@goondocks/myco 0.20.2 → 0.21.0

package/dist/chunk-4YFKBL3F.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/db/queries/spores.ts"],"sourcesContent":["/**\n * Spore CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { getTeamMachineId } from '@myco/daemon/team-context.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of spores returned by listSpores when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Default spore status for new spores. */\nconst DEFAULT_STATUS = 'active';\n\n/** Default importance score for new spores. */\nexport const DEFAULT_IMPORTANCE = 5;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a spore. */\nexport interface SporeInsert {\n  id: string;\n  agent_id: string;\n  observation_type: string;\n  content: string;\n  created_at: number;\n  session_id?: string | null;\n  prompt_batch_id?: number | null;\n  status?: string;\n  context?: string | null;\n  importance?: number;\n  file_path?: string | null;\n  tags?: string | null;\n  content_hash?: string | null;\n  properties?: string | null;\n  updated_at?: number | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from spore queries (all columns). */\nexport interface SporeRow {\n  id: string;\n  agent_id: string;\n  session_id: string | null;\n  prompt_batch_id: number | null;\n  observation_type: string;\n  status: string;\n  content: string;\n  context: string | null;\n  importance: number;\n  file_path: string | null;\n  tags: string | null;\n  content_hash: string | null;\n  properties: string | null;\n  embedded: number;\n  created_at: number;\n  updated_at: number | null;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Filter options for `listSpores`. */\nexport interface ListSporesOptions {\n  agent_id?: string;\n  observation_type?: string;\n  status?: string;\n  session_id?: string;\n  search?: string;\n  /** Only return spores created after this epoch-seconds timestamp. */\n  since?: number;\n  limit?: number;\n  offset?: number;\n  /**\n   * When explicitly `false`, exclude spores whose source session is still\n   * `status = 'active'` — intelligence-task reads (agent tools, context\n   * queries) should opt in to this. Defaults to permissive so UI listings\n   * and prompt-time context injection keep seeing in-flight work. Explicit\n   * `session_id` filters bypass this check: a direct lookup of one session's\n   * spores is always permitted.\n   */\n  includeActive?: boolean;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst SPORE_COLUMNS = [\n  'id',\n  'agent_id',\n  'session_id',\n  'prompt_batch_id',\n  'observation_type',\n  'status',\n  'content',\n  'context',\n  'importance',\n  'file_path',\n  'tags',\n  'content_hash',\n  'properties',\n  'embedded',\n  'created_at',\n  'updated_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = SPORE_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed SporeRow. */\nfunction toSporeRow(row: Record<string, unknown>): SporeRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    session_id: (row.session_id as string) ?? null,\n    prompt_batch_id: (row.prompt_batch_id as number) ?? null,\n    observation_type: row.observation_type as string,\n    status: row.status as string,\n    content: row.content as string,\n    context: (row.context as string) ?? null,\n    importance: row.importance as number,\n    file_path: (row.file_path as string) ?? null,\n    tags: (row.tags as string) ?? null,\n    content_hash: (row.content_hash as string) ?? null,\n    properties: (row.properties as string) ?? null,\n    embedded: (row.embedded as number) ?? 0,\n    created_at: row.created_at as number,\n    updated_at: (row.updated_at as number) ?? null,\n    machine_id: (row.machine_id as string) ?? 'local',\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new spore.\n *\n * Requires a valid `agent_id` (foreign key to agents table).\n */\nexport function insertSpore(data: SporeInsert): SporeRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO spores (\n       id, agent_id, session_id, prompt_batch_id,\n       observation_type, status, content, context,\n       importance, file_path, tags, content_hash,\n       properties, created_at, updated_at, machine_id\n     ) VALUES (\n       ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?, ?, ?\n     )`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.session_id ?? null,\n    data.prompt_batch_id ?? null,\n    data.observation_type,\n    data.status ?? DEFAULT_STATUS,\n    data.content,\n    data.context ?? null,\n    data.importance ?? DEFAULT_IMPORTANCE,\n    data.file_path ?? null,\n    data.tags ?? null,\n    data.content_hash ?? null,\n    data.properties ?? null,\n    data.created_at,\n    data.updated_at ?? null,\n    data.machine_id ?? getTeamMachineId(),\n  );\n\n  const row = toSporeRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM spores WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n\n  syncRow('spores', row);\n\n  return row;\n}\n\n/**\n * Retrieve a single spore by id.\n *\n * @returns the spore row, or null if not found.\n */\nexport function getSpore(id: string): SporeRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM spores WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toSporeRow(row);\n}\n\n/**\n * List spores with optional filters, ordered by created_at DESC.\n */\n/** Build WHERE clause and bound params from spore filter options. */\nfunction buildSporeWhere(\n  options: Omit<ListSporesOptions, 'limit' | 'offset'>,\n): { where: string; params: unknown[] } {\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n  if (options.observation_type !== undefined) {\n    conditions.push(`observation_type = ?`);\n    params.push(options.observation_type);\n  }\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  }\n  if (options.session_id !== undefined) {\n    conditions.push(`session_id = ?`);\n    params.push(options.session_id);\n  }\n  if (options.search !== undefined && options.search.length > 0) {\n    conditions.push(`(content LIKE ? OR observation_type LIKE ?)`);\n    const pattern = `%${options.search}%`;\n    params.push(pattern, pattern);\n  }\n  if (options.since !== undefined) {\n    conditions.push('created_at > ?');\n    params.push(options.since);\n  }\n\n  // Only exclude spores from in-flight sessions when the caller explicitly\n  // asks for it (intelligence tasks). UI and hook-level context injection\n  // leave this unset so they see everything. A direct session_id filter\n  // bypasses the gate — that lookup is always permitted.\n  if (options.includeActive === false && options.session_id === undefined) {\n    conditions.push(\n      `(session_id IS NULL OR EXISTS (SELECT 1 FROM sessions s WHERE s.id = spores.session_id AND s.status != 'active'))`,\n    );\n  }\n\n  return {\n    where: conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '',\n    params,\n  };\n}\n\n/**\n * List spores with optional filters, ordered by created_at DESC.\n */\nexport function listSpores(\n  options: ListSporesOptions = {},\n): SporeRow[] {\n  const db = getDatabase();\n  const { where, params } = buildSporeWhere(options);\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM spores\n     ${where}\n     ORDER BY created_at DESC\n     LIMIT ?\n     OFFSET ?`,\n  ).all(...params, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toSporeRow);\n}\n\n/**\n * Count spores matching optional filters (for pagination totals).\n */\nexport function countSpores(\n  options: Omit<ListSporesOptions, 'limit' | 'offset'> = {},\n): number {\n  const db = getDatabase();\n  const { where, params } = buildSporeWhere(options);\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM spores ${where}`,\n  ).get(...params) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Count active spores created after a given timestamp.\n * Used by skill-evolve to detect new knowledge since last assessment.\n */\nexport function countSporesSince(sinceEpoch: number): number {\n  const db = getDatabase();\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM spores WHERE created_at > ? AND status = 'active'`,\n  ).get(sinceEpoch) as { count: number };\n  return row.count;\n}\n\n/**\n * List active spore IDs created after a given timestamp, ordered newest first.\n */\nexport function listSporeIdsSince(sinceEpoch: number, limit = 20): string[] {\n  const db = getDatabase();\n  const rows = db.prepare(\n    `SELECT id FROM spores WHERE created_at > ? AND status = 'active' ORDER BY created_at DESC LIMIT ?`,\n  ).all(sinceEpoch, limit) as Array<{ id: string }>;\n  return rows.map(r => r.id);\n}\n\n/**\n * Update the status and updated_at timestamp of a spore.\n *\n * @returns the updated row, or null if the spore does not exist.\n */\nexport function updateSporeStatus(\n  id: string,\n  status: string,\n  updatedAt: number,\n): SporeRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE spores\n     SET status = ?, updated_at = ?\n     WHERE id = ?`,\n  ).run(status, updatedAt, id);\n\n  if (info.changes === 0) return null;\n\n  const row = toSporeRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM spores WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n\n  syncRow('spores', row);\n\n  return row;\n}\n"],"mappings":";;;;;;;;;;AAgBA,IAAM,qBAAqB;AAG3B,IAAM,iBAAiB;AAGhB,IAAM,qBAAqB;AA0ElC,IAAM,gBAAgB;AAAA,EACpB;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AACF;AAEA,IAAM,iBAAiB,cAAc,KAAK,IAAI;AAO9C,SAAS,WAAW,KAAwC;AAC1D,SAAO;AAAA,IACL,IAAI,IAAI;AAAA,IACR,UAAU,IAAI;AAAA,IACd,YAAa,IAAI,cAAyB;AAAA,IAC1C,iBAAkB,IAAI,mBAA8B;AAAA,IACpD,kBAAkB,IAAI;AAAA,IACtB,QAAQ,IAAI;AAAA,IACZ,SAAS,IAAI;AAAA,IACb,SAAU,IAAI,WAAsB;AAAA,IACpC,YAAY,IAAI;AAAA,IAChB,WAAY,IAAI,aAAwB;AAAA,IACxC,MAAO,IAAI,QAAmB;AAAA,IAC9B,cAAe,IAAI,gBAA2B;AAAA,IAC9C,YAAa,IAAI,cAAyB;AAAA,IAC1C,UAAW,IAAI,YAAuB;AAAA,IACtC,YAAY,IAAI;AAAA,IAChB,YAAa,IAAI,cAAyB;AAAA,IAC1C,YAAa,IAAI,cAAyB;AAAA,IAC1C,WAAY,IAAI,aAAwB;AAAA,EAC1C;AACF;AAWO,SAAS,YAAY,MAA6B;AACvD,QAAM,KAAK,YAAY;AAEvB,KAAG;AAAA,IACD;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,EAWF,EAAE;AAAA,IACA,KAAK;AAAA,IACL,KAAK;AAAA,IACL,KAAK,cAAc;AAAA,IACnB,KAAK,mBAAmB;AAAA,IACxB,KAAK;AAAA,IACL,KAAK,UAAU;AAAA,IACf,KAAK;AAAA,IACL,KAAK,WAAW;AAAA,IAChB,KAAK,cAAc;AAAA,IACnB,KAAK,aAAa;AAAA,IAClB,KAAK,QAAQ;AAAA,IACb,KAAK,gBAAgB;AAAA,IACrB,KAAK,cAAc;AAAA,IACnB,KAAK;AAAA,IACL,KAAK,cAAc;AAAA,IACnB,KAAK,cAAc,iBAAiB;AAAA,EACtC;AAEA,QAAM,MAAM;AAAA,IACV,GAAG,QAAQ,UAAU,cAAc,2BAA2B,EAAE,IAAI,KAAK,EAAE;AAAA,EAC7E;AAEA,UAAQ,UAAU,GAAG;AAErB,SAAO;AACT;AAOO,SAAS,SAAS,IAA6B;AACpD,QAAM,KAAK,YAAY;AAEvB,QAAM,MAAM,GAAG;AAAA,IACb,UAAU,cAAc;AAAA,EAC1B,EAAE,IAAI,EAAE;AAER,MAAI,CAAC,IAAK,QAAO;AACjB,SAAO,WAAW,GAAG;AACvB;AAMA,SAAS,gBACP,SACsC;AACtC,QAAM,aAAuB,CAAC;AAC9B,QAAM,SAAoB,CAAC;AAE3B,MAAI,QAAQ,aAAa,QAAW;AAClC,eAAW,KAAK,cAAc;AAC9B,WAAO,KAAK,QAAQ,QAAQ;AAAA,EAC9B;AACA,MAAI,QAAQ,qBAAqB,QAAW;AAC1C,eAAW,KAAK,sBAAsB;AACtC,WAAO,KAAK,QAAQ,gBAAgB;AAAA,EACtC;AACA,MAAI,QAAQ,WAAW,QAAW;AAChC,eAAW,KAAK,YAAY;AAC5B,WAAO,KAAK,QAAQ,MAAM;AAAA,EAC5B;AACA,MAAI,QAAQ,eAAe,QAAW;AACpC,eAAW,KAAK,gBAAgB;AAChC,WAAO,KAAK,QAAQ,UAAU;AAAA,EAChC;AACA,MAAI,QAAQ,WAAW,UAAa,QAAQ,OAAO,SAAS,GAAG;AAC7D,eAAW,KAAK,6CAA6C;AAC7D,UAAM,UAAU,IAAI,QAAQ,MAAM;AAClC,WAAO,KAAK,SAAS,OAAO;AAAA,EAC9B;AACA,MAAI,QAAQ,UAAU,QAAW;AAC/B,eAAW,KAAK,gBAAgB;AAChC,WAAO,KAAK,QAAQ,KAAK;AAAA,EAC3B;AAMA,MAAI,QAAQ,kBAAkB,SAAS,QAAQ,eAAe,QAAW;AACvE,eAAW;AAAA,MACT;AAAA,IACF;AAAA,EACF;AAEA,SAAO;AAAA,IACL,OAAO,WAAW,SAAS,IAAI,SAAS,WAAW,KAAK,OAAO,CAAC,KAAK;AAAA,IACrE;AAAA,EACF;AACF;AAKO,SAAS,WACd,UAA6B,CAAC,GAClB;AACZ,QAAM,KAAK,YAAY;AACvB,QAAM,EAAE,OAAO,OAAO,IAAI,gBAAgB,OAAO;AACjD,QAAM,QAAQ,QAAQ,SAAS;AAC/B,QAAM,SAAS,QAAQ,UAAU;AAEjC,QAAM,OAAO,GAAG;AAAA,IACd,UAAU,cAAc;AAAA;AAAA,OAErB,KAAK;AAAA;AAAA;AAAA;AAAA,EAIV,EAAE,IAAI,GAAG,QAAQ,OAAO,MAAM;AAE9B,SAAO,KAAK,IAAI,UAAU;AAC5B;AAKO,SAAS,YACd,UAAuD,CAAC,GAChD;AACR,QAAM,KAAK,YAAY;AACvB,QAAM,EAAE,OAAO,OAAO,IAAI,gBAAgB,OAAO;AAEjD,QAAM,MAAM,GAAG;AAAA,IACb,wCAAwC,KAAK;AAAA,EAC/C,EAAE,IAAI,GAAG,MAAM;AAEf,SAAO,IAAI;AACb;AAiBO,SAAS,kBAAkB,YAAoB,QAAQ,IAAc;AAC1E,QAAM,KAAK,YAAY;AACvB,QAAM,OAAO,GAAG;AAAA,IACd;AAAA,EACF,EAAE,IAAI,YAAY,KAAK;AACvB,SAAO,KAAK,IAAI,OAAK,EAAE,EAAE;AAC3B;AAOO,SAAS,kBACd,IACA,QACA,WACiB;AACjB,QAAM,KAAK,YAAY;AAEvB,QAAM,OAAO,GAAG;AAAA,IACd;AAAA;AAAA;AAAA,EAGF,EAAE,IAAI,QAAQ,WAAW,EAAE;AAE3B,MAAI,KAAK,YAAY,EAAG,QAAO;AAE/B,QAAM,MAAM;AAAA,IACV,GAAG,QAAQ,UAAU,cAAc,2BAA2B,EAAE,IAAI,EAAE;AAAA,EACxE;AAEA,UAAQ,UAAU,GAAG;AAErB,SAAO;AACT;","names":[]}

package/dist/chunk-CCRGY3QW.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/agent/loader.ts","../src/db/queries/agents.ts","../src/db/queries/tasks.ts","../src/agent/schemas.ts"],"sourcesContent":["/**\n * Agent definition and task YAML loader.\n *\n * Reads agent.yaml and tasks/*.yaml from the definitions directory,\n * validates their shape, and provides helpers for merging built-in\n * definitions with database overrides into an EffectiveConfig.\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { findPackageRoot } from '@myco/utils/find-package-root.js';\nimport { parse as parseYaml } from 'yaml';\nimport { epochSeconds, DEFAULT_AGENT_ID, BUILT_IN_SOURCE, USER_TASK_SOURCE } from '@myco/constants.js';\nimport { getDatabase } from '@myco/db/client.js';\nimport { registerAgent } from '@myco/db/queries/agents.js';\nimport { upsertTask } from '@myco/db/queries/tasks.js';\nimport type { AgentRow } from '@myco/db/queries/agents.js';\nimport type { AgentDefinition, AgentTask, EffectiveConfig } from './types.js';\nimport { AgentDefinitionSchema, AgentTaskSchema } from './schemas.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Filename for the built-in agent definition. */\nconst AGENT_DEFINITION_FILE = 'agent.yaml';\n\n/** Subdirectory containing task YAML files. */\nconst TASKS_SUBDIRECTORY = 'tasks';\n\n// Package root resolution uses shared findPackageRoot from @myco/utils\n\n// BUILT_IN_SOURCE imported from @myco/constants.js\n\n// ---------------------------------------------------------------------------\n// Definitions directory resolution\n// ---------------------------------------------------------------------------\n\n/**\n * Resolve the definitions directory at runtime.\n *\n * Strategy (same pattern as `src/prompts/index.ts`):\n * 1. Walk up from `import.meta.url` looking for `package.json`.\n * 2. From package root, try `dist/src/agent/definitions/` (tsup output).\n * 3. Fall back to `src/agent/definitions/` (dev mode / tsc output).\n * 4. Also check if the current file's directory already contains agent.yaml.\n */\nexport function resolveDefinitionsDir(): string {\n  const scriptDir = path.dirname(fileURLToPath(import.meta.url));\n\n  // Check if we're already adjacent to the definitions (tsc output or dev mode)\n  const adjacentDefs = path.join(scriptDir, 'definitions');\n  if (fs.existsSync(path.join(adjacentDefs, AGENT_DEFINITION_FILE))) {\n    return adjacentDefs;\n  }\n\n  // Walk up to package root using shared utility\n  const root = findPackageRoot(scriptDir);\n  if (root) {\n    // Try dist path first (tsup bundled output)\n    const distPath = path.join(root, 'dist', 'src', 'agent', 'definitions');\n    if (fs.existsSync(path.join(distPath, AGENT_DEFINITION_FILE))) {\n      return distPath;\n    }\n    // Fall back to src path (dev mode)\n    const srcPath = path.join(root, 'src', 'agent', 'definitions');\n    if (fs.existsSync(path.join(srcPath, AGENT_DEFINITION_FILE))) {\n      return srcPath;\n    }\n  }\n\n  // Final fallback: adjacent to current file\n  return adjacentDefs;\n}\n\n// ---------------------------------------------------------------------------\n// YAML loaders\n// ---------------------------------------------------------------------------\n\n/**\n * Load and parse the built-in agent definition from `agent.yaml`.\n *\n * @param definitionsDir — path to the definitions directory.\n * @returns the parsed AgentDefinition.\n * @throws if the file is missing or malformed.\n */\nexport function loadAgentDefinition(definitionsDir: string): AgentDefinition {\n  const filePath = path.join(definitionsDir, AGENT_DEFINITION_FILE);\n  const raw = fs.readFileSync(filePath, 'utf-8');\n  const parsed = AgentDefinitionSchema.parse(parseYaml(raw));\n\n  return {\n    name: parsed.name,\n    displayName: parsed.displayName,\n    description: parsed.description.trim(),\n    model: parsed.model,\n    maxTurns: parsed.maxTurns,\n    timeoutSeconds: parsed.timeoutSeconds,\n    systemPromptPath: parsed.systemPromptPath,\n    tools: parsed.tools,\n  };\n}\n\n/**\n * Load and parse all task YAML files from `tasks/`.\n *\n * @param definitionsDir — path to the definitions directory.\n * @returns array of parsed AgentTask objects.\n */\nexport function loadAgentTasks(definitionsDir: string): AgentTask[] {\n  const tasksDir = path.join(definitionsDir, TASKS_SUBDIRECTORY);\n  if (!fs.existsSync(tasksDir)) return [];\n\n  const files = fs.readdirSync(tasksDir).filter((f) => f.endsWith('.yaml'));\n  return files.map((file) => {\n    const raw = fs.readFileSync(path.join(tasksDir, file), 'utf-8');\n    const parsed = AgentTaskSchema.parse(parseYaml(raw));\n\n    return taskFromParsed(parsed);\n  });\n}\n\n/**\n * Convert a Zod-parsed task schema result to an AgentTask object.\n *\n * Shared by loadAgentTasks (built-in) and registry (user tasks) to ensure\n * all optional fields are consistently spread. Adding a new optional field\n * to AgentTaskSchema only requires updating this one function.\n */\nexport function taskFromParsed(parsed: AgentTask): AgentTask {\n  return {\n    name: parsed.name,\n    displayName: parsed.displayName,\n    description: parsed.description.trim(),\n    agent: parsed.agent,\n    prompt: parsed.prompt.trim(),\n    isDefault: parsed.isDefault,\n    ...(parsed.toolOverrides ? { toolOverrides: parsed.toolOverrides } : {}),\n    ...(parsed.model ? { model: parsed.model } : {}),\n    ...(parsed.maxTurns ? { maxTurns: parsed.maxTurns } : {}),\n    ...(parsed.timeoutSeconds ? { timeoutSeconds: parsed.timeoutSeconds } : {}),\n    ...(parsed.phases ? { phases: parsed.phases } : {}),\n    ...(parsed.orchestrator ? { orchestrator: parsed.orchestrator } : {}),\n    ...(parsed.contextQueries ? { contextQueries: parsed.contextQueries } : {}),\n    ...(parsed.execution ? { execution: parsed.execution } : {}),\n    ...(parsed.schemaVersion ? { schemaVersion: parsed.schemaVersion } : {}),\n    ...(parsed.schedule ? { schedule: parsed.schedule } : {}),\n    ...(parsed.params ? { params: parsed.params } : {}),\n  };\n}\n\n/**\n * Load a system prompt markdown file.\n *\n * @param definitionsDir — path to the definitions directory.\n * @param relativePath — path relative to definitionsDir (from AgentDefinition.systemPromptPath).\n * @returns the prompt file content as a string.\n */\nexport function loadSystemPrompt(definitionsDir: string, relativePath: string): string {\n  const filePath = path.resolve(definitionsDir, relativePath);\n  return fs.readFileSync(filePath, 'utf-8').trim();\n}\n\n// ---------------------------------------------------------------------------\n// Config resolution\n// ---------------------------------------------------------------------------\n\n/**\n * Merge a built-in AgentDefinition with optional database overrides and\n * task-specific configuration to produce the effective runtime config.\n *\n * Priority (highest wins):\n * 1. Task toolOverrides (replaces tool list entirely if present)\n * 2. AgentRow database overrides (model, maxTurns, timeoutSeconds, tool_access)\n * 3. Built-in AgentDefinition defaults\n *\n * @param definition — the built-in agent definition from YAML.\n * @param agentOverrides — optional database row with user-applied overrides.\n * @param taskOverrides — optional task definition (determines prompt and may override tools).\n * @returns the merged EffectiveConfig.\n */\nexport function resolveEffectiveConfig(\n  definition: AgentDefinition,\n  agentOverrides?: AgentRow | null,\n  taskOverrides?: AgentTask,\n): EffectiveConfig {\n  // Start with definition defaults\n  let model = definition.model;\n  let maxTurns = definition.maxTurns;\n  let timeoutSeconds = definition.timeoutSeconds;\n  let tools = [...definition.tools];\n  const agentId = agentOverrides?.id ?? DEFAULT_AGENT_ID;\n\n  // Apply agent DB overrides\n  if (agentOverrides) {\n    if (agentOverrides.model) model = agentOverrides.model;\n    if (agentOverrides.max_turns !== null) maxTurns = agentOverrides.max_turns;\n    if (agentOverrides.timeout_seconds !== null) timeoutSeconds = agentOverrides.timeout_seconds;\n    if (agentOverrides.tool_access) {\n      try {\n        const parsed = JSON.parse(agentOverrides.tool_access);\n        if (Array.isArray(parsed)) tools = parsed as string[];\n      } catch {\n        // Invalid JSON in tool_access — keep definition defaults\n      }\n    }\n  }\n\n  // Apply task overrides (model, turns, timeout, tool list)\n  if (taskOverrides?.model) model = taskOverrides.model;\n  if (taskOverrides?.maxTurns) maxTurns = taskOverrides.maxTurns;\n  if (taskOverrides?.timeoutSeconds) timeoutSeconds = taskOverrides.timeoutSeconds;\n  if (taskOverrides?.toolOverrides) {\n    tools = [...taskOverrides.toolOverrides];\n  }\n\n  // Apply execution config overrides (highest priority)\n  // Precedence: execution.model > task.model > agent.model\n  if (taskOverrides?.execution) {\n    if (taskOverrides.execution.model) model = taskOverrides.execution.model;\n    if (taskOverrides.execution.maxTurns) maxTurns = taskOverrides.execution.maxTurns;\n    if (taskOverrides.execution.timeoutSeconds) timeoutSeconds = taskOverrides.execution.timeoutSeconds;\n  }\n\n  // Task prompt and display info (fall back to a generic prompt)\n  const taskName = taskOverrides?.name ?? 'full-intelligence';\n  const taskDisplayName = taskOverrides?.displayName ?? 