@genome-spy/core 0.29.0 → 0.30.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (234) hide show
  1. package/dist/index.es.js +16373 -0
  2. package/dist/index.js +43 -43
  3. package/package.json +10 -7
  4. package/src/data/collector.js +0 -183
  5. package/src/data/collector.test.js +0 -84
  6. package/src/data/dataFlow.js +0 -148
  7. package/src/data/dataFlow.test.js +0 -5
  8. package/src/data/facetNode.js +0 -17
  9. package/src/data/flow.test.js +0 -72
  10. package/src/data/flowBatch.d.ts +0 -40
  11. package/src/data/flowNode.js +0 -283
  12. package/src/data/flowNode.test.js +0 -50
  13. package/src/data/flowOptimizer.js +0 -123
  14. package/src/data/flowOptimizer.test.js +0 -193
  15. package/src/data/flowTestUtils.js +0 -63
  16. package/src/data/formats/fasta.js +0 -32
  17. package/src/data/formats/fasta.test.js +0 -27
  18. package/src/data/sources/dataSource.js +0 -22
  19. package/src/data/sources/dataSourceFactory.js +0 -24
  20. package/src/data/sources/dataUtils.js +0 -78
  21. package/src/data/sources/dynamicCallbackSource.js +0 -57
  22. package/src/data/sources/dynamicSource.js +0 -37
  23. package/src/data/sources/inlineSource.js +0 -67
  24. package/src/data/sources/inlineSource.test.js +0 -56
  25. package/src/data/sources/namedSource.js +0 -79
  26. package/src/data/sources/sequenceSource.js +0 -46
  27. package/src/data/sources/sequenceSource.test.js +0 -46
  28. package/src/data/sources/urlSource.js +0 -74
  29. package/src/data/transforms/aggregate.js +0 -70
  30. package/src/data/transforms/clone.js +0 -40
  31. package/src/data/transforms/clone.test.js +0 -11
  32. package/src/data/transforms/coverage.js +0 -187
  33. package/src/data/transforms/coverage.test.js +0 -123
  34. package/src/data/transforms/filter.js +0 -37
  35. package/src/data/transforms/filter.test.js +0 -18
  36. package/src/data/transforms/filterScoredLabels.js +0 -134
  37. package/src/data/transforms/flattenCompressedExons.js +0 -57
  38. package/src/data/transforms/flattenDelimited.js +0 -74
  39. package/src/data/transforms/flattenDelimited.test.js +0 -87
  40. package/src/data/transforms/flattenSequence.js +0 -39
  41. package/src/data/transforms/flattenSequence.test.js +0 -34
  42. package/src/data/transforms/formula.js +0 -39
  43. package/src/data/transforms/formula.test.js +0 -19
  44. package/src/data/transforms/identifier.js +0 -108
  45. package/src/data/transforms/identifier.test.js +0 -83
  46. package/src/data/transforms/linearizeGenomicCoordinate.js +0 -101
  47. package/src/data/transforms/measureText.js +0 -44
  48. package/src/data/transforms/pileup.js +0 -128
  49. package/src/data/transforms/pileup.test.js +0 -70
  50. package/src/data/transforms/project.js +0 -41
  51. package/src/data/transforms/project.test.js +0 -32
  52. package/src/data/transforms/regexExtract.js +0 -61
  53. package/src/data/transforms/regexExtract.test.js +0 -67
  54. package/src/data/transforms/regexFold.js +0 -141
  55. package/src/data/transforms/regexFold.test.js +0 -160
  56. package/src/data/transforms/sample.js +0 -101
  57. package/src/data/transforms/sample.test.js +0 -38
  58. package/src/data/transforms/stack.js +0 -137
  59. package/src/data/transforms/stack.test.js +0 -91
  60. package/src/data/transforms/transformFactory.js +0 -60
  61. package/src/embedApi.d.ts +0 -67
  62. package/src/encoder/accessor.js +0 -82
  63. package/src/encoder/accessor.test.js +0 -47
  64. package/src/encoder/encoder.js +0 -394
  65. package/src/encoder/encoder.test.js +0 -98
  66. package/src/fonts/Lato-Regular.json +0 -1267
  67. package/src/fonts/Lato-Regular.png +0 -0
  68. package/src/fonts/OFL.txt +0 -93
  69. package/src/fonts/README.md +0 -3
  70. package/src/fonts/bmFont.d.ts +0 -58
  71. package/src/fonts/bmFontManager.js +0 -357
  72. package/src/fonts/bmFontMetrics.js +0 -108
  73. package/src/genome/genome.js +0 -317
  74. package/src/genome/genome.test.js +0 -188
  75. package/src/genome/genomeStore.js +0 -54
  76. package/src/genome/locusFormat.js +0 -31
  77. package/src/genome/scaleIndex.d.ts +0 -38
  78. package/src/genome/scaleIndex.js +0 -166
  79. package/src/genome/scaleIndex.test.js +0 -78
  80. package/src/genome/scaleLocus.d.ts +0 -11
  81. package/src/genome/scaleLocus.js +0 -108
  82. package/src/genome/scaleLocus.test.js +0 -4
  83. package/src/genomeSpy.js +0 -784
  84. package/src/gl/arrayBuilder.js +0 -199
  85. package/src/gl/dataToVertices.js +0 -636
  86. package/src/gl/includes/common.glsl +0 -63
  87. package/src/gl/includes/picking.fragment.glsl +0 -1
  88. package/src/gl/includes/picking.vertex.glsl +0 -27
  89. package/src/gl/includes/sampleFacet.glsl +0 -107
  90. package/src/gl/includes/scales.glsl +0 -112
  91. package/src/gl/link.fragment.glsl +0 -18
  92. package/src/gl/link.vertex.glsl +0 -111
  93. package/src/gl/point.fragment.glsl +0 -123
  94. package/src/gl/point.vertex.glsl +0 -129
