@genome-spy/core 0.29.0 → 0.30.2

package/src/scale/scale.js

@@ -1,451 +0,0 @@
-/*!
- * Adapted from vega-encode:
- * https://github.com/vega/vega/blob/master/packages/vega-encode/src/Scale.js
- *
- * Copyright (c) 2015-2018, University of Washington Interactive Data Lab
- * All rights reserved.
- *
- * BSD-3-Clause License: https://github.com/vega/vega-lite/blob/master/LICENSE
- */
-
-/* eslint-disable */
-// @ts-nocheck
-
-// This file is a mess
-// TODO: Fix types, etc.
-
-import { tickCount } from "./ticks";
-import {
-    error,
-    inherits,
-    isArray,
-    isFunction,
-    isString,
-    peek,
-    stringValue,
-    toSet,
-    zoomLinear,
-    zoomLog,
-    zoomPow,
-    zoomSymlog,
-} from "vega-util";
-
-import {
-    Ordinal,
-    Band,
-    Point,
-    Sequential,
-    Diverging,
-    Linear,
-    Log,
-    Pow,
-    Sqrt,
-    Symlog,
-    Time,
-    UTC,
-    Quantile,
-    Quantize,
-    Threshold,
-    BinOrdinal,
-    isContinuous,
-    isInterpolating,
-    isLogarithmic,
-    bandSpace,
-    interpolateColors,
-    interpolateRange,
-    interpolate as getInterpolate,
-    scale as getScale,
-    scheme as getScheme,
-    scaleImplicit,
-    quantizeInterpolator,
-} from "vega-scale";
-
-import { range as sequence } from "d3-array";
-
-import { interpolate, interpolateRound } from "d3-interpolate";
-
-const Locus = "locus";
-const Index = "index";
-
-var DEFAULT_COUNT = 5;
-
-function includeZero(scale) {
-    const type = scale.type;
-    return !scale.bins && (type === Linear || type === Pow || type === Sqrt);
-}
-
-function includePad(type) {
-    return isContinuous(type) && ![Sequential, Index, Locus].includes(type);
-}
-
-function ensureLogger(logger) {
-    return (
-        logger || {
-            warn: (msg, ...rest) => console.warn(msg, ...rest),
-        }
-    );
-}
-
-var SKIP = toSet([
-    "set",
-    "modified",
-    "clear",
-    "type",
-    "scheme",
-    "schemeExtent",
-    "schemeCount",
-    "domain",
-    "domainMin",
-    "domainMid",
-    "domainMax",
-    "domainRaw",
-    "domainImplicit",
-    "nice",
-    "zero",
-    "bins",
-    "range",
-    "rangeStep",
-    "round",
-    "reverse",
-    "interpolate",
-    "interpolateGamma",
-    "zoom",
-    "fp64",
-    "name",
-]);
-
-export function configureScale(_, scale, logger) {
-    logger = ensureLogger(logger);
-
-    for (const key in _) {
-        if (!SKIP[key]) {
-            // padding is a scale property for band/point but not others
-            if (key === "padding" && includePad(scale.type)) continue;
-            // invoke scale property setter, raise warning if not found
-            isFunction(scale[key])
-                ? scale[key](_[key])
-                : logger.warn("Unsupported scale property: " + key);
-        }
-    }
-
-    configureRange(
-        scale,
-        _,
-        configureBins(scale, _, configureDomain(scale, _, logger))
-    );
-}
-
-/**
- *
- * @param {import("../spec/scale").Scale} _
- * @param {*} logger
- * @returns {import("../encoder/encoder").VegaScale}
- */
-export default function createScale(_, logger) {
-    const key = scaleKey(_);
-    const scale = getScale(key);
-
-    if (!scale) {
-        throw new Error("Unknown scale type: " + key);
-    }
-
-    const scaleInstance = scale();
-
-    configureScale(_, scaleInstance, logger);
-
-    return scaleInstance;
-}
-
-function scaleKey(_) {
-    var t = _.type,
-        d = "",
-        n;
-
-    // backwards compatibility pre Vega 5.
