@goondocks/myco 0.20.2 → 0.21.0

package/dist/{cli-GGPWH4UO.js → cli-LNYSTDQM.js}

@@ -2,19 +2,21 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   loadEnv
-} from "./chunk-KESLPBKV.js";
+} from "./chunk-JR54LTPP.js";
 import "./chunk-SAKJMNSR.js";
-import "./chunk-Q36VMZST.js";
-import "./chunk-FMRZ26U5.js";
-import "./chunk-OD4AA7PV.js";
+import "./chunk-VHNRMM4O.js";
+import "./chunk-X3IGT5RV.js";
+import "./chunk-53RPGOEN.js";
+import "./chunk-OUJSQSKE.js";
+import "./chunk-POEPHBQK.js";
 import "./chunk-MYX5NCRH.js";
 import {
   resolveVaultDir
 } from "./chunk-CUDIZJY7.js";
-import "./chunk-VVNL26WX.js";
-import "./chunk-XG5RRUYF.js";
+import "./chunk-P66DLD6G.js";
+import "./chunk-BUTL6IFS.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-FLLBJLHM.js";
+import "./chunk-6C6QZ4PM.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
@@ -43,6 +45,7 @@ Commands:
   setup-llm [options]      Configure LLM and embedding providers
   setup-digest [options]   Configure digest and capture settings
   agent [options]          Run the intelligence agent
+  agent eval [options]    Run an evaluation matrix across runtime/reasoning/model variants
   task <subcommand>        Manage agent task definitions
   team <init|upgrade>      Provision or upgrade team sync infrastructure
   doctor [--fix]          Check vault health and repair issues
@@ -59,29 +62,29 @@ async function main() {
     process.stdout.write(USAGE);
     return;
   }
-  if (cmd === "init") return (await import("./init-LMYOVZAV.js")).run(args);
-  if (cmd === "detect-providers") return (await import("./detect-providers-5KOPZ7J2.js")).run(args);
+  if (cmd === "init") return (await import("./init-KG3TYVGE.js")).run(args);
+  if (cmd === "detect-providers") return (await import("./detect-providers-ILLQZROY.js")).run(args);
   if (cmd === "version" || cmd === "--version" || cmd === "-v") {
-    const { getPluginVersion } = await import("./version-XMPPJQHR.js");
+    const { getPluginVersion } = await import("./version-GQAFBBPX.js");
     console.log(getPluginVersion());
     return;
   }
-  if (cmd === "mcp") return (await import("./server-AGVYZVP5.js")).main();
+  if (cmd === "mcp") return (await import("./server-AHUR6CWF.js")).main();
   if (cmd === "hook") {
     const hookName = args[0];
     const HOOK_DISPATCH = {
-      "session-start": () => import("./session-start-LAFICHII.js"),
-      "session-end": () => import("./session-end-FT27DWYZ.js"),
-      "stop": () => import("./stop-ZPIKVLH4.js"),
-      "user-prompt-submit": () => import("./user-prompt-submit-N36KUPHI.js"),
-      "post-tool-use": () => import("./post-tool-use-POGPTJBA.js"),
-      "post-tool-use-failure": () => import("./post-tool-use-failure-OT7BFWQW.js"),
-      "subagent-start": () => import("./subagent-start-UUE6EHQD.js"),
-      "subagent-stop": () => import("./subagent-stop-KQWWWPE6.js"),
-      "stop-failure": () => import("./stop-failure-2PX67YJC.js"),
-      "task-completed": () => import("./task-completed-WMHOFQ7B.js"),
-      "pre-compact": () => import("./pre-compact-OXVODKH4.js"),
-      "post-compact": () => import("./post-compact-JSECI44W.js")
+      "session-start": () => import("./session-start-WTA6GCOQ.js"),
+      "session-end": () => import("./session-end-LWJYQAXX.js"),
+      "stop": () => import("./stop-WRBTXEVT.js"),
+      "user-prompt-submit": () => import("./user-prompt-submit-ME2TBKOS.js"),
+      "post-tool-use": () => import("./post-tool-use-GMMSYBII.js"),
+      "post-tool-use-failure": () => import("./post-tool-use-failure-NZVSL2PO.js"),
+      "subagent-start": () => import("./subagent-start-VFGHQFVL.js"),
+      "subagent-stop": () => import("./subagent-stop-663FXG3P.js"),
+      "stop-failure": () => import("./stop-failure-32MGIG2Q.js"),
+      "task-completed": () => import("./task-completed-ZCQYEFMZ.js"),
+      "pre-compact": () => import("./pre-compact-LZ57DLUS.js"),
+      "post-compact": () => import("./post-compact-USAODKPQ.js")
     };
     const loader = HOOK_DISPATCH[hookName];
     if (!loader) {
@@ -90,13 +93,13 @@ async function main() {
     }
     return (await loader()).main();
   }
-  if (cmd === "daemon") return (await import("./main-YTBVRTBI.js")).main();
+  if (cmd === "daemon") return (await import("./main-5PRQNEEE.js")).main();
   if (cmd === "doctor") {
     const vaultDir2 = resolveVaultDir();
-    return (await import("./doctor-5JXJ36KA.js")).run(args, vaultDir2);
+    return (await import("./doctor-TI7EZ3RW.js")).run(args, vaultDir2);
   }
-  if (cmd === "update") return (await import("./update-O6V4RC4W.js")).run(args);
-  if (cmd === "remove") return (await import("./remove-N7ZPELFU.js")).run(args);
+  if (cmd === "update") return (await import("./update-3NBQTG32.js")).run(args);
+  if (cmd === "remove") return (await import("./remove-T3KE6C5N.js")).run(args);
   const vaultDir = resolveVaultDir();
   if (!fs.existsSync(path.join(vaultDir, "myco.yaml"))) {
     console.error(`No myco.yaml found in ${vaultDir}. Run 'myco init' first.`);
@@ -104,37 +107,41 @@ async function main() {
   }
   switch (cmd) {
     case "config":
-      return (await import("./config-OMCYHG2S.js")).run(args, vaultDir);
+      return (await import("./config-VC4ACP42.js")).run(args, vaultDir);
     case "verify":
-      return (await import("./verify-LXPV7NYG.js")).run(args, vaultDir);
+      return (await import("./verify-R76ZFJSZ.js")).run(args, vaultDir);
     case "stats":
-      return (await import("./stats-NVPWOYTE.js")).run(args, vaultDir);
+      return (await import("./stats-DFG6S23S.js")).run(args, vaultDir);
     case "search":
-      return (await import("./search-AHZEUNRR.js")).run(args, vaultDir);
+      return (await import("./search-GKFDGELR.js")).run(args, vaultDir);
     case "vectors":
-      return (await import("./search-AHZEUNRR.js")).runVectors(args, vaultDir);
+      return (await import("./search-GKFDGELR.js")).runVectors(args, vaultDir);
     case "session":
-      return (await import("./session-6IU4AXYP.js")).run(args, vaultDir);
+      return (await import("./session-2ZEPLWW6.js")).run(args, vaultDir);
     case "setup-llm":
-      return (await import("./setup-llm-77MP4I2G.js")).run(args, vaultDir);
+      return (await import("./setup-llm-E7UU5IO7.js")).run(args, vaultDir);
     case "setup-digest":
       return (await import("./setup-digest-4KDSXAIV.js")).run(args, vaultDir);
-    case "agent":
-      return (await import("./agent-run-X25Q2A6T.js")).run(args, vaultDir);
+    case "agent": {
+      if (args[0] === "eval") {
+        return (await import("./agent-eval-RJSQI5S2.js")).run(args.slice(1), vaultDir);
+      }
+      return (await import("./agent-run-2JSYFOKU.js")).run(args, vaultDir);
+    }
     case "task":
-      return (await import("./agent-tasks-7B6OFERB.js")).run(args, vaultDir);
+      return (await import("./agent-tasks-APFJIM2T.js")).run(args, vaultDir);
     case "team": {
       const sub = args[0];
-      if (sub === "init") return (await import("./team-LRZ6GTQK.js")).teamInit(vaultDir);
-      if (sub === "upgrade") return (await import("./team-LRZ6GTQK.js")).teamUpgrade(vaultDir);
+      if (sub === "init") return (await import("./team-JTI5CDUO.js")).teamInit(vaultDir);
+      if (sub === "upgrade") return (await import("./team-JTI5CDUO.js")).teamUpgrade(vaultDir);
       console.error("Usage: myco team <init|upgrade>");
       process.exit(1);
       break;
     }
     case "open":
-      return (await import("./open-HG2DX6RN.js")).run(args, vaultDir);
+      return (await import("./open-5A27BCSB.js")).run(args, vaultDir);
     case "restart":
-      return (await import("./restart-ADG5GBTB.js")).run(args, vaultDir);
+      return (await import("./restart-YWDEVZUJ.js")).run(args, vaultDir);
     case "logs":
       return (await import("./logs-7YVGGBIS.js")).run(args, vaultDir);
     default:
@@ -147,4 +154,4 @@ main().catch((err) => {
   console.error(`myco: ${err.message}`);
   process.exit(1);
 });
-//# sourceMappingURL=cli-GGPWH4UO.js.map
+//# sourceMappingURL=cli-LNYSTDQM.js.map

