@goondocks/myco 0.20.2 → 0.21.0

package/dist/{session-6IU4AXYP.js → session-2ZEPLWW6.js}

@@ -1,20 +1,22 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   initVaultDb
-} from "./chunk-KESLPBKV.js";
+} from "./chunk-JR54LTPP.js";
 import "./chunk-SAKJMNSR.js";
-import "./chunk-Q36VMZST.js";
-import "./chunk-FMRZ26U5.js";
+import "./chunk-VHNRMM4O.js";
+import "./chunk-X3IGT5RV.js";
 import {
   getSession,
   listSessions
-} from "./chunk-EVDQKYCG.js";
-import "./chunk-OD4AA7PV.js";
+} from "./chunk-RQSJLWP4.js";
+import "./chunk-53RPGOEN.js";
+import "./chunk-OUJSQSKE.js";
+import "./chunk-POEPHBQK.js";
 import "./chunk-MYX5NCRH.js";
-import "./chunk-VVNL26WX.js";
-import "./chunk-XG5RRUYF.js";
+import "./chunk-P66DLD6G.js";
+import "./chunk-BUTL6IFS.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-FLLBJLHM.js";
+import "./chunk-6C6QZ4PM.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
@@ -70,4 +72,4 @@ ${target.summary}`);
 export {
   run
 };
-//# sourceMappingURL=session-6IU4AXYP.js.map
+//# sourceMappingURL=session-2ZEPLWW6.js.map

