity. Uses UPSERT on (agent_id, type, name).\n *\n * On conflict, updates properties (if provided) and last_seen.\n */\nexport function insertEntity(data: EntityInsert): EntityRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO entities (id, agent_id, type, name, properties, first_seen, last_seen)\n     VALUES (?, ?, ?, ?, ?, ?, ?)\n     ON CONFLICT (agent_id, type, name) DO UPDATE SET\n       properties = COALESCE(EXCLUDED.properties, entities.properties),\n       last_seen = EXCLUDED.last_seen`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.type,\n    data.name,\n    data.properties ?? null,\n    data.first_seen,\n    data.last_seen,\n  );\n\n  // On conflict, the passed-in id may not be the actual row id. Look up by unique key.\n  return toEntityRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM entities WHERE agent_id = ? AND type = ? AND name = ?`).get(\n      data.agent_id,\n      data.type,\n      data.name,\n    ) as Record<string, unknown>,\n  );\n}\n\n/**\n * Retrieve a single entity by id.\n *\n * @returns the entity row, or null if not found.\n */\nexport function getEntity(id: string): EntityRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM entities WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toEntityRow(row);\n}\n\n/**\n * List entities with optional filters, ordered by last_seen DESC.\n *\n * Defaults to `status = 'active'` — archived entities are excluded unless\n * `status` is explicitly provided. Pass `status: undefined` in options to\n * get only active entities (the default), or set a specific status string.\n *\n * When both `mentioned_in` and `note_type` are provided, filters to entities\n * referenced in a specific note via the entity_mentions subquery.\n */\nexport function listEntities(\n  options: ListEntitiesOptions = {},\n): EntityRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n\n  if (options.type !== undefined) {\n    conditions.push(`type = ?`);\n    params.push(options.type);\n  }\n\n  if (options.name !== undefined) {\n    conditions.push(`name = ?`);\n    params.push(options.name);\n  }\n\n  // Default: only show active entities (status column added in v5)\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  } else {\n    conditions.push(`status = ?`);\n    params.push('active');\n  }\n\n  if (options.mentioned_in !== undefined && options.note_type !== undefined) {\n    conditions.push(\n      `id IN (SELECT entity_id FROM entity_mentions WHERE note_id = ? AND note_type = ?)`,\n    );\n    params.push(options.mentioned_in);\n    params.push(options.note_type);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? 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package/dist/chunk-PB6TOLRQ.js

@@ -0,0 +1,35 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  findPackageRoot
+} from "./chunk-LPUQPDC2.js";
+
+// src/version.ts
+import fs from "fs";
+import path from "path";
+import { fileURLToPath } from "url";
+var cached;
+function getPluginVersion() {
+  if (cached) return cached;
+  if (true) {
+    cached = "0.9.0";
+    return cached;
+  }
+  const root = findPackageRoot(path.dirname(fileURLToPath(import.meta.url)));
+  if (root) {
+    try {
+      const pkg = JSON.parse(fs.readFileSync(path.join(root, "package.json"), "utf-8"));
+      if (pkg.version) {
+        cached = pkg.version;
+        return cached;
+      }
+    } catch {
+    }
+  }
+  cached = "0.0.0";
+  return cached;
+}
+
+export {
+  getPluginVersion
+};
+//# sourceMappingURL=chunk-PB6TOLRQ.js.map

package/dist/chunk-PB6TOLRQ.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/version.ts"],"sourcesContent":["/**\n * Plugin version — injected at build time by tsup define.\n * Falls back to reading package.json for unbundled execution (tests, tsx).\n */\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { findPackageRoot } from './utils/find-package-root.js';\n\ndeclare const __MYCO_VERSION__: string;\n\nlet cached: string | undefined;\n\nexport function getPluginVersion(): string {\n  if (cached) return cached;\n\n  // Primary: build-time injected constant\n  if (typeof __MYCO_VERSION__ !