'Full Intelligence';\n  const taskPrompt = taskOverrides?.prompt ?? '';\n\n  return {\n    agentId,\n    model,\n    maxTurns,\n    timeoutSeconds,\n    systemPromptPath: definition.systemPromptPath,\n    tools,\n    taskName,\n    taskDisplayName,\n    taskPrompt,\n    ...(taskOverrides?.phases ? { phases: taskOverrides.phases } : {}),\n    ...(taskOverrides?.orchestrator ? { orchestrator: taskOverrides.orchestrator } : {}),\n    ...(taskOverrides?.contextQueries ? { contextQueries: taskOverrides.contextQueries } : {}),\n    ...(taskOverrides?.execution ? { execution: taskOverrides.execution } : {}),\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Database registration\n// ---------------------------------------------------------------------------\n\n/**\n * Register the built-in agent and all built-in tasks into the database.\n *\n * Idempotent: uses upsert (ON CONFLICT DO UPDATE) for both agent and tasks.\n * Safe to call on every daemon startup.\n *\n * @param definitionsDir — path to the definitions directory.\n */\nexport async function registerBuiltInAgentsAndTasks(definitionsDir: string, vaultDir?: string): Promise<void> {\n  const definition = loadAgentDefinition(definitionsDir);\n  const tasks = loadAgentTasks(definitionsDir);\n  const now = epochSeconds();\n\n  // Upsert the built-in agent\n  registerAgent({\n    id: definition.name,\n    name: definition.displayName,\n    model: definition.model,\n    source: BUILT_IN_SOURCE,\n    max_turns: definition.maxTurns,\n    timeout_seconds: definition.timeoutSeconds,\n    tool_access: JSON.stringify(definition.tools),\n    created_at: now,\n    updated_at: now,\n  });\n\n  // Upsert all built-in tasks\n  for (const task of tasks) {\n    upsertTask({\n      id: task.name,\n      agent_id: definition.name,\n      source: BUILT_IN_SOURCE,\n      display_name: task.displayName,\n      description: task.description,\n      prompt: task.prompt,\n      is_default: task.isDefault ? 1 : 0,\n      tool_overrides: task.toolOverrides ? JSON.stringify(task.toolOverrides) : null,\n      config: JSON.stringify({\n        phases: task.phases ?? null,\n        execution: task.execution ?? null,\n        contextQueries: task.contextQueries ?? null,\n        schemaVersion: task.schemaVersion ?? 1,\n      }),\n      created_at: now,\n      updated_at: now,\n    });\n  }\n\n  // Remove built-in tasks that no longer have YAML definitions\n  const validTaskIds = tasks.map(t => t.name);\n  if (validTaskIds.length > 0) {\n    const db = getDatabase();\n    const placeholders = validTaskIds.map(() => '?').join(', ');\n    db.prepare(\n      `DELETE FROM agent_tasks\n       WHERE source = ? AND agent_id = ? AND id NOT IN (${placeholders})`,\n    ).run(BUILT_IN_SOURCE, definition.name, ...validTaskIds);\n  }\n\n  // Register user tasks from the vault (if vault dir provided)\n  if (vaultDir) {\n    const { loadAllTasks } = await import('./registry.js');\n    const allTasks = loadAllTasks(definitionsDir, vaultDir);\n    for (const [name, task] of allTasks) {\n      if (task.source === USER_TASK_SOURCE) {\n        upsertTask({\n          id: name,\n          agent_id: task.agent ?? definition.name,\n          source: USER_TASK_SOURCE,\n          display_name: task.displayName,\n          description: task.description,\n          prompt: task.prompt,\n          is_default: task.isDefault ? 1 : 0,\n          tool_overrides: task.toolOverrides ? JSON.stringify(task.toolOverrides) : null,\n          config: JSON.stringify({\n            phases: task.phases ?? null,\n            execution: task.execution ?? null,\n            contextQueries: task.contextQueries ?? null,\n            schemaVersion: task.schemaVersion ?? 1,\n          }),\n          created_at: now,\n          updated_at: now,\n        });\n      }\n    }\n  }\n}\n","/**\n * Agent CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when registering an agent. */\nexport interface AgentInsert {\n  id: string;\n  name: string;\n  created_at: number;\n  provider?: string | null;\n  model?: string | null;\n  system_prompt_hash?: string | null;\n  config?: string | null;\n  source?: string;\n  system_prompt?: string | null;\n  max_turns?: number | null;\n  timeout_seconds?: number | null;\n  tool_access?: string | null;\n  enabled?: number;\n  updated_at?: number | null;\n}\n\n/** Row shape returned from agent queries (all columns). */\nexport interface AgentRow {\n  id: string;\n  name: string;\n  provider: string | null;\n  model: string | null;\n  system_prompt_hash: string | null;\n  config: string | null;\n  source: string;\n  system_prompt: string | null;\n  max_turns: number | null;\n  timeout_seconds: number | null;\n  tool_access: string | null;\n  enabled: number;\n  created_at: number;\n  updated_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default agent source for new agents. */\nconst DEFAULT_SOURCE = 'built-in';\n\n/** Default enabled flag for new agents. */\nconst DEFAULT_ENABLED = 1;\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst AGENT_COLUMNS = [\n  'id',\n  'name',\n  'provider',\n  'model',\n  'system_prompt_hash',\n  'config',\n  'source',\n  'system_prompt',\n  'max_turns',\n  'timeout_seconds',\n  'tool_access',\n  'enabled',\n  'created_at',\n  'updated_at',\n] as const;\n\nconst SELECT_COLUMNS = AGENT_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed AgentRow. */\nfunction toAgentRow(row: Record<string, unknown>): AgentRow {\n  return {\n    id: row.id as string,\n    name: row.name as string,\n    provider: (row.provider as string) ?? null,\n    model: (row.model as string) ?? null,\n    system_prompt_hash: (row.system_prompt_hash as string) ?? null,\n    config: (row.config as string) ?? null,\n    source: (row.source as string) ?? DEFAULT_SOURCE,\n    system_prompt: (row.system_prompt as string) ?? null,\n    max_turns: (row.max_turns as number) ?? null,\n    timeout_seconds: (row.timeout_seconds as number) ?? null,\n    tool_access: (row.tool_access as string) ?? null,\n    enabled: (row.enabled as number) ?? DEFAULT_ENABLED,\n    created_at: row.created_at as number,\n    updated_at: (row.updated_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Register an agent or update it if the id already exists.\n *\n * On conflict the row is updated with the values from `data`.\n * This is the idempotent upsert — calling twice with the same data\n * produces the same result.\n */\nexport function registerAgent(data: AgentInsert): AgentRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO agents (\n       id, name, provider, model, system_prompt_hash, config,\n       source, system_prompt, max_turns, timeout_seconds, tool_access,\n       enabled, created_at, updated_at\n     ) VALUES (\n       ?, ?, ?, ?, ?, ?,\n       ?, ?, ?, ?, ?,\n       ?, ?, ?\n     )\n     ON CONFLICT (id) DO UPDATE SET\n       name               = EXCLUDED.name,\n       provider           = EXCLUDED.provider,\n       model              = EXCLUDED.model,\n       system_prompt_hash = EXCLUDED.system_prompt_hash,\n       config             = EXCLUDED.config,\n       source             = EXCLUDED.source,\n       system_prompt      = EXCLUDED.system_prompt,\n       max_turns          = EXCLUDED.max_turns,\n       timeout_seconds    = EXCLUDED.timeout_seconds,\n       tool_access        = EXCLUDED.tool_access,\n       enabled            = EXCLUDED.enabled,\n       updated_at         = EXCLUDED.updated_at`,\n  ).run(\n    data.id,\n    data.name,\n    data.provider ?? null,\n    data.model ?? null,\n    data.system_prompt_hash ?? null,\n    data.config ?? null,\n    data.source ?? DEFAULT_SOURCE,\n    data.system_prompt ?? null,\n    data.max_turns ?? null,\n    data.timeout_seconds ?? null,\n    data.tool_access ?? null,\n    data.enabled ?? DEFAULT_ENABLED,\n    data.created_at,\n    data.updated_at ?? null,\n  );\n\n  return toAgentRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agents WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Retrieve a single agent by id.\n *\n * @returns the agent row, or null if not found.\n */\nexport function getAgent(id: string): AgentRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM agents WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toAgentRow(row);\n}\n\n/**\n * List all agents, ordered by created_at ASC.\n */\nexport function listAgents(): AgentRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agents\n     ORDER BY created_at ASC`,\n  ).all() as Record<string, unknown>[];\n\n  return rows.map(toAgentRow);\n}\n","/**\n * Agent task CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { BUILT_IN_SOURCE } from '@myco/constants.js';\nimport type { TaskConfig } from '@myco/agent/types.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of tasks returned by listTasks when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Default task source for new tasks. */\nconst DEFAULT_SOURCE = BUILT_IN_SOURCE;\n\n/** Default is_default flag for new tasks. */\nconst DEFAULT_IS_DEFAULT = 0;\n\n/** Value indicating a task is the default for its agent. */\nconst IS_DEFAULT_TRUE = 1;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when upserting a task. */\nexport interface TaskInsert {\n  id: string;\n  agent_id: string;\n  prompt: string;\n  created_at: number;\n  source?: string;\n  display_name?: string | null;\n  description?: string | null;\n  is_default?: number;\n  tool_overrides?: string | null;\n  model?: string | null;\n  config?: string | null;\n  updated_at?: number | null;\n}\n\n/** Row shape returned from agent_tasks queries (all columns). */\nexport interface TaskRow {\n  id: string;\n  agent_id: string;\n  source: string;\n  display_name: string | null;\n  description: string | null;\n  prompt: string;\n  is_default: number;\n  tool_overrides: string | null;\n  model: string | null;\n  config: string | null;\n  created_at: number;\n  updated_at: number | null;\n}\n\n/** Filter options for `listTasks`. */\nexport interface ListTasksOptions {\n  limit?: number;\n  agent_id?: string;\n  source?: string;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst TASK_COLUMNS = [\n  'id',\n  'agent_id',\n  'source',\n  'display_name',\n  'description',\n  'prompt',\n  'is_default',\n  'tool_overrides',\n  'model',\n  'config',\n  'created_at',\n  'updated_at',\n] as const;\n\nconst SELECT_COLUMNS = TASK_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed TaskRow. */\nfunction toTaskRow(row: Record<string, unknown>): TaskRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    source: (row.source as string) ?? DEFAULT_SOURCE,\n    display_name: (row.display_name as string) ?? null,\n    description: (row.description as string) ?? null,\n    prompt: row.prompt as string,\n    is_default: (row.is_default as number) ?? DEFAULT_IS_DEFAULT,\n    tool_overrides: (row.tool_overrides as string) ?? null,\n    model: (row.model as string) ?? null,\n    config: (row.config as string) ?? null,\n    created_at: row.created_at as number,\n    updated_at: (row.updated_at as number) ?? null,\n  };\n}\n\n/** Serialize a TaskConfig to a JSON string for storage. */\nexport function serializeConfig(config: TaskConfig | null): string | null {\n  if (!config) return null;\n  return JSON.stringify(config);\n}\n\n/** Deserialize a TaskConfig from a stored JSON string. Returns null on failure. */\nexport function deserializeConfig(raw: string | null): TaskConfig | null {\n  if (!raw) return null;\n  try {\n    return JSON.parse(raw) as TaskConfig;\n  } catch {\n    return null;\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Upsert a task — insert or update on conflict.\n *\n * On conflict the row is updated with the values from `data`.\n * This is the idempotent upsert — calling twice with the same data\n * produces the same result.\n */\nexport function upsertTask(data: TaskInsert): TaskRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO agent_tasks (\n       id, agent_id, source, display_name, description,\n       prompt, is_default, tool_overrides, model, config,\n       created_at, updated_at\n     ) VALUES (\n       ?, ?, ?, ?, ?,\n       ?, ?, ?, ?, ?,\n       ?, ?\n     )\n     ON CONFLICT (id) DO UPDATE SET\n       agent_id       = EXCLUDED.agent_id,\n       source         = EXCLUDED.source,\n       display_name   = EXCLUDED.display_name,\n       description    = EXCLUDED.description,\n       prompt         = EXCLUDED.prompt,\n       is_default     = EXCLUDED.is_default,\n       tool_overrides = EXCLUDED.tool_overrides,\n       model          = EXCLUDED.model,\n       config         = EXCLUDED.config,\n       updated_at     = EXCLUDED.updated_at`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.source ?? DEFAULT_SOURCE,\n    data.display_name ?? null,\n    data.description ?? null,\n    data.prompt,\n    data.is_default ?? DEFAULT_IS_DEFAULT,\n    data.tool_overrides ?? null,\n    data.model ?? null,\n    data.config ?? null,\n    data.created_at,\n    data.updated_at ?? null,\n  );\n\n  return toTaskRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_tasks WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Retrieve a single task by id.\n *\n * @returns the task row, or null if not found.\n */\nexport function getTask(id: string): TaskRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM agent_tasks WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toTaskRow(row);\n}\n\n/**\n * List tasks with optional filters, ordered by created_at ASC.\n */\nexport function listTasks(\n  options: ListTasksOptions = {},\n): TaskRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n\n  if (options.source !== undefined) {\n    conditions.push(`source = ?`);\n    params.push(options.source);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n\n  params.push(limit);\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_tasks\n     ${where}\n     ORDER BY created_at ASC\n     LIMIT ?`,\n  ).all(...params) as Record<string, unknown>[];\n\n  return rows.map(toTaskRow);\n}\n\n/**\n * Get the default task for an agent.\n *\n * @returns the default task row, or null if no default exists.\n */\nexport function getDefaultTask(\n  agentId: string,\n): TaskRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_tasks\n     WHERE agent_id = ? AND is_default = ?\n     LIMIT 1`,\n  ).get(agentId, IS_DEFAULT_TRUE) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toTaskRow(row);\n}\n\n/**\n * List all tasks for an agent, ordered by display_name ASC.\n *\n * Rows with a null display_name sort before named tasks.\n */\nexport function listTasksByAgent(\n  agentId: string,\n): TaskRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_tasks\n     WHERE agent_id = ?\n     ORDER BY display_name ASC`,\n  ).all(agentId) as Record<string, unknown>[];\n\n  return rows.map(toTaskRow);\n}\n\n/**\n * Delete a task by id.\n *\n * Built-in tasks (source = 'built-in') are protected and cannot be deleted.\n *\n * @returns true if the task was deleted, false if not found or protected.\n */\nexport function deleteTask(id: string): boolean {\n  const db = getDatabase();\n  const info = db.prepare(\n    `DELETE FROM agent_tasks WHERE id = ? AND source != ?`,\n  ).run(id, BUILT_IN_SOURCE);\n  return info.changes > 0;\n}\n","/**\n * Zod schemas for agent definition and task YAML validation.\n *\n * These schemas are shared between the loader (which validates YAML files)\n * and any other code that needs to parse or validate task/agent config.\n */\n\nimport { z } from 'zod/v4';\nimport { SCHEDULABLE_POWER_STATES } from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Schema version\n// ---------------------------------------------------------------------------\n\n/** Current schema version for task config structures. */\nexport const CURRENT_TASK_SCHEMA_VERSION = 1;\n\n// ---------------------------------------------------------------------------\n// Shared sub-schemas\n// ---------------------------------------------------------------------------\n\n/** Schema for API provider configuration. */\nexport const ProviderConfigSchema = z.object({\n  type: z.enum(['anthropic', 'ollama', 'lmstudio']),\n  baseUrl: z.string().optional(),\n  apiKey: z.string().optional(),\n  model: z.string().optional(),\n});\n\n/** Schema for execution configuration overrides. */\nexport const ExecutionConfigSchema = z.object({\n  model: z.string().optional(),\n  maxTurns: z.number().optional(),\n  timeoutSeconds: z.number().optional(),\n  provider: ProviderConfigSchema.optional(),\n});\n\n/** Schema for a single context query entry. */\nexport const ContextQuerySchema = z.object({\n  tool: z.string(),\n  queryTemplate: z.string(),\n  limit: z.number(),\n  purpose: z.string(),\n  required: z.boolean(),\n});\n\n// ---------------------------------------------------------------------------\n// Agent definition schema\n// ---------------------------------------------------------------------------\n\n/** Schema for agent.yaml agent definition files. */\nexport const AgentDefinitionSchema = z.object({\n  name: z.string(),\n  displayName: z.string(),\n  description: z.string(),\n  model: z.string(),\n  maxTurns: z.number(),\n  timeoutSeconds: z.number(),\n  systemPromptPath: z.string(),\n  tools: z.array(z.string()),\n});\n\n// ---------------------------------------------------------------------------\n// Task schemas\n// ---------------------------------------------------------------------------\n\n/** Schema for orchestrator configuration on a task definition. */\nexport const OrchestratorConfigSchema = z.object({\n  enabled: z.boolean(),\n  model: z.string().optional(),\n  maxTurns: z.number().optional(),\n});\n\n/** Pre-condition identifiers for scheduled task auto-runs. */\nconst PreConditionSchema = z.enum([\n  'has-unprocessed-batches',\n  'has-active-skills',\n  'has-approved-candidates',\n  'has-skill-survey-evidence',\n]);\n\n/** Schedule configuration for automatic task execution via PowerManager. */\nexport const TaskScheduleSchema = z.object({\n  /** Whether auto-run is enabled for this task. */\n  enabled: z.boolean().default(false),\n  /** Seconds between runs. */\n  intervalSeconds: z.number().int().positive(),\n  /** PowerManager states where this task runs. */\n  runIn: z.array(z.enum([...SCHEDULABLE_POWER_STATES])).min(1),\n  /** Optional pre-condition check before running. */\n  preCondition: PreConditionSchema.optional(),\n});\n\n/** Schema for a single phase within a phased task pipeline. */\nexport const PhaseDefinitionSchema = z.object({\n  name: z.string(),\n  prompt: z.string(),\n  tools: z.array(z.string()),\n  maxTurns: z.number(),\n  model: z.string().optional(),\n  required: z.boolean(),\n  dependsOn: z.array(z.string()).optional(),\n  provider: ProviderConfigSchema.optional(),\n  skipPriorContext: z.boolean().optional(),\n  readOnly: z.boolean().optional(),\n});\n\n/** Schema for task YAML files in tasks/. */\nexport const AgentTaskSchema = z.object({\n  name: z.string(),\n  displayName: z.string(),\n  description: z.string(),\n  agent: z.string(),\n  prompt: z.string(),\n  isDefault: z.boolean(),\n  toolOverrides: z.array(z.string()).optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().optional(),\n  timeoutSeconds: z.number().optional(),\n  phases: z.array(PhaseDefinitionSchema).optional(),\n  execution: ExecutionConfigSchema.optional(),\n  contextQueries: z.record(z.string(), z.array(ContextQuerySchema)).optional(),\n  schemaVersion: z.number().optional(),\n  orchestrator: OrchestratorConfigSchema.optional(),\n  schedule: TaskScheduleSchema.optional(),\n  /** Task-specific params with defaults. */\n  params: z.record(z.string(), z.union([z.string(), z.number(), 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package/dist/chunk-EVDQKYCG.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/daemon/team-context.ts","../src/db/queries/team-outbox.ts","../src/db/queries/sessions.ts"],"sourcesContent":["/**\n * Module-level state for team sync.\n *\n * Initialized once by the daemon on startup. Query modules import\n * `isTeamSyncEnabled()` and `getTeamMachineId()` to decide whether\n * to enqueue outbox records on write.\n */\n\nimport { SYNC_PROTOCOL_VERSION, DEFAULT_MACHINE_ID } from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Module state\n// ---------------------------------------------------------------------------\n\nlet teamSyncEnabled = false;\nlet teamMachineId = DEFAULT_MACHINE_ID;\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Initialize team context. Called once on daemon startup.\n */\nexport function initTeamContext(enabled: boolean, machineId: string): void {\n  teamSyncEnabled = enabled;\n  teamMachineId = machineId;\n}\n\n/**\n * Whether team sync is currently enabled.\n *\n * Query modules check this before enqueuing outbox records.\n */\nexport function isTeamSyncEnabled(): boolean {\n  return teamSyncEnabled;\n}\n\n/**\n * The machine ID for this instance.\n */\nexport function getTeamMachineId(): string {\n  return teamMachineId;\n}\n\n/**\n * The sync protocol version in use.\n */\nexport function getTeamSyncProtocolVersion(): number {\n  return SYNC_PROTOCOL_VERSION;\n}\n\n/**\n * Reset team context (for testing).\n */\nexport function resetTeamContext(): void {\n  teamSyncEnabled = false;\n  teamMachineId = DEFAULT_MACHINE_ID;\n}\n","/**\n * Team outbox CRUD query helpers.\n *\n * The outbox pattern: write paths enqueue records here when team sync is enabled.\n * The sync client flushes pending records in batches to the Cloudflare Worker.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { isTeamSyncEnabled, getTeamMachineId } from '@myco/daemon/team-context.