package/dist/{session-6IU4AXYP.js.map → session-2ZEPLWW6.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/cli/session.ts"],"sourcesContent":["/**\n * CLI: myco session — display session info via direct SQLite reads.\n *\n * Opens the database directly (WAL mode allows concurrent reads).\n * Does NOT require the daemon to be running.\n */\n\nimport { listSessions, getSession } from '@myco/db/queries/sessions.js';\nimport { initVaultDb } from './shared.js';\n\n// ---------------------------------------------------------------------------\n// Command\n// ---------------------------------------------------------------------------\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const idOrLatest = args[0];\n\n  const cleanup = initVaultDb(vaultDir);\n  try {\n    const sessions = listSessions({ limit: 100 });\n    if (sessions.length === 0) {\n      console.log('No sessions found');\n      return;\n    }\n\n    // Resolve target session ID\n    let targetId: string;\n    if (!idOrLatest || idOrLatest === 'latest') {\n      targetId = sessions[0].id;\n    } else {\n      const match = sessions.find((s) => s.id.includes(idOrLatest));\n      if (!match) {\n        console.error(`Session not found: ${idOrLatest}`);\n        console.log('Available:', sessions.map((s) => s.id.slice(0, 12)).join(', '));\n        return;\n      }\n      targetId = match.id;\n    }\n\n    // Fetch full session detail\n    const target = getSession(targetId);\n    if (!target) {\n      console.error(`Failed to fetch session: ${targetId}`);\n      return;\n    }\n\n    console.log(`Session: ${target.id}`);\n    console.log(`Status:  ${target.status}`);\n    if (target.title) console.log(`Title:   ${target.title}`);\n    if (target.branch) console.log(`Branch:  ${target.branch}`);\n    if (target.user) console.log(`User:    ${target.user}`);\n    console.log(`Started: ${new Date(target.started_at * 1000).toISOString()}`);\n    if (target.ended_at) console.log(`Ended:   ${new Date(target.ended_at * 1000).toISOString()}`);\n    if (target.prompt_count) console.log(`Prompts: ${target.prompt_count}`);\n    if (target.tool_count) console.log(`Tools:   ${target.tool_count}`);\n    if (target.summary) console.log(`\\nSummary:\\n${target.summary}`);\n  } catch (err) {\n    console.error('Failed to read vault database:', (err as Error).message);\n    process.exit(1);\n  } finally {\n    cleanup();\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;AAcA,eAAsB,IAAI,MAAgB,UAAiC;AACzE,QAAM,aAAa,KAAK,CAAC;AAEzB,QAAM,UAAU,YAAY,QAAQ;AACpC,MAAI;AACF,UAAM,WAAW,aAAa,EAAE,OAAO,IAAI,CAAC;AAC5C,QAAI,SAAS,WAAW,GAAG;AACzB,cAAQ,IAAI,mBAAmB;AAC/B;AAAA,IACF;AAGA,QAAI;AACJ,QAAI,CAAC,cAAc,eAAe,UAAU;AAC1C,iBAAW,SAAS,CAAC,EAAE;AAAA,IACzB,OAAO;AACL,YAAM,QAAQ,SAAS,KAAK,CAAC,MAAM,EAAE,GAAG,SAAS,UAAU,CAAC;AAC5D,UAAI,CAAC,OAAO;AACV,gBAAQ,MAAM,sBAAsB,UAAU,EAAE;AAChD,gBAAQ,IAAI,cAAc,SAAS,IAAI,CAAC,MAAM,EAAE,GAAG,MAAM,GAAG,EAAE,CAAC,EAAE,KAAK,IAAI,CAAC;AAC3E;AAAA,MACF;AACA,iBAAW,MAAM;AAAA,IACnB;AAGA,UAAM,SAAS,WAAW,QAAQ;AAClC,QAAI,CAAC,QAAQ;AACX,cAAQ,MAAM,4BAA4B,QAAQ,EAAE;AACpD;AAAA,IACF;AAEA,YAAQ,IAAI,YAAY,OAAO,EAAE,EAAE;AACnC,YAAQ,IAAI,YAAY,OAAO,MAAM,EAAE;AACvC,QAAI,OAAO,MAAO,SAAQ,IAAI,YAAY,OAAO,KAAK,EAAE;AACxD,QAAI,OAAO,OAAQ,SAAQ,IAAI,YAAY,OAAO,MAAM,EAAE;AAC1D,QAAI,OAAO,KAAM,SAAQ,IAAI,YAAY,OAAO,IAAI,EAAE;AACtD,YAAQ,IAAI,YAAY,IAAI,KAAK,OAAO,aAAa,GAAI,EAAE,YAAY,CAAC,EAAE;AAC1E,QAAI,OAAO,SAAU,SAAQ,IAAI,YAAY,IAAI,KAAK,OAAO,WAAW,GAAI,EAAE,YAAY,CAAC,EAAE;AAC7F,QAAI,OAAO,aAAc,SAAQ,IAAI,YAAY,OAAO,YAAY,EAAE;AACtE,QAAI,OAAO,WAAY,SAAQ,IAAI,YAAY,OAAO,UAAU,EAAE;AAClE,QAAI,OAAO,QAAS,SAAQ,IAAI;AAAA;AAAA,EAAe,OAAO,OAAO,EAAE;AAAA,EACjE,SAAS,KAAK;AACZ,YAAQ,MAAM,kCAAmC,IAAc,OAAO;AACtE,YAAQ,KAAK,CAAC;AAAA,EAChB,UAAE;AACA,YAAQ;AAAA,EACV;AACF;","names":[]}
+{"version":3,"sources":["../src/cli/session.ts"],"sourcesContent":["/**\n * CLI: myco session — display session info via direct SQLite reads.\n *\n * Opens the database directly (WAL mode allows concurrent reads).\n * Does NOT require the daemon to be running.\n */\n\nimport { listSessions, getSession } from '@myco/db/queries/sessions.js';\nimport { initVaultDb } from './shared.js';\n\n// ---------------------------------------------------------------------------\n// Command\n// ---------------------------------------------------------------------------\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const idOrLatest = args[0];\n\n  const cleanup = initVaultDb(vaultDir);\n  try {\n    const sessions = listSessions({ limit: 100 });\n    if (sessions.length === 0) {\n      console.log('No sessions found');\n      return;\n    }\n\n    // Resolve target session ID\n    let targetId: string;\n    if (!idOrLatest || idOrLatest === 'latest') {\n      targetId = sessions[0].id;\n    } else {\n      const match = sessions.find((s) => s.id.includes(idOrLatest));\n      if (!match) {\n        console.error(`Session not found: ${idOrLatest}`);\n        console.log('Available:', sessions.map((s) => s.id.slice(0, 12)).join(', '));\n        return;\n      }\n      targetId = match.id;\n    }\n\n    // Fetch full session detail\n    const target = getSession(targetId);\n    if (!target) {\n      console.error(`Failed to fetch session: ${targetId}`);\n      return;\n    }\n\n    console.log(`Session: ${target.id}`);\n    console.log(`Status:  ${target.status}`);\n    if (target.title) console.log(`Title:   ${target.title}`);\n    if (target.branch) console.log(`Branch:  ${target.branch}`);\n    if (target.user) console.log(`User:    ${target.user}`);\n    console.log(`Started: ${new Date(target.started_at * 1000).toISOString()}`);\n    if (target.ended_at) console.log(`Ended:   ${new Date(target.ended_at * 1000).toISOString()}`);\n    if (target.prompt_count) console.log(`Prompts: ${target.prompt_count}`);\n    if (target.tool_count) console.log(`Tools:   ${target.tool_count}`);\n    if (target.summary) console.log(`\\nSummary:\\n${target.summary}`);\n  } catch (err) {\n    console.error('Failed to read vault database:', (err as Error).message);\n    process.exit(1);\n  } finally {\n    cleanup();\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;AAcA,eAAsB,IAAI,MAAgB,UAAiC;AACzE,QAAM,aAAa,KAAK,CAAC;AAEzB,QAAM,UAAU,YAAY,QAAQ;AACpC,MAAI;AACF,UAAM,WAAW,aAAa,EAAE,OAAO,IAAI,CAAC;AAC5C,QAAI,SAAS,WAAW,GAAG;AACzB,cAAQ,IAAI,mBAAmB;AAC/B;AAAA,IACF;AAGA,QAAI;AACJ,QAAI,CAAC,cAAc,eAAe,UAAU;AAC1C,iBAAW,SAAS,CAAC,EAAE;AAAA,IACzB,OAAO;AACL,YAAM,QAAQ,SAAS,KAAK,CAAC,MAAM,EAAE,GAAG,SAAS,UAAU,CAAC;AAC5D,UAAI,CAAC,OAAO;AACV,gBAAQ,MAAM,sBAAsB,UAAU,EAAE;AAChD,gBAAQ,IAAI,cAAc,SAAS,IAAI,CAAC,MAAM,EAAE,GAAG,MAAM,GAAG,EAAE,CAAC,EAAE,KAAK,IAAI,CAAC;AAC3E;AAAA,MACF;AACA,iBAAW,MAAM;AAAA,IACnB;AAGA,UAAM,SAAS,WAAW,QAAQ;AAClC,QAAI,CAAC,QAAQ;AACX,cAAQ,MAAM,4BAA4B,QAAQ,EAAE;AACpD;AAAA,IACF;AAEA,YAAQ,IAAI,YAAY,OAAO,EAAE,EAAE;AACnC,YAAQ,IAAI,YAAY,OAAO,MAAM,EAAE;AACvC,QAAI,OAAO,MAAO,SAAQ,IAAI,YAAY,OAAO,KAAK,EAAE;AACxD,QAAI,OAAO,OAAQ,SAAQ,IAAI,YAAY,OAAO,MAAM,EAAE;AAC1D,QAAI,OAAO,KAAM,SAAQ,IAAI,YAAY,OAAO,IAAI,EAAE;AACtD,YAAQ,IAAI,YAAY,IAAI,KAAK,OAAO,aAAa,GAAI,EAAE,YAAY,CAAC,EAAE;AAC1E,QAAI,OAAO,SAAU,SAAQ,IAAI,YAAY,IAAI,KAAK,OAAO,WAAW,GAAI,EAAE,YAAY,CAAC,EAAE;AAC7F,QAAI,OAAO,aAAc,SAAQ,IAAI,YAAY,OAAO,YAAY,EAAE;AACtE,QAAI,OAAO,WAAY,SAAQ,IAAI,YAAY,OAAO,UAAU,EAAE;AAClE,QAAI,OAAO,QAAS,SAAQ,IAAI;AAAA;AAAA,EAAe,OAAO,OAAO,EAAE;AAAA,EACjE,SAAS,KAAK;AACZ,YAAQ,MAAM,kCAAmC,IAAc,OAAO;AACtE,YAAQ,KAAK,CAAC;AAAA,EAChB,UAAE;AACA,YAAQ;AAAA,EACV;AACF;","names":[]}

package/dist/{session-end-FT27DWYZ.js → session-end-LWJYQAXX.js}

@@ -2,18 +2,18 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   normalizeHookInput,
   readStdin
-} from "./chunk-DCSGJ7W4.js";
+} from "./chunk-5ZG4RMUH.js";
 import "./chunk-ZXZPJJN3.js";
 import {
   resolveVaultDir
 } from "./chunk-CUDIZJY7.js";
 import {
   DaemonClient
-} from "./chunk-VVNL26WX.js";
-import "./chunk-XG5RRUYF.js";
+} from "./chunk-P66DLD6G.js";
+import "./chunk-BUTL6IFS.js";
 import "./chunk-NGROSFOH.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-FLLBJLHM.js";
+import "./chunk-6C6QZ4PM.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
@@ -41,4 +41,4 @@ async function main() {
 export {
   main
 };
-//# sourceMappingURL=session-end-FT27DWYZ.js.map
+//# sourceMappingURL=session-end-LWJYQAXX.js.map

