@gen3/workspaces 0.12.63 → 0.12.64

package/scripts/build-jupyterlite_v2.sh

@@ -0,0 +1,111 @@
+#!/usr/bin/env bash
+# =============================================================================
+# build-jupyterlite.sh — Build a JupyterLite site (free or remote tier)
+#
+# Sources setup-env.sh so the venv, Python version, and tooling are identical
+# to those used by build-gen3sdk-lite.sh.
+#
+# Usage:
+#   ./build-jupyterlite.sh <tier> [build_dir]
+#     tier: 'free' or 'remote'
+# =============================================================================
+set -euo pipefail
+
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+
+usage() {
+  echo "Usage: $0 <tier> [build_dir]"
+  echo "  tier: 'free' or 'remote'"
+  exit 1
+}
+
+TIER="${1:-}"
+if [[ "$TIER" != "free" && "$TIER" != "remote" ]]; then
+  usage
+fi
+
+# ── Derive SRC_DIR before sourcing shared env ────────────────────────────────
+# setup-env.sh respects pre-set ROOT_DIR / SRC_DIR / BUILD_DIR.
+export ROOT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")/.." && pwd)"
+
+if [[ "$TIER" == "free" ]]; then
+  export SRC_DIR="$ROOT_DIR/free-private"
+else
+  export SRC_DIR="$ROOT_DIR/remote-private"
+fi
+
+# Allow caller to override BUILD_DIR via the second positional arg.
+if [[ -n "${2:-}" ]]; then
+  export BUILD_DIR="$2"
+fi
+
+# ── Source shared environment (creates/reuses the venv) ──────────────────────
+# After this: VENV_DIR, OUTPUT_DIR, BUILD_DIR, etc. are set and the venv is
+# active with the same Python version + core tooling as build-gen3sdk-lite.
+# shellcheck disable=SC1091
+source "${SCRIPT_DIR}/setup-env.sh"
+
+# ── JupyterLite-specific tooling ────────────────────────────────────────────
+CONFIG_FILE="$SRC_DIR/jupyter_lite_config.json"
+REQUIREMENTS_FILE="$SRC_DIR/requirements.txt"
+VENV_JUPYTER_LITE="$VENV_DIR/bin/jupyter-lite"
+PYPI="$OUTPUT_DIR"   # wheels built by build-gen3sdk-lite land here
+
+if [[ ! -f "$REQUIREMENTS_FILE" ]]; then
+  echo "Missing requirements file: $REQUIREMENTS_FILE"
+  exit 1
+fi
+
+# Install JupyterLite requirements into the shared venv (uv for speed).
+info "Installing JupyterLite requirements …"
+uv pip install -r "$REQUIREMENTS_FILE" 2>&1 | tail -5
+success "JupyterLite requirements installed"
+
+if [[ ! -x "$VENV_JUPYTER_LITE" ]]; then
+  echo "jupyter-lite executable not found in $VENV_DIR after dependency install."
+  exit 1
+fi
+
+# ── Build ────────────────────────────────────────────────────────────────────
+if [[ "$TIER" == "free" ]]; then
+
+  # Patch config to use the absolute pypi path so jupyter-lite can find the
+  # custom wheels built by build-gen3sdk-lite.
+  PATCHED_CONFIG="$BUILD_DIR/jupyter_lite_config.json"
+  python - <<PYEOF
+import json
+
+with open('$CONFIG_FILE') as fh:
+    cfg = json.load(fh)
+
+addon = cfg.get('PyodideLockAddon', {})
+if 'wheels' in addon:
+    addon['wheels'] = ['$PYPI/']
+    cfg['PyodideLockAddon'] = addon
+
+with open('$PATCHED_CONFIG', 'w') as fh:
+    json.dump(cfg, fh, indent=2)
+PYEOF
+
+  info "Looking for wheels in $PYPI"
+  WHEEL_ARGS=()
+  if [[ -d "$PYPI" ]]; then
+    while IFS= read -r -d '' whl; do
+      WHEEL_ARGS+=(--piplite-wheels "$whl")
+    done < <(find "$PYPI" -maxdepth 1 -name "*.whl" -print0 | sort -z)
+  fi
+
+  info "Running: jupyter-lite build (free tier, ${#WHEEL_ARGS[@]} custom wheels)"
+  "$VENV_JUPYTER_LITE" build \
+    --config "$PATCHED_CONFIG" \
+    --lite-dir "$SRC_DIR" ${WHEEL_ARGS[@]+"${WHEEL_ARGS[@]}"} \
+    --output-dir "$BUILD_DIR/$TIER"
+else
+  info "Running: jupyter-lite build (remote tier)"
+  "$VENV_JUPYTER_LITE" build \
+    --config "$CONFIG_FILE" \
+    --lite-dir "$SRC_DIR" \
+    --output-dir "$BUILD_DIR/$TIER"
+fi
+
+success "$TIER-tier JupyterLite build complete: $BUILD_DIR/$TIER"