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Max records returned per listPending call. */\nconst BURST_BATCH_SIZE = 200;\n\n/** Age in seconds after which sent records are pruned (24 hours). */\nconst SENT_PRUNE_AGE_SECONDS = 86_400;\n\n/** Max retry attempts before a record is dead-lettered. */\nexport const MAX_OUTBOX_RETRIES = 10;\n\n/** Milliseconds-per-second multiplier for epoch math. */\nconst MS_PER_SECOND = 1000;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required when enqueuing an outbox record. */\nexport interface OutboxInsert {\n  table_name: string;\n  row_id: string;\n  operation?: string;\n  payload: string;\n  machine_id: string;\n  created_at: number;\n}\n\n/** Row shape returned from outbox queries. */\nexport interface OutboxRow {\n  id: number;\n  table_name: string;\n  row_id: string;\n  operation: string;\n  payload: string;\n  machine_id: string;\n  created_at: number;\n  sent_at: number | null;\n  retry_count: number;\n  last_attempt_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst OUTBOX_COLUMNS = [\n  'id',\n  'table_name',\n  'row_id',\n  'operation',\n  'payload',\n  'machine_id',\n  'created_at',\n  'sent_at',\n  'retry_count',\n  'last_attempt_at',\n] as const;\n\nconst SELECT_COLUMNS = OUTBOX_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed OutboxRow. */\nfunction toOutboxRow(row: Record<string, unknown>): OutboxRow {\n  return {\n    id: row.id as number,\n    table_name: row.table_name as string,\n    row_id: row.row_id as string,\n    operation: row.operation as string,\n    payload: row.payload as string,\n    machine_id: row.machine_id as string,\n    created_at: row.created_at as number,\n    sent_at: (row.sent_at as number) ?? null,\n    retry_count: (row.retry_count as number) ?? 0,\n    last_attempt_at: (row.last_attempt_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Convenience helper — used by query modules\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue a row for team sync if sync is enabled.\n *\n * Centralizes the if-enabled / enqueue / serialize pattern that every\n * write-path query module previously duplicated inline.\n */\nexport function syncRow(tableName: string, row: { id: string | number; created_at?: number }): void {\n  if (!isTeamSyncEnabled()) return;\n  enqueueOutbox({\n    table_name: tableName,\n    row_id: String(row.id),\n    payload: JSON.stringify(row),\n    machine_id: getTeamMachineId(),\n    created_at: row.created_at ?? Math.floor(Date.now() / 1000),\n  });\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue a record into the team outbox for later sync.\n *\n * Inserted with `sent_at = NULL` (pending).\n */\nexport function enqueueOutbox(data: OutboxInsert): OutboxRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO team_outbox (\n       table_name, row_id, operation, payload, machine_id, created_at\n     ) VALUES (?, ?, ?, ?, ?, ?)`,\n  ).run(\n    data.table_name,\n    data.row_id,\n    data.operation ?? 'upsert',\n    data.payload,\n    data.machine_id,\n    data.created_at,\n  );\n\n  const id = Number(info.lastInsertRowid);\n\n  return toOutboxRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM team_outbox WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * List pending outbox records (oldest-first).\n *\n * Uses burst sizing: fetches BURST_BATCH_SIZE rows and returns them all.\n * If fewer than BURST_THRESHOLD rows come back, callers get a normal-size\n * batch; if more, the full burst. This avoids a separate COUNT query.\n */\nexport function listPending(limit?: number): OutboxRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM team_outbox\n     WHERE sent_at IS NULL AND retry_count < ?\n     ORDER BY created_at ASC\n     LIMIT ?`,\n  ).all(MAX_OUTBOX_RETRIES, limit ?? BURST_BATCH_SIZE) as Record<string, unknown>[];\n\n  return rows.map(toOutboxRow);\n}\n\n/**\n * Mark outbox records as sent by setting sent_at.\n */\nexport function markSent(ids: number[], sentAt: number): void {\n  if (ids.length === 0) return;\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET sent_at = ?\n     WHERE id IN (${placeholders})`,\n  ).run(sentAt, ...ids);\n}\n\n/**\n * Reset sent_at to NULL for records that need to be retried.\n *\n * This allows the sync client to re-enqueue specific records for retry.\n */\nexport function markForRetry(ids: number[]): void {\n  if (ids.length === 0) return;\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET sent_at = NULL\n     WHERE id IN (${placeholders})`,\n  ).run(...ids);\n}\n\n/**\n * Increment retry_count and set last_attempt_at for failed outbox records.\n *\n * @returns IDs of records that have now reached MAX_OUTBOX_RETRIES (newly dead-lettered).\n */\nexport function incrementRetryCount(ids: number[], attemptAt: number): number[] {\n  if (ids.length === 0) return [];\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET retry_count = retry_count + 1, last_attempt_at = ?\n     WHERE id IN (${placeholders})`,\n  ).run(attemptAt, ...ids);\n\n  // Return IDs that just hit the threshold\n  const deadLettered = db.prepare(\n    `SELECT id FROM team_outbox\n     WHERE id IN (${placeholders}) AND retry_count >= ?`,\n  ).all(...ids, MAX_OUTBOX_RETRIES) as Array<{ id: number }>;\n\n  return deadLettered.map((r) => r.id);\n}\n\n/**\n * Reset all dead-lettered records back to pending for retry.\n *\n * @returns the number of records reset.\n */\nexport function retryDeadLettered(): number {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE team_outbox\n     SET retry_count = 0, last_attempt_at = NULL\n     WHERE sent_at IS NULL AND retry_count >= ?`,\n  ).run(MAX_OUTBOX_RETRIES);\n\n  return info.changes;\n}\n\n/**\n * Count dead-lettered outbox records (exceeded max retries, never sent).\n */\nexport function countDeadLettered(): number {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count >= ?`,\n  ).get(MAX_OUTBOX_RETRIES) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Prune old outbox records.\n *\n * Removes sent records older than 24 hours.\n *\n * @returns the number of records deleted.\n */\nexport function pruneOld(): number {\n  const db = getDatabase();\n  const cutoff = Math.floor(Date.now() / MS_PER_SECOND) - SENT_PRUNE_AGE_SECONDS;\n\n  const info = db.prepare(\n    `DELETE FROM team_outbox\n     WHERE sent_at IS NOT NULL AND sent_at < ?`,\n  ).run(cutoff);\n\n  return info.changes;\n}\n\n/**\n * Count pending (unsent) outbox records.\n */\nexport function countPending(): number {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count < ?`,\n  ).get(MAX_OUTBOX_RETRIES) as { count: number };\n\n  return row.count;\n}\n\n// ---------------------------------------------------------------------------\n// Source-row sync bookkeeping\n// ---------------------------------------------------------------------------\n\n/** Tables eligible for backfill/sync (must have id, machine_id, synced_at columns). */\nconst BACKFILL_TABLES = [\n  'sessions',\n  'prompt_batches',\n  'spores',\n  'entities',\n  'graph_edges',\n  'resolution_events',\n  'plans',\n  'artifacts',\n  'digest_extracts',\n  'skill_candidates',\n  'skill_records',\n] as const;\n// entity_mentions excluded — no `id` column (composite key entity_id+note_id+note_type)\n// skill_usage excluded — no `synced_at` column (syncs via syncRow on insert)\n\nconst BACKFILL_TABLE_SET = new Set<string>(BACKFILL_TABLES);\n\n/**\n * Mark source rows as synced after successful outbox flush.\n *\n * Groups outbox records by table_name, then sets `synced_at` on the\n * corresponding source rows. This closes the re-enqueue loop: once\n * synced_at is non-NULL, `backfillUnsynced` skips the row even after\n * the outbox entry is pruned.\n */\nexport function markSourceRowsSynced(records: OutboxRow[], syncedAt: number): void {\n  const db = getDatabase();\n\n  // Group row_ids by table\n  const byTable = new Map<string, string[]>();\n  for (const rec of records) {\n    if (!BACKFILL_TABLE_SET.has(rec.table_name)) continue;\n    const ids = byTable.get(rec.table_name) ?? [];\n    ids.push(rec.row_id);\n    byTable.set(rec.table_name, ids);\n  }\n\n  for (const [table, ids] of byTable) {\n    const placeholders = ids.map(() => '?').join(', ');\n    db.prepare(\n      `UPDATE ${table} SET synced_at = ? WHERE id IN (${placeholders}) AND synced_at IS NULL`,\n    ).run(syncedAt, ...ids);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Backfill\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue all unsynced records across all synced tables into the outbox.\n *\n * Scans each table for rows where `synced_at IS NULL`, serializes the full\n * row as JSON, and inserts into the outbox. Idempotent — re-running only\n * picks up rows not yet in the outbox (checked via existing outbox entries).\n *\n * @returns the total number of records enqueued.\n */\nexport function backfillUnsynced(machineId: string): number {\n  const db = getDatabase();\n  let total = 0;\n\n  const now = Math.floor(Date.now() / MS_PER_SECOND);\n\n  // Process one table at a time in separate transactions to avoid long locks\n  for (const table of BACKFILL_TABLES) {\n    const rows = db.prepare(\n      `SELECT * FROM ${table}\n       WHERE synced_at IS NULL\n       AND NOT EXISTS (\n         SELECT 1 FROM team_outbox\n         WHERE team_outbox.table_name = ? AND team_outbox.row_id = CAST(${table}.id AS TEXT)\n       )`,\n    ).all(table) as Record<string, unknown>[];\n\n    if (rows.length === 0) continue;\n\n    const insertBatch = db.transaction((batchRows: Record<string, unknown>[]) => {\n      const stmt = db.prepare(\n        `INSERT INTO team_outbox (table_name, row_id, operation, payload, machine_id, created_at)\n         VALUES (?, ?, 'upsert', ?, ?, ?)`,\n      );\n      for (const row of batchRows) {\n        stmt.run(table, String(row.id), JSON.stringify(row), machineId, now);\n      }\n    });\n\n    insertBatch(rows);\n    total += rows.length;\n  }\n\n  return total;\n}\n\n","/**\n * Session CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { getTeamMachineId } from '@myco/daemon/team-context.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of sessions returned by listSessions when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Session status value when a session is closed normally. */\nconst STATUS_COMPLETED = 'completed';\n\n/** Default session status for new sessions. */\nconst DEFAULT_STATUS = 'active';\n\n/** Default prompt count for new sessions. */\nconst DEFAULT_PROMPT_COUNT = 0;\n\n/** Default tool count for new sessions. */\nconst DEFAULT_TOOL_COUNT = 0;\n\n/** Default processed flag for new sessions. */\nconst DEFAULT_PROCESSED = 0;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting/upserting a session. */\nexport interface SessionInsert {\n  id: string;\n  agent: string;\n  started_at: number;\n  created_at: number;\n  user?: string | null;\n  project_root?: string | null;\n  branch?: string | null;\n  ended_at?: number | null;\n  status?: string;\n  prompt_count?: number;\n  tool_count?: number;\n  title?: string | null;\n  summary?: string | null;\n  transcript_path?: string | null;\n  parent_session_id?: string | null;\n  parent_session_reason?: string | null;\n  processed?: number;\n  content_hash?: string | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from session queries (all columns). */\nexport interface SessionRow {\n  id: string;\n  agent: string;\n  user: string | null;\n  project_root: string | null;\n  branch: string | null;\n  started_at: number;\n  ended_at: number | null;\n  status: string;\n  prompt_count: number;\n  tool_count: number;\n  title: string | null;\n  summary: string | null;\n  transcript_path: string | null;\n  parent_session_id: string | null;\n  parent_session_reason: string | null;\n  processed: number;\n  content_hash: string | null;\n  embedded: number;\n  created_at: number;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Updatable fields for `updateSession`. */\nexport interface SessionUpdate {\n  agent?: string;\n  user?: string | null;\n  project_root?: string | null;\n  branch?: string | null;\n  ended_at?: number | null;\n  status?: string;\n  prompt_count?: number;\n  tool_count?: number;\n  title?: string | null;\n  summary?: string | null;\n  transcript_path?: string | null;\n  parent_session_id?: string | null;\n  parent_session_reason?: string | null;\n  processed?: number;\n  content_hash?: string | null;\n}\n\n/** Filter options for `listSessions`. */\nexport interface ListSessionsOptions {\n  limit?: number;\n  offset?: number;\n  status?: string;\n  agent?: string;\n  search?: string;\n  /** Filter to sessions that ran on this git branch. */\n  branch?: string;\n  /** Filter to sessions authored by this user. */\n  user?: string;\n  /** Filter to this exact session id (used for plan→session resolution). */\n  id?: string;\n  /** Only return sessions created after this epoch-seconds timestamp. */\n  since?: number;\n  /**\n   * When explicitly `false` and no `status` filter is set, exclude sessions\n   * still in `status = 'active'` — intelligence-task reads opt in to this.\n   * Defaults permissive so UI listings keep showing in-flight sessions.\n   */\n  includeActive?: boolean;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst SESSION_COLUMNS = [\n  'id',\n  'agent',\n  '\"user\"',\n  'project_root',\n  'branch',\n  'started_at',\n  'ended_at',\n  'status',\n  'prompt_count',\n  'tool_count',\n  'title',\n  'summary',\n  'transcript_path',\n  'parent_session_id',\n  'parent_session_reason',\n  'processed',\n  'content_hash',\n  'embedded',\n  'created_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = SESSION_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/**\n * Normalize a SQLite result row into a typed SessionRow.\n *\n * The quoted \"user\" column comes back as `user` in the result object.\n */\nfunction toSessionRow(row: Record<string, unknown>): SessionRow {\n  return {\n    id: row.id as string,\n    agent: row.agent as string,\n    user: (row.user as string) ?? null,\n    project_root: (row.project_root as string) ?? null,\n    branch: (row.branch as string) ?? null,\n    started_at: row.started_at as number,\n    ended_at: (row.ended_at as number) ?? null,\n    status: row.status as string,\n    prompt_count: row.prompt_count as number,\n    tool_count: row.tool_count as number,\n    title: (row.title as string) ?? null,\n    summary: (row.summary as string) ?? null,\n    transcript_path: (row.transcript_path as string) ?? null,\n    parent_session_id: (row.parent_session_id as string) ?? null,\n    parent_session_reason: (row.parent_session_reason as string) ?? null,\n    processed: row.processed as number,\n    content_hash: (row.content_hash as string) ?? null,\n    embedded: (row.embedded as number) ?? 0,\n    created_at: row.created_at as number,\n    machine_id: (row.machine_id as string) ?? 'local',\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a session or update it if the id already exists.\n *\n * On conflict the row is updated with the values from `data`, preserving\n * any columns not supplied via COALESCE with EXCLUDED values.\n */\nexport function upsertSession(data: SessionInsert): SessionRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO sessions (\n       id, agent, \"user\", project_root, branch,\n       started_at, ended_at, status, prompt_count, tool_count,\n       title, summary, transcript_path,\n       parent_session_id, parent_session_reason,\n       processed, content_hash, created_at, machine_id\n     ) VALUES (\n       ?, ?, ?, ?, ?,\n       ?, ?, ?, ?, ?,\n       ?, ?, ?,\n       ?, ?,\n       ?, ?, ?, ?\n     )\n     ON CONFLICT (id) DO UPDATE SET\n       agent                 = EXCLUDED.agent,\n       \"user\"                = EXCLUDED.\"user\",\n       project_root          = EXCLUDED.project_root,\n       branch                = EXCLUDED.branch,\n       started_at            = EXCLUDED.started_at,\n       ended_at              = COALESCE(EXCLUDED.ended_at, sessions.ended_at),\n       status                = COALESCE(EXCLUDED.status, sessions.status),\n       prompt_count          = CASE WHEN ? THEN EXCLUDED.prompt_count ELSE sessions.prompt_count END,\n       tool_count            = CASE WHEN ? THEN EXCLUDED.tool_count ELSE sessions.tool_count END,\n       title                 = COALESCE(EXCLUDED.title, sessions.title),\n       summary               = COALESCE(EXCLUDED.summary, sessions.summary),\n       transcript_path       = COALESCE(EXCLUDED.transcript_path, sessions.transcript_path),\n       parent_session_id     = EXCLUDED.parent_session_id,\n       parent_session_reason = EXCLUDED.parent_session_reason,\n       processed             = COALESCE(EXCLUDED.processed, sessions.processed),\n       content_hash          = EXCLUDED.content_hash`,\n  ).run(\n    data.id,\n    data.agent,\n    data.user ?? null,\n    data.project_root ?? null,\n    data.branch ?? null,\n    data.started_at,\n    data.ended_at ?? null,\n    data.status ?? DEFAULT_STATUS,\n    data.prompt_count ?? DEFAULT_PROMPT_COUNT,\n    data.tool_count ?? DEFAULT_TOOL_COUNT,\n    data.title ?? null,\n    data.summary ?? null,\n    data.transcript_path ?? null,\n    data.parent_session_id ?? null,\n    data.parent_session_reason ?? null,\n    data.processed ?? DEFAULT_PROCESSED,\n    data.content_hash ?? null,\n    data.created_at,\n    data.machine_id ?? getTeamMachineId(),\n    data.prompt_count !== undefined ? 1 : 0,\n    data.tool_count !== undefined ? 1 : 0,\n  );\n\n  const row = toSessionRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM sessions WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n\n  syncRow('sessions', row);\n\n  return row;\n}\n\n/**\n * Retrieve a single session by id.\n *\n * @returns the session row, or null if not found.\n */\nexport function getSession(id: string): SessionRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM sessions WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toSessionRow(row);\n}\n\n/** Build WHERE clause and bound params from session filter options. */\nfunction buildSessionsWhere(\n  options: Omit<ListSessionsOptions, 'limit' | 'offset'>,\n): { where: string; params: unknown[] } {\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  }\n\n  if (options.agent !== undefined) {\n    conditions.push(`agent = ?`);\n    params.push(options.agent);\n  }\n\n  if (options.branch !== undefined) {\n    conditions.push(`branch = ?`);\n    params.push(options.branch);\n  }\n\n  if (options.user !== undefined) {\n    conditions.push(`\"user\" = ?`);\n    params.push(options.user);\n  }\n\n  if (options.id !== undefined) {\n    conditions.push(`id = ?`);\n    params.push(options.id);\n  }\n\n  if (options.search !== undefined && options.search.length > 0) {\n    conditions.push(`(title LIKE ? OR id LIKE ?)`);\n    const pattern = `%${options.search}%`;\n    params.push(pattern, pattern);\n  }\n  if (options.since !== undefined) {\n    conditions.push('created_at > ?');\n    params.push(options.since);\n  }\n\n  // Exclude active sessions only when the caller explicitly opts in and\n  // hasn't already constrained `status`. Intelligence-task reads set this\n  // to avoid picking up in-flight work; UI/CLI leave it unset.\n  if (options.includeActive === false && options.status === undefined) {\n    conditions.push(`status != 'active'`);\n  }\n\n  return {\n    where: conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '',\n    params,\n  };\n}\n\n/**\n * List sessions with optional filters, ordered by created_at DESC.\n */\nexport function listSessions(\n  options: ListSessionsOptions = {},\n): SessionRow[] {\n  const db = getDatabase();\n  const { where, params } = buildSessionsWhere(options);\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM sessions\n     ${where}\n     ORDER BY created_at DESC\n     LIMIT ?\n     OFFSET ?`,\n  ).all(...params, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toSessionRow);\n}\n\n/**\n * Count sessions matching optional filters (for pagination totals).\n */\nexport function countSessions(\n  options: Omit<ListSessionsOptions, 'limit' | 'offset'> = {},\n): number {\n  const db = getDatabase();\n  const { where, params } = buildSessionsWhere(options);\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM sessions ${where}`,\n  ).get(...params) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Return the set of session IDs currently in `status = 'active'`.\n *\n * Used by the semantic-search path, which can't apply a SQL join against\n * session status (the vector store is a separate concern), so it filters\n * results in-memory against this set instead. Bounded by the number of\n * concurrent in-flight sessions — typically small.\n */\nexport function getActiveSessionIds(): Set<string> {\n  const db = getDatabase();\n  const rows = db.prepare(\n    `SELECT id FROM sessions WHERE status = 'active'`,\n  ).all() as Array<{ id: string }>;\n  return new Set(rows.map((r) => r.id));\n}\n\n/**\n * Flip a session back to `status = 'active'` if it's currently `'completed'`.\n *\n * Called on live user activity (`user_prompt` events) so a session that was\n * auto-completed by the stale sweep or manually completed via the API snaps\n * back to active transparently when the user resumes. No-op for sessions\n * that are already active or don't exist.\n *\n * The `ended_at` column is intentionally preserved — it records the most\n * recent completion time, and the next completion will overwrite it.\n *\n * @returns true if a row was updated (session was completed and is now active)\n */\nexport function reactivateSessionIfCompleted(id: string): boolean {\n  const db = getDatabase();\n  const info = db.prepare(\n    `UPDATE sessions SET status = 'active' WHERE id = ? AND status = 'completed'`,\n  ).run(id);\n  if (info.changes === 0) return false;\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM sessions WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n  if (row) syncRow('sessions', toSessionRow(row));\n\n  return true;\n}\n\n/**\n * Update specific fields on an existing session.\n *\n * @returns the updated row, or null if the session does not exist.