package/dist/session-start-WTA6GCOQ.js

@@ -0,0 +1,134 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  composeSessionStartContext,
+  shouldInjectSessionStartDigest
+} from "./chunk-DJ3IHNYO.js";
+import {
+  getCortexInstructions,
+  shouldInjectCortex
+} from "./chunk-F3OEQYLS.js";
+import "./chunk-RQSJLWP4.js";
+import {
+  evaluateSessionCaptureRules,
+  readTranscriptMeta
+} from "./chunk-XL75KZGI.js";
+import "./chunk-CESKJD44.js";
+import {
+  createSchema
+} from "./chunk-RL5R4CQU.js";
+import {
+  loadMergedConfig
+} from "./chunk-53RPGOEN.js";
+import "./chunk-OUJSQSKE.js";
+import "./chunk-POEPHBQK.js";
+import {
+  initDatabase,
+  vaultDbPath
+} from "./chunk-MYX5NCRH.js";
+import {
+  normalizeHookInput,
+  readStdin
+} from "./chunk-5ZG4RMUH.js";
+import "./chunk-ZXZPJJN3.js";
+import {
+  resolveVaultDir
+} from "./chunk-CUDIZJY7.js";
+import {
+  DaemonClient
+} from "./chunk-P66DLD6G.js";
+import "./chunk-BUTL6IFS.js";
+import {
+  loadManifests
+} from "./chunk-NGROSFOH.js";
+import "./chunk-LPUQPDC2.js";
+import {
+  DEFAULT_AGENT_ID,
+  estimateTokens
+} from "./chunk-6C6QZ4PM.js";
+import "./chunk-UUHLLQXO.js";
+import "./chunk-6LQIMRTC.js";
+import "./chunk-ODXLRR4U.js";
+import "./chunk-U6PF3YII.js";
+import "./chunk-PZUWP5VK.js";
+
+// src/context/injector.ts
+async function buildInjectedContext(config, _context) {
+  const includeBrief = shouldInjectCortex(config.context);
+  const includeDigest = shouldInjectSessionStartDigest(config.context);
+  if (!includeBrief && !includeDigest) {
+    return emptyContext();
+  }
+  const brief = includeBrief ? getCortexInstructions(DEFAULT_AGENT_ID)?.content ?? "" : "";
+  const { parts } = composeSessionStartContext(config, brief);
+  const text = parts.map((p) => p.text).join("\n\n");
+  return {
+    text,
+    tokenEstimate: estimateTokens(text)
+  };
+}
+function emptyContext() {
+  return {
+    text: "",
+    tokenEstimate: 0
+  };
+}
+
+// src/hooks/session-start.ts
+import { execFileSync } from "child_process";
+import fs from "fs";
+import path from "path";
+async function main() {
+  const VAULT_DIR = resolveVaultDir();
+  if (!fs.existsSync(path.join(VAULT_DIR, "myco.yaml"))) return;
+  try {
+    const rawInput = JSON.parse(await readStdin());
+    const { sessionId, agent, transcriptPath } = normalizeHookInput(rawInput);
+    const transcriptMeta = transcriptPath ? readTranscriptMeta(transcriptPath) : void 0;
+    const decision = evaluateSessionCaptureRules(loadManifests(), agent, {
+      transcriptPath,
+      transcriptMeta: transcriptMeta ?? void 0
+    });
+    if (decision.action === "drop") {
+      process.stderr.write(`[myco] session-start: dropped (${decision.reason ?? "rule"})
+`);
+      return;
+    }
+    const config = loadMergedConfig(VAULT_DIR);
+    const client = new DaemonClient(VAULT_DIR);
+    const healthy = await client.ensureRunning();
+    let branch;
+    try {
+      branch = execFileSync("git", ["rev-parse", "--abbrev-ref", "HEAD"], { encoding: "utf-8" }).trim();
+    } catch {
+    }
+    if (healthy) {
+      const [, contextResult] = await Promise.all([
+        client.post("/sessions/register", {
+          session_id: sessionId,
+          agent,
+          branch,
+          started_at: (/* @__PURE__ */ new Date()).toISOString()
+        }),
+        client.post("/context", { session_id: sessionId, branch })
+      ]);
+      if (contextResult.ok && contextResult.data?.text) {
+        if (contextResult.data.source === "cortex") {
+          process.stderr.write("[myco] Injecting Myco Cortex instructions\n");
+        }
+        process.stdout.write(contextResult.data.text);
+        return;
+      }
+    }
+    const db = initDatabase(vaultDbPath(VAULT_DIR));
+    createSchema(db);
+    const injected = await buildInjectedContext(config, { branch });
+    if (injected.text) process.stdout.write(injected.text);
+  } catch (error) {
+    process.stderr.write(`[myco] session-start error: ${error.message}
+`);
+  }
+}
+export {
+  main
+};
+//# sourceMappingURL=session-start-WTA6GCOQ.js.map