-    if (t === Sequential) return Sequential + "-" + Linear;
-
-    if (isContinuousColor(_)) {
-        n = _.rawDomain
-            ? _.rawDomain.length
-            : _.domain
-            ? _.domain.length + +(_.domainMid != null)
-            : 0;
-        d = n === 2 ? Sequential + "-" : n === 3 ? Diverging + "-" : "";
-    }
-
-    return (d + t || Linear).toLowerCase();
-}
-
-function isContinuousColor(_) {
-    const t = _.type;
-    return (
-        isContinuous(t) &&
-        t !== Time &&
-        t !== UTC &&
-        (_.scheme || (_.range && _.range.length && _.range.every(isString)))
-    );
-}
-
-export function configureDomain(scale, _, logger) {
-    if (!scale.domain) {
-        return 0;
-    }
-
-    logger = ensureLogger(logger);
-
-    // check raw domain, if provided use that and exit early
-    var raw = rawDomain(scale, _.domainRaw, logger);
-    if (raw > -1) return raw;
-
-    var domain = _.domain,
-        type = scale.type,
-        zero = _.zero || (_.zero === undefined && includeZero(scale)),
-        n,
-        mid;
-
-    if (!domain) return 0;
-
-    // adjust continuous domain for minimum pixel padding
-    if (includePad(type) && _.padding && domain[0] !== peek(domain)) {
-        domain = padDomain(
-            type,
-            domain,
-            _.range,
-            _.padding,
-            _.exponent,
-            _.constant
-        );
-    }
-
-    // adjust domain based on zero, min, max settings
-    if (
-        zero ||
-        _.domainMin != null ||
-        _.domainMax != null ||
-        _.domainMid != null
-    ) {
-        n = (domain = domain.slice()).length - 1 || 1;
-        if (zero) {
-            if (domain[0] > 0) domain[0] = 0;
-            if (domain[n] < 0) domain[n] = 0;
-        }
-        if (_.domainMin != null) domain[0] = _.domainMin;
-        if (_.domainMax != null) domain[n] = _.domainMax;
-
-        if (_.domainMid != null) {
-            mid = _.domainMid;
-            if (mid < domain[0] || mid > domain[n]) {
-                logger.warn("Scale domainMid exceeds domain min or max.", mid);
-            }
-            domain.splice(n, 0, mid);
-        }
-    }
-
-    // set the scale domain
-    scale.domain(domainCheck(type, domain, logger));
-
-    // if ordinal scale domain is defined, prevent implicit
-    // domain construction as side-effect of scale lookup
-    if (type === Ordinal) {
-        scale.unknown(_.domainImplicit ? scaleImplicit : undefined);
-    }
-
-    // perform 'nice' adjustment as requested
-    if (_.nice && scale.nice) {
-        scale.nice((_.nice !== true && tickCount(scale, _.nice)) || null);
-    }
-
-    // return the cardinality of the domain
-    return domain.length;
-}
-
-function rawDomain(scale, raw, logger) {
-    if (raw) {
-        scale.domain(domainCheck(scale.type, raw, logger));
-        return raw.length;
-    } else {
-        return -1;
-    }
-}
-
-function padDomain(type, domain, range, pad, exponent, constant) {
-    var span = Math.abs(peek(range) - range[0]),
-        frac = span / (span - 2 * pad),
-        d =
-            type === Log
-                ? zoomLog(domain, null, frac)
-                : type === Sqrt
-                ? zoomPow(domain, null, frac, 0.5)
-                : type === Pow
-                ? zoomPow(domain, null, frac, exponent || 1)
-                : type === Symlog
-                ? zoomSymlog(domain, null, frac, constant || 1)
-                : zoomLinear(domain, null, frac);
-
-    domain = domain.slice();
-    domain[0] = d[0];
-    domain[domain.length - 1] = d[1];
-    return domain;
-}
-
-function domainCheck(type, domain, logger) {
-    if (isLogarithmic(type)) {
-        // sum signs of domain values
-        // if all pos or all neg, abs(sum) === domain.length
-        var s = Math.abs(
-            domain.reduce(function (s, v) {
-                return s + (v < 0 ? -1 : v > 0 ? 1 : 0);
-            }, 0)
-        );
-
-        if (s !== domain.length) {
-            logger.warn(
-                "Log scale domain includes zero: " + stringValue(domain)
-            );
-        }
-    }
-    return domain;
-}
-
-function configureBins(scale, _, count) {
-    let bins = _.bins;
-
-    if (bins && !isArray(bins)) {
-        // generate bin boundary array
-        const domain =