  95. package/src/gl/rect.fragment.glsl +0 -51
  96. package/src/gl/rect.vertex.glsl +0 -114
  97. package/src/gl/rule.fragment.glsl +0 -52
  98. package/src/gl/rule.vertex.glsl +0 -89
  99. package/src/gl/text.fragment.glsl +0 -31
  100. package/src/gl/text.vertex.glsl +0 -246
  101. package/src/gl/webGLHelper.js +0 -489
  102. package/src/img/bowtie.svg +0 -1
  103. package/src/img/genomespy-favicon.svg +0 -34
  104. package/src/index.html +0 -11
  105. package/src/index.js +0 -128
  106. package/src/marks/link.js +0 -175
  107. package/src/marks/mark.js +0 -975
  108. package/src/marks/markUtils.js +0 -125
  109. package/src/marks/pointMark.js +0 -251
  110. package/src/marks/rectMark.js +0 -241
  111. package/src/marks/rule.js +0 -250
  112. package/src/marks/text.js +0 -278
  113. package/src/node_modules/.vitest/results.json +0 -1
  114. package/src/scale/colorUtils.js +0 -184
  115. package/src/scale/glslScaleGenerator.js +0 -488
  116. package/src/scale/scale.js +0 -451
  117. package/src/scale/scale.test.js +0 -324
  118. package/src/scale/ticks.js +0 -203
  119. package/src/scale/ticks.test.js +0 -40
  120. package/src/singlePageApp.js +0 -13
  121. package/src/spec/axis.d.ts +0 -296
  122. package/src/spec/channel.d.ts +0 -430
  123. package/src/spec/data.d.ts +0 -196
  124. package/src/spec/font.d.ts +0 -15
  125. package/src/spec/genome.d.ts +0 -35
  126. package/src/spec/mark.d.ts +0 -429
  127. package/src/spec/root.d.ts +0 -17
  128. package/src/spec/sampleView.d.ts +0 -180
  129. package/src/spec/scale.d.ts +0 -273
  130. package/src/spec/title.d.ts +0 -102
  131. package/src/spec/tooltip.d.ts +0 -9
  132. package/src/spec/transform.d.ts +0 -479
  133. package/src/spec/view.d.ts +0 -201
  134. package/src/styles/genome-spy.scss +0 -153
  135. package/src/tooltip/dataTooltipHandler.js +0 -64
  136. package/src/tooltip/refseqGeneTooltipHandler.js +0 -78
  137. package/src/tooltip/tooltipHandler.ts +0 -12
  138. package/src/types/filetypes.d.ts +0 -14
  139. package/src/types/flatqueue.d.ts +0 -53
  140. package/src/types/glsl.d.ts +0 -4
  141. package/src/types/internmap.d.ts +0 -22
  142. package/src/types/object.d.ts +0 -21
  143. package/src/types/vega-loader.d.ts +0 -1
  144. package/src/types/vega-scale.d.ts +0 -60
  145. package/src/utils/addBaseUrl.js +0 -19
  146. package/src/utils/addBaseUrl.test.js +0 -22
  147. package/src/utils/animator.js +0 -83
  148. package/src/utils/arrayUtils.js +0 -61
  149. package/src/utils/binnedIndex.js +0 -167
  150. package/src/utils/binnedIndex.test.js +0 -155
  151. package/src/utils/clamp.js +0 -8
  152. package/src/utils/cloner.js +0 -34
  153. package/src/utils/cloner.test.js +0 -24
  154. package/src/utils/coalesce.js +0 -11
  155. package/src/utils/coalesce.test.js +0 -16
  156. package/src/utils/concatIterables.js +0 -26
  157. package/src/utils/concatIterables.test.js +0 -8
  158. package/src/utils/debounce.js +0 -37
  159. package/src/utils/domainArray.js +0 -216
  160. package/src/utils/domainArray.test.js +0 -130
  161. package/src/utils/eerp.js +0 -13
  162. package/src/utils/expression.js +0 -32
  163. package/src/utils/field.js +0 -28
  164. package/src/utils/formatObject.js +0 -31
  165. package/src/utils/indexer.js +0 -43
  166. package/src/utils/indexer.test.js +0 -47
  167. package/src/utils/inertia.js +0 -124
  168. package/src/utils/interactionEvent.js +0 -33
  169. package/src/utils/iterateNestedMaps.js +0 -21
  170. package/src/utils/iterateNestedMaps.test.js +0 -33
  171. package/src/utils/kWayMerge.js +0 -42
  172. package/src/utils/kWayMerge.test.js +0 -26
  173. package/src/utils/layout/flexLayout.js +0 -368
  174. package/src/utils/layout/flexLayout.test.js +0 -311
  175. package/src/utils/layout/grid.js +0 -95
  176. package/src/utils/layout/grid.test.js +0 -71
  177. package/src/utils/layout/padding.js +0 -120
  178. package/src/utils/layout/point.js +0 -23
  179. package/src/utils/layout/rectangle.js +0 -288
  180. package/src/utils/layout/rectangle.test.js +0 -172
  181. package/src/utils/mergeObjects.js +0 -99
  182. package/src/utils/mergeObjects.test.js +0 -42
  183. package/src/utils/numberExtractor.js +0 -24
  184. package/src/utils/numberExtractor.test.js +0 -6
  185. package/src/utils/point.js +0 -14
  186. package/src/utils/propertyCacher.js +0 -70
  187. package/src/utils/propertyCacher.test.js +0 -85
  188. package/src/utils/propertyCoalescer.js +0 -42
  189. package/src/utils/propertyCoalescer.test.js +0 -22
  190. package/src/utils/reservationMap.js +0 -103
  191. package/src/utils/reservationMap.test.js +0 -20
  192. package/src/utils/scaleNull.js +0 -19
  193. package/src/utils/setOperations.js +0 -75
  194. package/src/utils/smoothstep.js +0 -10
  195. package/src/utils/throttle.js +0 -34
  196. package/src/utils/topK.js +0 -76
  197. package/src/utils/topK.test.js +0 -64
  198. package/src/utils/transition.js +0 -74
  199. package/src/utils/ui/tooltip.js +0 -189