package/dist/session-start-WTA6GCOQ.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/context/injector.ts","../src/hooks/session-start.ts"],"sourcesContent":["import type { MycoConfig } from '@myco/config/schema.js';\nimport { estimateTokens, DEFAULT_AGENT_ID } from '@myco/constants.js';\nimport { getCortexInstructions } from '@myco/db/queries/cortex-instructions.js';\nimport { shouldInjectCortex } from './cortex-brief.js';\nimport { shouldInjectSessionStartDigest } from './session-start-digest.js';\nimport { composeSessionStartContext } from './session-start-context.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\ninterface InjectionContext {\n  branch?: string;\n}\n\ninterface InjectedContext {\n  text: string;\n  tokenEstimate: number;\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Build the degraded-path session-start context.\n *\n * The normal session-start path goes through the daemon. If the daemon is\n * unavailable, read the last stored Cortex instructions locally so degraded\n * mode matches daemon semantics instead of regenerating ad hoc text.\n */\nexport async function buildInjectedContext(\n  config: MycoConfig,\n  _context: InjectionContext,\n): Promise<InjectedContext> {\n  const includeBrief = shouldInjectCortex(config.context);\n  const includeDigest = shouldInjectSessionStartDigest(config.context);\n  if (!includeBrief && !includeDigest) {\n    return emptyContext();\n  }\n\n  const brief = includeBrief ? getCortexInstructions(DEFAULT_AGENT_ID)?.content ?? '' : '';\n  const { parts } = composeSessionStartContext(config, brief);\n  const text = parts.map((p) => p.text).join('\\n\\n');\n\n  return {\n    text,\n    tokenEstimate: estimateTokens(text),\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\nfunction emptyContext(): InjectedContext {\n  return {\n    text: '',\n    tokenEstimate: 0,\n  };\n}\n","import { DaemonClient } from './client.js';\nimport { readStdin } from './read-stdin.js';\nimport { normalizeHookInput } from './normalize.js';\nimport { evaluateSessionCaptureRules } from './capture-rules.js';\nimport { readTranscriptMeta } from './transcript-meta.js';\nimport { loadManifests } from '../symbionts/detect.js';\nimport { loadMergedConfig } from '../config/loader.js';\nimport { buildInjectedContext } from '../context/injector.js';\nimport { initDatabase, vaultDbPath } from '../db/client.js';\nimport { createSchema } from '../db/schema.js';\nimport { resolveVaultDir } from '../vault/resolve.js';\nimport { execFileSync } from 'node:child_process';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nexport async function main() {\n  const VAULT_DIR = resolveVaultDir();\n  if (!fs.existsSync(path.join(VAULT_DIR, 'myco.yaml'))) return;\n\n  try {\n    const rawInput = JSON.parse(await readStdin());\n    const { sessionId, agent, transcriptPath } = normalizeHookInput(rawInput);\n\n    // Apply session_start capture rules BEFORE registering the session.\n    // For Codex ephemeral sub-invocations (title generation, etc.) this\n    // structural drop prevents the phantom row from ever being created,\n    // rather than creating it and cascade-deleting at user_prompt time.\n    // Read the transcript's session_meta for rules that inspect it\n    // (e.g., detecting sub-agent thread spawns via source.subagent).\n    const transcriptMeta = transcriptPath ? readTranscriptMeta(transcriptPath) : undefined;\n    const decision = evaluateSessionCaptureRules(loadManifests(), agent, {\n      transcriptPath,\n      transcriptMeta: transcriptMeta ?? undefined,\n    });\n    if (decision.action === 'drop') {\n      process.stderr.write(`[myco] session-start: dropped (${decision.reason ?? 'rule'})\\n`);\n      return;\n    }\n\n    const config = loadMergedConfig(VAULT_DIR);\n    const client = new DaemonClient(VAULT_DIR);\n    const healthy = await client.ensureRunning();\n\n    let branch: string | undefined;\n    try {\n      branch = execFileSync('git', ['rev-parse', '--abbrev-ref', 'HEAD'], { encoding: 'utf-8' }).trim();\n    } catch { /* not a git repo */ }\n\n    if (healthy) {\n      const [, contextResult] = await Promise.all([\n        client.post('/sessions/register', {\n          session_id: sessionId,\n          agent,\n          branch,\n          started_at: new Date().toISOString(),\n        }),\n        client.post('/context', { session_id: sessionId, branch }),\n      ]);\n\n      if (contextResult.ok && contextResult.data?.text) {\n        if (contextResult.data.source === 'cortex') {\n          process.stderr.write('[myco] Injecting Myco Cortex instructions\\n');\n        }\n        process.stdout.write(contextResult.data.text);\n        return;\n      }\n    }\n\n    // Degraded: local SQLite context only\n    const db = initDatabase(vaultDbPath(VAULT_DIR));\n    createSchema(db);\n    const injected = await buildInjectedContext(config, { branch });\n    if (injected.text) process.stdout.write(injected.text);\n  } catch (error) {\n    process.stderr.write(`[myco] session-start error: ${(error as Error).message}\\n`);\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AA+BA,eAAsB,qBACpB,QACA,UAC0B;AAC1B,QAAM,eAAe,mBAAmB,OAAO,OAAO;AACtD,QAAM,gBAAgB,+BAA+B,OAAO,OAAO;AACnE,MAAI,CAAC,gBAAgB,CAAC,eAAe;AACnC,WAAO,aAAa;AAAA,EACtB;AAEA,QAAM,QAAQ,eAAe,sBAAsB,gBAAgB,GAAG,WAAW,KAAK;AACtF,QAAM,EAAE,MAAM,IAAI,2BAA2B,QAAQ,KAAK;AAC1D,QAAM,OAAO,MAAM,IAAI,CAAC,MAAM,EAAE,IAAI,EAAE,KAAK,MAAM;AAEjD,SAAO;AAAA,IACL;AAAA,IACA,eAAe,eAAe,IAAI;AAAA,EACpC;AACF;AAMA,SAAS,eAAgC;AACvC,SAAO;AAAA,IACL,MAAM;AAAA,IACN,eAAe;AAAA,EACjB;AACF;;;ACjDA,SAAS,oBAAoB;AAC7B,OAAO,QAAQ;AACf,OAAO,UAAU;AAEjB,eAAsB,OAAO;AAC3B,QAAM,YAAY,gBAAgB;AAClC,MAAI,CAAC,GAAG,WAAW,KAAK,KAAK,WAAW,WAAW,CAAC,EAAG;AAEvD,MAAI;AACF,UAAM,WAAW,KAAK,MAAM,MAAM,UAAU,CAAC;AAC7C,UAAM,EAAE,WAAW,OAAO,eAAe,IAAI,mBAAmB,QAAQ;AAQxE,UAAM,iBAAiB,iBAAiB,mBAAmB,cAAc,IAAI;AAC7E,UAAM,WAAW,4BAA4B,cAAc,GAAG,OAAO;AAAA,MACnE;AAAA,MACA,gBAAgB,kBAAkB;AAAA,IACpC,CAAC;AACD,QAAI,SAAS,WAAW,QAAQ;AAC9B,cAAQ,OAAO,MAAM,kCAAkC,SAAS,UAAU,MAAM;AAAA,CAAK;AACrF;AAAA,IACF;AAEA,UAAM,SAAS,iBAAiB,SAAS;AACzC,UAAM,SAAS,IAAI,aAAa,SAAS;AACzC,UAAM,UAAU,MAAM,OAAO,cAAc;AAE3C,QAAI;AACJ,QAAI;AACF,eAAS,aAAa,OAAO,CAAC,aAAa,gBAAgB,MAAM,GAAG,EAAE,UAAU,QAAQ,CAAC,EAAE,KAAK;AAAA,IAClG,QAAQ;AAAA,IAAuB;AAE/B,QAAI,SAAS;AACX,YAAM,CAAC,EAAE,aAAa,IAAI,MAAM,QAAQ,IAAI;AAAA,QAC1C,OAAO,KAAK,sBAAsB;AAAA,UAChC,YAAY;AAAA,UACZ;AAAA,UACA;AAAA,UACA,aAAY,oBAAI,KAAK,GAAE,YAAY;AAAA,QACrC,CAAC;AAAA,QACD,OAAO,KAAK,YAAY,EAAE,YAAY,WAAW,OAAO,CAAC;AAAA,MAC3D,CAAC;AAED,UAAI,cAAc,MAAM,cAAc,MAAM,MAAM;AAChD,YAAI,cAAc,KAAK,WAAW,UAAU;AAC1C,kBAAQ,OAAO,MAAM,6CAA6C;AAAA,QACpE;AACA,gBAAQ,OAAO,MAAM,cAAc,KAAK,IAAI;AAC5C;AAAA,MACF;AAAA,IACF;AAGA,UAAM,KAAK,aAAa,YAAY,SAAS,CAAC;AAC9C,iBAAa,EAAE;AACf,UAAM,WAAW,MAAM,qBAAqB,QAAQ,EAAE,OAAO,CAAC;AAC9D,QAAI,SAAS,KAAM,SAAQ,OAAO,MAAM,SAAS,IAAI;AAAA,EACvD,SAAS,OAAO;AACd,YAAQ,OAAO,MAAM,+BAAgC,MAAgB,OAAO;AAAA,CAAI;AAAA,EAClF;AACF;","names":[]}