package/dist/cli-LNYSTDQM.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli.ts"],"sourcesContent":["#!/usr/bin/env node\nimport { loadEnv } from './cli/shared.js';\nimport { resolveVaultDir } from './vault/resolve.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nloadEnv();\n\nconst USAGE = `Usage: myco <command> [args]\n\nCommands:\n  init [options]           Initialize a new vault\n  update                   Update vault files and agent registration\n  remove [--remove-vault]    Remove Myco from this project (vault preserved by default)\n  remove --symbiont <name>   Unregister a single agent and remove from config\n  config <get|set> [args]  Get or set vault config values\n  detect-providers         Detect available LLM/embedding providers (JSON)\n  verify                   Test LLM and embedding connectivity\n  stats                    Vault health, index counts, vector count\n  search <query>           Combined FTS + vector search with scores\n  vectors <query>          Raw vector search with similarity scores\n  session [id|latest]      Show a session\n  logs [options]           View daemon logs\n  setup-llm [options]      Configure LLM and embedding providers\n  setup-digest [options]   Configure digest and capture settings\n  agent [options]          Run the intelligence agent\n  agent eval [options]    Run an evaluation matrix across runtime/reasoning/model variants\n  task <subcommand>        Manage agent task definitions\n  team <init|upgrade>      Provision or upgrade team sync infrastructure\n  doctor [--fix]          Check vault health and repair issues\n  open                     Open the dashboard in your browser\n  restart                  Restart the daemon\n  version                  Show plugin version\n  mcp                     Start the MCP stdio server\n  hook <name>             Run a hook (session-start, session-end, stop, user-prompt-submit, post-tool-use, post-tool-use-failure, subagent-start, subagent-stop, stop-failure, task-completed, pre-compact, post-compact)\n  daemon --vault <dir>    Start the daemon process\n`;\n\nasync function main(): Promise<void> {\n  const [cmd, ...args] = process.argv.slice(2);\n  if (!cmd || cmd === '--help' || cmd === '-h') {\n    process.stdout.write(USAGE);\n    return;\n  }\n\n  if (cmd === 'init') return (await import('./cli/init.js')).run(args);\n  if (cmd === 'detect-providers') return (await import('./cli/detect-providers.js')).run(args);\n  if (cmd === 'version' || cmd === '--version' || cmd === '-v') {\n    const { getPluginVersion } = await import('./version.js');\n    console.log(getPluginVersion());\n    return;\n  }\n  if (cmd === 'mcp') return (await import('./mcp/server.js')).main();\n  if (cmd === 'hook') {\n    const hookName = args[0];\n    const HOOK_DISPATCH: Record<string, () => Promise<{ main: () => Promise<void> }>> = {\n      'session-start': () => import('./hooks/session-start.js'),\n      'session-end': () => import('./hooks/session-end.js'),\n      'stop': () => import('./hooks/stop.js'),\n      'user-prompt-submit': () => import('./hooks/user-prompt-submit.js'),\n      'post-tool-use': () => import('./hooks/post-tool-use.js'),\n      'post-tool-use-failure': () => import('./hooks/post-tool-use-failure.js'),\n      'subagent-start': () => import('./hooks/subagent-start.js'),\n      'subagent-stop': () => import('./hooks/subagent-stop.js'),\n      'stop-failure': () => import('./hooks/stop-failure.js'),\n      'task-completed': () => import('./hooks/task-completed.js'),\n      'pre-compact': () => import('./hooks/pre-compact.js'),\n      'post-compact': () => import('./hooks/post-compact.js'),\n    };\n    const loader = HOOK_DISPATCH[hookName];\n    if (!loader) {\n      console.error(`Unknown hook: ${hookName}. Available: ${Object.keys(HOOK_DISPATCH).join(', ')}`);\n      process.exit(1);\n    }\n    return (await loader()).main();\n  }\n  if (cmd === 'daemon') return (await import('./daemon/main.js')).main();\n\n  if (cmd === 'doctor') {\n    const vaultDir = resolveVaultDir();\n    return (await import('./cli/doctor.js')).run(args, vaultDir);\n  }\n\n  if (cmd === 'update') return (await import('./cli/update.js')).run(args);\n  if (cmd === 'remove') return (await import('./cli/remove.js')).run(args);\n\n  const vaultDir = resolveVaultDir();\n  if (!fs.existsSync(path.join(vaultDir, 'myco.yaml'))) {\n    console.error(`No myco.yaml found in ${vaultDir}. Run 'myco init' first.`);\n    process.exit(1);\n  }\n\n  switch (cmd) {\n    case 'config': return (await import('./cli/config.js')).run(args, vaultDir);\n    case 'verify': return (await import('./cli/verify.js')).run(args, vaultDir);\n    case 'stats': return (await import('./cli/stats.js')).run(args, vaultDir);\n    case 'search': return (await import('./cli/search.js')).run(args, vaultDir);\n    case 'vectors': return (await import('./cli/search.js')).runVectors(args, vaultDir);\n    case 'session': return (await import('./cli/session.js')).run(args, vaultDir);\n    case 'setup-llm': return (await import('./cli/setup-llm.js')).run(args, vaultDir);\n    case 'setup-digest': return (await import('./cli/setup-digest.js')).run(args, vaultDir);\n    case 'agent': {\n      if (args[0] === 'eval') {\n        return (await import('./cli/agent-eval.js')).run(args.slice(1), vaultDir);\n      }\n      return (await import('./cli/agent-run.js')).run(args, vaultDir);\n    }\n    case 'task': return (await import('./cli/agent-tasks.js')).run(args, vaultDir);\n    case 'team': {\n      const sub = args[0];\n      if (sub === 'init') return (await import('./cli/team.js')).teamInit(vaultDir);\n      if (sub === 'upgrade') return (await import('./cli/team.js')).teamUpgrade(vaultDir);\n      console.error('Usage: myco team <init|upgrade>');\n      process.exit(1);\n      break;\n    }\n    case 'open': return (await import('./cli/open.js')).run(args, vaultDir);\n    case 'restart': return (await import('./cli/restart.js')).run(args, vaultDir);\n    case 'logs': return (await import('./cli/logs.js')).run(args, vaultDir);\n    default:\n      console.error(`Unknown command: ${cmd}`);\n      process.stdout.write(USAGE);\n      process.exit(1);\n  }\n}\n\nmain().catch((err) => {\n  console.error(`myco: ${(err as Error).message}`);\n  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package/dist/{client-YXQUTXVZ.js → client-NWE4TCNO.js}