== 'undefined') {\n    cached = __MYCO_VERSION__;\n    return cached;\n  }\n\n  // Fallback: read package.json from package root (unbundled/test execution)\n  const root = findPackageRoot(path.dirname(fileURLToPath(import.meta.url)));\n  if (root) {\n    try {\n      const pkg = JSON.parse(fs.readFileSync(path.join(root, 'package.json'), 'utf-8')) as { version?: string };\n      if (pkg.version) { cached = pkg.version; return cached; }\n    } catch { /* continue */ }\n  }\n\n  cached = '0.0.0';\n  return cached;\n}\n"],"mappings":";;;;;;AAIA,OAAO,QAAQ;AACf,OAAO,UAAU;AACjB,SAAS,qBAAqB;AAK9B,IAAI;AAEG,SAAS,mBAA2B;AACzC,MAAI,OAAQ,QAAO;AAGnB,MAAI,MAAyC;AAC3C,aAAS;AACT,WAAO;AAAA,EACT;AAGA,QAAM,OAAO,gBAAgB,KAAK,QAAQ,cAAc,YAAY,GAAG,CAAC,CAAC;AACzE,MAAI,MAAM;AACR,QAAI;AACF,YAAM,MAAM,KAAK,MAAM,GAAG,aAAa,KAAK,KAAK,MAAM,cAAc,GAAG,OAAO,CAAC;AAChF,UAAI,IAAI,SAAS;AAAE,iBAAS,IAAI;AAAS,eAAO;AAAA,MAAQ;AAAA,IAC1D,QAAQ;AAAA,IAAiB;AAAA,EAC3B;AAEA,WAAS;AACT,SAAO;AACT;","names":[]}

package/dist/chunk-PT5IC642.js

@@ -0,0 +1,162 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  getDatabase
+} from "./chunk-MYX5NCRH.js";
+import {
+  SEARCH_PREVIEW_CHARS,
+  SEARCH_RESULTS_DEFAULT_LIMIT
+} from "./chunk-5VZ52A4T.js";
+
+// src/db/queries/search.ts
+function fullTextSearch(query, options = {}) {
+  const db = getDatabase();
+  const limit = options.limit ?? SEARCH_RESULTS_DEFAULT_LIMIT;
+  const typeFilter = options.type;
+  const results = [];
+  if (typeFilter === void 0 || typeFilter === "prompt_batch") {
+    const batchRows = db.prepare(
+      `SELECT pb.id, pb.prompt_number, pb.session_id,
+              substr(COALESCE(pb.user_prompt, ''), 1, ?) AS preview,
+              fts.rank
+       FROM prompt_batches_fts fts
+       JOIN prompt_batches pb ON pb.id = fts.rowid
+       WHERE prompt_batches_fts MATCH ?
+       ORDER BY fts.rank
+       LIMIT ?`
+    ).all(SEARCH_PREVIEW_CHARS, query, limit);
+    for (const row of batchRows) {
+      results.push({
+        id: String(row.id),
+        type: "prompt_batch",
+        title: row.prompt_number != null ? `Batch #${row.prompt_number}` : `Batch ${row.id}`,
+        preview: row.preview,
+        score: Math.abs(row.rank),
+        ...row.session_id != null ? { session_id: row.session_id } : {}
+      });
+    }
+  }
+  if (typeFilter === void 0 || typeFilter === "activity") {
+    const activityRows = db.prepare(
+      `SELECT a.id, a.tool_name, a.tool_input, a.file_path, a.session_id,
+              fts.rank
+       FROM activities_fts fts
+       JOIN activities a ON a.id = fts.rowid
+       WHERE activities_fts MATCH ?
+       ORDER BY fts.rank
+       LIMIT ?`
+    ).all(query, limit);
+    for (const row of activityRows) {
+      const preview = (row.tool_input ?? row.file_path ?? "").slice(0, SEARCH_PREVIEW_CHARS);
+      results.push({
+        id: String(row.id),
+        type: "activity",
+        title: row.tool_name,
+        preview,
+        score: Math.abs(row.rank),
+        ...row.session_id != null ? { session_id: row.session_id } : {}
+      });
+    }
+  }
+  results.sort((a, b) => b.score - a.score);
+  return results.slice(0, limit);
+}
+function hydrateSearchResults(vectorResults) {
+  if (vectorResults.length === 0) return [];
+  const db = getDatabase();
+  const results = [];
+  const byNamespace = /* @__PURE__ */ new Map();
+  for (const vr of vectorResults) {
+    const group = byNamespace.get(vr.namespace) ?? [];
+    group.push(vr);
+    byNamespace.set(vr.namespace, group);
+  }
+  const sessionStmt = db.prepare(
+    `SELECT id, title, summary FROM sessions WHERE id IN (SELECT value FROM json_each(?))`
+  );
+  const sporeStmt = db.prepare(
+    `SELECT id, observation_type, content, session_id FROM spores WHERE id IN (SELECT value FROM json_each(?))`
+  );
+  const planStmt = db.prepare(
+    `SELECT id, title, content FROM plans WHERE id IN (SELECT value FROM json_each(?))`
+  );
+  const artifactStmt = db.prepare(
+    `SELECT id, title, content FROM artifacts WHERE id IN (SELECT value FROM json_each(?))`
+  );
+  const sessionResults = byNamespace.get("sessions");
+  if (sessionResults && sessionResults.length > 0) {
+    const ids = sessionResults.map((r) => r.id);