-                (bins.start == null || bins.stop == null) && scale.domain(),
-            start = bins.start == null ? domain[0] : bins.start,
-            stop = bins.stop == null ? peek(domain) : bins.stop,
-            step = bins.step;
-
-        if (!step) error("Scale bins parameter missing step property.");
-        bins = sequence(start, stop + step, step);
-    }
-
-    if (bins) {
-        // assign bin boundaries to scale instance
-        scale.bins = bins;
-    } else if (scale.bins) {
-        // no current bins, remove bins if previously set
-        delete scale.bins;
-    }
-
-    // special handling for bin-ordinal scales
-    if (scale.type === BinOrdinal) {
-        if (!bins) {
-            // the domain specifies the bins
-            scale.bins = scale.domain();
-        } else if (!_.domain && !_.domainRaw) {
-            // the bins specify the domain
-            scale.domain(bins);
-            count = bins.length;
-        }
-    }
-
-    // return domain cardinality
-    return count;
-}
-
-function configureRange(scale, _, count) {
-    var type = scale.type,
-        round = _.round || false,
-        range = _.range;
-
-    // if range step specified, calculate full range extent
-    if (_.rangeStep != null) {
-        range = configureRangeStep(type, _, count);
-    }
-
-    // else if a range scheme is defined, use that
-    else if (_.scheme) {
-        range = configureScheme(type, _, count);
-        if (isFunction(range)) {
-            if (scale.interpolator) {
-                return scale.interpolator(range);
-            } else {
-                error(
-                    `Scale type ${type} does not support interpolating color schemes.`
-                );
-            }
-        }
-    }
-
-    // given a range array for an interpolating scale, convert to interpolator
-    if (range && isInterpolating(type)) {
-        return scale.interpolator(
-            interpolateColors(
-                flip(range, _.reverse),
-                _.interpolate,
-                _.interpolateGamma
-            )
-        );
-    }
-
-    // configure rounding / interpolation
-    if (range && _.interpolate && scale.interpolate) {
-        scale.interpolate(getInterpolate(_.interpolate, _.interpolateGamma));
-    } else if (isFunction(scale.round)) {
-        scale.round(round);
-    } else if (isFunction(scale.rangeRound)) {
-        scale.interpolate(round ? interpolateRound : interpolate);
-    }
-
-    if (range) scale.range(flip(range, _.reverse));
-}
-
-function configureRangeStep(type, _, count) {
-    if (type !== Band && type !== Point) {
-        error("Only band and point scales support rangeStep.");
-    }
-
-    // calculate full range based on requested step size and padding
-    var outer = (_.paddingOuter != null ? _.paddingOuter : _.padding) || 0,
-        inner =
-            type === Point
-                ? 1
-                : (_.paddingInner != null ? _.paddingInner : _.padding) || 0;
-    return [0, _.rangeStep * bandSpace(count, inner, outer)];
-}
-
-function configureScheme(type, _, count) {
-    var extent = _.schemeExtent,
-        name,
-        scheme;
-
-    if (isArray(_.scheme)) {
-        scheme = interpolateColors(_.scheme, _.interpolate, _.interpolateGamma);
-    } else {
-        name = _.scheme.toLowerCase();
-        scheme = getScheme(name);
-        if (!scheme) error(`Unrecognized scheme name: ${_.scheme}`);
-    }
-
-    // determine size for potential discrete range
-    count =
-        type === Threshold
-            ? count + 1
-            : type === BinOrdinal
-            ? count - 1
-            : type === Quantile || type === Quantize
-            ? +_.schemeCount || DEFAULT_COUNT
-            : count;
-
-    // adjust and/or quantize scheme as appropriate
-    return isInterpolating(type)
-        ? adjustScheme(scheme, extent, _.reverse)
-        : isFunction(scheme)
-        ? quantizeInterpolator(adjustScheme(scheme, extent), count)
-        : type === Ordinal
-        ? scheme
-        : scheme.slice(0, count);
-}
-
-function adjustScheme(scheme, extent, reverse) {
-    return isFunction(scheme) && (extent || reverse)
-        ? interpolateRange(scheme, flip(extent || [0, 1], reverse))
-        : scheme;
-}
-
-function flip(array, reverse) {
-    return reverse ? array.slice().reverse() : array;
-}