@@ -2,14 +2,14 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   DaemonClient,
   resolveCliEntryPath
-} from "./chunk-VVNL26WX.js";
-import "./chunk-XG5RRUYF.js";
+} from "./chunk-P66DLD6G.js";
+import "./chunk-BUTL6IFS.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-FLLBJLHM.js";
+import "./chunk-6C6QZ4PM.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-PZUWP5VK.js";
 export {
   DaemonClient,
   resolveCliEntryPath
 };
-//# sourceMappingURL=client-YXQUTXVZ.js.map
+//# sourceMappingURL=client-NWE4TCNO.js.map

package/dist/{config-OMCYHG2S.js → config-VC4ACP42.js}

@@ -1,15 +1,17 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   withValue
-} from "./chunk-US4LNCAT.js";
+} from "./chunk-IPPMYQ2Y.js";
 import {
   loadConfig,
   updateConfig
-} from "./chunk-OD4AA7PV.js";
+} from "./chunk-53RPGOEN.js";
+import "./chunk-OUJSQSKE.js";
+import "./chunk-POEPHBQK.js";
 import {
   getAtPath
 } from "./chunk-ZXZPJJN3.js";
-import "./chunk-FLLBJLHM.js";
+import "./chunk-6C6QZ4PM.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
@@ -79,4 +81,4 @@ function parseValue(raw) {
 export {
   run
 };
-//# sourceMappingURL=config-OMCYHG2S.js.map
+//# sourceMappingURL=config-VC4ACP42.js.map