+    const rows = sessionStmt.all(JSON.stringify(ids));
+    const rowMap = new Map(rows.map((r) => [r.id, r]));
+    for (const vr of sessionResults) {
+      const row = rowMap.get(vr.id);
+      if (!row) continue;
+      results.push({
+        id: row.id,
+        type: "session",
+        title: row.title ?? `Session ${row.id.slice(-6)}`,
+        preview: (row.summary ?? "").slice(0, SEARCH_PREVIEW_CHARS),
+        score: vr.similarity
+      });
+    }
+  }
+  const sporeResults = byNamespace.get("spores");
+  if (sporeResults && sporeResults.length > 0) {
+    const ids = sporeResults.map((r) => r.id);
+    const rows = sporeStmt.all(JSON.stringify(ids));
+    const rowMap = new Map(rows.map((r) => [r.id, r]));
+    for (const vr of sporeResults) {
+      const row = rowMap.get(vr.id);
+      if (!row) continue;
+      results.push({
+        id: row.id,
+        type: "spore",
+        title: row.observation_type,
+        preview: row.content.slice(0, SEARCH_PREVIEW_CHARS),
+        score: vr.similarity,
+        ...row.session_id != null ? { session_id: row.session_id } : {}
+      });
+    }
+  }
+  const planResults = byNamespace.get("plans");
+  if (planResults && planResults.length > 0) {
+    const ids = planResults.map((r) => r.id);
+    const rows = planStmt.all(JSON.stringify(ids));
+    const rowMap = new Map(rows.map((r) => [r.id, r]));
+    for (const vr of planResults) {
+      const row = rowMap.get(vr.id);
+      if (!row) continue;
+      results.push({
+        id: row.id,
+        type: "plan",
+        title: row.title ?? `Plan ${row.id.slice(-6)}`,
+        preview: (row.content ?? "").slice(0, SEARCH_PREVIEW_CHARS),
+        score: vr.similarity
+      });
+    }
+  }
+  const artifactResults = byNamespace.get("artifacts");
+  if (artifactResults && artifactResults.length > 0) {
+    const ids = artifactResults.map((r) => r.id);
+    const rows = artifactStmt.all(JSON.stringify(ids));
+    const rowMap = new Map(rows.map((r) => [r.id, r]));
+    for (const vr of artifactResults) {
+      const row = rowMap.get(vr.id);
+      if (!row) continue;
+      results.push({
+        id: row.id,
+        type: "artifact",
+        title: row.title,
+        preview: (row.content ?? "").slice(0, SEARCH_PREVIEW_CHARS),
+        score: vr.similarity
+      });
+    }
+  }
+  results.sort((a, b) => b.score - a.score);
+  return results;
+}
+
+export {
+  fullTextSearch,
+  hydrateSearchResults
+};
+//# sourceMappingURL=chunk-PT5IC642.js.map

package/dist/chunk-PT5IC642.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/db/queries/search.ts"],"sourcesContent":["/**\n * Full-text search using SQLite FTS5.\n *\n * Searches prompt_batches and activities via their FTS5 virtual tables.\n * Semantic search (vector similarity) is handled by the external VectorStore —\n * this module covers text-based retrieval only.\n *\n * All queries use parameterized placeholders throughout.\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport {\n  SEARCH_RESULTS_DEFAULT_LIMIT,\n  SEARCH_PREVIEW_CHARS,\n} from '@myco/constants.js';\nimport type { VectorSearchResult } from '@myco/daemon/embedding/types.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** All result types that can appear in search results. */\nexport type SearchResultType =\n  | 'session'\n  | 'spore'\n  | 'plan'\n  | 'artifact'\n  | 'prompt_batch'\n  | 'activity';\n\n/** A single result returned from full-text or semantic search. */\nexport interface SearchResult {\n  id: string;\n  type: SearchResultType;\n  title: string;\n  preview: string;\n  score: number;\n  session_id?: string;\n}\n\n/** Options for fullTextSearch. */\nexport interface SearchOptions {\n  /** Restrict results to a single type. */\n  type?: string;\n  /** Maximum number of results to return (default: SEARCH_RESULTS_DEFAULT_LIMIT). */\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Full-text search across capture tables using SQLite FTS5.\n *\n * Searches prompt_batches (indexed on user_prompt) and activities (indexed\n * on tool_name, tool_input, file_path). The raw query string is passed\n * directly to FTS5 MATCH — callers should sanitize if needed.