package/dist/{setup-llm-77MP4I2G.js → setup-llm-E7UU5IO7.js}

@@ -1,23 +1,25 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   withEmbedding
-} from "./chunk-US4LNCAT.js";
-import "./chunk-KESLPBKV.js";
+} from "./chunk-IPPMYQ2Y.js";
+import "./chunk-JR54LTPP.js";
 import {
   parseStringFlag
 } from "./chunk-SAKJMNSR.js";
-import "./chunk-Q36VMZST.js";
-import "./chunk-FMRZ26U5.js";
+import "./chunk-VHNRMM4O.js";
+import "./chunk-X3IGT5RV.js";
 import {
   loadConfig,
   updateConfig
-} from "./chunk-OD4AA7PV.js";
+} from "./chunk-53RPGOEN.js";
+import "./chunk-OUJSQSKE.js";
+import "./chunk-POEPHBQK.js";
 import "./chunk-MYX5NCRH.js";
 import "./chunk-ZXZPJJN3.js";
-import "./chunk-VVNL26WX.js";
-import "./chunk-XG5RRUYF.js";
+import "./chunk-P66DLD6G.js";
+import "./chunk-BUTL6IFS.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-FLLBJLHM.js";
+import "./chunk-6C6QZ4PM.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
@@ -80,4 +82,4 @@ async function run(args, vaultDir) {
 export {
   run
 };
-//# sourceMappingURL=setup-llm-77MP4I2G.js.map
+//# sourceMappingURL=setup-llm-E7UU5IO7.js.map