package/dist/{config-OMCYHG2S.js.map → config-VC4ACP42.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/cli/config.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport { loadConfig, updateConfig } from '../config/loader.js';\nimport { withValue } from '../config/updates.js';\nimport { getAtPath } from '../utils/dot-path.js';\n\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const [subcommand, key, ...rest] = args;\n\n  if (subcommand === 'get') {\n    if (!key) {\n      console.error('Usage: myco config get <dot.path.key>');\n      process.exit(1);\n    }\n    return configGet(key, vaultDir);\n  }\n\n  if (subcommand === 'set') {\n    const value = rest[0];\n    if (!key || value === undefined) {\n      console.error('Usage: myco config set <dot.path.key> <value>');\n      process.exit(1);\n    }\n    return configSet(key, value, vaultDir);\n  }\n\n  console.error('Usage: myco config <get|set> <dot.path.key> [value]');\n  process.exit(1);\n}\n\nfunction configGet(dotPath: string, vaultDir: string): void {\n  const config = loadConfig(vaultDir);\n  const value = getAtPath(config as Record<string, unknown>, dotPath);\n  if (value === undefined) {\n    console.error(`Key not found: ${dotPath}`);\n    process.exit(1);\n  }\n  console.log(typeof value === 'object' ? JSON.stringify(value, null, 2) : String(value));\n}\n\nfunction configSet(dotPath: string, rawValue: string, vaultDir: string): void {\n  const value = parseValue(rawValue);\n\n  try {\n    updateConfig(vaultDir, (config) => withValue(config, dotPath, value));\n  } catch (err) {\n    if (err instanceof Error && 'issues' in err) {\n      const issues = (err as { issues: Array<{ path: (string | number)[]; message: string }> }).issues;\n      console.error('Validation error:');\n      for (const issue of issues) {\n        console.error(`  ${issue.path.join('.')}: ${issue.message}`);\n      }\n      process.exit(1);\n    }\n    throw err;\n  }\n\n  console.log(`Set ${dotPath} = ${JSON.stringify(value)}`);\n\n  if (fs.existsSync(path.join(vaultDir, DAEMON_STATE_FILENAME))) {\n    console.log('Note: restart the daemon for changes to take effect (myco restart)');\n  }\n}\n\n/** Parse a string value as JSON (number, boolean, array, object), falling back to raw string. */\nfunction parseValue(raw: string): unknown {\n  try {\n    return JSON.parse(raw);\n  } catch {\n    return raw;\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;AAAA,OAAO,QAAQ;AACf,OAAO,UAAU;AAKjB,IAAM,wBAAwB;AAE9B,eAAsB,IAAI,MAAgB,UAAiC;AACzE,QAAM,CAAC,YAAY,KAAK,GAAG,IAAI,IAAI;AAEnC,MAAI,eAAe,OAAO;AACxB,QAAI,CAAC,KAAK;AACR,cAAQ,MAAM,uCAAuC;AACrD,cAAQ,KAAK,CAAC;AAAA,IAChB;AACA,WAAO,UAAU,KAAK,QAAQ;AAAA,EAChC;AAEA,MAAI,eAAe,OAAO;AACxB,UAAM,QAAQ,KAAK,CAAC;AACpB,QAAI,CAAC,OAAO,UAAU,QAAW;AAC/B,cAAQ,MAAM,+CAA+C;AAC7D,cAAQ,KAAK,CAAC;AAAA,IAChB;AACA,WAAO,UAAU,KAAK,OAAO,QAAQ;AAAA,EACvC;AAEA,UAAQ,MAAM,qDAAqD;AACnE,UAAQ,KAAK,CAAC;AAChB;AAEA,SAAS,UAAU,SAAiB,UAAwB;AAC1D,QAAM,SAAS,WAAW,QAAQ;AAClC,QAAM,QAAQ,UAAU,QAAmC,OAAO;AAClE,MAAI,UAAU,QAAW;AACvB,YAAQ,MAAM,kBAAkB,OAAO,EAAE;AACzC,YAAQ,KAAK,CAAC;AAAA,EAChB;AACA,UAAQ,IAAI,OAAO,UAAU,WAAW,KAAK,UAAU,OAAO,MAAM,CAAC,IAAI,OAAO,KAAK,CAAC;AACxF;AAEA,SAAS,UAAU,SAAiB,UAAkB,UAAwB;AAC5E,QAAM,QAAQ,WAAW,QAAQ;AAEjC,MAAI;AACF,iBAAa,UAAU,CAAC,WAAW,UAAU,QAAQ,SAAS,KAAK,CAAC;AAAA,EACtE,SAAS,KAAK;AACZ,QAAI,eAAe,SAAS,YAAY,KAAK;AAC3C,YAAM,SAAU,IAA0E;AAC1F,cAAQ,MAAM,mBAAmB;AACjC,iBAAW,SAAS,QAAQ;AAC1B,gBAAQ,MAAM,KAAK,MAAM,KAAK,KAAK,GAAG,CAAC,KAAK,MAAM,OAAO,EAAE;AAAA,MAC7D;AACA,cAAQ,KAAK,CAAC;AAAA,IAChB;AACA,UAAM;AAAA,EACR;AAEA,UAAQ,IAAI,OAAO,OAAO,MAAM,KAAK,UAAU,KAAK,CAAC,EAAE;AAEvD,MAAI,GAAG,WAAW,KAAK,KAAK,UAAU,qBAAqB,CAAC,GAAG;AAC7D,YAAQ,IAAI,oEAAoE;AAAA,EAClF;AACF;AAGA,SAAS,WAAW,KAAsB;AACxC,MAAI;AACF,WAAO,KAAK,MAAM,GAAG;AAAA,EACvB,QAAQ;AACN,WAAO;AAAA,EACT;AACF;","names":[]}
+{"version":3,"sources":["../src/cli/config.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport { loadConfig, updateConfig } from '../config/loader.js';\nimport { withValue } from '../config/updates.js';\nimport { getAtPath } from '../utils/dot-path.js';\n\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const [subcommand, key, ...rest] = args;\n\n  if (subcommand === 'get') {\n    if (!key) {\n      console.error('Usage: myco config get <dot.path.key>');\n      process.exit(1);\n    }\n    return configGet(key, vaultDir);\n  }\n\n  if (subcommand === 'set') {\n    const value = rest[0];\n    if (!key || value === undefined) {\n      console.error('Usage: myco config set <dot.path.key> <value>');\n      process.exit(1);\n    }\n    return configSet(key, value, vaultDir);\n  }\n\n  console.error('Usage: myco config <get|set> <dot.path.key> [value]');\n  process.exit(1);\n}\n\nfunction configGet(dotPath: string, vaultDir: string): void {\n  const config = loadConfig(vaultDir);\n  const value = getAtPath(config as Record<string, unknown>, dotPath);\n  if (value === undefined) {\n    console.error(`Key not found: ${dotPath}`);\n    process.exit(1);\n  }\n  console.log(typeof value === 'object' ? JSON.stringify(value, null, 2) : String(value));\n}\n\nfunction configSet(dotPath: string, rawValue: string, vaultDir: string): void {\n  const value = parseValue(rawValue);\n\n  try {\n    updateConfig(vaultDir, (config) => withValue(config, dotPath, value));\n  } catch (err) {\n    if (err instanceof Error && 'issues' in err) {\n      const issues = (err as { issues: Array<{ path: (string | number)[]; message: string }> }).issues;\n      console.error('Validation error:');\n      for (const issue of issues) {\n        console.error(`  ${issue.path.join('.')}: ${issue.message}`);\n      }\n      process.exit(1);\n    }\n    throw err;\n  }\n\n  console.log(`Set ${dotPath} = ${JSON.stringify(value)}`);\n\n  if (fs.existsSync(path.join(vaultDir, DAEMON_STATE_FILENAME))) {\n    console.log('Note: restart the daemon for changes to take effect (myco restart)');\n  }\n}\n\n/** Parse a string value as JSON (number, boolean, array, object), falling back to raw string. */\nfunction parseValue(raw: string): unknown {\n  try {\n    return JSON.parse(raw);\n  } catch {\n    return raw;\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;AAAA,OAAO,QAAQ;AACf,OAAO,UAAU;AAKjB,IAAM,wBAAwB;AAE9B,eAAsB,IAAI,MAAgB,UAAiC;AACzE,QAAM,CAAC,YAAY,KAAK,GAAG,IAAI,IAAI;AAEnC,MAAI,eAAe,OAAO;AACxB,QAAI,CAAC,KAAK;AACR,cAAQ,MAAM,uCAAuC;AACrD,cAAQ,KAAK,CAAC;AAAA,IAChB;AACA,WAAO,UAAU,KAAK,QAAQ;AAAA,EAChC;AAEA,MAAI,eAAe,OAAO;AACxB,UAAM,QAAQ,KAAK,CAAC;AACpB,QAAI,CAAC,OAAO,UAAU,QAAW;AAC/B,cAAQ,MAAM,+CAA+C;AAC7D,cAAQ,KAAK,CAAC;AAAA,IAChB;AACA,WAAO,UAAU,KAAK,OAAO,QAAQ;AAAA,EACvC;AAEA,UAAQ,MAAM,qDAAqD;AACnE,UAAQ,KAAK,CAAC;AAChB;AAEA,SAAS,UAAU,SAAiB,UAAwB;AAC1D,QAAM,SAAS,WAAW,QAAQ;AAClC,QAAM,QAAQ,UAAU,QAAmC,OAAO;AAClE,MAAI,UAAU,QAAW;AACvB,YAAQ,MAAM,kBAAkB,OAAO,EAAE;AACzC,YAAQ,KAAK,CAAC;AAAA,EAChB;AACA,UAAQ,IAAI,OAAO,UAAU,WAAW,KAAK,UAAU,OAAO,MAAM,CAAC,IAAI,OAAO,KAAK,CAAC;AACxF;AAEA,SAAS,UAAU,SAAiB,UAAkB,UAAwB;AAC5E,QAAM,QAAQ,WAAW,QAAQ;AAEjC,MAAI;AACF,iBAAa,UAAU,CAAC,WAAW,UAAU,QAAQ,SAAS,KAAK,CAAC;AAAA,EACtE,SAAS,KAAK;AACZ,QAAI,eAAe,SAAS,YAAY,KAAK;AAC3C,YAAM,SAAU,IAA0E;AAC1F,cAAQ,MAAM,mBAAmB;AACjC,iBAAW,SAAS,QAAQ;AAC1B,gBAAQ,MAAM,KAAK,MAAM,KAAK,KAAK,GAAG,CAAC,KAAK,MAAM,OAAO,EAAE;AAAA,MAC7D;AACA,cAAQ,KAAK,CAAC;AAAA,IAChB;AACA,UAAM;AAAA,EACR;AAEA,UAAQ,IAAI,OAAO,OAAO,MAAM,KAAK,UAAU,KAAK,CAAC,EAAE;AAEvD,MAAI,GAAG,WAAW,KAAK,KAAK,UAAU,qBAAqB,CAAC,GAAG;AAC7D,YAAQ,IAAI,oEAAoE;AAAA,EAClF;AACF;AAGA,SAAS,WAAW,KAAsB;AACxC,MAAI;AACF,WAAO,KAAK,MAAM,GAAG;AAAA,EACvB,QAAQ;AACN,WAAO;AAAA,EACT;AACF;","names":[]}