\n */\nexport function updateSession(\n  id: string,\n  updates: SessionUpdate,\n): SessionRow | null {\n  const db = getDatabase();\n\n  const setClauses: string[] = [];\n  const params: unknown[] = [];\n\n  const fieldMap: Record<string, string> = {\n    agent: 'agent',\n    user: '\"user\"',\n    project_root: 'project_root',\n    branch: 'branch',\n    ended_at: 'ended_at',\n    status: 'status',\n    prompt_count: 'prompt_count',\n    tool_count: 'tool_count',\n    title: 'title',\n    summary: 'summary',\n    transcript_path: 'transcript_path',\n    parent_session_id: 'parent_session_id',\n    parent_session_reason: 'parent_session_reason',\n    processed: 'processed',\n    content_hash: 'content_hash',\n  };\n\n  for (const [key, column] of Object.entries(fieldMap)) {\n    if (key in updates) {\n      setClauses.push(`${column} = ?`);\n      params.push((updates as Record<string, unknown>)[key] ?? null);\n    }\n  }\n\n  if (setClauses.length === 0) return getSession(id);\n\n  params.push(id);\n\n  db.prepare(\n    `UPDATE sessions\n     SET ${setClauses.join(', ')}\n     WHERE id = ?`,\n  ).run(...params);\n\n  const updated = getSession(id);\n\n  if (updated) syncRow('sessions', updated);\n\n  return updated;\n}\n\n/**\n * Atomically increment tool_count for a session.\n *\n * Uses SQL `tool_count + 1` to avoid read-modify-write races.\n */\nexport function incrementSessionToolCount(id: string): void {\n  const db = getDatabase();\n  db.prepare(\n    `UPDATE sessions SET tool_count = COALESCE(tool_count, 0) + 1 WHERE id = ?`,\n  ).run(id);\n}\n\n/**\n * Close a session — set status to 'completed' and record the end time.\n *\n * @returns the updated row, or null if the session does not exist.\n */\nexport function closeSession(\n  id: string,\n  endedAt: number,\n): SessionRow | null {\n  const db = getDatabase();\n\n  db.prepare(\n    `UPDATE sessions\n     SET status = ?, ended_at = ?\n     WHERE id = ?`,\n  ).run(STATUS_COMPLETED, endedAt, id);\n\n  const closed = getSession(id);\n\n  if (closed) syncRow('sessions', closed);\n\n  return closed;\n}\n\n/**\n * Delete a session and all its child rows (batches, activities, attachments).\n *\n * No ON DELETE CASCADE in the schema, so we delete children first.\n * Returns true if the session existed and was deleted.\n */\nexport function deleteSession(id: string): boolean {\n  const db = getDatabase();\n\n  db.prepare(`DELETE FROM activities WHERE session_id = ?`).run(id);\n  db.prepare(`DELETE FROM attachments WHERE session_id = ?`).run(id);\n  db.prepare(`DELETE FROM prompt_batches WHERE session_id = ?`).run(id);\n  const info = db.prepare(`DELETE FROM sessions WHERE id = ?`).run(id);\n\n  return info.changes > 0;\n}\n\n// ---------------------------------------------------------------------------\n// Cascade delete + impact query\n// ---------------------------------------------------------------------------\n\n/** Counts of related data that would be affected by a session delete. */\nexport interface SessionImpact {\n  promptCount: number;\n  sporeCount: number;\n  attachmentCount: number;\n  graphEdgeCount: number;\n}\n\n/** Result of a cascade delete operation. */\nexport interface DeleteCascadeResult {\n  deleted: boolean;\n  counts: {\n    prompts: number;\n    spores: number;\n    attachments: number;\n    graphEdges: number;\n    resolutionEvents: number;\n  };\n  /** Spore IDs that were deleted (needed for vault file + vector cleanup). */\n  deletedSporeIds: string[];\n  /** Attachment file paths that were deleted from DB (needed for disk cleanup). */\n  deletedAttachmentPaths: string[];\n}\n\n/**\n * Get counts of all data related to a session, for pre-delete impact display.\n */\nexport function getSessionImpact(sessionId: string): SessionImpact {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT\n       (SELECT COUNT(*) FROM prompt_batches WHERE session_id = ?) AS promptCount,\n       (SELECT COUNT(*) FROM spores WHERE session_id = ?) AS sporeCount,\n       (SELECT COUNT(*) FROM attachments WHERE session_id = ?) AS attachmentCount,\n       (SELECT COUNT(*) FROM graph_edges WHERE session_id = ?) AS graphEdgeCount`,\n  ).get(sessionId, sessionId, sessionId, sessionId) as SessionImpact;\n\n  return row;\n}\n\n/**\n * Delete a session and ALL related data in a single transaction.\n *\n * Returns counts of deleted rows and IDs needed for post-transaction\n * cleanup (vault files, embedding vectors).\n */\nexport function deleteSessionCascade(sessionId: string): DeleteCascadeResult {\n  const db = getDatabase();\n\n  const zeroCounts: DeleteCascadeResult = {\n    deleted: false,\n    counts: { prompts: 0, spores: 0, attachments: 0, graphEdges: 0, resolutionEvents: 0 },\n    deletedSporeIds: [],\n    deletedAttachmentPaths: [],\n  };\n\n  // Check session exists first\n  const exists = db.prepare(`SELECT id FROM sessions WHERE id = ?`).get(sessionId);\n  if (!exists) return zeroCounts;\n\n  // Collect IDs/paths needed for post-transaction cleanup before deleting.\n  // Spores can reference prompt_batches from a different session (cross-session\n  // spore linkage), so we must also collect spores linked via prompt_batch_id.\n  const sporeIds = (db.prepare(\n    `SELECT id FROM spores\n     WHERE session_id = ?\n        OR prompt_batch_id IN (SELECT id FROM prompt_batches WHERE session_id = ?)`,\n  ).all(sessionId, sessionId) as { id: string }[]).map((r) => r.id);\n\n  const attachmentPaths = (db.prepare(\n    `SELECT file_path FROM attachments WHERE session_id = ?`,\n  ).all(sessionId) as { file_path: string }[]).map((r) => r.file_path);\n\n  // Run all deletes in a single transaction.\n  //\n  // Order matters — foreign_keys = ON is set in client.ts, so every DELETE\n  // is checked immediately. Child rows must be removed before their parents:\n  //   - spores.prompt_batch_id     → prompt_batches(id)   [spores BEFORE prompt_batches]\n  //   - plans.prompt_batch_id      → prompt_batches(id)   [plans BEFORE prompt_batches]\n  //   - resolution_events.spore_id → spores(id)           [resolution_events BEFORE spores]\n  //   - skill_usage.session_id     → sessions(id) NOT NULL\n  //   - plans.session_id           → sessions(id)\n  // resolution_events can reference spores across sessions (e.g. a later\n  // session supersedes an earlier session's spore), so we match by either\n  // session_id OR spore_id-in-this-session to catch cross-session references.\n  //\n  // Spores can also reference prompt_batches from a different session\n  // (cross-session prompt_batch_id linkage). We must delete those spores\n  // BEFORE deleting prompt_batches to avoid FK violations.\n  const result = db.transaction(() => {\n    db.prepare(`DELETE FROM activities WHERE session_id = ?`).run(sessionId);\n    const attachments = db.prepare(`DELETE FROM attachments WHERE session_id = ?`).run(sessionId);\n    db.prepare(`DELETE FROM plans WHERE session_id = ?`).run(sessionId);\n    db.prepare(`DELETE FROM skill_usage WHERE session_id = ?`).run(sessionId);\n    const resEvents = db.prepare(\n      `DELETE FROM resolution_events\n       WHERE session_id = ?\n          OR spore_id IN (\n            SELECT id FROM spores\n            WHERE session_id = ?\n               OR prompt_batch_id IN (SELECT id FROM prompt_batches WHERE session_id = ?)\n          )`,\n    ).run(sessionId, sessionId, sessionId);\n    const edges = db.prepare(`DELETE FROM graph_edges WHERE session_id = ?`).run(sessionId);\n    const spores = db.prepare(\n      `DELETE FROM spores\n       WHERE session_id = ?\n     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package/dist/chunk-FLLBJLHM.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/constants/update.ts","../src/constants.ts"],"sourcesContent":["import path from 'node:path';\nimport os from 'node:os';\n\n/** npm registry base URL for Myco packages. */\nexport const NPM_REGISTRY_BASE_URL = 'https://registry.npmjs.org';\n\n/** Global Myco directory for machine-wide state. */\nexport const MYCO_GLOBAL_DIR = path.join(os.homedir(), '.myco');\n\n/** Path to the cached update check result. */\nexport const UPDATE_CHECK_CACHE_PATH = path.join(MYCO_GLOBAL_DIR, 'last-update-check.json');\n\n/** Path to the update configuration file (channel, interval). */\nexport const UPDATE_CONFIG_PATH = path.join(MYCO_GLOBAL_DIR, 'update.yaml');\n\n/** Path to the update error file (written by update script on failure). */\nexport const UPDATE_ERROR_PATH = path.join(MYCO_GLOBAL_DIR, 'update-error.json');\n\n/** Filename for the version stamp written by `myco update` (lives inside vault .myco/). */\nexport const UPDATE_STAMP_FILENAME = 'last-update-version';\n\n/** Filename for the restart reason signal file (lives inside vault .myco/). */\nexport const RESTART_REASON_FILENAME = 'restart-reason.json';\n\n/** Default check interval in hours. */\nexport const UPDATE_CHECK_INTERVAL_HOURS = 6;\n\n/** Milliseconds per hour. */\nexport const MS_PER_HOUR = 3_600_000;\n\n/** Primary Myco npm package name. */\nexport const NPM_PACKAGE_NAME = '@goondocks/myco';\n\n/** Optional standalone Myco Team package name. */\nexport const TEAM_PACKAGE_NAME = '@goondocks/myco-team';\n\n/** Optional standalone Myco Collective package name. */\nexport const COLLECTIVE_PACKAGE_NAME = '@goondocks/myco-collective';\n\n/** Global-package update targets shown in the Operations UI. */\nexport const UPDATE_PACKAGES = [\n  { id: 'myco', packageName: NPM_PACKAGE_NAME, displayName: 'Myco' },\n  { id: 'myco-team', packageName: TEAM_PACKAGE_NAME, displayName: 'Myco Team' },\n  { id: 'myco-collective', packageName: COLLECTIVE_PACKAGE_NAME, displayName: 'Myco Collective' },\n] as const;\nexport type UpdatePackageId = (typeof UPDATE_PACKAGES)[number]['id'];\n\n/** Delay in seconds before update script starts (allows daemon to exit). */\nexport const UPDATE_SCRIPT_DELAY_SECONDS = 2;\n\n/** Valid release channels. */\nexport const RELEASE_CHANNELS = ['stable', 'beta'] as const;\nexport type ReleaseChannel = (typeof RELEASE_CHANNELS)[number];\n\n/** Default release channel. */\nexport const DEFAULT_RELEASE_CHANNEL: ReleaseChannel = 'stable';\n","/**\n * Shared constants for the Myco codebase.\n * Per CLAUDE.md: \"No Magic Literals — Numeric and string constants\n * MUST NOT appear inline in logic.\"\n */\n\nexport { LOG_KINDS, type LogKind, kindToComponent } from './constants/log-kinds.js';\n\n// --- Agent phase prompt composition ---\n/**\n * Maximum chars per phase summary passed to subsequent phases.\n * Set to 4000 to ensure the digest-assess phase findings pass\n * untruncated to parallel tier phases.\n */\nexport const PHASE_SUMMARY_MAX_CHARS = 4000;\n\n// --- Token estimation ---\n/** Approximate characters per token for the chars/4 heuristic. */\nexport const CHARS_PER_TOKEN = 4;\n\n/** Estimate token count from character length using the CHARS_PER_TOKEN heuristic. */\nexport function estimateTokens(text: string): number {\n  return Math.ceil(text.length / CHARS_PER_TOKEN);\n}\n\n// --- Time (primitives — must precede derived constants) ---\n/** Milliseconds per second. */\nexport const MS_PER_SECOND = 1000;\n\n// --- Embedding ---\n/** Max characters of text sent to the embedding model. */\nexport const EMBEDDING_INPUT_LIMIT = 8000;\n\n/** Max rows per embedding worker cycle. */\nexport const EMBEDDING_BATCH_SIZE = 10;\n\n/** Content hash algorithm for staleness detection. */\nexport const CONTENT_HASH_ALGORITHM = 'sha256';\n\n// --- Truncation limits (display/preview) ---\n/** Max chars for a user prompt preview in event summaries. */\nexport const PROMPT_PREVIEW_CHARS = 300;\n/** Max chars for an AI response preview in event summaries. */\nexport const AI_RESPONSE_PREVIEW_CHARS = 500;\n/** Max chars for a command string preview. */\nexport const COMMAND_PREVIEW_CHARS = 80;\n/** Max chars for a content snippet in search results. */\nexport const CONTENT_SNIPPET_CHARS = 120;\n/** Max chars for a tool output preview in hooks. */\nexport const TOOL_OUTPUT_PREVIEW_CHARS = 200;\n/** Max chars for a session summary preview in MCP tools. */\nexport const SESSION_SUMMARY_PREVIEW_CHARS = 300;\n/** Max chars for a recall summary preview. */\nexport const RECALL_SUMMARY_PREVIEW_CHARS = 200;\n/** Max chars for search result and hydrated context previews. */\nexport const SEARCH_PREVIEW_CHARS = 300;\n\n// --- Log preview limits (short previews for structured log fields) ---\n/** Max chars for a user prompt preview in log entries. */\nexport const LOG_PROMPT_PREVIEW_CHARS = 50;\n/** Max chars for an assistant message preview in log entries. */\nexport const LOG_MESSAGE_PREVIEW_CHARS = 80;\n\n// --- Context injection layer budgets (chars, not tokens — used with .slice()) ---\nexport const CONTEXT_SESSION_PREVIEW_CHARS = 80;\nexport const CONTEXT_SPORE_PREVIEW_CHARS = 80;\n\n// --- Processor maxTokens budgets ---\n/** Response token budget for observation extraction. */\nexport const EXTRACTION_MAX_TOKENS = 2048;\n/** Response token budget for session summary. */\nexport const SUMMARY_MAX_TOKENS = 512;\n/** Response token budget for session title generation. */\nexport const TITLE_MAX_TOKENS = 32;\n\n// --- Timeouts ---\n/** Daemon client HTTP request timeout (ms). */\nexport const DAEMON_CLIENT_TIMEOUT_MS = 2000;\n/** Health check timeout (ms) — fail fast if daemon isn't responding. */\nexport const DAEMON_HEALTH_CHECK_TIMEOUT_MS = 500;\n/** LLM request timeout (ms). All LLM calls are background daemon work — no need to be aggressive. */\nexport const LLM_REQUEST_TIMEOUT_MS = 180_000;\n/** Embedding request timeout (ms). Embeddings run in background batch processing — generous timeout. */\nexport const EMBEDDING_REQUEST_TIMEOUT_MS = 60_000;\n/** Digest LLM request timeout (ms). Digest cycles use large context windows and may need model loading time. */\nexport const DIGEST_LLM_REQUEST_TIMEOUT_MS = 600_000;\n/** Stdin read timeout for hooks (ms). */\nexport const STDIN_TIMEOUT_MS = 100;\n/** Provider detection timeout for detect-providers CLI command (ms). */\nexport const PROVIDER_DETECT_TIMEOUT_MS = 3000;\n\n// --- Time ---\n/** Milliseconds in one day. */\nexport const MS_PER_DAY = 24 * 60 * 60 * 1000;\n\n/** Current Unix epoch in seconds. */\nexport function epochSeconds(): number {\n  return Math.floor(Date.now() / MS_PER_SECOND);\n}\n\n// --- Buffer cleanup ---\n/** Max age for stale buffer files before cleanup (ms). */\nexport const STALE_BUFFER_MAX_AGE_MS = 1 * MS_PER_DAY;\n\n// --- Retry backoff ---\n/** Retry delays for daemon health check (ms). */\nexport const DAEMON_HEALTH_RETRY_DELAYS = [100, 200, 400, 800, 1500];\n\n/** Grace period after daemon.json is written before stale checks can trigger a restart (ms).\n *  Prevents rapid restart loops from concurrent hooks or session reloads. */\nexport const DAEMON_STALE_GRACE_PERIOD_MS = 60_000;\n\n/** Grace period for SIGTERM before escalating to SIGKILL (ms).\n *  Gives the old daemon a chance to shut down cleanly, but force-kills\n *  to guarantee the configured port is reclaimed. */\nexport const DAEMON_EVICT_TIMEOUT_MS = 3000;\n/** Poll interval when waiting for an evicted daemon to die (ms). */\nexport const DAEMON_EVICT_POLL_MS = 100;\n\n// --- Slug limits ---\n/** Max length for slugified artifact IDs. */\n\n// --- Turn rendering ---\n/** Max file paths displayed per turn in session notes. */\nexport const TURN_MAX_FILES_DISPLAYED = 10;\n\n// --- Transcript mining ---\n/** Minimum content length to consider a transcript entry meaningful. */\nexport const MIN_TRANSCRIPT_CONTENT_LENGTH = 10;\n\n// --- Graph edge types (lineage — auto-created by daemon) ---\n/** Spore was extracted during this session. */\nexport const EDGE_TYPE_FROM_SESSION = 'FROM_SESSION';\n/** Spore was extracted from this prompt batch. */\nexport const EDGE_TYPE_EXTRACTED_FROM = 'EXTRACTED_FROM';\n/** Wisdom spore was derived from (consolidated) this source spore. */\nexport const EDGE_TYPE_DERIVED_FROM = 'DERIVED_FROM';\n/** Session contains this prompt batch. */\nexport const EDGE_TYPE_HAS_BATCH = 'HAS_BATCH';\n// --- Query defaults ---\n/** Default row limit for query module list operations. */\nexport const QUERY_DEFAULT_LIST_LIMIT = 100;\n/** Default LIMIT for paginated list queries. */\nexport const DEFAULT_LIST_LIMIT = 50;\n/** Default confidence score for graph edges. */\nexport const GRAPH_EDGE_DEFAULT_CONFIDENCE = 1.0;\n\n// --- Query limits ---\n/** Max recent sessions to check for lineage heuristics. */\nexport const LINEAGE_RECENT_SESSIONS_LIMIT = 5;\n/** Max related spores to query for session notes. */\nexport const RELATED_SPORES_LIMIT = 50;\n\n// --- Context injection ---\n/** Max spores to inject per prompt. */\nexport const PROMPT_CONTEXT_MAX_SPORES = 3;\n/** Minimum similarity score for prompt context injection (0-1). */\nexport const PROMPT_CONTEXT_MIN_SIMILARITY = 0.3;\n/** Max token budget for session-start context injection. */\nexport const SESSION_CONTEXT_MAX_TOKENS = 500;\n/** Max token budget for per-prompt context injection. */\nexport const PROMPT_CONTEXT_MAX_TOKENS = 300;\n/** Minimum prompt length to trigger context search. */\nexport const PROMPT_CONTEXT_MIN_LENGTH = 10;\n\n/** Over-fetch multiplier for vector search to compensate for post-filtering. */\nexport const PROMPT_VECTOR_OVER_FETCH = 2;\n\n// --- Spore status filtering ---\n/** Spore statuses excluded from search results and context injection. */\nexport const EXCLUDED_SPORE_STATUSES = new Set(['superseded', 'archived']);\n\n// --- Agent identity ---\n/** Default agent ID for the built-in intelligence agent. */\nexport const DEFAULT_AGENT_ID = 'myco-agent';\n/** Agent ID for user-initiated MCP operations. */\nexport const USER_AGENT_ID = 'user';\n/** Agent name for user-initiated MCP operations. */\nexport const USER_AGENT_NAME = 'User (MCP)';\n\n// --- MCP tool defaults ---\n/** Default result limit for myco_search. */\nexport const MCP_SEARCH_DEFAULT_LIMIT = 10;\n/** Default result limit for myco_sessions. */\nexport const MCP_SESSIONS_DEFAULT_LIMIT = 20;\n/** Default result limit for myco_logs. */\nexport const MCP_LOGS_DEFAULT_LIMIT = 50;\n/** Default result limit for myco_skills and myco_skill_candidates. */\nexport const MCP_SKILLS_DEFAULT_LIMIT = 50;\n\n// --- Feed ---\n/** Default number of entries returned by the activity feed. */\nexport const FEED_DEFAULT_LIMIT = 50;\n\n// --- Digest — Tiers ---\n/** Available token-budget tiers for digest synthesis. */\nexport const DIGEST_TIERS = [1500, 5000, 10000] as const;\nexport type DigestTier = (typeof DIGEST_TIERS)[number];\n\n// --- Digest — Context window minimums per tier ---\n/** Minimum context window (tokens) required to run a digest at a given tier. */\nexport const DIGEST_TIER_MIN_CONTEXT: Record<number, number> = {\n  1500: 6500,\n  5000: 18500,\n  10000: 30500,\n};\n\n// --- Digest — Substrate ---\n/** Default minimum substrate notes required before a digest cycle runs. */\nexport const DIGEST_MIN_NOTES_FOR_CYCLE = 10;\n\n/** Scoring weights by note type when selecting substrate for synthesis. */\nexport const DIGEST_SUBSTRATE_TYPE_WEIGHTS: Record<string, number> = {\n  session: 3,\n  spore: 3,\n  plan: 2,\n  artifact: 1,\n  team: 1,\n};\n\n// --- LLM reasoning control ---\n/** Reasoning mode for all Myco LLM calls. Suppresses chain-of-thought tokens from reasoning models. */\nexport const LLM_REASONING_MODE = 'off' as const;\n\n// --- Digest — System prompt overhead estimate ---\n\n// --- Vault intelligence ---\n/** Max candidate spores after post-filtering for supersession check. */\nexport const SUPERSESSION_CANDIDATE_LIMIT = 5;\n\n/** Over-fetch from vector index before post-filtering by status/type. */\nexport const SUPERSESSION_VECTOR_FETCH_LIMIT = 20;\n\n/** Max output tokens for supersession LLM evaluation. */\nexport const SUPERSESSION_MAX_TOKENS = 256;\n\n/** Similarity threshold for clustering related spores in batch agent processing. */\nexport const AGENT_CLUSTER_SIMILARITY = 0.75;\n\n// --- Search ---\n/** Default number of results returned by vector search and fullTextSearch. */\nexport const SEARCH_RESULTS_DEFAULT_LIMIT = 20;\n/** Minimum cosine similarity score for semantic search results (0-1). */\nexport const SEARCH_SIMILARITY_THRESHOLD = 0.3;\n\n// --- Pipeline processing ---\n/** Default page size for pipeline items API listing. */\nexport const PIPELINE_ITEMS_DEFAULT_LIMIT = 50;\n\n// --- Pipeline retry ---\n/** Max retries for parse (structural) pipeline failures — fail fast. */\nexport const PIPELINE_PARSE_MAX_RETRIES = 1;\n/** Exponential backoff multiplier for successive pipeline retries. */\nexport const PIPELINE_BACKOFF_MULTIPLIER = 4;\n\n// --- Pipeline stages (ordered) ---\nexport const PIPELINE_STAGES = ['capture', 'extraction', 'embedding', 'consolidation', 'digest'] as const;\nexport type PipelineStage = typeof PIPELINE_STAGES[number];\n\n// --- Pipeline statuses ---\nexport const PIPELINE_STATUSES = ['pending', 'processing', 'succeeded', 'failed', 'blocked', 'skipped', 'poisoned'] as const;\nexport type PipelineStatus = typeof PIPELINE_STATUSES[number];\n\n// --- Provider roles for circuit breakers ---\nexport const PIPELINE_PROVIDER_ROLES = ['llm', 'embedding', 'digest-llm'] as const;\nexport type PipelineProviderRole = typeof PIPELINE_PROVIDER_ROLES[number];\n\n// --- Stage to provider role mapping ---\nexport const STAGE_PROVIDER_MAP: Record<PipelineStage, PipelineProviderRole | null> = {\n  capture: null,\n  extraction: 'llm',\n  embedding: 'embedding',\n  consolidation: 'digest-llm',\n  digest: 'digest-llm',\n};\n\n/**\n * Stages processed by the pipeline tick timer.\n * Capture is handled at registration time, digest is gated by the metabolism timer.\n */\nexport const PIPELINE_TICK_STAGES: PipelineStage[] = ['extraction', 'embedding', 'consolidation'];\n\n// --- Item type to applicable stages ---\n// Sessions skip consolidation — consolidation applies to the spores\n// extracted FROM sessions, not the session work item itself.