package/dist/{setup-llm-77MP4I2G.js.map → setup-llm-E7UU5IO7.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/cli/setup-llm.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport { loadConfig, updateConfig } from '../config/loader.js';\nimport { withEmbedding } from '../config/updates.js';\nimport { parseStringFlag } from './shared.js';\nimport type { EmbeddingProviderConfig } from '../config/schema.js';\n\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\nconst USAGE = `Usage: myco setup-llm [options]\n\nConfigure embedding provider settings.\n\nIn v3, LLM configuration is managed by the Myco agent (Claude Agent SDK).\nOnly embedding settings are user-configurable.\n\nOptions:\n  --embedding-provider <name>   Embedding provider (ollama, openai-compatible)\n  --embedding-model <name>      Embedding model name\n  --embedding-url <url>         Embedding provider base URL\n  --show                        Show current settings and exit\n`;\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  // Show current settings\n  if (args.includes('--show')) {\n    const config = loadConfig(vaultDir);\n    console.log(JSON.stringify(config.embedding, null, 2));\n    return;\n  }\n\n  // No flags = show usage\n  if (args.length === 0) {\n    console.log(USAGE);\n    return;\n  }\n\n  // Warn about removed LLM flags\n  const llmProvider = parseStringFlag(args, '--llm-provider');\n  const llmModel = parseStringFlag(args, '--llm-model');\n  const llmUrl = parseStringFlag(args, '--llm-url');\n  const llmContextWindow = parseStringFlag(args, '--llm-context-window');\n  const llmMaxTokens = parseStringFlag(args, '--llm-max-tokens');\n  if (llmProvider || llmModel || llmUrl || llmContextWindow || llmMaxTokens) {\n    console.log('Note: LLM configuration is managed by the Myco agent. LLM flags are ignored.');\n  }\n\n  // Build partial embedding update from flags\n  const updates: Partial<EmbeddingProviderConfig> = {};\n\n  const embeddingProvider = parseStringFlag(args, '--embedding-provider');\n  if (embeddingProvider !== undefined) updates.provider = embeddingProvider as EmbeddingProviderConfig['provider'];\n\n  const embeddingModel = parseStringFlag(args, '--embedding-model');\n  if (embeddingModel !== undefined) updates.model = embeddingModel;\n\n  const embeddingUrl = parseStringFlag(args, '--embedding-url');\n  if (embeddingUrl !== undefined) updates.base_url = embeddingUrl;\n\n  // Apply the update through the single write gate\n  const updated = updateConfig(vaultDir, (config) => withEmbedding(config, updates));\n\n  console.log('Embedding configuration updated.');\n  console.log(JSON.stringify(updated.embedding, null, 2));\n\n  if (embeddingModel !== undefined) {\n    console.log('\\nWarning: changing the embedding model requires a full vector index rebuild.');\n    console.log('Run: myco rebuild');\n  }\n\n  if (fs.existsSync(path.join(vaultDir, DAEMON_STATE_FILENAME))) {\n    console.log('\\nNote: restart the daemon for changes to take effect (myco restart)');\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,OAAO,QAAQ;AACf,OAAO,UAAU;AAMjB,IAAM,wBAAwB;AAE9B,IAAM,QAAQ;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAcd,eAAsB,IAAI,MAAgB,UAAiC;AAEzE,MAAI,KAAK,SAAS,QAAQ,GAAG;AAC3B,UAAM,SAAS,WAAW,QAAQ;AAClC,YAAQ,IAAI,KAAK,UAAU,OAAO,WAAW,MAAM,CAAC,CAAC;AACrD;AAAA,EACF;AAGA,MAAI,KAAK,WAAW,GAAG;AACrB,YAAQ,IAAI,KAAK;AACjB;AAAA,EACF;AAGA,QAAM,cAAc,gBAAgB,MAAM,gBAAgB;AAC1D,QAAM,WAAW,gBAAgB,MAAM,aAAa;AACpD,QAAM,SAAS,gBAAgB,MAAM,WAAW;AAChD,QAAM,mBAAmB,gBAAgB,MAAM,sBAAsB;AACrE,QAAM,eAAe,gBAAgB,MAAM,kBAAkB;AAC7D,MAAI,eAAe,YAAY,UAAU,oBAAoB,cAAc;AACzE,YAAQ,IAAI,8EAA8E;AAAA,EAC5F;AAGA,QAAM,UAA4C,CAAC;AAEnD,QAAM,oBAAoB,gBAAgB,MAAM,sBAAsB;AACtE,MAAI,sBAAsB,OAAW,SAAQ,WAAW;AAExD,QAAM,iBAAiB,gBAAgB,MAAM,mBAAmB;AAChE,MAAI,mBAAmB,OAAW,SAAQ,QAAQ;AAElD,QAAM,eAAe,gBAAgB,MAAM,iBAAiB;AAC5D,MAAI,iBAAiB,OAAW,SAAQ,WAAW;AAGnD,QAAM,UAAU,aAAa,UAAU,CAAC,WAAW,cAAc,QAAQ,OAAO,CAAC;AAEjF,UAAQ,IAAI,kCAAkC;AAC9C,UAAQ,IAAI,KAAK,UAAU,QAAQ,WAAW,MAAM,CAAC,CAAC;AAEtD,MAAI,mBAAmB,QAAW;AAChC,YAAQ,IAAI,+EAA+E;AAC3F,YAAQ,IAAI,mBAAmB;AAAA,EACjC;AAEA,MAAI,GAAG,WAAW,KAAK,KAAK,UAAU,qBAAqB,CAAC,GAAG;AAC7D,YAAQ,IAAI,sEAAsE;AAAA,EACpF;AACF;","names":[]}
+{"version":3,"sources":["../src/cli/setup-llm.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport { loadConfig, updateConfig } from '../config/loader.js';\nimport { withEmbedding } from '../config/updates.js';\nimport { parseStringFlag } from './shared.js';\nimport type { EmbeddingProviderConfig } from '../config/schema.js';\n\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\nconst USAGE = `Usage: myco setup-llm [options]\n\nConfigure embedding provider settings.\n\nIn v3, LLM configuration is managed by the Myco agent (Claude Agent SDK).\nOnly embedding settings are user-configurable.\n\nOptions:\n  --embedding-provider <name>   Embedding provider (ollama, openai-compatible)\n  --embedding-model <name>      Embedding model name\n  --embedding-url <url>         Embedding provider base URL\n  --show                        Show current settings and exit\n`;\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  // Show current settings\n  if (args.includes('--show')) {\n    const config = loadConfig(vaultDir);\n    console.log(JSON.stringify(config.embedding, null, 2));\n    return;\n  }\n\n  // No flags = show usage\n  if (args.length === 0) {\n    console.log(USAGE);\n    return;\n  }\n\n  // Warn about removed LLM flags\n  const llmProvider = parseStringFlag(args, '--llm-provider');\n  const llmModel = parseStringFlag(args, '--llm-model');\n  const llmUrl = parseStringFlag(args, '--llm-url');\n  const llmContextWindow = parseStringFlag(args, '--llm-context-window');\n  const llmMaxTokens = parseStringFlag(args, '--llm-max-tokens');\n  if (llmProvider || llmModel || llmUrl || llmContextWindow || llmMaxTokens) {\n    console.log('Note: LLM configuration is managed by the Myco agent. LLM flags are ignored.');\n  }\n\n  // Build partial embedding update from flags\n  const updates: Partial<EmbeddingProviderConfig> = {};\n\n  const embeddingProvider = parseStringFlag(args, '--embedding-provider');\n  if (embeddingProvider !== undefined) updates.provider = embeddingProvider as EmbeddingProviderConfig['provider'];\n\n  const embeddingModel = parseStringFlag(args, '--embedding-model');\n  if (embeddingModel !== undefined) updates.model = embeddingModel;\n\n  const embeddingUrl = parseStringFlag(args, '--embedding-url');\n  if (embeddingUrl !== undefined) updates.base_url = embeddingUrl;\n\n  // Apply the update through the single write gate\n  const updated = updateConfig(vaultDir, (config) => withEmbedding(config, updates));\n\n  console.log('Embedding configuration updated.');\n  console.log(JSON.stringify(updated.embedding, null, 2));\n\n  if (embeddingModel !== undefined) {\n    console.log('\\nWarning: changing the embedding model requires a full vector index rebuild.');\n    console.log('Run: myco rebuild');\n  }\n\n  if (fs.existsSync(path.join(vaultDir, DAEMON_STATE_FILENAME))) {\n    console.log('\\nNote: restart the daemon for changes to take effect (myco restart)');\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,OAAO,QAAQ;AACf,OAAO,UAAU;AAMjB,IAAM,wBAAwB;AAE9B,IAAM,QAAQ;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAcd,eAAsB,IAAI,MAAgB,UAAiC;AAEzE,MAAI,KAAK,SAAS,QAAQ,GAAG;AAC3B,UAAM,SAAS,WAAW,QAAQ;AAClC,YAAQ,IAAI,KAAK,UAAU,OAAO,WAAW,MAAM,CAAC,CAAC;AACrD;AAAA,EACF;AAGA,MAAI,KAAK,WAAW,GAAG;AACrB,YAAQ,IAAI,KAAK;AACjB;AAAA,EACF;AAGA,QAAM,cAAc,gBAAgB,MAAM,gBAAgB;AAC1D,QAAM,WAAW,gBAAgB,MAAM,aAAa;AACpD,QAAM,SAAS,gBAAgB,MAAM,WAAW;AAChD,QAAM,mBAAmB,gBAAgB,MAAM,sBAAsB;AACrE,QAAM,eAAe,gBAAgB,MAAM,kBAAkB;AAC7D,MAAI,eAAe,YAAY,UAAU,oBAAoB,cAAc;AACzE,YAAQ,IAAI,8EAA8E;AAAA,EAC5F;AAGA,QAAM,UAA4C,CAAC;AAEnD,QAAM,oBAAoB,gBAAgB,MAAM,sBAAsB;AACtE,MAAI,sBAAsB,OAAW,SAAQ,WAAW;AAExD,QAAM,iBAAiB,gBAAgB,MAAM,mBAAmB;AAChE,MAAI,mBAAmB,OAAW,SAAQ,QAAQ;AAElD,QAAM,eAAe,gBAAgB,MAAM,iBAAiB;AAC5D,MAAI,iBAAiB,OAAW,SAAQ,WAAW;AAGnD,QAAM,UAAU,aAAa,UAAU,CAAC,WAAW,cAAc,QAAQ,OAAO,CAAC;AAEjF,UAAQ,IAAI,kCAAkC;AAC9C,UAAQ,IAAI,KAAK,UAAU,QAAQ,WAAW,MAAM,CAAC,CAAC;AAEtD,MAAI,mBAAmB,QAAW;AAChC,YAAQ,IAAI,+EAA+E;AAC3F,YAAQ,IAAI,mBAAmB;AAAA,EACjC;AAEA,MAAI,GAAG,WAAW,KAAK,KAAK,UAAU,qBAAqB,CAAC,GAAG;AAC7D,YAAQ,IAAI,sEAAsE;AAAA,EACpF;AACF;","names":[]}