package/dist/{detect-providers-5KOPZ7J2.js → detect-providers-ILLQZROY.js}

@@ -1,9 +1,9 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   checkLocalProvider
-} from "./chunk-BPRIYNLE.js";
-import "./chunk-FMRZ26U5.js";
-import "./chunk-FLLBJLHM.js";
+} from "./chunk-TKAJ3JVF.js";
+import "./chunk-X3IGT5RV.js";
+import "./chunk-6C6QZ4PM.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-PZUWP5VK.js";
 
@@ -23,4 +23,4 @@ async function run(_args) {
 export {
   run
 };
-//# sourceMappingURL=detect-providers-5KOPZ7J2.js.map
+//# sourceMappingURL=detect-providers-ILLQZROY.js.map

package/dist/{doctor-5JXJ36KA.js → doctor-TI7EZ3RW.js}

@@ -1,18 +1,21 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   isProcessAlive
-} from "./chunk-KESLPBKV.js";
+} from "./chunk-JR54LTPP.js";
 import "./chunk-SAKJMNSR.js";
 import {
-  MYCO_MCP_SERVER_NAME
-} from "./chunk-Q36VMZST.js";
-import "./chunk-FMRZ26U5.js";
-import "./chunk-OD4AA7PV.js";
+  MYCO_MCP_SERVER_NAME,
+  isMycoHookGroup
+} from "./chunk-VHNRMM4O.js";
+import "./chunk-X3IGT5RV.js";
+import "./chunk-53RPGOEN.js";
+import "./chunk-OUJSQSKE.js";
+import "./chunk-POEPHBQK.js";
 import "./chunk-MYX5NCRH.js";
-import "./chunk-VVNL26WX.js";
-import "./chunk-XG5RRUYF.js";
+import "./chunk-P66DLD6G.js";
+import "./chunk-BUTL6IFS.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-FLLBJLHM.js";
+import "./chunk-6C6QZ4PM.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
@@ -27,13 +30,14 @@ var DAEMON_STATE_FILENAME = "daemon.json";
 var DB_FILENAME = "myco.db";
 var NAME_COL_WIDTH = 17;
 var CONTINUATION_INDENT = " ".repeat(NAME_COL_WIDTH);
+var MYCO_PLUGIN_FILE_MARKER = "myco:plugin-marker";
 async function checkVault(vaultDir) {
   const configPath = path.join(vaultDir, CONFIG_FILENAME);
   if (!fs.existsSync(configPath)) {
     return { check: { name: "Vault", status: "fail", detail: `${CONFIG_FILENAME} not found in ${vaultDir}`, fixable: false }, config: null };
   }
   try {
-    const { loadMergedConfig } = await import("./loader-CQYTFHEW.js");
+    const { loadMergedConfig } = await import("./loader-LX7TFRM6.js");
     const config = loadMergedConfig(vaultDir);
     return { check: { name: "Vault", status: "ok", detail: `.myco/ (v${config.version})`, fixable: false }, config };
   } catch (err) {
@@ -72,7 +76,7 @@ async function checkIntelligence(config) {
       return { name: "Intelligence", status: "ok", detail: `${label} (SDK handles auth)`, fixable: false };
     }
     if (provider.type === "ollama" || provider.type === "lmstudio") {
-      const { checkLocalProvider } = await import("./provider-check-43LAMSMH.js");
+      const { checkLocalProvider } = await import("./provider-check-ZEV5P4KM.js");
       const status = await checkLocalProvider(provider.type, provider.base_url);
       if (!status.available) {
         return { name: "Intelligence", status: "warn", detail: `${label} (not reachable)`, fixable: false };
@@ -86,7 +90,7 @@ async function checkIntelligence(config) {
 }
 async function checkEmbeddings(config) {
   try {
-    const { createEmbeddingProvider } = await import("./llm-TH4NLIRM.js");
+    const { createEmbeddingProvider } = await import("./llm-AGVEF5XD.js");
     const provider = createEmbeddingProvider(config.embedding);
     const available = await provider.isAvailable();
     const label = `${config.embedding.provider} / ${config.embedding.model}`;
@@ -101,7 +105,7 @@ async function checkEmbeddings(config) {
 async function checkAgents(vaultDir, config) {
   try {
     const { detectSymbionts } = await import("./detect-PXNM6TA7.js");
-    const { getEnabledSymbiontNames } = await import("./loader-CQYTFHEW.js");
+    const { getEnabledSymbiontNames } = await import("./loader-LX7TFRM6.js");
     const projectRoot = path.dirname(vaultDir);
     const detected = detectSymbionts(projectRoot);
     const enabledNames = config ? getEnabledSymbiontNames(config) : null;
@@ -151,9 +155,18 @@ async function checkAgents(vaultDir, config) {
   }
 }
 function isSymbiontRegistered(d, projectRoot) {
+  const registration = d.manifest.registration;
+  if (!registration) return false;
+  if (registration.mcpTarget) {
+    return isMcpRegistered(d, projectRoot, registration.mcpTarget);
+  }
+  if (registration.hooksTarget) {
+    return isHooksRegistered(d, projectRoot, registration.hooksTarget);
+  }
+  return false;
+}
+function isMcpRegistered(d, projectRoot, mcpTarget) {
   try {
-    const mcpTarget = d.manifest.registration?.mcpTarget;
-    if (!mcpTarget) return false;
     const mcpFile = path.join(projectRoot, mcpTarget);
     const raw = fs.readFileSync(mcpFile, "utf-8");
     if (mcpTarget.endsWith(".toml")) {
@@ -167,6 +180,25 @@ function isSymbiontRegistered(d, projectRoot) {
   }
   return false;
 }
+function isHooksRegistered(d, projectRoot, hooksTarget) {
+  try {
+    const hooksFile = path.join(projectRoot, hooksTarget);
+    const raw = fs.readFileSync(hooksFile, "utf-8");
+    if (d.manifest.registration?.hooksFormat === "plugin-file") {
+      return raw.includes(MYCO_PLUGIN_FILE_MARKER);
+    }
+    const config = JSON.parse(raw);
+    const hooks = config.hooks;
+    if (!hooks) return false;
+    return Object.values(hooks).some(
+      (groups) => Array.isArray(groups) && groups.some(
+        (group) => typeof group === "object" && group !== null && isMycoHookGroup(group)
+      )
+    );
+  } catch {
+  }
+  return false;
+}
 async function checkDaemon(vaultDir) {
   const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);
   if (!fs.existsSync(daemonFile)) {
@@ -272,7 +304,8 @@ async function run(args, vaultDir) {
 }
 export {
   fix,
+  isSymbiontRegistered,
   run,
   runChecks
 };
-//# sourceMappingURL=doctor-5JXJ36KA.js.map
+//# sourceMappingURL=doctor-TI7EZ3RW.js.map