\n// Lineage detection stays outside the pipeline (fire-and-forget, non-critical).\nexport const ITEM_STAGE_MAP: Record<string, PipelineStage[]> = {\n  session: ['capture', 'extraction', 'embedding', 'digest'],\n  spore: ['capture', 'embedding', 'consolidation', 'digest'],\n  artifact: ['capture', 'embedding', 'digest'],\n};\n\n// --- User task registry ---\n/** Subdirectory within the vault for user-created task YAML files. */\nexport const USER_TASKS_DIR = 'tasks';\n\n/** Source label for user-created tasks. */\nexport const USER_TASK_SOURCE = 'user';\n\n/** Source label for built-in tasks shipped with the package. */\nexport const BUILT_IN_SOURCE = 'built-in';\n\n/** Task name validation pattern (lowercase, hyphens, digits). */\nexport const TASK_NAME_PATTERN = /^[a-z0-9][a-z0-9-]*[a-z0-9]$|^[a-z0-9]$/;\n\n/** Maximum length for task names. */\nexport const MAX_TASK_NAME_LENGTH = 50;\n\n// --- Automatic consolidation ---\n/** Minimum cluster size required before asking LLM to consolidate. */\nexport const CONSOLIDATION_MIN_CLUSTER_SIZE = 3;\n\n/** Over-fetch from vector index before post-filtering by status/type. */\nexport const CONSOLIDATION_VECTOR_FETCH_LIMIT = 20;\n\n/** Max output tokens for consolidation LLM synthesis.\n *  Must be large enough for the full JSON response including content field. */\nexport const CONSOLIDATION_MAX_TOKENS = 2048;\n\n// --- Power management ---\n/** PowerManager states valid for task scheduling (excludes deep_sleep which halts all ticks). */\nexport const SCHEDULABLE_POWER_STATES = ['active', 'idle', 'sleep'] as const;\nexport type SchedulablePowerState = typeof SCHEDULABLE_POWER_STATES[number];\n\n/** Time without activity before transitioning to idle (ms). */\nexport const POWER_IDLE_THRESHOLD_MS = 5 * 60 * MS_PER_SECOND;\n/** Time without activity before transitioning to sleep (ms). */\nexport const POWER_SLEEP_THRESHOLD_MS = 30 * 60 * MS_PER_SECOND;\n/** Time without activity before transitioning to deep sleep (ms). */\nexport const POWER_DEEP_SLEEP_THRESHOLD_MS = 90 * 60 * MS_PER_SECOND;\n/** Job cycle interval during active/idle states (ms). */\nexport const POWER_ACTIVE_INTERVAL_MS = 60 * MS_PER_SECOND;\n/** Job cycle interval during sleep state (ms). */\nexport const POWER_SLEEP_INTERVAL_MS = 5 * 60 * MS_PER_SECOND;\n\n// --- Session maintenance ---\n/** Time without new prompts before an active session is auto-completed (ms). */\nexport const STALE_SESSION_THRESHOLD_MS = 60 * 60 * MS_PER_SECOND;\n/**\n * Max prompt count for a session to be considered dead and auto-deleted.\n *\n * Set to 0: only sessions that were registered but never received a prompt\n * are eligible for dead-session cleanup. A session with even ONE real user\n * prompt has produced captured state worth preserving — the user did work,\n * the agent likely responded, tool calls may have happened, code may have\n * changed. Deleting such a session was a real data-loss failure mode seen\n * during opencode testing where a 1-prompt session that made an actual\n * committed code change was auto-deleted within a minute of TUI exit.\n */\nexport const DEAD_SESSION_MAX_PROMPTS = 0;\n\n// --- Init wizard ---\n/** Minimum Node.js major version required by Myco. */\nexport const MIN_NODE_MAJOR_VERSION = 22;\n\n/** Recommended context window for local intelligence models. */\nexport const RECOMMENDED_LOCAL_CONTEXT_WINDOW = 8192;\n\n/** Default Ollama embedding model recommended during init. */\nexport const DEFAULT_OLLAMA_EMBEDDING_MODEL = 'bge-m3';\n\n/** Default OpenAI embedding model recommended during init. */\nexport const DEFAULT_OPENAI_EMBEDDING_MODEL = 'text-embedding-3-small';\n\n// --- Sync protocol ---\n/** Protocol version for backup and team sync wire format. */\nexport const SYNC_PROTOCOL_VERSION = 1;\n\n// --- Team sync ---\n/** Default machine ID for rows created before multi-machine support. */\nexport const DEFAULT_MACHINE_ID = 'local';\n/** Prefix for team search result source attribution. */\nexport const TEAM_SOURCE_PREFIX = 'team:';\n/** Timeout for team search requests (ms). */\nexport const TEAM_SEARCH_TIMEOUT_MS = 3000;\n/** Timeout for team health check requests (ms). */\nexport const TEAM_HEALTH_TIMEOUT_MS = 5000;\n/** Secrets key for the team API key in secrets.env. */\nexport const TEAM_API_KEY_SECRET = 'MYCO_TEAM_API_KEY';\n/** Secrets key for the team MCP token in secrets.env. */\nexport const TEAM_MCP_TOKEN_SECRET = 'MYCO_TEAM_MCP_TOKEN';\n/** Secrets key for the Collective admin token in secrets.env. */\nexport const COLLECTIVE_ADMIN_TOKEN_SECRET = 'MYCO_COLLECTIVE_ADMIN_TOKEN';\n/** Secrets key for the Collective MCP token in secrets.env. */\nexport const COLLECTIVE_MCP_TOKEN_SECRET = 'MYCO_COLLECTIVE_MCP_TOKEN';\n/** Timeout for wrangler CLI commands (ms). */\nexport const WRANGLER_COMMAND_TIMEOUT_MS = 60_000;\n\n// --- HTTP response flush ---\n/** Delay before initiating shutdown — allows the HTTP response to flush. */\nexport const RESTART_RESPONSE_FLUSH_MS = 500;\n\n// --- Self-update ---\nexport {\n  NPM_REGISTRY_BASE_URL,\n  MYCO_GLOBAL_DIR,\n  UPDATE_CHECK_CACHE_PATH,\n  UPDATE_CONFIG_PATH,\n  UPDATE_ERROR_PATH,\n  UPDATE_CHECK_INTERVAL_HOURS,\n  MS_PER_HOUR,\n  NPM_PACKAGE_NAME,\n  UPDATE_SCRIPT_DELAY_SECONDS,\n  RELEASE_CHANNELS,\n  DEFAULT_RELEASE_CHANNEL,\n  type ReleaseChannel,\n} from './constants/update.js';\n"],"mappings":";;;AAAA,OAAO,UAAU;AACjB,OAAO,QAAQ;AAGR,IAAM,wBAAwB;AAG9B,IAAM,kBAAkB,KAAK,KAAK,GAAG,QAAQ,GAAG,OAAO;AAGvD,IAAM,0BAA0B,KAAK,KAAK,iBAAiB,wBAAwB;AAGnF,IAAM,qBAAqB,KAAK,KAAK,iBAAiB,aAAa;AAGnE,IAAM,oBAAoB,KAAK,KAAK,iBAAiB,mBAAmB;AAGxE,IAAM,wBAAwB;AAG9B,IAAM,0BAA0B;AAGhC,IAAM,8BAA8B;AAGpC,IAAM,cAAc;AAGpB,IAAM,mBAAmB;AAGzB,IAAM,oBAAoB;AAG1B,IAAM,0BAA0B;AAGhC,IAAM,kBAAkB;AAAA,EAC7B,EAAE,IAAI,QAAQ,aAAa,kBAAkB,aAAa,OAAO;AAAA,EACjE,EAAE,IAAI,aAAa,aAAa,mBAAmB,aAAa,YAAY;AAAA,EAC5E,EAAE,IAAI,mBAAmB,aAAa,yBAAyB,aAAa,kBAAkB;AAChG;AAIO,IAAM,8BAA8B;AAGpC,IAAM,mBAAmB,CAAC,UAAU,MAAM;AAI1C,IAAM,0BAA0C;;;ACzChD,IAAM,0BAA0B;AAIhC,IAAM,kBAAkB;AAGxB,SAAS,eAAe,MAAsB;AACnD,SAAO,KAAK,KAAK,KAAK,SAAS,eAAe;AAChD;AAIO,IAAM,gBAAgB;AAOtB,IAAM,uBAAuB;AAG7B,IAAM,yBAAyB;AAI/B,IAAM,uBAAuB;AAM7B,IAAM,wBAAwB;AAE9B,IAAM,4BAA4B;AAElC,IAAM,gCAAgC;AAItC,IAAM,uBAAuB;AAI7B,IAAM,2BAA2B;AAEjC,IAAM,4BAA4B;AAGlC,IAAM,gCAAgC;AACtC,IAAM,8BAA8B;AAYpC,IAAM,2BAA2B;AAEjC,IAAM,iCAAiC;AAEvC,IAAM,yBAAyB;AAE/B,IAAM,+BAA+B;AAIrC,IAAM,mBAAmB;AAEzB,IAAM,6BAA6B;AAInC,IAAM,aAAa,KAAK,KAAK,KAAK;AAGlC,SAAS,eAAuB;AACrC,SAAO,KAAK,MAAM,KAAK,IAAI,IAAI,aAAa;AAC9C;AAIO,IAAM,0BAA0B,IAAI;AAIpC,IAAM,6BAA6B,CAAC,KAAK,KAAK,KAAK,KAAK,IAAI;AAI5D,IAAM,+BAA+B;AAKrC,IAAM,0BAA0B;AAEhC,IAAM,uBAAuB;AAe7B,IAAM,yBAAyB;AAE/B,IAAM,2BAA2B;AAEjC,IAAM,yBAAyB;AAE/B,IAAM,sBAAsB;AAG5B,IAAM,2BAA2B;AAEjC,IAAM,qBAAqB;AAE3B,IAAM,gCAAgC;AAYtC,IAAM,gCAAgC;AAItC,IAAM,4BAA4B;AAElC,IAAM,4BAA4B;AAGlC,IAAM,2BAA2B;AAIjC,IAAM,0BAA0B,oBAAI,IAAI,CAAC,cAAc,UAAU,CAAC;AAIlE,IAAM,mBAAmB;AAEzB,IAAM,gBAAgB;AAEtB,IAAM,kBAAkB;AAIxB,IAAM,2BAA2B;AAEjC,IAAM,6BAA6B;AAInC,IAAM,2BAA2B;AAIjC,IAAM,qBAAqB;AAI3B,IAAM,eAAe,CAAC,MAAM,KAAM,GAAK;AA6CvC,IAAM,+BAA+B;AAErC,IAAM,8BAA8B;AAmDpC,IAAM,iBAAiB;AAGvB,IAAM,mBAAmB;AAGzB,IAAM,kBAAkB;AAGxB,IAAM,oBAAoB;AAG1B,IAAM,uBAAuB;AAe7B,IAAM,2BAA2B,CAAC,UAAU,QAAQ,OAAO;AAI3D,IAAM,0BAA0B,IAAI,KAAK;AAEzC,IAAM,2BAA2B,KAAK,KAAK;AAE3C,IAAM,gCAAgC,KAAK,KAAK;AAEhD,IAAM,2BAA2B,KAAK;AAEtC,IAAM,0BAA0B,IAAI,KAAK;AAIzC,IAAM,6BAA6B,KAAK,KAAK;AAY7C,IAAM,2BAA2B;AAUjC,IAAM,iCAAiC;AAOvC,IAAM,wBAAwB;AAI9B,IAAM,qBAAqB;AAE3B,IAAM,qBAAqB;AAE3B,IAAM,yBAAyB;AAE/B,IAAM,yBAAyB;AAE/B,IAAM,sBAAsB;AAE5B,IAAM,wBAAwB;AAM9B,IAAM,8BAA8B;AAIpC,IAAM,4BAA4B;","names":[]}

package/dist/chunk-MYOZLMB2.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/db/schema-ddl.ts","../src/constants/skill-candidate-status.ts","../src/db/migrations.ts","../src/db/schema.ts"],"sourcesContent":["/**\n * DDL constants for all Myco vault tables, FTS5 virtual tables,\n * sync triggers, and secondary indexes.\n *\n * Extracted from schema.ts for readability -- these are pure string\n * constants with no runtime behaviour.\n */\n\n// ---------------------------------------------------------------------------\n// Table DDL statements\n// ---------------------------------------------------------------------------\n\nconst SCHEMA_VERSION_TABLE = `\n  CREATE TABLE IF NOT EXISTS schema_version (\n    version    INTEGER PRIMARY KEY,\n    applied_at INTEGER NOT NULL\n  )`;\n\n// -- Capture Layer ----------------------------------------------------------\n\nconst SESSIONS_TABLE = `\n  CREATE TABLE IF NOT EXISTS sessions (\n    id                     TEXT PRIMARY KEY,\n    agent                  TEXT NOT NULL,\n    \"user\"                 TEXT,\n    project_root           TEXT,\n    branch                 TEXT,\n    started_at             INTEGER NOT NULL,\n    ended_at               INTEGER,\n    status                 TEXT DEFAULT 'active',\n    prompt_count           INTEGER DEFAULT 0,\n    tool_count             INTEGER DEFAULT 0,\n    title                  TEXT,\n    summary                TEXT,\n    transcript_path        TEXT,\n    parent_session_id      TEXT,\n    parent_session_reason  TEXT,\n    processed              INTEGER DEFAULT 0,\n    content_hash           TEXT UNIQUE,\n    created_at             INTEGER NOT NULL,\n    embedded               INTEGER DEFAULT 0,\n    machine_id             TEXT NOT NULL DEFAULT 'local',\n    synced_at              INTEGER\n  )`;\n\nconst PROMPT_BATCHES_TABLE = `\n  CREATE TABLE IF NOT EXISTS prompt_batches (\n    id                INTEGER PRIMARY KEY AUTOINCREMENT,\n    session_id        TEXT NOT NULL REFERENCES sessions(id),\n    prompt_number     INTEGER,\n    user_prompt       TEXT,\n    response_summary  TEXT,\n    classification    TEXT,\n    started_at        INTEGER,\n    ended_at          INTEGER,\n    status            TEXT DEFAULT 'active',\n    activity_count    INTEGER DEFAULT 0,\n    processed         INTEGER DEFAULT 0,\n    content_hash      TEXT UNIQUE,\n    created_at        INTEGER NOT NULL,\n    machine_id        TEXT NOT NULL DEFAULT 'local',\n    synced_at         INTEGER\n  )`;\n\nconst ACTIVITIES_TABLE = `\n  CREATE TABLE IF NOT EXISTS activities (\n    id                   INTEGER PRIMARY KEY AUTOINCREMENT,\n    session_id           TEXT NOT NULL REFERENCES sessions(id),\n    prompt_batch_id      INTEGER REFERENCES prompt_batches(id),\n    tool_name            TEXT NOT NULL,\n    tool_input           TEXT,\n    tool_output_summary  TEXT,\n    file_path            TEXT,\n    files_affected       TEXT,\n    duration_ms          INTEGER,\n    success              INTEGER DEFAULT 1,\n    error_message        TEXT,\n    timestamp            INTEGER NOT NULL,\n    processed            INTEGER DEFAULT 0,\n    content_hash         TEXT UNIQUE,\n    created_at           INTEGER NOT NULL\n  )`;\n\nconst PLANS_TABLE = `\n  CREATE TABLE IF NOT EXISTS plans (\n    id               TEXT PRIMARY KEY,\n    status           TEXT DEFAULT 'active',\n    author           TEXT,\n    title            TEXT,\n    content          TEXT,\n    source_path      TEXT,\n    tags             TEXT,\n    session_id       TEXT REFERENCES sessions(id),\n    prompt_batch_id  INTEGER REFERENCES prompt_batches(id),\n    content_hash     TEXT,\n    processed        INTEGER DEFAULT 0,\n    created_at       INTEGER NOT NULL,\n    updated_at       INTEGER,\n    embedded         INTEGER DEFAULT 0,\n    machine_id       TEXT NOT NULL DEFAULT 'local',\n    synced_at        INTEGER\n  )`;\n\nconst ARTIFACTS_TABLE = `\n  CREATE TABLE IF NOT EXISTS artifacts (\n    id               TEXT PRIMARY KEY,\n    artifact_type    TEXT,\n    source_path      TEXT NOT NULL,\n    title            TEXT NOT NULL,\n    content          TEXT,\n    last_captured_by TEXT,\n    tags             TEXT,\n    created_at       INTEGER NOT NULL,\n    updated_at       INTEGER,\n    embedded         INTEGER DEFAULT 0,\n    machine_id       TEXT NOT NULL DEFAULT 'local',\n    synced_at        INTEGER\n  )`;\n\nconst TEAM_MEMBERS_TABLE = `\n  CREATE TABLE IF NOT EXISTS team_members (\n    id          TEXT PRIMARY KEY,\n    \"user\"      TEXT NOT NULL,\n    role        TEXT,\n    joined      TEXT,\n    tags        TEXT,\n    machine_id  TEXT NOT NULL DEFAULT 'local',\n    synced_at   INTEGER\n  )`;\n\nconst ATTACHMENTS_TABLE = `\n  CREATE TABLE IF NOT EXISTS attachments (\n    id              TEXT PRIMARY KEY,\n    session_id      TEXT REFERENCES sessions(id),\n    prompt_batch_id INTEGER REFERENCES prompt_batches(id),\n    file_path       TEXT NOT NULL,\n    media_type      TEXT,\n    description     TEXT,\n    data            BLOB,\n    content_hash    TEXT,\n    created_at      INTEGER NOT NULL\n  )`;\n\n// -- Intelligence Layer -----------------------------------------------------\n\nconst AGENTS_TABLE = `\n  CREATE TABLE IF NOT EXISTS agents (\n    id                  TEXT PRIMARY KEY,\n    name                TEXT NOT NULL,\n    provider            TEXT,\n    model               TEXT,\n    system_prompt_hash  TEXT,\n    config              TEXT,\n    source              TEXT NOT NULL DEFAULT 'built-in',\n    system_prompt       TEXT,\n    max_turns           INTEGER,\n    timeout_seconds     INTEGER,\n    tool_access         TEXT,\n    enabled             INTEGER NOT NULL DEFAULT 1,\n    created_at          INTEGER NOT NULL,\n    updated_at          INTEGER\n  )`;\n\nconst SPORES_TABLE = `\n  CREATE TABLE IF NOT EXISTS spores (\n    id                TEXT PRIMARY KEY,\n    agent_id          TEXT NOT NULL REFERENCES agents(id),\n    session_id        TEXT REFERENCES sessions(id),\n    prompt_batch_id   INTEGER REFERENCES prompt_batches(id),\n    observation_type  TEXT NOT NULL,\n    status            TEXT DEFAULT 'active',\n    content           TEXT NOT NULL,\n    context           TEXT,\n    importance        INTEGER DEFAULT 5,\n    file_path         TEXT,\n    tags              TEXT,\n    content_hash      TEXT UNIQUE,\n    properties        TEXT,\n    created_at        INTEGER NOT NULL,\n    updated_at        INTEGER,\n    embedded          INTEGER DEFAULT 0,\n    machine_id        TEXT NOT NULL DEFAULT 'local',\n    synced_at         INTEGER\n  )`;\n\nconst ENTITIES_TABLE = `\n  CREATE TABLE IF NOT EXISTS entities (\n    id          TEXT PRIMARY KEY,\n    agent_id    TEXT NOT NULL REFERENCES agents(id),\n    type        TEXT NOT NULL,\n    name        TEXT NOT NULL,\n    properties  TEXT,\n    first_seen  INTEGER NOT NULL,\n    last_seen   INTEGER NOT NULL,\n    status      TEXT DEFAULT 'active',\n    machine_id  TEXT NOT NULL DEFAULT 'local',\n    synced_at   INTEGER,\n    UNIQUE (agent_id, type, name)\n  )`;\n\nconst GRAPH_EDGES_TABLE = `\n  CREATE TABLE IF NOT EXISTS graph_edges (\n    id              TEXT PRIMARY KEY,\n    agent_id        TEXT NOT NULL REFERENCES agents(id),\n    source_id       TEXT NOT NULL,\n    source_type     TEXT NOT NULL,\n    target_id       TEXT NOT NULL,\n    target_type     TEXT NOT NULL,\n    type            TEXT NOT NULL,\n    session_id      TEXT,\n    confidence      REAL DEFAULT 1.0,\n    properties      TEXT,\n    created_at      INTEGER NOT NULL,\n    machine_id      TEXT NOT NULL DEFAULT 'local',\n    synced_at       INTEGER\n  )`;\n\nconst ENTITY_MENTIONS_TABLE = `\n  CREATE TABLE IF NOT EXISTS entity_mentions (\n    entity_id   TEXT NOT NULL REFERENCES entities(id),\n    note_id     TEXT NOT NULL,\n    note_type   TEXT NOT NULL,\n    agent_id    TEXT NOT NULL REFERENCES agents(id),\n    machine_id  TEXT NOT NULL DEFAULT 'local',\n    synced_at   INTEGER,\n    UNIQUE (entity_id, note_id, note_type, agent_id)\n  )`;\n\nconst RESOLUTION_EVENTS_TABLE = `\n  CREATE TABLE IF NOT EXISTS resolution_events (\n    id            TEXT PRIMARY KEY,\n    agent_id      TEXT NOT NULL REFERENCES agents(id),\n    spore_id      TEXT NOT NULL REFERENCES spores(id),\n    action        TEXT NOT NULL,\n    new_spore_id  TEXT,\n    reason        TEXT,\n    session_id    TEXT,\n    created_at    INTEGER NOT NULL,\n    machine_id    TEXT NOT NULL DEFAULT 'local',\n    synced_at     INTEGER\n  )`;\n\nconst DIGEST_EXTRACTS_TABLE = `\n  CREATE TABLE IF NOT EXISTS digest_extracts (\n    id              INTEGER PRIMARY KEY AUTOINCREMENT,\n    agent_id        TEXT NOT NULL REFERENCES agents(id),\n    tier            INTEGER NOT NULL,\n    content         TEXT NOT NULL,\n    substrate_hash  TEXT,\n    generated_at    INTEGER NOT NULL,\n    machine_id      TEXT NOT NULL DEFAULT 'local',\n    synced_at       INTEGER,\n    UNIQUE (agent_id, tier)\n  )`;\n\n// -- Agent State Layer ------------------------------------------------------\n\nconst AGENT_RUNS_TABLE = `\n  CREATE TABLE IF NOT EXISTS agent_runs (\n    id            TEXT PRIMARY KEY,\n    agent_id      TEXT NOT NULL REFERENCES agents(id),\n    task          TEXT,\n    instruction   TEXT,\n    status        TEXT DEFAULT 'pending',\n    started_at    INTEGER,\n    completed_at  INTEGER,\n    tokens_used   INTEGER,\n    cost_usd      REAL,\n    actions_taken TEXT,\n    error         TEXT\n  )`;\n\nconst AGENT_REPORTS_TABLE = `\n  CREATE TABLE IF NOT EXISTS agent_reports (\n    id          INTEGER PRIMARY KEY AUTOINCREMENT,\n    run_id      TEXT NOT NULL REFERENCES agent_runs(id),\n    agent_id    TEXT NOT NULL REFERENCES agents(id),\n    action      TEXT NOT NULL,\n    summary     TEXT NOT NULL,\n    details     TEXT,\n    created_at  INTEGER NOT NULL\n  )`;\n\nconst AGENT_TURNS_TABLE = `\n  CREATE TABLE IF NOT EXISTS agent_turns (\n    id                   INTEGER PRIMARY KEY AUTOINCREMENT,\n    run_id               TEXT NOT NULL REFERENCES agent_runs(id),\n    agent_id             TEXT NOT NULL REFERENCES agents(id),\n    turn_number          INTEGER NOT NULL,\n    tool_name            TEXT NOT NULL,\n    tool_input           TEXT,\n    tool_output_summary  TEXT,\n    started_at           INTEGER,\n    completed_at         INTEGER\n  )`;\n\nconst AGENT_TASKS_TABLE = `\n  CREATE TABLE IF NOT EXISTS agent_tasks (\n    id              TEXT PRIMARY KEY,\n    agent_id        TEXT NOT NULL REFERENCES agents(id),\n    source          TEXT NOT NULL DEFAULT 'built-in',\n    display_name    TEXT,\n    description     TEXT,\n    prompt          TEXT NOT NULL,\n    is_default      INTEGER DEFAULT 0,\n    tool_overrides  TEXT,\n    model           TEXT,\n    config          TEXT,\n    created_at      INTEGER NOT NULL,\n    updated_at      INTEGER\n  )`;\n\nconst AGENT_STATE_TABLE = `\n  CREATE TABLE IF NOT EXISTS agent_state (\n    agent_id    TEXT NOT NULL REFERENCES agents(id),\n    key         TEXT NOT NULL,\n    value       TEXT NOT NULL,\n    updated_at  INTEGER NOT NULL,\n    PRIMARY KEY (agent_id, key)\n  )`;\n\n// -- Sync Layer -------------------------------------------------------------\n\nexport const TEAM_OUTBOX_TABLE = `\n  CREATE TABLE IF NOT EXISTS team_outbox (\n    id          INTEGER PRIMARY KEY AUTOINCREMENT,\n    table_name  TEXT NOT NULL,\n    row_id      TEXT NOT NULL,\n    operation   TEXT NOT NULL DEFAULT 'upsert',\n    payload     TEXT NOT NULL,\n    machine_id  TEXT NOT NULL,\n    created_at  INTEGER NOT NULL,\n    sent_at     INTEGER,\n    retry_count    INTEGER NOT NULL DEFAULT 0,\n    last_attempt_at INTEGER\n  )`;\n\n// -- Logging Layer ----------------------------------------------------------\n\nexport const LOG_ENTRIES_TABLE = `\n  CREATE TABLE IF NOT EXISTS log_entries (\n    id          INTEGER PRIMARY KEY AUTOINCREMENT,\n    timestamp   TEXT    NOT NULL,\n    level       TEXT    NOT NULL,\n    component   TEXT    NOT NULL,\n    kind        TEXT    NOT NULL,\n    message     TEXT    NOT NULL,\n    data        TEXT,\n    session_id  TEXT\n  )`;\n\n// -- Skills Layer -----------------------------------------------------------\n\nexport const SKILL_CANDIDATES_TABLE = `\n  CREATE TABLE IF NOT EXISTS skill_candidates (\n    id              TEXT PRIMARY KEY,\n    agent_id        TEXT NOT NULL REFERENCES agents(id),\n    machine_id      TEXT NOT NULL DEFAULT 'local',\n    topic           TEXT NOT NULL,\n    rationale       TEXT NOT NULL,\n    confidence      REAL NOT NULL DEFAULT 0.0,\n    status          TEXT NOT NULL DEFAULT 'identified',\n    source_ids      TEXT NOT NULL DEFAULT '[]',\n    skill_id        TEXT,\n    supersedes      TEXT,\n    created_at      INTEGER NOT NULL,\n    updated_at      INTEGER NOT NULL,\n    approved_at     INTEGER,\n    synced_at       INTEGER\n  )`;\n\nexport const SKILL_RECORDS_TABLE = `\n  CREATE TABLE IF NOT EXISTS skill_records (\n    id              TEXT PRIMARY KEY,\n    agent_id        TEXT NOT NULL REFERENCES agents(id),\n    machine_id      TEXT NOT NULL DEFAULT 'local',\n    name            TEXT NOT NULL UNIQUE,\n    display_name    TEXT NOT NULL,\n    description     TEXT NOT NULL,\n    status          TEXT NOT NULL DEFAULT 'active',\n    embedded        INTEGER DEFAULT 0,\n    generation      INTEGER NOT NULL DEFAULT 1,\n    candidate_id    TEXT REFERENCES skill_candidates(id),\n    source_ids      TEXT NOT NULL DEFAULT '[]',\n    path            TEXT NOT NULL,\n    usage_count     INTEGER NOT NULL DEFAULT 0,\n    last_used_at    INTEGER,\n    created_at      INTEGER NOT NULL,\n    updated_at      INTEGER NOT NULL,\n    properties      TEXT NOT NULL DEFAULT '{}',\n    synced_at       INTEGER\n  )`;\n\nexport const SKILL_LINEAGE_TABLE = `\n  CREATE TABLE IF NOT EXISTS skill_lineage (\n    id               TEXT PRIMARY KEY,\n    skill_id         TEXT NOT NULL REFERENCES skill_records(id),\n    generation       INTEGER NOT NULL,\n    action           TEXT NOT NULL,\n    rationale        TEXT NOT NULL,\n    source_ids_added TEXT NOT NULL DEFAULT '[]',\n    content_snapshot TEXT NOT NULL,\n    created_at       INTEGER NOT NULL\n  )`;\n\nexport const SKILL_USAGE_TABLE = `\n  CREATE TABLE IF NOT EXISTS skill_usage (\n    id          TEXT PRIMARY KEY,\n    skill_id    TEXT NOT NULL REFERENCES skill_records(id),\n    session_id  TEXT NOT NULL REFERENCES sessions(id),\n    machine_id  TEXT NOT NULL DEFAULT 'local',\n    detected_at INTEGER NOT NULL\n  )`;\n\n// -- Notifications Layer ----------------------------------------------------\n\nexport const NOTIFICATIONS_TABLE = `\n  CREATE TABLE IF NOT EXISTS notifications (\n    id          TEXT PRIMARY KEY,\n    domain      TEXT NOT NULL,\n    type        TEXT NOT NULL,\n    level       TEXT NOT NULL DEFAULT 'info',\n    title       TEXT NOT NULL,\n    message     TEXT,\n    mode        TEXT NOT NULL DEFAULT 'banner',\n    status      TEXT NOT NULL DEFAULT 'unread',\n    link        TEXT,\n    metadata    TEXT,\n    created_at  INTEGER NOT NULL\n  )`;\n\n// -- FTS5 Virtual Tables ----------------------------------------------------\n\nexport const FTS_TABLES = [\n  `CREATE VIRTUAL TABLE IF NOT EXISTS prompt_batches_fts\n     USING fts5(user_prompt, response_summary, content='prompt_batches', content_rowid='id')`,\n\n  `CREATE VIRTUAL TABLE IF NOT EXISTS activities_fts\n     USING fts5(tool_name, tool_input, file_path, content='activities', content_rowid='id')`,\n\n  `CREATE VIRTUAL TABLE IF NOT EXISTS log_entries_fts\n     USING fts5(message, content='log_entries', content_rowid='id')`,\n\n  `CREATE VIRTUAL TABLE IF NOT EXISTS spores_fts\n     USING fts5(content, content='spores', content_rowid='rowid')`,\n\n  `CREATE VIRTUAL TABLE IF NOT EXISTS sessions_fts\n     USING fts5(title, summary, content='sessions', content_rowid='rowid')`,\n\n  // FTS5 sync triggers for log_entries (external-content table)\n  `CREATE TRIGGER IF NOT EXISTS log_entries_ai AFTER INSERT ON log_entries BEGIN\n     INSERT INTO log_entries_fts(rowid, message) VALUES (new.id, new.message);\n   END`,\n\n  `CREATE TRIGGER IF NOT EXISTS log_entries_ad AFTER DELETE ON log_entries BEGIN\n     INSERT INTO log_entries_fts(log_entries_fts, rowid, message) VALUES('delete', old.id, old.message);\n   END`,\n\n  // FTS5 sync triggers for prompt_batches\n  `CREATE TRIGGER IF NOT EXISTS prompt_batches_fts_ai AFTER INSERT ON prompt_batches BEGIN\n     INSERT INTO prompt_batches_fts(rowid, user_prompt, response_summary) VALUES (new.id, new.user_prompt, new.response_summary);\n   END`,\n\n  `CREATE TRIGGER IF NOT EXISTS prompt_batches_fts_au AFTER UPDATE OF user_prompt, response_summary ON prompt_batches BEGIN\n     INSERT INTO prompt_batches_fts(prompt_batches_fts, rowid, user_prompt, response_summary) VALUES('delete', old.id, old.user_prompt, old.response_summary);\n     INSERT INTO prompt_batches_fts(rowid, user_prompt, response_summary) VALUES (new.id, new.user_prompt, new.response_summary);\n   END`,\n\n  `CREATE TRIGGER IF NOT EXISTS prompt_batches_fts_ad AFTER DELETE ON prompt_batches BEGIN\n     INSERT INTO prompt_batches_fts(prompt_batches_fts, rowid, user_prompt, response_summary) VALUES('delete', old.id, old.user_prompt, old.response_summary);\n   END`,\n\n  // FTS5 sync triggers for spores\n  `CREATE TRIGGER IF NOT EXISTS spores_fts_ai AFTER INSERT ON spores BEGIN\n     INSERT INTO spores_fts(rowid, content) VALUES (new.rowid, new.content);\n   END`,\n\n  `CREATE TRIGGER IF NOT EXISTS spores_fts_au AFTER UPDATE OF content ON spores BEGIN\n     INSERT INTO spores_fts(spores_fts, rowid, content) VALUES('delete', old.rowid, old.content);\n     INSERT INTO spores_fts(rowid, content) VALUES (new.rowid, new.content);\n   END`,\n\n  `CREATE TRIGGER IF NOT EXISTS spores_fts_ad AFTER DELETE ON spores BEGIN\n     INSERT INTO spores_fts(spores_fts, rowid, content) VALUES('delete', old.rowid, old.content);\n   END`,\n\n  // FTS5 sync triggers for sessions\n  `CREATE TRIGGER IF NOT EXISTS sessions_fts_ai AFTER INSERT ON sessions BEGIN\n     INSERT INTO sessions_fts(rowid, title, summary) VALUES (new.rowid, new.title, new.summary);\n   END`,\n\n  `CREATE TRIGGER IF NOT EXISTS sessions_fts_au AFTER UPDATE OF title, summary ON sessions BEGIN\n     INSERT INTO sessions_fts(sessions_fts, rowid, title, summary) VALUES('delete', old.rowid, old.title, old.summary);\n     INSERT INTO sessions_fts(rowid, title, summary) VALUES (new.rowid, new.title, new.summary);\n   END`,\n\n  `CREATE TRIGGER IF NOT EXISTS sessions_fts_ad AFTER DELETE ON sessions BEGIN\n     INSERT INTO sessions_fts(sessions_fts, rowid, title, summary) VALUES('delete', old.rowid, old.title, old.summary);\n   END`,\n];\n\n// -- Indexes ----------------------------------------------------------------\n\nexport const SECONDARY_INDEXES = [\n  // Sessions\n  'CREATE INDEX IF NOT EXISTS idx_sessions_status ON sessions (status)',\n  'CREATE INDEX IF NOT EXISTS idx_sessions_processed ON sessions (processed)',\n  'CREATE INDEX IF NOT EXISTS idx_sessions_started_at ON sessions (started_at)',\n  'CREATE INDEX IF NOT EXISTS idx_sessions_agent ON sessions (agent)',\n  'CREATE INDEX IF NOT EXISTS idx_sessions_created_at ON sessions (created_at)',\n\n  // Prompt batches\n  'CREATE INDEX IF NOT EXISTS idx_prompt_batches_session_id ON prompt_batches (session_id)',\n  'CREATE INDEX IF NOT EXISTS idx_prompt_batches_processed ON prompt_batches (processed)',\n  'CREATE INDEX IF NOT EXISTS idx_prompt_batches_status ON prompt_batches (status)',\n\n  // Activities\n  'CREATE INDEX IF NOT EXISTS idx_activities_session_id ON activities (session_id)',\n  'CREATE INDEX IF NOT EXISTS idx_activities_prompt_batch_id ON activities (prompt_batch_id)',\n  'CREATE INDEX IF NOT EXISTS idx_activities_tool_name ON activities (tool_name)',\n  'CREATE INDEX IF NOT EXISTS idx_activities_timestamp ON activities (timestamp)',\n  'CREATE INDEX IF NOT EXISTS idx_activities_processed ON activities (processed)',\n\n  // Spores\n  'CREATE INDEX IF NOT EXISTS idx_spores_agent_id ON spores (agent_id)',\n  'CREATE INDEX IF NOT EXISTS idx_spores_session_id ON spores (session_id)',\n  'CREATE INDEX IF NOT EXISTS idx_spores_status ON spores (status)',\n  'CREATE INDEX IF NOT EXISTS idx_spores_observation_type ON spores (observation_type)',\n  'CREATE INDEX IF NOT EXISTS idx_spores_created_at ON spores (created_at)',\n\n  // Entities\n  'CREATE INDEX IF NOT EXISTS idx_entities_agent_id ON entities (agent_id)',\n  'CREATE INDEX IF NOT EXISTS idx_entities_type ON entities (type)',\n\n  // Graph edges\n  'CREATE INDEX IF NOT EXISTS idx_graph_edges_source ON graph_edges (source_id, source_type)',\n  'CREATE INDEX IF NOT EXISTS idx_graph_edges_target ON graph_edges (target_id, target_type)',\n  'CREATE INDEX IF NOT EXISTS idx_graph_edges_type ON graph_edges (type)',\n  'CREATE INDEX IF NOT EXISTS idx_graph_edges_agent ON graph_edges (agent_id)',\n  'CREATE INDEX IF NOT EXISTS idx_graph_edges_source_type ON graph_edges (source_id, type)',\n\n  // Entity mentions\n  'CREATE INDEX IF NOT EXISTS idx_entity_mentions_entity_id ON entity_mentions (entity_id)',\n  'CREATE INDEX IF NOT EXISTS idx_entity_mentions_agent_id ON entity_mentions (agent_id)',\n\n  // Resolution events\n  'CREATE INDEX IF NOT EXISTS idx_resolution_events_spore_id ON resolution_events (spore_id)',\n  'CREATE INDEX IF NOT EXISTS idx_resolution_events_agent_id ON resolution_events (agent_id)',\n\n  // Digest extracts\n  'CREATE INDEX IF NOT EXISTS idx_digest_extracts_agent_id ON digest_extracts (agent_id)',\n\n  // Agent runs\n  'CREATE INDEX IF NOT EXISTS idx_agent_runs_agent_id ON agent_runs (agent_id)',\n  'CREATE INDEX IF NOT EXISTS idx_agent_runs_status ON agent_runs (status)',\n  'CREATE INDEX IF NOT EXISTS idx_agent_runs_agent_status ON agent_runs (agent_id, status)',\n  'CREATE INDEX IF NOT EXISTS idx_agent_runs_task_completed ON agent_runs (task, status, completed_at)',\n\n  // Agent reports\n  'CREATE INDEX IF NOT EXISTS idx_agent_reports_run_id ON agent_reports (run_id)',\n\n  // Agent turns\n  'CREATE INDEX IF NOT EXISTS idx_agent_turns_run_id ON agent_turns (run_id)',\n\n  // Agent tasks\n  'CREATE INDEX IF NOT EXISTS idx_agent_tasks_agent_id ON agent_tasks (agent_id)',\n\n  // Plans\n  'CREATE INDEX IF NOT EXISTS idx_plans_session_id ON plans (session_id)',\n  'CREATE INDEX IF NOT EXISTS idx_plans_source_path ON plans (source_path)',\n  'CREATE INDEX IF NOT EXISTS idx_plans_content_hash ON plans (content_hash)',\n  // Attachments\n  'CREATE INDEX IF NOT EXISTS idx_attachments_file_path ON attachments (file_path)',\n\n  // Team outbox\n  'CREATE INDEX IF NOT EXISTS idx_team_outbox_pending ON team_outbox (sent_at, created_at)',\n  'CREATE INDEX IF NOT EXISTS idx_team_outbox_table_name ON team_outbox (table_name)',\n  'CREATE INDEX IF NOT EXISTS idx_team_outbox_row_lookup ON team_outbox (table_name, row_id)',\n\n  // Machine ID (synced tables)\n  'CREATE INDEX IF NOT EXISTS idx_sessions_machine_id ON sessions (machine_id)',\n  'CREATE INDEX IF NOT EXISTS idx_spores_machine_id ON spores (machine_id)',\n  'CREATE INDEX IF NOT EXISTS idx_graph_edges_machine_id ON graph_edges (machine_id)',\n\n  // Skill candidates\n  'CREATE INDEX IF NOT EXISTS idx_skill_candidates_agent_id ON skill_candidates (agent_id)',\n  'CREATE INDEX IF NOT EXISTS idx_skill_candidates_status ON skill_candidates (status)',\n  'CREATE INDEX IF NOT EXISTS idx_skill_candidates_machine_id ON skill_candidates (machine_id)',\n  'CREATE INDEX IF NOT EXISTS idx_skill_candidates_agent_status ON skill_candidates (agent_id, status)',\n\n  // Skill records\n  'CREATE INDEX IF NOT EXISTS idx_skill_records_agent_id ON skill_records (agent_id)',\n  'CREATE INDEX IF NOT EXISTS idx_skill_records_status ON skill_records (status)',\n  'CREATE INDEX IF NOT EXISTS idx_skill_records_name ON skill_records (name)',\n  'CREATE INDEX IF NOT EXISTS idx_skill_records_machine_id ON skill_records (machine_id)',\n  'CREATE INDEX IF NOT EXISTS idx_skill_records_agent_status ON skill_records (agent_id, status)',\n\n  // Skill lineage\n  'CREATE INDEX IF NOT EXISTS idx_skill_lineage_skill_id ON skill_lineage (skill_id)',\n\n  // Skill usage\n  'CREATE INDEX IF NOT EXISTS idx_skill_usage_skill_id ON skill_usage (skill_id)',\n  'CREATE INDEX IF NOT EXISTS idx_skill_usage_session_id ON skill_usage (session_id)',\n  'CREATE INDEX IF NOT EXISTS idx_skill_usage_skill_session ON skill_usage (skill_id, session_id)',\n\n  // Log entries\n  'CREATE INDEX IF NOT EXISTS idx_log_entries_timestamp ON log_entries (timestamp)',\n  'CREATE INDEX IF NOT EXISTS idx_log_entries_level ON log_entries (level)',\n  'CREATE INDEX IF NOT EXISTS idx_log_entries_component ON log_entries (component)',\n  'CREATE INDEX IF NOT EXISTS idx_log_entries_kind ON log_entries (kind)',\n  'CREATE INDEX IF NOT EXISTS idx_log_entries_session_id ON log_entries (session_id)',\n\n  // Notifications\n  'CREATE INDEX IF NOT EXISTS idx_notifications_status ON notifications (status)',\n  'CREATE INDEX IF NOT EXISTS idx_notifications_domain ON notifications (domain)',\n  'CREATE INDEX IF NOT EXISTS idx_notifications_created_at ON notifications (created_at)',\n  'CREATE INDEX IF NOT EXISTS idx_notifications_status_created ON notifications (status, created_at)',\n];\n\n// -- Ordered table creation -------------------------------------------------\n\nexport const TABLE_DDLS = [\n  SCHEMA_VERSION_TABLE,\n  // Capture layer (order matters for FK references)\n  SESSIONS_TABLE,\n  PROMPT_BATCHES_TABLE,\n  ACTIVITIES_TABLE,\n  PLANS_TABLE,\n  ARTIFACTS_TABLE,\n  TEAM_MEMBERS_TABLE,\n  ATTACHMENTS_TABLE,\n  // Intelligence layer\n  AGENTS_TABLE,\n  SPORES_TABLE,\n  ENTITIES_TABLE,\n  GRAPH_EDGES_TABLE,\n  ENTITY_MENTIONS_TABLE,\n  RESOLUTION_EVENTS_TABLE,\n  DIGEST_EXTRACTS_TABLE,\n  // Agent state layer\n  AGENT_RUNS_TABLE,\n  AGENT_REPORTS_TABLE,\n  AGENT_TURNS_TABLE,\n  AGENT_TASKS_TABLE,\n  AGENT_STATE_TABLE,\n  // Skills layer\n  SKILL_CANDIDATES_TABLE,\n  SKILL_RECORDS_TABLE,\n  SKILL_LINEAGE_TABLE,\n  SKILL_USAGE_TABLE,\n  // Sync layer\n  TEAM_OUTBOX_TABLE,\n  // Logging layer\n  LOG_ENTRIES_TABLE,\n  // Notifications layer\n  NOTIFICATIONS_TABLE,\n];\n","/**\n * Canonical string values for skill_candidates.status.\n *\n * The skill lifecycle uses four states:\n *   - identified: discovered by skill-survey, awaiting human review\n *   - approved:   human approved; queued for skill-generate\n *   - generated:  vault_finalize_skill promoted the staged skill to live\n *   - dismissed:  retired (human or agent)\n *\n * See docs/superpowers/plans/2026-04-08-skill-lifecycle-audit-and-staging.md\n * for the lifecycle transitions and who is allowed to make each one.\n */\nexport const CANDIDATE_STATUS = {\n  IDENTIFIED: 'identified',\n  APPROVED: 'approved',\n  GENERATED: 'generated',\n  DISMISSED: 'dismissed',\n} as const;\n\nexport type SkillCandidateStatus = (typeof CANDIDATE_STATUS)[keyof typeof CANDIDATE_STATUS];\n\n/**\n * Statuses the agent-facing vault_skill_candidates tool is allowed to set\n * on an update. Human-only transitions (approved) and internal-only\n * transitions (generated, via vault_finalize_skill) are excluded.\n */\nexport const AGENT_SETTABLE_STATUSES: readonly SkillCandidateStatus[] = [\n  CANDIDATE_STATUS.IDENTIFIED,\n  CANDIDATE_STATUS.DISMISSED,\n];\n\n/**\n * Statuses REST callers (UI + MCP myco_skill_candidates) are allowed to\n * set. 'generated' is internal — only vault_finalize_skill sets it, and\n * that path calls updateCandidate directly rather than going through REST.\n */\nexport const REST_SETTABLE_STATUSES: readonly SkillCandidateStatus[] = [\n  CANDIDATE_STATUS.IDENTIFIED,\n  CANDIDATE_STATUS.APPROVED,\n  CANDIDATE_STATUS.DISMISSED,\n];\n\n/**\n * Composite UI filter value that the REST handler translates into a\n * multi-status query (`status IN ('approved', 'generated')`). Kept here\n * so the UI and backend share a single source of truth for the wire\n * encoding.\n */\nexport const PIPELINE_FILTER_VALUE = `${CANDIDATE_STATUS.APPROVED},${CANDIDATE_STATUS.GENERATED}`;\n","/**\n * Schema migrations for the Myco vault database.\n *\n * Each migration is a function that upgrades the database from version N-1 to N.\n * The MIGRATIONS registry provides a declarative list that createSchema() can\n * iterate over instead of hand-coding version checks.\n */\n\nimport type { Database } from 'better-sqlite3';\nimport { epochSeconds, DEFAULT_MACHINE_ID } from '@myco/constants.js';\nimport { CANDIDATE_STATUS } from '@myco/constants/skill-candidate-status.js';\nimport {\n  LOG_ENTRIES_TABLE,\n  TEAM_OUTBOX_TABLE,\n  SKILL_CANDIDATES_TABLE,\n  SKILL_RECORDS_TABLE,\n  SKILL_LINEAGE_TABLE,\n  SKILL_USAGE_TABLE,\n  NOTIFICATIONS_TABLE,\n} from './schema-ddl.js';\n\n// ---------------------------------------------------------------------------\n// Migration interface + registry\n// ---------------------------------------------------------------------------\n\nexport interface Migration {\n  version: number;\n  migrate: (db: Database, machineId: string) => void;\n}\n\nexport const MIGRATIONS: Migration[] = [\n  { version: 2, migrate: (db) => migrateV1ToV2(db) },\n  { version: 3, migrate: (db) => migrateV2ToV3(db) },\n  { version: 4, migrate: migrateV3ToV4 },\n  { version: 5, migrate: (db) => migrateV4ToV5(db) },\n  { version: 6, migrate: (db) => migrateV5ToV6(db) },\n  { version: 7, migrate: migrateV6ToV7 },\n  { version: 8, migrate: (db) => migrateV7ToV8(db) },\n  { version: 9, migrate: (db) => migrateV8ToV9(db) },\n  { version: 10, migrate: (db) => migrateV9ToV10(db) },\n  { version: 11, migrate: (db) => migrateV10ToV11(db) },\n  { version: 12, migrate: (db) => migrateV11ToV12(db) },\n];\n\n// ---------------------------------------------------------------------------\n// Individual migration functions\n// ---------------------------------------------------------------------------\n\n/**\n * Migrate a version-1 database to version-2.\n *\n * Version 2 adds:\n *   - plans.session_id, plans.prompt_batch_id, plans.content_hash\n *   - attachments.data, attachments.content_hash\n *   - indexes: idx_plans_session_id, idx_plans_source_path, idx_plans_content_hash\n *\n * Each ALTER TABLE is wrapped in try/catch so re-running is safe -- SQLite\n * throws \"duplicate column name\" if the column already exists, which we ignore.\n */\nfunction migrateV1ToV2(db: Database): void {\n  db.exec('BEGIN');\n  try {\n    const alterStatements = [\n      'ALTER TABLE plans ADD COLUMN session_id TEXT REFERENCES sessions(id)',\n      'ALTER TABLE plans ADD COLUMN prompt_batch_id INTEGER REFERENCES prompt_batches(id)',\n      'ALTER TABLE plans ADD COLUMN content_hash TEXT',\n      'ALTER TABLE attachments ADD COLUMN data BLOB',\n      'ALTER TABLE attachments ADD COLUMN content_hash TEXT',\n    ];\n\n    for (const stmt of alterStatements) {\n      try {\n        db.exec(stmt);\n      } catch {\n        // Column already exists -- safe to ignore on re-run\n      }\n    }\n\n    // Indexes use IF NOT EXISTS so they are idempotent\n    const newIndexes = [\n      'CREATE INDEX IF NOT EXISTS idx_plans_session_id ON plans (session_id)',\n      'CREATE INDEX IF NOT EXISTS idx_plans_source_path ON plans (source_path)',\n      'CREATE INDEX IF NOT EXISTS idx_plans_content_hash ON plans (content_hash)',\n      'CREATE INDEX IF NOT EXISTS idx_attachments_file_path ON attachments (file_path)',\n    ];\n\n    for (const idx of newIndexes) {\n      db.exec(idx);\n    }\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`\n    ).run(2, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Migrate a version-2 database to version-3.\n *\n * Version 3 adds:\n *   - log_entries table\n *   - log_entries_fts virtual table (FTS5)\n *   - indexes: idx_log_entries_timestamp, _level, _component, _kind, _session_id\n *\n * Uses `CREATE ... IF NOT EXISTS` throughout for idempotency.\n */\nfunction migrateV2ToV3(db: Database): void {\n  db.exec('BEGIN');\n  try {\n    db.exec(LOG_ENTRIES_TABLE);\n\n    db.exec(\n      `CREATE VIRTUAL TABLE IF NOT EXISTS log_entries_fts\n         USING fts5(message, content='log_entries', content_rowid='id')`\n    );\n\n    // FTS5 sync triggers for log_entries\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS log_entries_ai AFTER INSERT ON log_entries BEGIN\n         INSERT INTO log_entries_fts(rowid, message) VALUES (new.id, new.message);\n       END`\n    );\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS log_entries_ad AFTER DELETE ON log_entries BEGIN\n         INSERT INTO log_entries_fts(log_entries_fts, rowid, message) VALUES('delete', old.id, old.message);\n       END`\n    );\n\n    const newIndexes = [\n      'CREATE INDEX IF NOT EXISTS idx_log_entries_timestamp ON log_entries (timestamp)',\n      'CREATE INDEX IF NOT EXISTS idx_log_entries_level ON log_entries (level)',\n      'CREATE INDEX IF NOT EXISTS idx_log_entries_component ON log_entries (component)',\n      'CREATE INDEX IF NOT EXISTS idx_log_entries_kind ON log_entries (kind)',\n      'CREATE INDEX IF NOT EXISTS idx_log_entries_session_id ON log_entries (session_id)',\n    ];\n\n    for (const idx of newIndexes) {\n      db.exec(idx);\n    }\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`\n    ).run(3, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Migrate a version-3 database to version-4.\n *\n * Version 4 adds multi-machine support:\n *   - machine_id TEXT NOT NULL DEFAULT 'local' on all synced tables\n *   - synced_at INTEGER on all synced tables\n *   - team_outbox table + indexes\n *   - machine_id indexes on high-traffic tables\n *\n * Backfills existing rows with the provided machineId.\n */\nfunction migrateV3ToV4(db: Database, machineId: string): void {\n  db.exec('BEGIN');\n  try {\n    // Tables that need machine_id + synced_at columns\n    const syncedTables = [\n      'sessions',\n      'prompt_batches',\n      'spores',\n      'entities',\n      'graph_edges',\n      'entity_mentions',\n      'resolution_events',\n      'plans',\n      'artifacts',\n      'digest_extracts',\n      'team_members',\n    ];\n\n    for (const table of syncedTables) {\n      try {\n        db.exec(`ALTER TABLE ${table} ADD COLUMN machine_id TEXT NOT NULL DEFAULT 'local'`);\n      } catch {\n        // Column already exists -- safe to ignore on re-run\n      }\n      try {\n        db.exec(`ALTER TABLE ${table} ADD COLUMN synced_at INTEGER`);\n      } catch {\n        // Column already exists -- safe to ignore on re-run\n      }\n    }\n\n    // Backfill machine_id on existing rows\n    for (const table of syncedTables) {\n      db.prepare(`UPDATE ${table} SET machine_id = ? WHERE machine_id = 'local'`).run(machineId);\n    }\n\n    // Create team_outbox table\n    db.exec(TEAM_OUTBOX_TABLE);\n\n    // Create new indexes (IF NOT EXISTS for idempotency)\n    const newIndexes = [\n      'CREATE INDEX IF NOT EXISTS idx_team_outbox_pending ON team_outbox (sent_at, created_at)',\n      'CREATE INDEX IF NOT EXISTS idx_team_outbox_table_name ON team_outbox (table_name)',\n      'CREATE INDEX IF NOT EXISTS idx_team_outbox_row_lookup ON team_outbox (table_name, row_id)',\n      'CREATE INDEX IF NOT EXISTS idx_sessions_machine_id ON sessions (machine_id)',\n      'CREATE INDEX IF NOT EXISTS idx_spores_machine_id ON spores (machine_id)',\n      'CREATE INDEX IF NOT EXISTS idx_graph_edges_machine_id ON graph_edges (machine_id)',\n    ];\n\n    for (const idx of newIndexes) {\n      db.exec(idx);\n    }\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`\n    ).run(4, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Migrate a version-4 database to version-5.\n *\n * Version 5 adds the Skills layer:\n *   - skill_candidates table\n *   - skill_records table\n *   - skill_lineage table\n *   - skill_usage table\n *   - indexes for all new tables\n *\n * Uses `CREATE TABLE IF NOT EXISTS` throughout for idempotency.