\n *\n * FTS5 `rank` values are negative (lower = better match). This function\n * converts them to positive scores via `Math.abs()` so higher = better\n * in the returned results.\n *\n * When `options.type` is specified, only the matching table branch is queried.\n *\n * @param query — search string (FTS5 MATCH syntax)\n * @param options — optional type filter and result limit\n * @returns SearchResult[] ordered by score DESC\n */\nexport function fullTextSearch(\n  query: string,\n  options: SearchOptions = {},\n): SearchResult[] {\n  const db = getDatabase();\n  const limit = options.limit ?? SEARCH_RESULTS_DEFAULT_LIMIT;\n  const typeFilter = options.type;\n\n  const results: SearchResult[] = [];\n\n  // -- prompt_batches branch ------------------------------------------------\n  if (typeFilter === undefined || typeFilter === 'prompt_batch') {\n    const batchRows = db.prepare(\n      `SELECT pb.id, pb.prompt_number, pb.session_id,\n              substr(COALESCE(pb.user_prompt, ''), 1, ?) AS preview,\n              fts.rank\n       FROM prompt_batches_fts fts\n       JOIN prompt_batches pb ON pb.id = fts.rowid\n       WHERE prompt_batches_fts MATCH ?\n       ORDER BY fts.rank\n       LIMIT ?`\n    ).all(SEARCH_PREVIEW_CHARS, query, limit) as Array<{\n      id: number;\n      prompt_number: number | null;\n      session_id: string | null;\n      preview: string;\n      rank: number;\n    }>;\n\n    for (const row of batchRows) {\n      results.push({\n        id: String(row.id),\n        type: 'prompt_batch',\n        title: row.prompt_number != null\n          ? `Batch #${row.prompt_number}`\n          : `Batch ${row.id}`,\n        preview: row.preview,\n        score: Math.abs(row.rank),\n        ...(row.session_id != null ? { session_id: row.session_id } : {}),\n      });\n    }\n  }\n\n  // -- activities branch ----------------------------------------------------\n  if (typeFilter === undefined || typeFilter === 'activity') {\n    const activityRows = db.prepare(\n      `SELECT a.id, a.tool_name, a.tool_input, a.file_path, a.session_id,\n              fts.rank\n       FROM activities_fts fts\n       JOIN activities a ON a.id = fts.rowid\n       WHERE activities_fts MATCH ?\n       ORDER BY fts.rank\n       LIMIT ?`\n    ).all(query, limit) as Array<{\n      id: number;\n      tool_name: string;\n      tool_input: string | null;\n      file_path: string | null;\n      session_id: string | null;\n      rank: number;\n    }>;\n\n    for (const row of activityRows) {\n      const preview = (row.tool_input ?? row.file_path ?? '').slice(0, SEARCH_PREVIEW_CHARS);\n      results.push({\n        id: String(row.id),\n        type: 'activity',\n        title: row.tool_name,\n        preview,\n        score: Math.abs(row.rank),\n        ...(row.session_id != null ? { session_id: row.session_id } : {}),\n      });\n    }\n  }\n\n  // Sort combined results by score DESC and apply limit.\n  results.sort((a, b) => b.score - a.score);\n  return results.slice(0, limit);\n}\n\n// ---------------------------------------------------------------------------\n// Hydration — convert VectorSearchResults into SearchResults\n// ---------------------------------------------------------------------------\n\n/** Row shape returned from sessions table for hydration. */\ninterface SessionRow {\n  id: string;\n  title: string | null;\n  summary: string | null;\n  session_id?: undefined;\n}\n\n/** Row shape returned from spores table for hydration. */\ninterface SporeRow {\n  id: string;\n  observation_type: string;\n  content: string;\n  session_id: string | null;\n}\n\n/** Row shape returned from plans table for hydration. */\ninterface PlanRow {\n  id: string;\n  title: string | null;\n  content: string | null;\n}\n\n/** Row shape returned from artifacts table for hydration. */\ninterface ArtifactRow {\n  id: string;\n  title: string;\n  content: string | null;\n}\n\n/**\n * Hydrate vector search results into SearchResults by fetching full records\n * from the record store.\n *\n * Groups results by namespace, queries each table for the relevant IDs, then\n * maps them into SearchResult format with titles and previews.