package/dist/src/agent/definitions/agent.yaml

@@ -5,8 +5,8 @@ name: myco-agent
 displayName: Myco Agent
 description: >
   Default intelligence agent that processes captured session data, extracts
-  observations (spores), builds the knowledge graph, manages spore lifecycle,
-  and synthesizes digest extracts.
+  observations (spores), manages spore lifecycle, and synthesizes digest
+  extracts.
 model: claude-sonnet-4-20250514
 maxTurns: 30
 timeoutSeconds: 300
@@ -15,19 +15,17 @@ systemPromptPath: ../prompts/agent.md
 tools:
   # Read tools
   - vault_unprocessed
+  - vault_session_summary_material
   - vault_spores
   - vault_sessions
   - vault_search_fts
   - vault_search_semantic
   - vault_state
-  - vault_entities
   - vault_edges
   - vault_skill_candidates
   - vault_skill_records
   # Write tools
   - vault_create_spore
-  - vault_create_entity
-  - vault_create_edge
   - vault_resolve_spore
   - vault_update_session
   - vault_mark_processed
@@ -35,3 +33,9 @@ tools:
   - vault_write_digest
   - vault_set_state
   - vault_report
+  # Code exploration tools — used by vault-seed to infer knowledge from
+  # source when no session data exists yet.
+  - fs_read
+  - fs_list
+  - fs_tree
+  - code_grep

package/dist/src/agent/definitions/tasks/cortex-instructions.yaml

@@ -0,0 +1,93 @@
+# =============================================================================
+# Built-in Task: Cortex Instructions
+# =============================================================================
+
+name: cortex-instructions
+displayName: Cortex Instructions
+description: >
+  Author compact session-start instructions that teach downstream agents how
+  to use Myco tool behavior correctly, especially retrieval and plan persistence.
+agent: myco-agent
+isDefault: false
+reasoningLevel: low
+maxTurns: 12
+timeoutSeconds: 180
+schedule:
+  enabled: true
+  intervalSeconds: 3600
+  runIn:
+    - idle
+    - sleep
+
+prompt: |
+  Author compact session-start instructions for another coding agent.
+
+  You will receive:
+  - current context configuration
+  - the available Myco tool capabilities
+  - tool guidance that must be encoded
+  - a digest excerpt plus recent sessions, spores, and plans
+  - authoring requirements that constrain the final output
+
+  Your job is to produce concise markdown instructions for session start.
+
+  Requirements:
+  - Start with the heading `## Myco-Enabled Project`.
+  - Immediately follow with one brief sentence explaining that Myco provides project memory, prior decisions, plans, and retrieval tools for this project.
+  - Teach the most useful Myco tool behavior, not implementation details.
+  - Mention Myco tools using backticks.
+  - Use the recent vault context to make the instructions feel current when it adds signal.
+  - Keep the heading and intro brief so most tokens go to retrieval guidance.
+  - Keep the output compact and ready for direct injection.
+  - Do not restate AGENTS.md.
+  - Do not invent unavailable tools.
+  - Do not tell the agent to call `myco_skills`; project and Myco skills are already registered separately.
+
+  Call `vault_report` with action "cortex_instructions" and:
+  - summary: what the instructions emphasize
+  - details.content: the final markdown instructions
+
+phases:
+  - name: research
+    prompt: |
+      Review the provided digest excerpt and recent vault activity first.
+
+      Then use vault tools selectively to confirm what is current and high-signal
+      enough to deserve mention in the session-start instructions. Prefer the
+      smallest number of reads that sharpen the instructions.
+
+      Focus on:
+      - which Myco MCP tools matter most right now
+      - which current project hotspots or active workstreams are worth naming
+      - whether recent sessions, spores, or active plans reveal a better tool-use hint
+
+      Do not spend time enumerating every note. Gather only what improves the
+      final session-start instructions.
+    tools:
+      - vault_read_digest
+      - vault_sessions
+      - vault_session_summary_material
+      - vault_spores
+      - vault_search_fts
+      - vault_search_semantic
+    maxTurns: 10
+    required: true
+    readOnly: true
+
+  - name: author
+    dependsOn: [research]
+    prompt: |
+      Write the final session-start instructions.
+
+      The output should:
+      - open with the heading `## Myco-Enabled Project` and one brief sentence of context
+      - teach the agent how to retrieve the right Myco knowledge on demand and persist plans when appropriate
+      - mention the most relevant current project activity when it adds value
+      - avoid generic boilerplate
+      - avoid telling the agent to call `myco_skills`
+
+      Report the final markdown via `vault_report`.
+    tools:
+      - vault_report
+    maxTurns: 4
+    required: true

package/dist/src/agent/definitions/tasks/cortex-prompt-builder.yaml

@@ -0,0 +1,67 @@
+# =============================================================================
+# Built-in Task: Cortex Prompt Builder
+# =============================================================================
+
+name: cortex-prompt-builder
+displayName: Cortex Prompt Builder
+description: >
+  Build a high-quality, Myco-informed prompt for a target symbiont while
+  respecting whether session-start instructions will be injected separately.
+agent: myco-agent
+isDefault: false
+reasoningLevel: default
+maxTurns: 24
+timeoutSeconds: 300
+
+prompt: |
+  Build a strong, pasteable prompt for a target coding agent.
+
+  The instruction payload gives you:
+  - the user's goal
+  - the target symbiont and whether session-start instructions will be injected
+  - the current Cortex instructions when they must be inlined
+
+  Use the vault tools to gather the most relevant project context:
+  - digest for broad orientation
+  - spores for prior decisions, gotchas, and bug fixes
+  - sessions and plan-related search results for recent or approved work
+  - skill records for repeatable project procedures
+  - search tools when you need targeted follow-up
+
+  Output requirements:
+  - Produce one final prompt suitable for direct paste into the target agent.
+  - If the instruction payload says to inline Cortex instructions, include them.
+  - If the instruction payload says session-start injection is supported, omit the
+    Cortex instructions from the final prompt.
+  - Prefer concise, high-signal context over long dumps.
+  - Include concrete validations when the task implies implementation work.
+
+  Call `vault_report` with action "cortex_prompt_builder" and:
+  - summary: short description of the brief you produced
+  - details.prompt: the final prompt text
+
+phases:
+  - name: build
+    prompt: |
+      Gather the smallest set of relevant Myco context for this build request,
+      then write the final prompt and report it via `vault_report`.
+
+      Use digest, search, sessions, plans, spores, and skills selectively.
+      Avoid exhaustive searching; gather what you need to write the prompt.
+
+      The final output must be a single prompt suitable for direct paste into
+      the target agent. Respect the delivery contract from the instruction
+      payload when deciding whether to inline the current Cortex instructions.
+
+      Before finishing, call `vault_report` with action `cortex_prompt_builder`
+      and put the final prompt in `details.prompt`.
+    tools:
+      - vault_read_digest
+      - vault_sessions
+      - vault_spores
+      - vault_skill_records
+      - vault_search_fts
+      - vault_search_semantic
+      - vault_report
+    maxTurns: 18
+    required: true