package/dist/doctor-TI7EZ3RW.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/doctor.ts"],"sourcesContent":["/**\n * CLI: myco doctor — check vault health and auto-repair fixable issues.\n *\n * Runs a series of health checks against the vault directory and reports\n * status. With --fix, attempts to repair issues it can handle automatically.\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { isProcessAlive } from './shared.js';\nimport { MYCO_MCP_SERVER_NAME } from '../symbionts/installer.js';\nimport { isMycoHookGroup } from '../symbionts/install-helpers.js';\n\n// --- Named constants (no magic literals) ---\n\n\n/** Filename of the vault config file. */\nconst CONFIG_FILENAME = 'myco.yaml';\n\n/** Filename of the daemon state file. */\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\n/** Filename of the SQLite database. */\nconst DB_FILENAME = 'myco.db';\n\n/** Column width for the check name in output. */\nconst NAME_COL_WIDTH = 17;\n\n/** Prefix for indented continuation lines (e.g. multi-line agent output). */\nconst CONTINUATION_INDENT = ' '.repeat(NAME_COL_WIDTH);\n\n/** Marker embedded in Myco-managed plugin-file hook targets (Pi, opencode). */\nconst MYCO_PLUGIN_FILE_MARKER = 'myco:plugin-marker';\n\n// --- Types ---\n\nexport interface DoctorCheck {\n  name: string;\n  status: 'ok' | 'fail' | 'warn';\n  detail: string;\n  fixable: boolean;\n}\n\n// --- Checks ---\n\n/** Check that myco.yaml exists and parses. Returns the parsed config on success. */\nasync function checkVault(vaultDir: string): Promise<{ check: DoctorCheck; config: import('../config/schema.js').MycoConfig | null }> {\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  if (!fs.existsSync(configPath)) {\n    return { check: { name: 'Vault', status: 'fail', detail: `${CONFIG_FILENAME} not found in ${vaultDir}`, fixable: false }, config: null };\n  }\n  try {\n    const { loadMergedConfig } = await import('../config/loader.js');\n    const config = loadMergedConfig(vaultDir);\n    return { check: { name: 'Vault', status: 'ok', detail: `.myco/ (v${config.version})`, fixable: false }, config };\n  } catch (err) {\n    return { check: { name: 'Vault', status: 'fail', detail: `${CONFIG_FILENAME} parse error: ${(err as Error).message}`, fixable: false }, config: null };\n  }\n}\n\n/** Check that the SQLite database exists and can be queried. */\nasync function checkDatabase(vaultDir: string): Promise<DoctorCheck> {\n  const dbPath = path.join(vaultDir, DB_FILENAME);\n  if (!fs.existsSync(dbPath)) {\n    return { name: 'Database', status: 'fail', detail: `${DB_FILENAME} not found — run \\`myco init\\``, fixable: false };\n  }\n  try {\n    const { initDatabase, closeDatabase, vaultDbPath } = await import('../db/client.js');\n    const db = initDatabase(vaultDbPath(vaultDir));\n    const row = db.prepare('SELECT count(*) AS cnt FROM sessions').get() as { cnt: number } | undefined;\n    const count = row?.cnt ?? 0;\n    closeDatabase();\n    return { name: 'Database', status: 'ok', detail: `${DB_FILENAME} (${count.toLocaleString()} sessions)`, fixable: false };\n  } catch (err) {\n    // Ensure DB is closed even on error\n    try { const { closeDatabase } = await import('../db/client.js'); closeDatabase(); } catch { /* ignore */ }\n    return { name: 'Database', status: 'fail', detail: `Database error: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check that the intelligence (agent) provider is configured. */\nasync function checkIntelligence(config: import('../config/schema.js').MycoConfig): Promise<DoctorCheck> {\n  try {\n    const provider = config.agent.provider;\n\n    if (!provider) {\n      return { name: 'Intelligence', status: 'warn', detail: 'No agent provider configured — run `myco init` to set up', fixable: false };\n    }\n\n    const label = `${provider.type}${provider.model ? ` / ${provider.model}` : ''}`;\n\n    if (provider.type === 'anthropic') {\n      return { name: 'Intelligence', status: 'ok', detail: `${label} (SDK handles auth)`, fixable: false };\n    }\n\n    // Local provider — check reachability\n    if (provider.type === 'ollama' || provider.type === 'lmstudio') {\n      const { checkLocalProvider } = await import('../intelligence/provider-check.js');\n      const status = await checkLocalProvider(provider.type, provider.base_url);\n      if (!status.available) {\n        return { name: 'Intelligence', status: 'warn', detail: `${label} (not reachable)`, fixable: false };\n      }\n      return { name: 'Intelligence', status: 'ok', detail: label, fixable: false };\n    }\n\n    return { name: 'Intelligence', status: 'ok', detail: label, fixable: false };\n  } catch (err) {\n    return { name: 'Intelligence', status: 'fail', detail: `Intelligence check failed: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check that the embedding provider is configured and reachable. */\nasync function checkEmbeddings(config: import('../config/schema.js').MycoConfig): Promise<DoctorCheck> {\n  try {\n    const { createEmbeddingProvider } = await import('../intelligence/llm.js');\n    const provider = createEmbeddingProvider(config.embedding);\n    const available = await provider.isAvailable();\n    const label = `${config.embedding.provider} / ${config.embedding.model}`;\n    if (available) {\n      return { name: 'Embeddings', status: 'ok', detail: label, fixable: false };\n    }\n    return { name: 'Embeddings', status: 'warn', detail: `${label} (not reachable)`, fixable: false };\n  } catch (err) {\n    return { name: 'Embeddings', status: 'fail', detail: `Embedding check failed: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check symbiont detection and registration status. */\nasync function checkAgents(vaultDir: string, config: import('../config/schema.js').MycoConfig | null): Promise<DoctorCheck[]> {\n  try {\n    const { detectSymbionts } = await import('../symbionts/detect.js');\n    const { getEnabledSymbiontNames } = await import('../config/loader.js');\n    const projectRoot = path.dirname(vaultDir);\n    const detected = detectSymbionts(projectRoot);\n\n    const enabledNames = config ? getEnabledSymbiontNames(config) : null;\n\n    if (detected.length === 0 && !enabledNames) {\n      return [{ name: 'Agents', status: 'warn', detail: 'No symbionts detected', fixable: false }];\n    }\n\n    const checks: DoctorCheck[] = [];\n    for (const d of detected) {\n      const registered = isSymbiontRegistered(d, projectRoot);\n      const enabled = enabledNames ? enabledNames.has(d.manifest.name) : registered;\n\n      if (enabled && registered) {\n        checks.push({\n          name: checks.length === 0 ? 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'Agents' : '',\n          status: 'ok',\n          detail: `${d.manifest.displayName} (detected, not enabled)`,\n          fixable: false,\n        });\n      }\n    }\n\n    if (checks.length === 0) {\n      return [{ name: 'Agents', status: 'warn', detail: 'No symbionts detected or enabled', fixable: false }];\n    }\n\n    return checks;\n  } catch (err) {\n    return [{ name: 'Agents', status: 'fail', detail: `Agent check failed: ${(err as Error).message}`, fixable: false }];\n  }\n}\n\n/** Check if a symbiont has Myco registration artifacts installed. */\nexport function isSymbiontRegistered(\n  d: import('../symbionts/detect.js').DetectedSymbiont,\n  projectRoot: string,\n): boolean {\n  const registration = d.manifest.registration;\n  if (!registration) return false;\n\n  // Most symbionts have native MCP registration. For agents like Pi and\n  // Windsurf that intentionally omit mcpTarget, treat their hook/plugin\n  // registration as the source of truth instead of forcing a false warning.\n  if (registration.mcpTarget) {\n    return isMcpRegistered(d, projectRoot, registration.mcpTarget);\n  }\n  if (registration.hooksTarget) {\n    return isHooksRegistered(d, projectRoot, registration.hooksTarget);\n  }\n  return false;\n}\n\nfunction isMcpRegistered(\n  d: import('../symbionts/detect.js').DetectedSymbiont,\n  projectRoot: string,\n  mcpTarget: string,\n): boolean {\n  try {\n    const mcpFile = path.join(projectRoot, mcpTarget);\n    const raw = fs.readFileSync(mcpFile, 'utf-8');\n\n    // TOML: check for section header\n    if (mcpTarget.endsWith('.toml')) {\n      return raw.includes(`[mcp_servers.${MYCO_MCP_SERVER_NAME}]`);\n    }\n\n    // JSON: check for server entry under the configured key (defaults to 'mcpServers').\n    // opencode uses 'mcp' — without the manifest lookup, doctor reports opencode as\n    // unregistered even after a successful install.\n    const config = JSON.parse(raw) as Record<string, unknown>;\n    const serversKey = d.manifest.registration?.mcpServersKey ?? 'mcpServers';\n    const servers = config[serversKey] as Record<string, unknown> | undefined;\n    return !!servers?.[MYCO_MCP_SERVER_NAME];\n  } catch { /* config missing or malformed */ }\n  return false;\n}\n\nfunction isHooksRegistered(\n  d: import('../symbionts/detect.js').DetectedSymbiont,\n  projectRoot: string,\n  hooksTarget: string,\n): boolean {\n  try {\n    const hooksFile = path.join(projectRoot, hooksTarget);\n    const raw = fs.readFileSync(hooksFile, 'utf-8');\n\n    if (d.manifest.registration?.hooksFormat === 'plugin-file') {\n      return raw.includes(MYCO_PLUGIN_FILE_MARKER);\n    }\n\n    const config = JSON.parse(raw) as Record<string, unknown>;\n    const hooks = config.hooks as Record<string, unknown[]> | undefined;\n    if (!hooks) return false;\n\n    return Object.values(hooks).some((groups) =>\n      Array.isArray(groups) &&\n      groups.some((group) =>\n        typeof group === 'object' &&\n        group !== null &&\n        isMycoHookGroup(group as Record<string, unknown>),\n      ),\n    );\n  } catch { /* config missing or malformed */ }\n  return false;\n}\n\n/** Check the daemon state file and process liveness. */\nasync function checkDaemon(vaultDir: string): Promise<DoctorCheck> {\n  const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n  if (!fs.existsSync(daemonFile)) {\n    return { name: 'Daemon', status: 'warn', detail: 'Not running (no daemon.json)', fixable: false };\n  }\n  try {\n    const state = JSON.parse(fs.readFileSync(daemonFile, 'utf-8')) as { pid?: number; port?: number };\n    if (!state.pid) {\n      return { name: 'Daemon', status: 'warn', detail: 'daemon.json exists but no PID', fixable: true };\n    }\n    if (isProcessAlive(state.pid)) {\n      return { name: 'Daemon', status: 'ok', detail: `PID ${state.pid}, port ${state.port ?? 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Returns descriptions of actions taken. */\nexport async function fix(vaultDir: string, checks: DoctorCheck[]): Promise<string[]> {\n  const actions: string[] = [];\n\n  for (const check of checks) {\n    if (!check.fixable || check.status === 'ok') continue;\n\n    // Fix stale daemon.json\n    if (check.name === 'Daemon' && check.detail.includes('Stale')) {\n      const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n      fs.unlinkSync(daemonFile);\n      actions.push('Removed stale daemon.json');\n    }\n\n    // Fix malformed daemon.json\n    if (check.name === 'Daemon' && check.detail.includes('parse error')) {\n      const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n      fs.unlinkSync(daemonFile);\n      actions.push('Removed malformed daemon.json');\n    }\n\n    // Advise on database issues\n    if (check.name === 'Database' && check.status === 'fail') {\n      actions.push('Run `myco init` to initialize the database');\n    }\n  }\n\n  return actions;\n}\n\n// --- Output formatting ---\n\n/** Status label width (visible characters). */\nconst STATUS_COL_WIDTH = 6;\n\nconst STATUS_LABELS: Record<DoctorCheck['status'], { text: string; color: string }> = {\n  ok: { text: 'ok', color: '\\x1b[32m' },\n  fail: { text: 'FAIL', color: '\\x1b[31m' },\n  warn: { text: '!!', color: '\\x1b[33m' },\n};\n\nfunction formatCheck(check: DoctorCheck): string {\n  const name = check.name ? check.name.padEnd(NAME_COL_WIDTH) : CONTINUATION_INDENT;\n  const { text, color } = STATUS_LABELS[check.status];\n  const paddedText = text.padEnd(STATUS_COL_WIDTH);\n  return `  ${name}${color}${paddedText}\\x1b[0m${check.detail}`;\n}\n\n// --- CLI entry point ---\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const shouldFix = args.includes('--fix');\n\n  console.log('\\nmyco doctor\\n');\n\n  const checks = await runChecks(vaultDir);\n\n  for (const check of checks) {\n    console.log(formatCheck(check));\n  }\n\n  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package/dist/executor-F2YU7HXJ.js