\n */\nfunction migrateV4ToV5(db: Database): void {\n  db.exec('BEGIN');\n  try {\n    db.exec(SKILL_CANDIDATES_TABLE);\n    db.exec(SKILL_RECORDS_TABLE);\n    db.exec(SKILL_LINEAGE_TABLE);\n    db.exec(SKILL_USAGE_TABLE);\n\n    const newIndexes = [\n      'CREATE INDEX IF NOT EXISTS idx_skill_candidates_agent_id ON skill_candidates (agent_id)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_candidates_status ON skill_candidates (status)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_candidates_machine_id ON skill_candidates (machine_id)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_candidates_agent_status ON skill_candidates (agent_id, status)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_records_agent_id ON skill_records (agent_id)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_records_status ON skill_records (status)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_records_name ON skill_records (name)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_records_machine_id ON skill_records (machine_id)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_records_agent_status ON skill_records (agent_id, status)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_lineage_skill_id ON skill_lineage (skill_id)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_usage_skill_id ON skill_usage (skill_id)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_usage_session_id ON skill_usage (session_id)',\n      'CREATE INDEX IF NOT EXISTS idx_skill_usage_skill_session ON skill_usage (skill_id, session_id)',\n      'CREATE INDEX IF NOT EXISTS idx_agent_runs_task_completed ON agent_runs (task, status, completed_at)',\n    ];\n\n    for (const idx of newIndexes) {\n      db.exec(idx);\n    }\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`\n    ).run(5, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Migrate a version-5 database to version-6.\n *\n * Version 6 expands FTS5 coverage:\n *   - prompt_batches_fts gains response_summary column (drop + recreate)\n *   - spores_fts new virtual table (content column, hidden rowid)\n *   - sessions_fts new virtual table (title + summary, hidden rowid)\n *   - sync triggers for all three tables (insert / update / delete)\n *   - backfills FTS from existing data\n *\n * Uses `IF NOT EXISTS` throughout for idempotency where possible.\n * The prompt_batches_fts table must be dropped first since its column\n * definition changed.\n */\nfunction migrateV5ToV6(db: Database): void {\n  db.exec('BEGIN');\n  try {\n    // Drop old prompt_batches_fts (column definition changed)\n    db.exec('DROP TABLE IF EXISTS prompt_batches_fts');\n\n    // Recreate with response_summary added\n    db.exec(\n      `CREATE VIRTUAL TABLE IF NOT EXISTS prompt_batches_fts\n         USING fts5(user_prompt, response_summary, content='prompt_batches', content_rowid='id')`,\n    );\n\n    // New FTS tables\n    db.exec(\n      `CREATE VIRTUAL TABLE IF NOT EXISTS spores_fts\n         USING fts5(content, content='spores', content_rowid='rowid')`,\n    );\n    db.exec(\n      `CREATE VIRTUAL TABLE IF NOT EXISTS sessions_fts\n         USING fts5(title, summary, content='sessions', content_rowid='rowid')`,\n    );\n\n    // Triggers for prompt_batches\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS prompt_batches_fts_ai AFTER INSERT ON prompt_batches BEGIN\n         INSERT INTO prompt_batches_fts(rowid, user_prompt, response_summary) VALUES (new.id, new.user_prompt, new.response_summary);\n       END`,\n    );\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS prompt_batches_fts_au AFTER UPDATE OF user_prompt, response_summary ON prompt_batches BEGIN\n         INSERT INTO prompt_batches_fts(prompt_batches_fts, rowid, user_prompt, response_summary) VALUES('delete', old.id, old.user_prompt, old.response_summary);\n         INSERT INTO prompt_batches_fts(rowid, user_prompt, response_summary) VALUES (new.id, new.user_prompt, new.response_summary);\n       END`,\n    );\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS prompt_batches_fts_ad AFTER DELETE ON prompt_batches BEGIN\n         INSERT INTO prompt_batches_fts(prompt_batches_fts, rowid, user_prompt, response_summary) VALUES('delete', old.id, old.user_prompt, old.response_summary);\n       END`,\n    );\n\n    // Triggers for spores\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS spores_fts_ai AFTER INSERT ON spores BEGIN\n         INSERT INTO spores_fts(rowid, content) VALUES (new.rowid, new.content);\n       END`,\n    );\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS spores_fts_au AFTER UPDATE OF content ON spores BEGIN\n         INSERT INTO spores_fts(spores_fts, rowid, content) VALUES('delete', old.rowid, old.content);\n         INSERT INTO spores_fts(rowid, content) VALUES (new.rowid, new.content);\n       END`,\n    );\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS spores_fts_ad AFTER DELETE ON spores BEGIN\n         INSERT INTO spores_fts(spores_fts, rowid, content) VALUES('delete', old.rowid, old.content);\n       END`,\n    );\n\n    // Triggers for sessions\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS sessions_fts_ai AFTER INSERT ON sessions BEGIN\n         INSERT INTO sessions_fts(rowid, title, summary) VALUES (new.rowid, new.title, new.summary);\n       END`,\n    );\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS sessions_fts_au AFTER UPDATE OF title, summary ON sessions BEGIN\n         INSERT INTO sessions_fts(sessions_fts, rowid, title, summary) VALUES('delete', old.rowid, old.title, old.summary);\n         INSERT INTO sessions_fts(rowid, title, summary) VALUES (new.rowid, new.title, new.summary);\n       END`,\n    );\n    db.exec(\n      `CREATE TRIGGER IF NOT EXISTS sessions_fts_ad AFTER DELETE ON sessions BEGIN\n         INSERT INTO sessions_fts(sessions_fts, rowid, title, summary) VALUES('delete', old.rowid, old.title, old.summary);\n       END`,\n    );\n\n    // Backfill FTS from existing data\n    db.exec(\n      `INSERT INTO prompt_batches_fts(rowid, user_prompt, response_summary)\n         SELECT rowid, user_prompt, response_summary FROM prompt_batches`,\n    );\n    db.exec(\n      `INSERT INTO spores_fts(rowid, content)\n         SELECT rowid, content FROM spores`,\n    );\n    db.exec(\n      `INSERT INTO sessions_fts(rowid, title, summary)\n         SELECT rowid, title, summary FROM sessions`,\n    );\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`,\n    ).run(6, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Migrate v6 -> v7: fix stale 'local' machine_id on ALL synced tables.\n *\n * The agent vault tools historically used DEFAULT_MACHINE_ID ('local')\n * instead of the resolved machine identity. This one-time data migration\n * fixes all affected records and re-queues them for team sync.\n */\nfunction migrateV6ToV7(db: Database, machineId: string): void {\n  if (machineId === 'local' || machineId === DEFAULT_MACHINE_ID) return; // Nothing to fix\n\n  db.exec('BEGIN');\n  try {\n    // entity_mentions excluded -- no `id` column (composite key: entity_id, note_id, note_type)\n    const tables = [\n      'sessions', 'prompt_batches', 'spores', 'entities', 'graph_edges',\n      'resolution_events', 'plans', 'artifacts',\n      'digest_extracts', 'skill_candidates', 'skill_records',\n    ];\n\n    for (const table of tables) {\n      try {\n        // Find rows that need fixing BEFORE updating\n        const staleRows = db.prepare(\n          `SELECT id FROM ${table} WHERE machine_id = 'local'`,\n        ).all() as Array<{ id: string }>;\n\n        if (staleRows.length === 0) continue;\n\n        // Fix machine_id and clear synced_at\n        db.prepare(\n          `UPDATE ${table} SET machine_id = ?, synced_at = NULL WHERE machine_id = 'local'`,\n        ).run(machineId);\n\n        // Clear stale outbox entries for affected rows only\n        for (const row of staleRows) {\n          db.prepare(\n            `DELETE FROM team_outbox WHERE table_name = ? AND row_id = ?`,\n          ).run(table, String(row.id));\n        }\n\n        // Re-enqueue only the fixed rows with full payload\n        const enqueueStmt = db.prepare(\n          `INSERT INTO team_outbox (table_name, row_id, operation, payload, machine_id, created_at)\n           VALUES (?, ?, 'upsert', ?, ?, ?)`,\n        );\n        const now = epochSeconds();\n        for (const stale of staleRows) {\n          const fresh = db.prepare(`SELECT * FROM ${table} WHERE id = ?`).get(stale.id) as Record<string, unknown>;\n          if (fresh) {\n            enqueueStmt.run(table, String(stale.id), JSON.stringify(fresh), machineId, now);\n          }\n        }\n      } catch (tableErr) {\n        // Skip if table doesn't exist; re-throw for other errors (I/O, constraint)\n        const msg = tableErr instanceof Error ? tableErr.message : String(tableErr);\n        if (!msg.includes('no such table')) throw tableErr;\n      }\n    }\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`,\n    ).run(7, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Migrate v7 -> v8: add notifications table.\n *\n * Uses `CREATE TABLE IF NOT EXISTS` for idempotency.\n */\nfunction migrateV7ToV8(db: Database): void {\n  db.exec('BEGIN');\n  try {\n    db.exec(NOTIFICATIONS_TABLE);\n\n    const newIndexes = [\n      'CREATE INDEX IF NOT EXISTS idx_notifications_status ON notifications (status)',\n      'CREATE INDEX IF NOT EXISTS idx_notifications_domain ON notifications (domain)',\n      'CREATE INDEX IF NOT EXISTS idx_notifications_created_at ON notifications (created_at)',\n      'CREATE INDEX IF NOT EXISTS idx_notifications_status_created ON notifications (status, created_at)',\n    ];\n\n    for (const idx of newIndexes) {\n      db.exec(idx);\n    }\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`,\n    ).run(8, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Version 9 adds retry tracking to the team outbox:\n *   - retry_count INTEGER NOT NULL DEFAULT 0\n *   - last_attempt_at INTEGER\n *\n * Records exceeding the max retry count are dead-lettered (excluded from\n * pending queries) so they don't block the sync flush or deep sleep.\n */\nfunction migrateV8ToV9(db: Database): void {\n  db.exec('BEGIN');\n  try {\n    db.exec('ALTER TABLE team_outbox ADD COLUMN retry_count INTEGER NOT NULL DEFAULT 0');\n    db.exec('ALTER TABLE team_outbox ADD COLUMN last_attempt_at INTEGER');\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`,\n    ).run(9, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Version 10 adds an audit trail for skill candidate approvals.\n *\n *   - skill_candidates.approved_at INTEGER (nullable) — timestamp of the\n *     first transition into status='approved'. Auto-managed by\n *     updateCandidate going forward.\n *\n * Backfill: rows currently in status 'approved' or 'generated' get\n * approved_at set to the migration timestamp. This is a one-time,\n * deliberately-imprecise assumption — the true approval time is lost\n * for existing rows, so we record \"as of the migration, these were\n * considered approved\" rather than inventing timestamps.\n *\n * Rows in 'identified' or 'dismissed' state keep approved_at = NULL.\n *\n * Idempotent: the ALTER is wrapped in try/catch so re-runs tolerate the\n * existing column; the backfill uses `WHERE approved_at IS NULL` so it\n * never overwrites a previously-recorded timestamp.\n */\nfunction migrateV9ToV10(db: Database): void {\n  db.exec('BEGIN');\n  try {\n    try {\n      db.exec('ALTER TABLE skill_candidates ADD COLUMN approved_at INTEGER');\n    } catch {\n      // Column already exists -- safe to ignore on re-run\n    }\n\n    const now = epochSeconds();\n    db.prepare(\n      `UPDATE skill_candidates\n         SET approved_at = ?\n       WHERE approved_at IS NULL\n         AND status IN (?, ?)`,\n    ).run(now, CANDIDATE_STATUS.APPROVED, CANDIDATE_STATUS.GENERATED);\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`,\n    ).run(10, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Version 11 adds supersedes tracking to skill candidates.\n *\n *   - skill_candidates.supersedes TEXT (nullable) — JSON array of skill\n *     record names that this candidate would replace. Used by the skill\n *     survey task to create domain-level candidates that explicitly\n *     subsume existing narrow skills.\n *\n * Idempotent: the ALTER is wrapped in try/catch so re-runs tolerate the\n * existing column.\n */\nfunction migrateV10ToV11(db: Database): void {\n  db.exec('BEGIN');\n  try {\n    try {\n      db.exec('ALTER TABLE skill_candidates ADD COLUMN supersedes TEXT');\n    } catch {\n      // Column already exists -- safe to ignore on re-run\n    }\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`,\n    ).run(11, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n\n/**\n * Version 12 adds embedding support for skill records.\n *\n *   - skill_records.embedded INTEGER DEFAULT 0 — flag for the embedding\n *     pipeline to know which rows still need vectors.\n *\n * Idempotent: the ALTER is wrapped in try/catch so re-runs tolerate the\n * existing column.\n */\nfunction migrateV11ToV12(db: Database): void {\n  db.exec('BEGIN');\n  try {\n    try {\n      db.exec('ALTER TABLE skill_records ADD COLUMN embedded INTEGER DEFAULT 0');\n    } catch {\n      // Column already exists\n    }\n\n    db.prepare(\n      `INSERT INTO schema_version (version, applied_at)\n       VALUES (?, ?)\n       ON CONFLICT (version) DO NOTHING`,\n    ).run(12, epochSeconds());\n\n    db.exec('COMMIT');\n  } catch (err) {\n    db.exec('ROLLBACK');\n    throw err;\n  }\n}\n","/**\n * SQLite database schema -- all capture, intelligence, and agent state tables.\n *\n * Uses `CREATE TABLE IF NOT EXISTS` and `CREATE INDEX IF NOT EXISTS` throughout\n * for idempotency. Running `createSchema()` multiple times is always safe.\n *\n * Timestamp convention: all timestamps are INTEGER (Unix epoch seconds).\n * Content hashing: all `content_hash` columns are TEXT with UNIQUE constraint.\n * Embedding dimensions: 1024 (bge-m3 default) -- used by external sqlite-vec store.\n *\n * Vector columns live in a separate sqlite-vec virtual table, not inline.\n * Tables that participate in vector search carry an `embedded INTEGER DEFAULT 0`\n * flag so the embedder knows which rows still need vectors.\n */\n\nimport type { Database } from 'better-sqlite3';\nimport { epochSeconds, DEFAULT_MACHINE_ID } from '@myco/constants.js';\nimport { TABLE_DDLS, FTS_TABLES, SECONDARY_INDEXES } from './schema-ddl.js';\nimport { MIGRATIONS } from './migrations.js';\n\n/** Current schema version -- fresh start for the SQLite era. */\nexport const SCHEMA_VERSION = 12;\n\n// Re-export for backwards compat (other modules import from schema.ts)\nexport { DEFAULT_MACHINE_ID };\n\n/** Embedding vector dimensions (bge-m3 default). */\nexport const EMBEDDING_DIMENSIONS = 1024;\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\nfunction getCurrentVersion(db: Database): number {\n  const row = db.prepare(\n    'SELECT version FROM schema_version ORDER BY version DESC LIMIT 1'\n  ).get() as { version: number } | undefined;\n  return row?.version ?? 0;\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Create all database tables, indexes, and record the schema version.\n *\n * Fully idempotent -- safe to call on every startup. 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package/dist/chunk-OD4AA7PV.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/config/loader.ts","../src/config/appearance-values.ts","../src/config/schema.ts","../src/config/migrations.ts","../src/utils/deep-merge.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport YAML from 'yaml';\nimport { MycoConfigSchema, type MycoConfig, type BackupConfig, type TeamConfig } from './schema.js';\nimport { runMigrations, CURRENT_MIGRATION_VERSION } from './migrations.js';\nimport { deepMerge } from '../utils/deep-merge.js';\n\nexport const CONFIG_FILENAME = 'myco.yaml';\nexport const LOCAL_CONFIG_FILENAME = 'local.yaml';\n\nfunction localConfigPath(vaultDir: string): string {\n  // vaultDir already points at `.myco/` (see resolveVaultDir), so local.yaml\n  // sits alongside myco.yaml in the vault — no extra `.myco/` prefix.\n  return path.join(vaultDir, LOCAL_CONFIG_FILENAME);\n}\n\n/** Config overlay uses replace semantics: arrays in source overwrite arrays in target. */\nexport function deepMergeConfig<T extends Record<string, unknown>>(target: T, source: Partial<T>): T {\n  return deepMerge(target, source, { arrayStrategy: 'replace' });\n}\n\nexport function loadConfig(vaultDir: string): MycoConfig {\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n\n  if (!fs.existsSync(configPath)) {\n    throw new Error(`myco.yaml not found in ${vaultDir}`);\n  }\n\n  const raw = fs.readFileSync(configPath, 'utf-8');\n  const parsed = YAML.parse(raw) as Record<string, unknown>;\n\n  // Detect v1 config and guide migration\n  if (parsed.version === 1 || (parsed.intelligence as Record<string, unknown>)?.backend) {\n    throw new Error(\n      'Myco config uses v1 format. Run /myco:setup-llm to reconfigure for v2.',\n    );\n  }\n\n  // --- v2 → v3 migration ---\n  let v2Migrated = false;\n  if (parsed.version === 2) {\n    // Extract intelligence.embedding to top-level embedding\n    const intel = parsed.intelligence as Record<string, unknown> | undefined;\n    const embeddingConfig = intel?.embedding as Record<string, unknown> | undefined;\n    if (embeddingConfig && !parsed.embedding) {\n      // Map v2 'lm-studio' to v3 'openai-compatible' for embedding provider\n      if (embeddingConfig.provider === 'lm-studio') {\n        embeddingConfig.provider = 'openai-compatible';\n      }\n      parsed.embedding = embeddingConfig;\n    }\n\n    // Keep daemon.port and daemon.log_level, drop grace_period and max_log_size\n    const daemon = parsed.daemon as Record<string, unknown> | undefined;\n    if (daemon) {\n      const { port, log_level } = daemon;\n      parsed.daemon = { port: port ?? null, log_level: log_level ?? 'info' };\n    }\n\n    // Keep capture basics, drop token-related fields; migrate artifact_watch → plan_dirs\n    const capture = parsed.capture as Record<string, unknown> | undefined;\n    if (capture) {\n      const { transcript_paths, artifact_watch, plan_dirs, artifact_extensions, buffer_max_events } = capture;\n      parsed.capture = {\n        transcript_paths,\n        plan_dirs: plan_dirs ?? artifact_watch,\n        artifact_extensions,\n        buffer_max_events,\n      };\n    }\n\n    // Drop removed top-level sections\n    delete parsed.intelligence;\n    delete parsed.context;\n    delete parsed.team;\n    delete parsed.digest;\n    delete parsed.pipeline;\n\n    // Set version to 3\n    parsed.version = 3;\n    v2Migrated = true;\n\n    process.stderr.write('[myco migration] Migrated config from v2 to v3\\n');\n  }\n\n  // Run numbered migrations (for v3+ forward migrations)\n  const migrationsRan = runMigrations(parsed, vaultDir, (msg) => {\n    process.stderr.write(`[myco migration] ${msg}\\n`);\n  });\n\n  // Parse with Zod to fill in defaults for new config sections\n  const config = MycoConfigSchema.parse(parsed);\n\n  // Write back if v2→v3 migration ran, numbered migrations ran, or new defaults were added\n  const needsWrite = v2Migrated\n    || migrationsRan\n    || (parsed.config_version as number ?? 0) < CURRENT_MIGRATION_VERSION\n    || parsed.version !== config.version;\n\n  if (needsWrite) {\n    const fullConfig = JSON.parse(JSON.stringify(config)) as Record<string, unknown>;\n    fs.writeFileSync(configPath, YAML.stringify(fullConfig), 'utf-8');\n  }\n\n  return config;\n}\n\nexport function saveConfig(vaultDir: string, config: MycoConfig): void {\n  // Validate before writing — OAK lesson: validate on write, not just read.\n  // This is the single parse point for all write paths.\n  const validated = MycoConfigSchema.parse(config);\n\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  fs.mkdirSync(vaultDir, { recursive: true });\n  fs.writeFileSync(configPath, YAML.stringify(validated), 'utf-8');\n}\n\nexport function updateConfig(\n  vaultDir: string,\n  fn: (config: MycoConfig) => MycoConfig,\n): MycoConfig {\n  const current = loadConfig(vaultDir);\n  const updated = fn(current);\n  saveConfig(vaultDir, updated);\n  return updated;\n}\n\nexport function updateBackupConfig(\n  vaultDir: string,\n  backup: Partial<BackupConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    backup: { ...config.backup, ...backup },\n  }));\n}\n\n/**\n * Extract the set of enabled symbiont names from config.\n * Returns null when the `symbionts` section is absent (pre-existing installs),\n * signalling callers to fall back to their own heuristic.\n */\nexport function getEnabledSymbiontNames(config: MycoConfig): Set<string> | null {\n  if (!config.symbionts) return null;\n  return new Set(\n    Object.entries(config.symbionts)\n      .filter(([, entry]) => entry.enabled)\n      .map(([name]) => name),\n  );\n}\n\nexport function updateTeamConfig(\n  vaultDir: string,\n  team: Partial<TeamConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    team: { ...config.team, ...team },\n  }));\n}\n\n/** Return raw local overrides, or `{}` if the file is missing, empty, malformed, or not a mapping. */\nexport function loadLocalConfig(vaultDir: string): Partial<MycoConfig> {\n  const filePath = localConfigPath(vaultDir);\n  if (!fs.existsSync(filePath)) return {};\n  const raw = fs.readFileSync(filePath, 'utf-8').trim();\n  if (!raw) return {};\n\n  let parsed: unknown;\n  try {\n    parsed = YAML.parse(raw);\n  } catch (err) {\n    process.stderr.write(`[myco config] Failed to parse ${filePath}; ignoring local overrides. ${(err as Error).message}\\n`);\n    return {};\n  }\n\n  if (!parsed || typeof parsed !== 'object' || Array.isArray(parsed)) {\n    process.stderr.write(`[myco config] ${filePath} must contain a YAML mapping; ignoring local overrides.