  200. package/src/utils/url.js +0 -22
  201. package/src/utils/variableTools.js +0 -24
  202. package/src/utils/variableTools.test.js +0 -13
  203. package/src/view/axisResolution.js +0 -140
  204. package/src/view/axisResolution.test.js +0 -201
  205. package/src/view/axisView.js +0 -747
  206. package/src/view/concatView.js +0 -45
  207. package/src/view/containerView.js +0 -159
  208. package/src/view/facetView.js +0 -491
  209. package/src/view/flowBuilder.js +0 -367
  210. package/src/view/flowBuilder.test.js +0 -125
  211. package/src/view/gridView.js +0 -786
  212. package/src/view/implicitRootView.js +0 -14
  213. package/src/view/importView.js +0 -19
  214. package/src/view/layerView.js +0 -74
  215. package/src/view/rendering.d.ts +0 -44
  216. package/src/view/renderingContext/compositeViewRenderingContext.js +0 -51
  217. package/src/view/renderingContext/deferredViewRenderingContext.js +0 -176
  218. package/src/view/renderingContext/layoutRecorderViewRenderingContext.js +0 -128
  219. package/src/view/renderingContext/simpleViewRenderingContext.js +0 -64
  220. package/src/view/renderingContext/svgViewRenderingContext.js +0 -125
  221. package/src/view/renderingContext/viewRenderingContext.js +0 -41
  222. package/src/view/scaleResolution.js +0 -791
  223. package/src/view/scaleResolution.test.js +0 -572
  224. package/src/view/scaleResolutionApi.d.ts +0 -40
  225. package/src/view/testUtils.js +0 -51
  226. package/src/view/title.js +0 -165
  227. package/src/view/unitView.js +0 -382
  228. package/src/view/view.js +0 -612
  229. package/src/view/view.test.js +0 -214
  230. package/src/view/viewContext.d.ts +0 -62
  231. package/src/view/viewFactory.js +0 -181
  232. package/src/view/viewFactory.test.js +0 -17
  233. package/src/view/viewUtils.js +0 -327
  234. package/src/view/zoom.js +0 -89
package/src/view/renderingContext/viewRenderingContext.js DELETED
@@ -1,41 +0,0 @@
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- /**
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- * @typedef {import("../view").default} View
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- */
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- export default class ViewRenderingContext {
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- /**
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- *
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- * @param {import("../rendering").GlobalRenderingOptions} globalOptions
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- */
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- constructor(globalOptions) {
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- this.globalOptions = globalOptions;
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- }
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-
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- /**
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- * Must be called when a view's render() method is entered
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- *
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- * @param {View} view
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- * @param {import("../../utils/layout/rectangle").default} coords View coordinates
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- * inside the padding.
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- */
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- pushView(view, coords) {
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- //
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- }
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-
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- /**
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- * Must be called when a view's render() method is being exited
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- *
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- * @param {View} view
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- */
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- popView(view) {
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- //
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- }
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-
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- /**
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- *
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- * @param {import("../../marks/mark").default} mark
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- * @param {import("../view").RenderingOptions} options
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- */
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- renderMark(mark, options) {
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- //
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- }
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- }