\n */\nexport function hydrateSearchResults(\n  vectorResults: VectorSearchResult[],\n): SearchResult[] {\n  if (vectorResults.length === 0) return [];\n\n  const db = getDatabase();\n  const results: SearchResult[] = [];\n\n  // Group result IDs by namespace\n  const byNamespace = new Map<string, VectorSearchResult[]>();\n  for (const vr of vectorResults) {\n    const group = byNamespace.get(vr.namespace) ?? [];\n    group.push(vr);\n    byNamespace.set(vr.namespace, group);\n  }\n\n  // Use json_each so the statement text is stable and SQLite can cache the plan.\n  const sessionStmt = db.prepare(\n    `SELECT id, title, summary FROM sessions WHERE id IN (SELECT value FROM json_each(?))`,\n  );\n  const sporeStmt = db.prepare(\n    `SELECT id, observation_type, content, session_id FROM spores WHERE id IN (SELECT value FROM json_each(?))`,\n  );\n  const planStmt = db.prepare(\n    `SELECT id, title, content FROM plans WHERE id IN (SELECT value FROM json_each(?))`,\n  );\n  const artifactStmt = db.prepare(\n    `SELECT id, title, content FROM artifacts WHERE id IN (SELECT value FROM json_each(?))`,\n  );\n\n  // --- sessions ---\n  const sessionResults = byNamespace.get('sessions');\n  if (sessionResults && sessionResults.length > 0) {\n    const ids = sessionResults.map((r) => r.id);\n    const rows = sessionStmt.all(JSON.stringify(ids)) as SessionRow[];\n\n    const rowMap = new Map(rows.map((r) => [r.id, r]));\n    for (const vr of sessionResults) {\n      const row = rowMap.get(vr.id);\n      if (!row) continue;\n      results.push({\n        id: row.id,\n        type: 'session',\n        title: row.title ?? `Session ${row.id.slice(-6)}`,\n        preview: (row.summary ?? '').slice(0, SEARCH_PREVIEW_CHARS),\n        score: vr.similarity,\n      });\n    }\n  }\n\n  // --- spores ---\n  const sporeResults = byNamespace.get('spores');\n  if (sporeResults && sporeResults.length > 0) {\n    const ids = sporeResults.map((r) => r.id);\n    const rows = sporeStmt.all(JSON.stringify(ids)) as SporeRow[];\n\n    const rowMap = new Map(rows.map((r) => [r.id, r]));\n    for (const vr of sporeResults) {\n      const row = rowMap.get(vr.id);\n      if (!row) continue;\n      results.push({\n        id: row.id,\n        type: 'spore',\n        title: row.observation_type,\n        preview: row.content.slice(0, SEARCH_PREVIEW_CHARS),\n        score: vr.similarity,\n        ...(row.session_id != null ? { session_id: row.session_id } : {}),\n      });\n    }\n  }\n\n  // --- plans ---\n  const planResults = byNamespace.get('plans');\n  if (planResults && planResults.length > 0) {\n    const ids = planResults.map((r) => r.id);\n    const rows = planStmt.all(JSON.stringify(ids)) as PlanRow[];\n\n    const rowMap = new Map(rows.map((r) => [r.id, r]));\n    for (const vr of planResults) {\n      const row = rowMap.get(vr.id);\n      if (!row) continue;\n      results.push({\n        id: row.id,\n        type: 'plan',\n        title: row.title ?? `Plan ${row.id.slice(-6)}`,\n        preview: (row.content ?? 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package/dist/chunk-QIK2XSDQ.js

@@ -0,0 +1,187 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  isProcessAlive
+} from "./chunk-KB4DGYIY.js";
+import {
+  loadConfig
+} from "./chunk-MHSCMET3.js";
+import {
+  getDatabase
+} from "./chunk-MYX5NCRH.js";
+import {
+  DIGEST_TIERS
+} from "./chunk-5VZ52A4T.js";
+
+// src/db/queries/embeddings.ts
+var EMBEDDABLE_TABLES = ["sessions", "spores", "plans", "artifacts"];
+var EMBEDDABLE_TEXT_COLUMNS = {
+  sessions: "summary",
+  spores: "content",
+  plans: "content",
+  artifacts: "content"
+};
+var INVALID_TABLE_MSG = "Invalid table name \u2014 must be one of: sessions, spores, plans, artifacts";
+var DEFAULT_UNEMBEDDED_LIMIT = 100;
+function assertValidTable(table) {
+  if (!EMBEDDABLE_TABLES.includes(table)) {
+    throw new Error(INVALID_TABLE_MSG);
+  }
+}
+function markEmbedded(table, id) {
+  assertValidTable(table);
+  const db = getDatabase();
+  db.prepare(`UPDATE ${table} SET embedded = 1 WHERE id = ?`).run(id);
+}