package/dist/jupyterlite-builds/free-private/.cache/pyodide-lock/_work/constraints.txt

@@ -1,354 +0,0 @@
-affine @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/affine-2.4.0-py3-none-any.whl
-affine-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/affine-tests.tar
-aiohappyeyeballs @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/aiohappyeyeballs-2.6.1-py3-none-any.whl
-aiohttp @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/aiohttp-3.13.5-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-aiohttp-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/aiohttp-tests.tar
-aiosignal @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/aiosignal-1.4.0-py3-none-any.whl
-altair @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/altair-6.0.0-py3-none-any.whl
-annotated-doc @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/annotated_doc-0.0.4-py3-none-any.whl
-annotated-types @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/annotated_types-0.7.0-py3-none-any.whl
-annotated-types-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/annotated-types-tests.tar
-anyio @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/anyio-4.13.0-py3-none-any.whl
-apsw @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/apsw-3.51.3.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-apsw-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/apsw-tests.tar
-argon2-cffi @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/argon2_cffi-23.1.0-py3-none-any.whl
-argon2-cffi-bindings @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/argon2_cffi_bindings-25.1.0-cp314-abi3-pyemscripten_2026_0_wasm32.whl
-astropy @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/astropy-7.2.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-astropy-iers-data @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/astropy_iers_data-0.2026.4.1.15.5.49-py3-none-any.whl
-astropy-iers-data-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/astropy-iers-data-tests.tar
-asttokens @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/asttokens-3.0.1-py3-none-any.whl
-async-timeout @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/async_timeout-5.0.1-py3-none-any.whl
-atomicwrites @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/atomicwrites-1.4.1-py2.py3-none-any.whl
-attrs @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/attrs-26.1.0-py3-none-any.whl
-audioop-lts @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/audioop_lts-0.2.2-cp313-abi3-pyemscripten_2026_0_wasm32.whl
-awkward-cpp @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/awkward_cpp-52-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-b2d @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/b2d-0.7.4-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-bcrypt @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/bcrypt-5.0.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-beautifulsoup4 @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/beautifulsoup4-4.14.3-py3-none-any.whl
-bilby-cython @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/bilby_cython-0.5.4-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-bilby-cython-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/bilby-cython-tests.tar
-biopython @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/biopython-1.87-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-bitarray @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/bitarray-3.8.1-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-bitarray-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/bitarray-tests.tar
-bitstring @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/bitstring-4.4.0-py3-none-any.whl
-bleach @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/bleach-6.3.0-py3-none-any.whl
-bokeh @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/bokeh-3.9.0-py3-none-any.whl
-boost-histogram @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/boost_histogram-1.7.1-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-bottleneck @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/bottleneck-1.6.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-brotli @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/brotli-1.2.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-cachetools @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cachetools-7.0.5-py3-none-any.whl
-cartopy @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cartopy-0.25.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-cartopy-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cartopy-tests.tar
-casadi @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/casadi-3.7.2-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-cbor-diag @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cbor_diag-1.1.2-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-certifi @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/certifi-2026.4.22-py3-none-any.whl
-cffi @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cffi-2.0.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-cffi-example @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cffi_example-0.1-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-cftime @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cftime-1.6.5-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-charset-normalizer @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/charset_normalizer-3.4.7-py3-none-any.whl
-clarabel @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/clarabel-0.11.1-cp39-abi3-pyemscripten_2026_0_wasm32.whl
-click @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/click-8.3.1-py3-none-any.whl
-cligj @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cligj-0.7.2-py3-none-any.whl
-clingo @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/clingo-5.8.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-cloudpickle @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cloudpickle-3.1.2-py3-none-any.whl
-cmyt @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cmyt-2.0.2-py3-none-any.whl
-cobs @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cobs-1.2.2-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-colorspacious @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/colorspacious-1.1.2-py2.py3-none-any.whl
-contourpy @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/contourpy-1.3.3-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-coolprop @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/coolprop-7.2.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-coolprop-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/coolprop-tests.tar