\\n`);\n    return {};\n  }\n\n  return parsed as Partial<MycoConfig>;\n}\n\n/** Load project config and overlay local overrides on top (leaf-level deep merge). */\nexport function loadMergedConfig(vaultDir: string): MycoConfig {\n  const project = loadConfig(vaultDir);\n  const local = loadLocalConfig(vaultDir);\n  const merged = deepMergeConfig(project as Record<string, unknown>, local as Record<string, unknown>);\n  return MycoConfigSchema.parse(merged);\n}\n\n/**\n * Write local.yaml only when the serialized contents differ from `current`.\n * Skips the write (and mkdirSync) on a no-op to avoid noisy file mtimes.\n */\nfunction writeLocalYamlIfChanged<T>(vaultDir: string, current: T, next: T): T {\n  const existingYaml = YAML.stringify(current);\n  const nextYaml = YAML.stringify(next);\n  if (existingYaml === nextYaml) return next;\n\n  fs.mkdirSync(vaultDir, { recursive: true });\n  fs.writeFileSync(localConfigPath(vaultDir), nextYaml, 'utf-8');\n  return next;\n}\n\n/** Write a partial to <vaultDir>/local.yaml, deep-merging with existing local content. */\nexport function saveLocalConfig(vaultDir: string, patch: Partial<MycoConfig>): Partial<MycoConfig> {\n  const existing = loadLocalConfig(vaultDir);\n  const next = deepMergeConfig(existing as Record<string, unknown>, patch as Record<string, unknown>) as Partial<MycoConfig>;\n  return writeLocalYamlIfChanged(vaultDir, existing, next);\n}\n\n/**\n * Callback-style update for local config. Replace-semantics: the value\n * returned by `fn` is written verbatim (so callers can remove keys by\n * omitting them). Callers that want merge-semantics should spread\n * `...local` inside their callback, or use `saveLocalConfig` directly.\n */\nexport function updateLocalConfig(\n  vaultDir: string,\n  fn: (local: Partial<MycoConfig>) => Partial<MycoConfig>,\n): Partial<MycoConfig> {\n  const current = loadLocalConfig(vaultDir);\n  return writeLocalYamlIfChanged(vaultDir, current, fn(current));\n}\n","/**\n * Appearance enum values shared between the Zod schema (server) and the UI.\n *\n * This file MUST stay free of Node built-ins and other server-only imports\n * so it can be consumed by browser code without pulling in the full schema\n * dependency graph.\n */\n\nexport const APPEARANCE_THEMES = ['sage', 'moss', 'terracotta', 'dusk', 'plum', 'slate'] as const;\nexport const APPEARANCE_MODES = ['light', 'dark', 'system'] as const;\nexport const APPEARANCE_FONTS = ['default', 'geist-mono', 'system', 'sf-mono', 'fira-code', 'jetbrains-mono'] as const;\nexport const APPEARANCE_DENSITIES = ['compact', 'normal', 'comfy'] as const;\n\nexport type AppearanceTheme = typeof APPEARANCE_THEMES[number];\nexport type AppearanceMode = typeof APPEARANCE_MODES[number];\nexport type AppearanceFont = typeof APPEARANCE_FONTS[number];\nexport type AppearanceDensity = typeof APPEARANCE_DENSITIES[number];\n\nexport interface AppearanceValues {\n  theme: AppearanceTheme;\n  mode: AppearanceMode;\n  font: AppearanceFont;\n  density: AppearanceDensity;\n}\n","import { z } from 'zod';\nimport { SCHEDULABLE_POWER_STATES } from '@myco/constants.js';\n\nconst EmbeddingProviderSchema = z.object({\n  provider: z.enum(['ollama', 'openai-compatible', 'openrouter', 'openai']).default('ollama'),\n  model: z.string().default('bge-m3'),\n  base_url: z.string().url().optional(),\n});\n\nconst DaemonSchema = z.object({\n  port: z.number().int().min(1024).max(65535).nullable().default(null),\n  log_level: z.enum(['debug', 'info', 'warn', 'error']).default('info'),\n  log_retention_days: z.number().int().min(1).max(365).default(30),\n  /**\n   * Time without new prompts before an active session is auto-completed (ms).\n   * Intelligence tasks (full-intelligence, skill-survey, etc.) only process\n   * settled sessions, so this threshold directly controls how fresh their\n   * inputs are. Defaults to 1 hour.\n   */\n  stale_session_threshold_ms: z.number().int().min(60_000).default(60 * 60 * 1000),\n});\n\nconst CaptureSchema = z.object({\n  transcript_paths: z.array(z.string()).default([]),\n  plan_dirs: z.array(z.string()).default([]),\n  ignore_plan_dirs_in_git: z.boolean().default(false),\n  artifact_extensions: z.array(z.string()).default(['.md']),\n  buffer_max_events: z.number().int().positive().default(500),\n});\n\n/** Provider config shape used in both task-level and phase-level overrides. */\nconst ProviderOverrideSchema = z.object({\n  type: z.enum(['anthropic', 'ollama', 'lmstudio']),\n  base_url: z.string().optional(),\n  model: z.string().optional(),\n  /** Context window size for local models (Ollama num_ctx, LM Studio context_length). */\n  context_length: z.number().int().positive().optional(),\n});\n\n/** Per-phase overrides within a task — keyed by phase name. */\nconst PhaseOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n});\n\n/** Per-task schedule override — partial, merges with YAML defaults. */\nconst ScheduleOverrideSchema = z.object({\n  enabled: z.boolean().optional(),\n  intervalSeconds: z.number().int().positive().optional(),\n  runIn: z.array(z.enum([...SCHEDULABLE_POWER_STATES])).optional(),\n  preCondition: z.enum(['has-unprocessed-batches', 'has-active-skills', 'has-approved-candidates', 'has-skill-survey-evidence']).optional(),\n}).optional();\n\n/** Per-task config override — stored in myco.yaml under agent.tasks. */\nconst TaskProviderOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n  timeoutSeconds: z.number().int().positive().optional(),\n  phases: z.record(z.string(), PhaseOverrideSchema).optional(),\n  schedule: ScheduleOverrideSchema,\n  /** Task-specific params — keys and types vary per task. */\n  params: z.record(z.string(), z.union([z.string(), z.number(), z.boolean()])).optional(),\n});\n\nconst ContextSchema = z.object({\n  /** Which digest tier to inject at session start. */\n  digest_tier: z.number().int().default(5000),\n  /** Enable semantic spore search on each user prompt. */\n  prompt_search: z.boolean().default(true),\n  /** Max spores to inject per prompt (0-10). */\n  prompt_max_spores: z.number().int().min(0).max(10).default(3),\n});\n\nconst AgentSchema = z.object({\n  /** Number of batches between event-driven summary triggers (0 to disable). */\n  summary_batch_interval: z.number().int().min(0).default(5),\n  /** Global toggle for PowerManager-scheduled agent tasks. */\n  scheduled_tasks_enabled: z.boolean().default(true),\n  /** Global toggle for event-driven agent tasks (title-summary). */\n  event_tasks_enabled: z.boolean().default(true),\n  /** Global default provider — applies to all tasks unless overridden per-task. */\n  provider: ProviderOverrideSchema.optional(),\n  /** Global default model — applies to all tasks unless overridden per-task. */\n  model: z.string().optional(),\n  /** Per-task overrides keyed by task name. */\n  tasks: z.record(z.string(), TaskProviderOverrideSchema).optional(),\n});\n\nconst BackupSchema = z.object({\n  /** Override directory for backup files. Supports ~ for home directory. When unset, defaults to .myco/backups. */\n  dir: z.string().optional(),\n});\n\nconst MaintenanceSchema = z.object({\n  /** Automatically run PRAGMA optimize on a schedule. */\n  auto_optimize: z.boolean().default(true),\n  /** How often to run auto-optimize, in hours (1–720). */\n  auto_optimize_interval_hours: z.number().int().min(1).max(720).default(24),\n});\n\nconst TeamSchema = z.object({\n  /** Whether team sync is enabled. */\n  enabled: z.boolean().default(false),\n  /** Cloudflare Worker URL for team sync. */\n  worker_url: z.string().url().optional(),\n  /** Team identifier for sync grouping. */\n  team_id: z.string().optional(),\n  /** Sync interval in minutes. */\n  interval_minutes: z.number().int().min(1).max(1440).default(15),\n});\n\nconst SkillsSchema = z.object({\n  /** Auto-generate candidates above this confidence score. */\n  confidence_threshold: z.number().min(0).max(1).default(0.7),\n  /** Flag unused skills after this many days. */\n  usage_stale_days: z.number().int().positive().default(30),\n});\n\nconst NotificationsSchema = z.object({\n  /** Master switch — disables all notifications when false. */\n  enabled: z.boolean().default(true),\n  /** Allow browser system notifications (Notification API). */\n  system_notifications: z.boolean().default(false),\n  /** Default display mode for new notification types. */\n  default_mode: z.enum(['banner', 'summary']).default('summary'),\n  /** Per-domain settings. Keys are domain names from the registry. */\n  domains: z.record(z.string(), z.object({\n    enabled: z.boolean().default(true),\n    /** Override display mode for this domain. Omit to use global default_mode. */\n    mode: z.enum(['banner', 'summary']).optional(),\n  })).default({}),\n});\n\nconst SymbiontEntrySchema = z.object({\n  enabled: z.boolean().default(true),\n});\n\nexport {\n  APPEARANCE_THEMES,\n  APPEARANCE_MODES,\n  APPEARANCE_FONTS,\n  APPEARANCE_DENSITIES,\n  type AppearanceValues,\n} from './appearance-values.js';\n\nimport {\n  APPEARANCE_THEMES,\n  APPEARANCE_MODES,\n  APPEARANCE_FONTS,\n  APPEARANCE_DENSITIES,\n} from './appearance-values.js';\n\nexport const AppearanceConfigSchema = z.object({\n  theme: z.enum(APPEARANCE_THEMES).default('sage'),\n  mode: z.enum(APPEARANCE_MODES).default('dark'),\n  font: z.enum(APPEARANCE_FONTS).default('default'),\n  density: z.enum(APPEARANCE_DENSITIES).default('normal'),\n}).default({ theme: 'sage', mode: 'dark', font: 'default', density: 'normal' });\n\nexport type AppearanceConfig = z.infer<typeof AppearanceConfigSchema>;\n\nexport const MycoConfigSchema = z.preprocess(\n  (raw: unknown) => {\n    if (raw && typeof raw === 'object' && 'curation' in raw && !('agent' in raw)) {\n      const { curation, ...rest } = raw as Record<string, unknown>;\n      return { ...rest, agent: curation };\n    }\n    return raw;\n  },\n  z.object({\n    version: z.literal(3),\n    config_version: z.number().int().nonnegative().default(0),\n    embedding: EmbeddingProviderSchema.default(() => EmbeddingProviderSchema.parse({})),\n    daemon: DaemonSchema.default(() => DaemonSchema.parse({})),\n    capture: CaptureSchema.default(() => CaptureSchema.parse({})),\n    agent: AgentSchema.default(() => AgentSchema.parse({})),\n    context: ContextSchema.default(() => ContextSchema.parse({})),\n    backup: BackupSchema.default(() => BackupSchema.parse({})),\n    maintenance: MaintenanceSchema.default(() => MaintenanceSchema.parse({})),\n    team: TeamSchema.default(() => TeamSchema.parse({})),\n    skills: SkillsSchema.default(() => SkillsSchema.parse({})),\n    notifications: NotificationsSchema.default(() => NotificationsSchema.parse({})),\n    appearance: AppearanceConfigSchema,\n    symbionts: z.record(z.string(), SymbiontEntrySchema).optional(),\n  }),\n);\n\nexport type MycoConfig = z.output<typeof MycoConfigSchema>;\nexport type EmbeddingProviderConfig = z.infer<typeof EmbeddingProviderSchema>;\nexport type TaskProviderOverride = z.infer<typeof TaskProviderOverrideSchema>;\nexport type PhaseOverride = z.infer<typeof PhaseOverrideSchema>;\nexport type ScheduleOverride = z.infer<typeof ScheduleOverrideSchema>;\nexport type ContextConfig = z.infer<typeof ContextSchema>;\nexport type BackupConfig = z.infer<typeof BackupSchema>;\nexport type TeamConfig = z.infer<typeof TeamSchema>;\nexport type SkillsConfig = z.infer<typeof SkillsSchema>;\nexport type NotificationsConfig = z.infer<typeof NotificationsSchema>;\nexport type SymbiontEntry = z.infer<typeof SymbiontEntrySchema>;\n","/**\n * Config and vault migrations — run once per version, tracked by config_version.\n *\n * Each migration has a version number, a name, and a function that receives\n * the raw parsed YAML doc and the vault directory. Migrations run in order\n * and are skipped if config_version is already past them.\n *\n * To add a new migration:\n * 1. Add an entry to MIGRATIONS with the next version number\n * 2. Write the migrate function — it receives the mutable doc and vaultDir\n * 3. The framework handles version tracking and writing the config back\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nexport interface Migration {\n  version: number;\n  name: string;\n  migrate: (doc: Record<string, unknown>, vaultDir: string) => void;\n}\n\n/** Regex matching both quoted and unquoted YAML: type: memory, type: \"memory\", type: 'memory' */\nconst MEMORY_TYPE_PATTERN = /type:\\s*[\"']?memory[\"']?/g;\n\nexport const MIGRATIONS: Migration[] = [\n  {\n    version: 1,\n    name: 'rename-memories-to-spores',\n    migrate: (doc, vaultDir) => {\n      // Config: rename context.layers.memories → context.layers.spores\n      const context = doc.context as Record<string, unknown> | undefined;\n      const layers = context?.layers as Record<string, unknown> | undefined;\n      if (layers && 'memories' in layers && !('spores' in layers)) {\n        layers.spores = layers.memories;\n        delete layers.memories;\n      }\n\n      // Vault: rename memories/ directory → spores/\n      const memoriesDir = path.join(vaultDir, 'memories');\n      const sporesDir = path.join(vaultDir, 'spores');\n\n      if (!fs.existsSync(memoriesDir)) return;\n\n      if (fs.existsSync(sporesDir)) {\n        // Both exist (interrupted migration) — merge remaining files\n        const moveRemaining = (srcDir: string, destDir: string): void => {\n          for (const entry of fs.readdirSync(srcDir, { withFileTypes: true })) {\n            const srcPath = path.join(srcDir, entry.name);\n            const destPath = path.join(destDir, entry.name);\n            if (entry.isDirectory()) {\n              if (!fs.existsSync(destPath)) fs.mkdirSync(destPath, { recursive: true });\n              moveRemaining(srcPath, destPath);\n            } else if (!fs.existsSync(destPath)) {\n              fs.renameSync(srcPath, destPath);\n            }\n          }\n        };\n        moveRemaining(memoriesDir, sporesDir);\n        fs.rmSync(memoriesDir, { recursive: true, force: true });\n      } else {\n        fs.renameSync(memoriesDir, sporesDir);\n      }\n\n      // Update frontmatter type: memory → type: spore (handles quoted and unquoted)\n      const walkUpdate = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkUpdate(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          MEMORY_TYPE_PATTERN.lastIndex = 0;\n          if (MEMORY_TYPE_PATTERN.test(content)) {\n            MEMORY_TYPE_PATTERN.lastIndex = 0;\n            fs.writeFileSync(fullPath, content.replace(MEMORY_TYPE_PATTERN, 'type: spore'));\n          }\n        }\n      };\n      walkUpdate(sporesDir);\n\n      // Legacy: update wikilink references in Markdown files (pre-SQLite migration): [[memories/...]] → [[spores/...]]\n      const walkLinks = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkLinks(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          if (content.includes('memories/')) {\n            fs.writeFileSync(fullPath, content.replace(/memories\\//g, 'spores/'));\n          }\n        }\n      };\n      walkLinks(vaultDir);\n    },\n  },\n  {\n    version: 2,\n    name: 'consolidation-boolean-to-object',\n    migrate: (doc) => {\n      const digest = doc.digest as Record<string, unknown> | undefined;\n      if (!digest) return;\n\n      const consolidation = digest.consolidation;\n      if (typeof consolidation === 'boolean') {\n        digest.consolidation = { enabled: consolidation, max_tokens: 2048 };\n      }\n    },\n  },\n  {\n    version: 3,\n    name: 'schedule-to-task-level',\n    migrate(doc: Record<string, unknown>, _vaultDir: string): void {\n      const agent = (doc.agent ?? {}) as Record<string, unknown>;\n      const skills = (doc.skills ?? {}) as Record<string, unknown>;\n      const tasks = ((agent.tasks ?? {}) as Record<string, Record<string, unknown>>);\n\n      /** Default interval for full-intelligence task (5 minutes). */\n      const DEFAULT_INTELLIGENCE_INTERVAL_SECONDS = 300;\n\n      const VALID_SCHEDULE_STATES = ['active', 'idle', 'sleep'] as const;\n\n      // Migrate agent.auto_run + interval_seconds → full-intelligence schedule\n      if ('auto_run' in agent || 'interval_seconds' in agent) {\n        const fiTask = tasks['full-intelligence'] ?? {};\n        fiTask.schedule = {\n          enabled: agent.auto_run ?? true,\n          intervalSeconds: agent.interval_seconds ?? DEFAULT_INTELLIGENCE_INTERVAL_SECONDS,\n        };\n        tasks['full-intelligence'] = fiTask;\n        delete agent.auto_run;\n        delete agent.interval_seconds;\n      }\n\n      // Migrate skills.auto_survey → skill-survey schedule\n      if ('auto_survey' in skills) {\n        const ssTask = tasks['skill-survey'] ?? {};\n        ssTask.schedule = {\n          enabled: skills.auto_survey ?? false,\n        };\n        tasks['skill-survey'] = ssTask;\n        delete skills.auto_survey;\n      }\n\n      // Migrate skills.auto_evolve + evolve_cadence → skill-evolve schedule\n      if ('auto_evolve' in skills || 'evolve_cadence' in skills) {\n        const seTask = tasks['skill-evolve'] ?? {};\n        const schedule: Record<string, unknown> = {\n          enabled: skills.auto_evolve ?? false,\n        };\n        if ('evolve_cadence' in skills) {\n          const cadence = String(skills.evolve_cadence);\n          schedule.runIn = VALID_SCHEDULE_STATES.includes(cadence as typeof VALID_SCHEDULE_STATES[number])\n            ? [cadence]\n            : ['idle']; // fallback to safe default\n        }\n        seTask.schedule = schedule;\n        tasks['skill-evolve'] = seTask;\n        delete skills.auto_evolve;\n        delete skills.evolve_cadence;\n      }\n\n      // Write back tasks if any were created\n      if (Object.keys(tasks).length > 0) {\n        agent.tasks = tasks;\n      }\n      doc.agent = agent;\n      doc.skills = skills;\n    },\n  },\n  {\n    version: 4,\n    name: 'rename-cloud-provider-to-anthropic',\n    migrate(doc: Record<string, unknown>, _vaultDir: string): void {\n      // Rename `provider.type: cloud` -> `provider.type: anthropic` everywhere\n      // it appears in the agent config: global default, per-task, per-phase.\n      const renameProvider = (provider: unknown): void => {\n        if (\n          provider &&\n          typeof provider === 'object' &&\n          (provider as Record<string, unknown>).type === 'cloud'\n        ) {\n          (provider as Record<string, unknown>).type = 'anthropic';\n        }\n      };\n\n      const agent = doc.agent as Record<string, unknown> | undefined;\n      if (!agent) return;\n\n      // Global default provider\n      renameProvider(agent.provider);\n\n      // Per-task overrides\n      const tasks = agent.tasks as Record<string, Record<string, unknown>> | undefined;\n      if (tasks) {\n        for (const taskConfig of Object.values(tasks)) {\n          renameProvider(taskConfig.provider);\n\n          // Per-phase overrides within a task\n          const phases = taskConfig.phases as Record<string, Record<string, unknown>> | undefined;\n          if (phases) {\n            for (const phaseConfig of Object.values(phases)) {\n              renameProvider(phaseConfig.provider);\n            }\n          }\n        }\n      }\n    },\n  },\n  {\n    version: 5,\n    name: 'seed-settings-notification-domain-default',\n    migrate(doc: Record<string, unknown>, _vaultDir: string): void {\n      const notifications = (doc.notifications ??= {}) as Record<string, unknown>;\n      const domains = (notifications.domains ??= {}) as Record<string, unknown>;\n      const settings = (domains.settings ??= {}) as Record<string, unknown>;\n\n      if (!('enabled' in settings)) settings.enabled = true;\n      if (!('mode' in settings)) settings.mode = 'banner';\n    },\n  },\n];\n\n/** Current migration version — the highest version in MIGRATIONS. */\nexport const CURRENT_MIGRATION_VERSION = MIGRATIONS[MIGRATIONS.length - 1]?.version ?? 0;\n\n/**\n * Run all pending migrations on the raw config doc.\n * Returns true if any migrations ran (caller should reindex).\n */\nexport function runMigrations(\n  doc: Record<string, unknown>,\n  vaultDir: string,\n  log?: (message: string) => void,\n): boolean {\n  const currentVersion = (doc.config_version as number) ?? 0;\n  let ran = false;\n\n  for (const migration of MIGRATIONS) {\n    if (migration.version <= currentVersion) continue;\n\n    migration.migrate(doc, vaultDir);\n    doc.config_version = migration.version;\n    ran = true;\n  }\n\n  if (ran) {\n    const from = currentVersion;\n    const to = (doc.config_version as number) ?? 0;\n    log?.(`Migrated config from v${from} to v${to}`);\n  }\n\n  return ran;\n}\n","export interface DeepMergeOptions {\n  /** How to reconcile arrays found at the same key in both target and source. */\n  arrayStrategy: 'replace' | 'union';\n}\n\nexport function isPlainObject(val: unknown): val is Record<string, unknown> {\n  return typeof val === 'object' && val !== null && !Array.isArray(val);\n}\n\n/**\n * Deep-merge source into target at the leaf.\n *\n * - `arrayStrategy: 'replace'` — arrays in source overwrite arrays in target (config overlay semantics).\n * - `arrayStrategy: 'union'` — arrays are concatenated and deduplicated (symbiont settings merge semantics).\n *\n * Non-object, non-array leaves: source overwrites target.\n * `undefined` values in source are skipped (target value preserved).\n */\nexport function deepMerge<T extends Record<string, unknown>>(\n  target: T,\n  source: Partial<T>,\n  options: DeepMergeOptions,\n): T {\n  const result: Record<string, unknown> = { ...target };\n  for (const [key, value] of Object.entries(source)) {\n    if (value === undefined) continue;\n    const existing = result[key];\n    if (Array.isArray(value) && Array.isArray(existing)) {\n      result[key] = options.arrayStrategy === 'union'\n        ? 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