@genome-spy/core 0.29.0 → 0.30.2

package/src/marks/link.js

@@ -1,175 +0,0 @@
-import { drawBufferInfo, setBuffersAndAttributes, setUniforms } from "twgl.js";
-import VERTEX_SHADER from "../gl/link.vertex.glsl";
-import FRAGMENT_SHADER from "../gl/link.fragment.glsl";
-import { ConnectionVertexBuilder } from "../gl/dataToVertices";
-
-import Mark from "./mark";
-
-export default class LinkMark extends Mark {
-    /**
-     * @param {import("../view/unitView").default} unitView
-     */
-    constructor(unitView) {
-        super(unitView);
-
-        Object.defineProperties(
-            this.defaultProperties,
-            Object.getOwnPropertyDescriptors({
-                x: 0.0,
-                x2: undefined,
-                y: 0.0,
-                y2: undefined,
-                size: 1.0,
-                color: "black",
-                opacity: 1.0,
-
-                segments: 101, // Performance is affected more by the fill rate, i.e. number of pixels
-                sagittaScaleFactor: 1.0,
-                minSagittaLength: 1.5,
-            })
-        );
-    }
-
-    getAttributes() {
-        return [
-            "uniqueId",
-            "facetIndex",
-            "x",
-            "x2",
-            "y",
-            "y2",
-            "size",
-            "height",
-            "color",
-            "opacity",
-        ];
-    }
-
-    /** @return {import("../spec/channel").Channel[]} */
-    getSupportedChannels() {
-        return [...super.getSupportedChannels(), "x2", "y2", "size"];
-    }
-
-    /**
-     * @param {import("../spec/channel").Encoding} encoding
-     * @returns {import("../spec/channel").Encoding}
-     */
-    fixEncoding(encoding) {
-        if (!encoding.x) {
-            encoding.x2 = encoding.x;
-        }
-
-        if (!encoding.y2) {
-            encoding.y2 = encoding.y;
-        }
-
-        return encoding;
-    }
-
-    async initializeGraphics() {
-        await super.initializeGraphics();
-
-        this.createAndLinkShaders(VERTEX_SHADER, FRAGMENT_SHADER);
-    }
-
-    finalizeGraphicsInitialization() {
-        super.finalizeGraphicsInitialization();
-        this.gl.useProgram(this.programInfo.program);
-
-        const props = this.properties;
-
-        // TODO: Use uniform block.
-        setUniforms(this.programInfo, {
-            uSagittaScaleFactor: props.sagittaScaleFactor,
-            uMinSagittaLength: props.minSagittaLength,
-        });
-    }
-
-    updateGraphicsData() {
-        const collector = this.unitView.getCollector();
-        const itemCount = collector.getItemCount();
-
-        const builder = new ConnectionVertexBuilder({
-            encoders: this.encoders,
-            attributes: this.getAttributes(),
-            numItems: itemCount,
-        });
-
-        builder.addBatches(collector.facetBatches);
-
-        const vertexData = builder.toArrays();
-
-        vertexData.arrays.strip = {
-            data: createStrip(this.properties.segments),
-            numComponents: 2,
-        };
-
-        this.rangeMap.migrateEntries(vertexData.rangeMap);
-
-        this.arrays = Object.fromEntries(
-            Object.entries(vertexData.arrays).map(([k, v]) => [
-                k,
-                { ...v, data: undefined },
-            ])
-        );
-
-        this.updateBufferInfo(vertexData);
-    }
-
-    /**
-     * @param {import("./Mark").MarkRenderingOptions} options
-     */
-    render(options) {
-        const gl = this.gl;
-
-        // TODO: Vertical clipping in faceted view
-
-        return this.createRenderCallback((offset, count) => {
-            // We are using instanced drawing here.
-            // However, WebGL does not provide glDrawArraysInstancedBaseInstance and thus,
-            // we have to hack with offsets in vertexAttribPointer
-            // TODO: Use VAOs more intelligently to reduce WebGL calls
-            // TODO: Explore multiDrawArraysInstancedWEBGL
-            // There's also a promising extension draft:
-            // https://www.khronos.org/registry/webgl/extensions/WEBGL_draw_instanced_base_vertex_base_instance/
-            // (and https://www.khronos.org/registry/webgl/extensions/WEBGL_multi_draw_instanced_base_vertex_base_instance/)
-
-            this.gl.bindVertexArray(this.vertexArrayInfo.vertexArrayObject);
-
-            for (const attribInfoObject of Object.entries(
-                this.bufferInfo.attribs
-            )) {
-                const [attribute, attribInfo] = attribInfoObject;
-                if (
-                    attribInfo.buffer &&
-                    attribInfo.numComponents &&
-                    attribInfo.divisor
-                ) {
-                    attribInfo.offset =
-                        offset * this.arrays[attribute].numComponents * 4; // gl.FLOAT in bytes
-                }
-            }
-            setBuffersAndAttributes(gl, this.programInfo, this.bufferInfo);
-
-            drawBufferInfo(
-                gl,
-                this.bufferInfo,
-                gl.TRIANGLE_STRIP,
-                (this.properties.segments + 1) * 2, // number of vertices in a triangle strip
-                0,
-                count
-            );
-        }, options);
-    }
-}
-
-function createStrip(/** @type number */ segments) {
-    let i = 0;
-    const coords = [];
-
-    for (; i <= segments; i++) {
-        coords.push(i / segments, 0.5);
-        coords.push(i / segments, -0.5);
-    }
-    return coords;
-}