+function clearEmbedded(table, id) {
+  assertValidTable(table);
+  const db = getDatabase();
+  db.prepare(`UPDATE ${table} SET embedded = 0 WHERE id = ?`).run(id);
+}
+function getUnembedded(table, limit = DEFAULT_UNEMBEDDED_LIMIT) {
+  assertValidTable(table);
+  const db = getDatabase();
+  const textCol = EMBEDDABLE_TEXT_COLUMNS[table];
+  const contentFilter = table === "sessions" ? " AND summary IS NOT NULL" : "";
+  const statusFilter = table === "spores" ? " AND status = 'active'" : "";
+  return db.prepare(
+    `SELECT id, created_at, ${textCol} AS text
+     FROM ${table}
+     WHERE embedded = 0${contentFilter}${statusFilter}
+     ORDER BY created_at ASC
+     LIMIT ?`
+  ).all(limit);
+}
+function getEmbeddingQueueDepth() {
+  const db = getDatabase();
+  const queueRow = db.prepare(`
+    SELECT
+      (SELECT COUNT(*) FROM sessions  WHERE embedded = 0 AND summary IS NOT NULL) +
+      (SELECT COUNT(*) FROM spores    WHERE embedded = 0 AND status = 'active') +
+      (SELECT COUNT(*) FROM plans     WHERE embedded = 0 AND content IS NOT NULL) +
+      (SELECT COUNT(*) FROM artifacts WHERE embedded = 0 AND content IS NOT NULL)
+    AS cnt
+  `).get();
+  const embeddedRow = db.prepare(`
+    SELECT
+      (SELECT COUNT(*) FROM sessions  WHERE embedded = 1) +
+      (SELECT COUNT(*) FROM spores    WHERE embedded = 1) +
+      (SELECT COUNT(*) FROM plans     WHERE embedded = 1) +
+      (SELECT COUNT(*) FROM artifacts WHERE embedded = 1)
+    AS cnt
+  `).get();
+  const queue_depth = Number(queueRow.cnt ?? 0);
+  const embedded_count = Number(embeddedRow.cnt ?? 0);
+  return { queue_depth, embedded_count, total: queue_depth + embedded_count };
+}
+
+// src/services/stats.ts
+import fs from "fs";
+import path from "path";
+var DAEMON_JSON_FILENAME = "daemon.json";
+function countTable(db, table) {
+  const row = db.prepare(`SELECT COUNT(*) AS cnt FROM ${table}`).get();
+  return Number(row.cnt);
+}
+function gatherStats(vaultDir, options) {
+  const db = getDatabase();
+  const config = loadConfig(vaultDir);
+  const session_count = countTable(db, "sessions");
+  const batch_count = countTable(db, "prompt_batches");
+  const spore_count = countTable(db, "spores");
+  const plan_count = countTable(db, "plans");
+  const artifact_count = countTable(db, "artifacts");
+  const entity_count = countTable(db, "entities");
+  const edge_count = countTable(db, "graph_edges");
+  const embeddingStats = getEmbeddingQueueDepth();
+  const { queue_depth, embedded_count, total: total_embeddable } = embeddingStats;
+  const unprocessedRow = db.prepare(
+    "SELECT COUNT(*) AS cnt FROM prompt_batches WHERE processed = 0"
+  ).get();
+  const unprocessed_batches = Number(unprocessedRow.cnt ?? 0);
+  const lastRun = db.prepare(
+    "SELECT started_at, status FROM agent_runs ORDER BY started_at DESC LIMIT 1"
+  ).get();
+  const last_run_at = lastRun ? lastRun.started_at : null;
+  const last_run_status = lastRun ? lastRun.status : null;
+  const agentTotalRow = db.prepare(
+    "SELECT COUNT(*) AS cnt FROM agent_runs"
+  ).get();
+  const total_runs = Number(agentTotalRow.cnt ?? 0);
+  const digestRows = db.prepare(
+    "SELECT tier, generated_at FROM digest_extracts ORDER BY tier ASC"
+  ).all();
+  const configuredTiers = new Set(DIGEST_TIERS);
+  const activeDigestRows = digestRows.filter((r) => configuredTiers.has(r.tier));
+  const tiers_available = activeDigestRows.map((r) => r.tier);
+  const freshest_tier = tiers_available.length > 0 ? Math.max(...tiers_available) : null;
+  const freshestRow = activeDigestRows.find((r) => r.tier === freshest_tier);
+  const generated_at = freshestRow ? freshestRow.generated_at : null;
+  let daemonPid = 0;
+  let daemonPort = 0;
+  let daemonVersion = "";
+  let daemonUptimeSeconds = 0;
+  const daemonPath = path.join(vaultDir, DAEMON_JSON_FILENAME);
+  if (fs.existsSync(daemonPath)) {
+    try {
+      const info = JSON.parse(fs.readFileSync(daemonPath, "utf-8"));
+      daemonPid = info.pid ?? 0;
+      daemonPort = info.port ?? 0;
+      daemonVersion = info.version ?? "";
+      if (typeof info.started === "string" && isProcessAlive(daemonPid)) {