package/dist/src/agent/definitions/tasks/digest-only.yaml

@@ -13,7 +13,7 @@ description: >
   to spores or graph data.
 agent: myco-agent
 isDefault: false
-model: claude-sonnet-4-6
+reasoningLevel: default
 maxTurns: 28
 timeoutSeconds: 1800
 

package/dist/src/agent/definitions/tasks/extract-only.yaml

@@ -13,7 +13,7 @@ description: >
   quick pass that captures knowledge without full reasoning overhead.
 agent: myco-agent
 isDefault: false
-model: claude-haiku-4-5-20251001
+reasoningLevel: low
 maxTurns: 30
 timeoutSeconds: 300
 

package/dist/src/agent/definitions/tasks/review-session.yaml

@@ -1,24 +1,24 @@
 # =============================================================================
 # Built-in Task: Review Session
 # =============================================================================
-# Targeted end-to-end pass over a single session: extract spores, build
-# graph entities and edges, run supersession checks, update title/summary.
+# Targeted end-to-end pass over a single session: extract spores, run
+# supersession checks, update title/summary.
 # =============================================================================
 
 name: review-session
 displayName: Review Session
 description: >
   Process a single session end-to-end. Extracts spores from all prompt
-  batches in the session, builds graph entities and edges, runs supersession
-  checks, and generates the session title and summary.
+  batches in the session, runs supersession checks, and generates the
+  session title and summary.
 agent: myco-agent
 isDefault: false
-model: claude-sonnet-4-6
-maxTurns: 40
+reasoningLevel: default
+maxTurns: 30
 timeoutSeconds: 480
 
 prompt: |
-  Review the specified session end-to-end. Budget: ~35 turns.
+  Review the specified session end-to-end. Budget: ~25 turns.
 
   Target session: {{session_id}}
 
@@ -57,31 +57,7 @@ prompt: |
   After processing all batches: call `vault_mark_processed` for each batch,
   then call `vault_set_state` to update the cursor.
 
-  ## Phase 3 — Graph (budget: 10 turns)
-
-  Build entities and semantic edges for knowledge discovered in this session.
-
-  1. Call `vault_spores` to review the spores just created plus existing ones
-  2. Call `vault_entities` and `vault_edges` to see what already exists
-  3. Check `vault_spores` for cross-session references before creating entities.
-     Only create entities referenced in 2+ sessions. For a single-session review,
-     this means the entity must also appear in spores from OTHER sessions.
-  4. For valid entity candidates:
-     - Call `vault_create_entity` with type: component | concept | person
-     - Good: "DaemonClient", "cursor-based pagination" — specific named things
-     - Bad: "testing phase", "code quality" — abstract categories
-  5. For each entity (new and existing relevant ones):
-     - Call `vault_search_semantic` with the entity name to find related spores
-     - Before creating, call `vault_edges` with source_id and target_id to
-       check if the edge already exists
-     - Call `vault_create_edge` with type REFERENCES, source_type spore,
-       target_type entity for each relevant spore
-  6. Create structural edges: DEPENDS_ON (entity→entity), AFFECTS (spore→entity)
-
-  Always include source_type and target_type on every edge.
-  Do NOT create lineage edges (FROM_SESSION, EXTRACTED_FROM, etc.).
-
-  ## Phase 4 — Supersession Check (budget: 3 turns)
+  ## Phase 3 — Supersession Check (budget: 3 turns)
 
   Scan active spores for newly introduced redundancy:
   1. Call `vault_spores` with status "active" to see the current set
@@ -90,7 +66,7 @@ prompt: |
   3. Only supersede when the new information genuinely replaces the old;
      when in doubt, keep both
 
-  ## Phase 5 — Title & Summary (budget: 3 turns)
+  ## Phase 4 — Title & Summary (budget: 3 turns)
 
   1. Call `vault_sessions` to check the current title and summary
   2. Review the prompt batches you processed in Phase 2 — use user_prompt
@@ -104,14 +80,13 @@ prompt: |
   Bad: "/git-worktree", "Help me fix the bug in..."
   Summary: 2-4 sentences on key work done + outcomes.
 
-  ## Phase 6 — Report (budget: 1 turn)
+  ## Phase 5 — Report (budget: 1 turn)
 
   Call `vault_report` with action "complete":
   - Session reviewed: {{session_id}}
   - Batches processed: N
   - Spores created: N (by type)
   - Spores superseded: N
-  - Entities created: N, edges created: N
   - Title/summary updated: yes/no
 
 toolOverrides:
@@ -120,12 +95,8 @@ toolOverrides:
   - vault_sessions
   - vault_search_fts
   - vault_search_semantic
-  - vault_entities
-  - vault_edges
   - vault_create_spore
   - vault_resolve_spore
-  - vault_create_entity
-  - vault_create_edge
   - vault_update_session
   - vault_mark_processed
   - vault_set_state

package/dist/src/agent/definitions/tasks/skill-evolve.yaml

@@ -10,7 +10,7 @@ prompt: >-
   overlap. The instruction contains pre-filtered skills with their
   content, new spore IDs, and pre-computed similarity analysis.
 isDefault: false
-model: claude-sonnet-4-6
+reasoningLevel: default
 maxTurns: 48
 timeoutSeconds: 1800
 schedule:
@@ -25,7 +25,7 @@ params:
   max_skills_per_run: 8
 phases:
   - name: inventory
-    model: claude-haiku-4-5-20251001
+    reasoningLevel: low
     prompt: |
       The instruction contains pre-computed structural analysis of
       all active skills. Two mechanical signals are provided:
@@ -82,7 +82,7 @@ phases:
     readOnly: true
 
   - name: assess
-    model: claude-sonnet-4-6
+    reasoningLevel: default
     prompt: |
       Read the inventory analysis from vault_state
       (key: skill-evolve-inventory).
@@ -157,7 +157,7 @@ phases:
       - inventory
 
   - name: act
-    model: claude-haiku-4-5-20251001
+    reasoningLevel: low
     prompt: |
       Read classifications from vault_state
       (key: skill-evolve-classifications). Parse the JSON.