@@ -0,0 +1,44 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  cleanupOnTaskFailure,
+  composePhasePrompt,
+  composeTaskPrompt,
+  computeWaves,
+  finalizeOnTaskSuccess,
+  resolvePhaseExecution,
+  runAgent
+} from "./chunk-NGH7U6A3.js";
+import "./chunk-6LB7XELY.js";
+import "./chunk-LVIY7P35.js";
+import "./chunk-ILJPRYES.js";
+import "./chunk-JZS6GZ6T.js";
+import "./chunk-FCJ5JV54.js";
+import "./chunk-U5EW2VIQ.js";
+import "./chunk-CISWUP5W.js";
+import "./chunk-X3IGT5RV.js";
+import "./chunk-F3OEQYLS.js";
+import "./chunk-RQSJLWP4.js";
+import "./chunk-CESKJD44.js";
+import "./chunk-RL5R4CQU.js";
+import "./chunk-53RPGOEN.js";
+import "./chunk-OUJSQSKE.js";
+import "./chunk-POEPHBQK.js";
+import "./chunk-MYX5NCRH.js";
+import "./chunk-BUTL6IFS.js";
+import "./chunk-LPUQPDC2.js";
+import "./chunk-6C6QZ4PM.js";
+import "./chunk-UUHLLQXO.js";
+import "./chunk-6LQIMRTC.js";
+import "./chunk-ODXLRR4U.js";
+import "./chunk-U6PF3YII.js";
+import "./chunk-PZUWP5VK.js";
+export {
+  cleanupOnTaskFailure,
+  composePhasePrompt,
+  composeTaskPrompt,
+  computeWaves,
+  finalizeOnTaskSuccess,
+  resolvePhaseExecution,
+  runAgent
+};
+//# sourceMappingURL=executor-F2YU7HXJ.js.map