+        const startedMs = new Date(info.started).getTime();
+        daemonUptimeSeconds = Math.floor((Date.now() - startedMs) / 1e3);
+      }
+    } catch {
+    }
+  }
+  return {
+    daemon: {
+      pid: daemonPid,
+      port: daemonPort,
+      version: daemonVersion,
+      uptime_seconds: daemonUptimeSeconds,
+      active_sessions: options?.active_sessions ?? []
+    },
+    vault: {
+      path: vaultDir,
+      name: path.basename(vaultDir),
+      session_count,
+      batch_count,
+      spore_count,
+      plan_count,
+      artifact_count,
+      entity_count,
+      edge_count
+    },
+    embedding: {
+      provider: config.embedding.provider,
+      model: config.embedding.model,
+      queue_depth,
+      embedded_count,
+      total_embeddable
+    },
+    agent: {
+      last_run_at,
+      last_run_status,
+      total_runs
+    },
+    digest: {
+      freshest_tier,
+      generated_at,
+      tiers_available
+    },
+    unprocessed_batches
+  };
+}
+
+export {
+  EMBEDDABLE_TABLES,
+  EMBEDDABLE_TEXT_COLUMNS,
+  assertValidTable,
+  markEmbedded,
+  clearEmbedded,
+  getUnembedded,
+  getEmbeddingQueueDepth,
+  gatherStats
+};
+//# sourceMappingURL=chunk-QIK2XSDQ.js.map

package/dist/chunk-QIK2XSDQ.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/db/queries/embeddings.ts","../src/services/stats.ts"],"sourcesContent":["/**\n * Embedded flag management — tracks which rows have been indexed in the external vector store.\n *\n * All vector storage and similarity search is handled by the external VectorStore.\n * This module only manages the `embedded` flag on relational tables.\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Tables that participate in vector embedding. */\nexport const EMBEDDABLE_TABLES = ['sessions', 'spores', 'plans', 'artifacts'] as const;\n\n/** TypeScript type for valid embeddable table names. */\nexport type EmbeddableTable = (typeof EMBEDDABLE_TABLES)[number];\n\n/** Per-table column that holds the text content used for embedding. */\nexport const EMBEDDABLE_TEXT_COLUMNS: Record<EmbeddableTable, string> = {\n  sessions: 'summary',\n  spores: 'content',\n  plans: 'content',\n  artifacts: 'content',\n};\n\n/** Error message for invalid table names. */\nconst INVALID_TABLE_MSG = 'Invalid table name — must be one of: sessions, spores, plans, artifacts';\n\n/** Default number of rows returned by getUnembedded. */\nconst DEFAULT_UNEMBEDDED_LIMIT = 100;\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/**\n * Validate that a table name is in the allowlist.\n *\n * @throws if the table name is not one of the embeddable tables.\n */\nexport function assertValidTable(table: string): asserts table is EmbeddableTable {\n  if (!(EMBEDDABLE_TABLES as readonly string[]).includes(table)) {\n    throw new Error(INVALID_TABLE_MSG);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/** Mark a row as embedded in the external vector store. */\nexport function markEmbedded(table: string, id: string | number): void {\n  assertValidTable(table);\n  const db = getDatabase();\n  db.prepare(`UPDATE ${table} SET embedded = 1 WHERE id = ?`).run(id);\n}\n\n/** Clear the embedded flag (e.g., when vector is removed or needs re-embedding). */\nexport function clearEmbedded(table: string, id: string | number): void {\n  assertValidTable(table);\n  const db = getDatabase();\n  db.prepare(`UPDATE ${table} SET embedded = 0 WHERE id = ?`).run(id);\n}\n\n/** Find rows that have not yet been embedded, oldest first. */\nexport function getUnembedded(\n  table: string,\n  limit: number = DEFAULT_UNEMBEDDED_LIMIT,\n): Array<{ id: string | number; created_at: number; text: string }> {\n  assertValidTable(table);\n  const db = getDatabase();\n  const textCol = EMBEDDABLE_TEXT_COLUMNS[table as EmbeddableTable];\n  const contentFilter = table === 'sessions' ? ' AND summary IS NOT NULL' : '';\n  const statusFilter = table === 'spores' ? \" AND status = 'active'\" : '';\n\n  return db.prepare(\n    `SELECT id, created_at, ${textCol} AS text\n     FROM ${table}\n     WHERE embedded = 0${contentFilter}${statusFilter}\n     ORDER BY created_at ASC\n     LIMIT ?