-coverage @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/coverage-7.13.5-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-crc32c @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/crc32c-2.8-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-crcmod @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/crcmod-1.7-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-cryptography @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cryptography-47.0.0-cp314-abi3-pyemscripten_2026_0_wasm32.whl
-cssselect @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cssselect-1.4.0-py3-none-any.whl
-cvxpy-base @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cvxpy_base-1.8.2-py3-none-any.whl
-cvxpy-base-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cvxpy-base-tests.tar
-cycler @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cycler-0.12.1-py3-none-any.whl
-cysignals @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cysignals-1.12.3-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-cytoolz @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cytoolz-1.1.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-cytoolz-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/cytoolz-tests.tar
-decorator @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/decorator-5.2.1-py3-none-any.whl
-demes @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/demes-0.2.3-py3-none-any.whl
-deprecated @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/deprecated-1.3.1-py2.py3-none-any.whl
-deprecation @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/deprecation-2.1.0-py2.py3-none-any.whl
-diskcache @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/diskcache-5.6.3-py3-none-any.whl
-distlib @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/distlib-0.4.0-py2.py3-none-any.whl
-distro @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/distro-1.9.0-py3-none-any.whl
-dnspython @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/dnspython-2.8.0-py3-none-any.whl
-docutils @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/docutils-0.22.4-py3-none-any.whl
-donfig @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/donfig-0.8.1.post1-py3-none-any.whl
-donfig-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/donfig-tests.tar
-duckdb @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/duckdb-1.5.1-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-ewah-bool-utils @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/ewah_bool_utils-1.3.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-ewah-bool-utils-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/ewah-bool-utils-tests.tar
-exceptiongroup @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/exceptiongroup-1.3.1-py3-none-any.whl
-executing @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/executing-2.2.1-py2.py3-none-any.whl
-fastapi @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/fastapi-0.136.1-py3-none-any.whl
-fiona @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/fiona-1.10.1-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-fonttools @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/fonttools-4.62.1-py3-none-any.whl
-freesasa @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/freesasa-2.2.1-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-frozenlist @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/frozenlist-1.8.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-fsspec @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/fsspec-2026.3.0-py3-none-any.whl
-fsspec-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/fsspec-tests.tar
-future @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/future-1.0.0-py3-none-any.whl
-future-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/future-tests.tar
-galpy @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/galpy-1.11.2-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-geopandas @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/geopandas-1.1.3-py3-none-any.whl
-geopandas-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/geopandas-tests.tar
-gmpy2 @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/gmpy2-2.3.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-google-crc32c @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/google_crc32c-1.8.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-h11 @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/h11-0.16.0-py3-none-any.whl
-h3 @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/h3-4.4.2-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-h5py @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/h5py-3.13.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-h5py-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/h5py-tests.tar
-healpy @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/healpy-1.19.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-healpy-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/healpy-tests.tar
-highspy @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/highspy-1.13.1-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-html5lib @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/html5lib-1.1-py2.py3-none-any.whl
-httpcore @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/httpcore-1.0.9-py3-none-any.whl
-httpx @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/httpx-0.28.1-py3-none-any.whl
-idna @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/idna-3.11-py3-none-any.whl
-igraph @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/igraph-1.0.0-cp39-abi3-pyemscripten_2026_0_wasm32.whl
-imageio @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/imageio-2.37.3-py3-none-any.whl
-iminuit @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/iminuit-2.30.1-cp314-cp314-pyemscripten_2026_0_wasm32.whl
-iniconfig @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/iniconfig-2.3.0-py3-none-any.whl
-ipython @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/ipython-9.12.0-py3-none-any.whl
-ipython-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/ipython-tests.tar
-jedi @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/jedi-0.19.2-py2.py3-none-any.whl
-jedi-tests @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/jedi-tests.tar
-jinja2 @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/jinja2-3.1.6-py3-none-any.whl
-jiter @ https://cdn.jsdelivr.net/pyodide/v314.0.4/full/jiter-0.13.0-cp314-cp314-pyemscripten_2026_0_wasm32.whl
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package/dist/jupyterlite-builds/free-private/.cache/pyodide-lock/_work/requirements.in

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