package/dist/{init-LMYOVZAV.js → init-KG3TYVGE.js}

@@ -2,20 +2,22 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   VAULT_GITIGNORE,
   registerSymbionts
-} from "./chunk-KESLPBKV.js";
+} from "./chunk-JR54LTPP.js";
 import {
   parseStringFlag
 } from "./chunk-SAKJMNSR.js";
-import "./chunk-Q36VMZST.js";
-import "./chunk-FMRZ26U5.js";
+import "./chunk-VHNRMM4O.js";
+import "./chunk-X3IGT5RV.js";
 import {
   createSchema
-} from "./chunk-MYOZLMB2.js";
+} from "./chunk-RL5R4CQU.js";
 import {
   MycoConfigSchema,
   saveConfig,
   updateConfig
-} from "./chunk-OD4AA7PV.js";
+} from "./chunk-53RPGOEN.js";
+import "./chunk-OUJSQSKE.js";
+import "./chunk-POEPHBQK.js";
 import {
   closeDatabase,
   initDatabase,
@@ -24,10 +26,10 @@ import {
 import {
   resolveVaultDir
 } from "./chunk-CUDIZJY7.js";
-import "./chunk-VVNL26WX.js";
+import "./chunk-P66DLD6G.js";
 import {
   getPluginVersion
-} from "./chunk-XG5RRUYF.js";
+} from "./chunk-BUTL6IFS.js";
 import {
   detectSymbionts,
   loadManifests,
@@ -36,7 +38,7 @@ import {
 import "./chunk-LPUQPDC2.js";
 import {
   DEFAULT_OLLAMA_EMBEDDING_MODEL
-} from "./chunk-FLLBJLHM.js";
+} from "./chunk-6C6QZ4PM.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
@@ -78,7 +80,7 @@ async function run(args) {
     };
   }
   if (alreadyInitialized && isInteractive) {
-    const { loadMergedConfig } = await import("./loader-CQYTFHEW.js");
+    const { loadMergedConfig } = await import("./loader-LX7TFRM6.js");
     const config = loadMergedConfig(vaultDir);
     const agentProvider = config.agent.provider;
     const embConfig = config.embedding;
@@ -109,7 +111,7 @@ async function run(args) {
   let existingSymbionts;
   if (alreadyInitialized && isInteractive) {
     try {
-      const { loadMergedConfig } = await import("./loader-CQYTFHEW.js");
+      const { loadMergedConfig } = await import("./loader-LX7TFRM6.js");
       const existing = loadMergedConfig(vaultDir);
       existingSymbionts = existing.symbionts;
     } catch {
@@ -151,7 +153,7 @@ async function run(args) {
       registerSymbionts(selectedManifests, projectRoot, pkgRoot, "Registered");
     }
   }
-  const { DaemonClient } = await import("./client-YXQUTXVZ.js");
+  const { DaemonClient } = await import("./client-NWE4TCNO.js");
   const client = new DaemonClient(vaultDir);
   const daemonHealthy = await client.ensureRunning();
   let daemonUrl = "";
@@ -189,4 +191,4 @@ async function run(args) {
 export {
   run
 };
-//# sourceMappingURL=init-LMYOVZAV.js.map
+//# sourceMappingURL=init-KG3TYVGE.js.map