`\n  ).all(limit) as Array<{ id: string | number; created_at: number; text: string }>;\n}\n\n/** Get aggregated embedding queue depth across all embeddable tables. */\nexport function getEmbeddingQueueDepth(): {\n  queue_depth: number;\n  embedded_count: number;\n  total: number;\n} {\n  const db = getDatabase();\n\n  const queueRow = db.prepare(`\n    SELECT\n      (SELECT COUNT(*) FROM sessions  WHERE embedded = 0 AND summary IS NOT NULL) +\n      (SELECT COUNT(*) FROM spores    WHERE embedded = 0 AND status = 'active') +\n      (SELECT COUNT(*) FROM plans     WHERE embedded = 0 AND content IS NOT NULL) +\n      (SELECT COUNT(*) FROM artifacts WHERE embedded = 0 AND content IS NOT NULL)\n    AS cnt\n  `).get() as { cnt: number };\n\n  const embeddedRow = db.prepare(`\n    SELECT\n      (SELECT COUNT(*) FROM sessions  WHERE embedded = 1) +\n      (SELECT COUNT(*) FROM spores    WHERE embedded = 1) +\n      (SELECT COUNT(*) FROM plans     WHERE embedded = 1) +\n      (SELECT COUNT(*) FROM artifacts WHERE embedded = 1)\n    AS cnt\n  `).get() as { cnt: number };\n\n  const queue_depth = Number(queueRow.cnt ?? 0);\n  const embedded_count = Number(embeddedRow.cnt ?? 0);\n  return { queue_depth, embedded_count, total: queue_depth + embedded_count };\n}\n","/**\n * Vault statistics — gathered from SQLite.\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { getEmbeddingQueueDepth } from '@myco/db/queries/embeddings.js';\nimport { loadConfig } from '@myco/config/loader.js';\nimport { isProcessAlive } from '@myco/cli/shared.js';\nimport { DIGEST_TIERS } from '@myco/constants.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Process uptime is available directly from the daemon process via process.uptime(). */\nconst DAEMON_JSON_FILENAME = 'daemon.json';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\nexport interface V2Stats {\n  daemon: {\n    pid: number;\n    port: number;\n    version: string;\n    uptime_seconds: number;\n    active_sessions: string[];\n  };\n  vault: {\n    path: string;\n    name: string;\n    session_count: number;\n    batch_count: number;\n    spore_count: number;\n    plan_count: number;\n    artifact_count: number;\n    entity_count: number;\n    edge_count: number;\n  };\n  embedding: {\n    provider: string;\n    model: string;\n    queue_depth: number;\n    embedded_count: number;\n    total_embeddable: number;\n  };\n  agent: {\n    last_run_at: number | null;\n    last_run_status: string | null;\n    total_runs: number;\n  };\n  digest: {\n    freshest_tier: number | null;\n    generated_at: number | null;\n    tiers_available: number[];\n  };\n  unprocessed_batches: number;\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Count rows in a table (sync). */\nfunction countTable(db: ReturnType<typeof getDatabase>, table: string): number {\n  const row = db.prepare(`SELECT COUNT(*) AS cnt FROM ${table}`).get() as { cnt: number };\n  return Number(row.cnt);\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\nexport function gatherStats(vaultDir: string, options?: { active_sessions?: string[] }): V2Stats {\n  const db = getDatabase();\n\n  // Load config for embedding provider info (sync — already on disk)\n  const config = loadConfig(vaultDir);\n\n  // All queries are synchronous — no Promise.all needed\n  const session_count = countTable(db, 'sessions');\n  const batch_count = countTable(db, 'prompt_batches');\n  const spore_count = countTable(db, 'spores');\n  const plan_count = countTable(db, 'plans');\n  const artifact_count = countTable(db, 'artifacts');\n  const entity_count = countTable(db, 'entities');\n  const edge_count = countTable(db, 'graph_edges');\n\n  // Shared embedding queue depth helper (consistent filter logic)\n  const embeddingStats = getEmbeddingQueueDepth();\n  const { queue_depth, embedded_count, total: total_embeddable } = embeddingStats;\n\n  // Unprocessed batches\n  const unprocessedRow = db.prepare(\n    'SELECT COUNT(*) AS cnt FROM prompt_batches WHERE processed = 0',\n  ).get() as { cnt: number };\n  const unprocessed_batches = Number(unprocessedRow.cnt ?? 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