@gen3/workspaces 0.12.63 → 0.12.64

package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/cockle_fs-0.3.0-h27506cd_2.json

@@ -0,0 +1,60 @@
+{
+    "arch": "wasm32",
+    "build": "h27506cd_2",
+    "build_number": 2,
+    "build_string": "h27506cd_2",
+    "channel": "https://repo.prefix.dev/emscripten-forge-4x",
+    "constrains": [],
+    "depends": [
+        "emscripten-abi >=4,<5.0a0"
+    ],
+    "extracted_package_dir": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/cockle_fs-0.3.0-h27506cd_2",
+    "files": [
+        "bin/fs.d.ts",
+        "bin/fs.js",
+        "bin/fs.wasm"
+    ],
+    "fn": "cockle_fs-0.3.0-h27506cd_2.tar.bz2",
+    "license": "BSD-3-Clause",
+    "link": {
+        "source": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/cockle_fs-0.3.0-h27506cd_2",
+        "type": 1
+    },
+    "md5": "e4fe36e323a7720be6631b18d6024d24",
+    "name": "cockle_fs",
+    "package_tarball_full_path": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/cockle_fs-0.3.0-h27506cd_2.tar.bz2",
+    "paths_data": {
+        "paths": [
+            {
+                "_path": "bin/fs.d.ts",
+                "path_type": "hardlink",
+                "sha256": "edb2179cd1631530f986db7388ca868d8086ba4129995cb6450e3c9f4790dd41",
+                "sha256_in_prefix": "edb2179cd1631530f986db7388ca868d8086ba4129995cb6450e3c9f4790dd41",
+                "size_in_bytes": 15066
+            },
+            {
+                "_path": "bin/fs.js",
+                "path_type": "hardlink",
+                "sha256": "3328a6991ec5289977691eac82dfc504b9f5203fe58d48159bfcbceb0fb47360",
+                "sha256_in_prefix": "3328a6991ec5289977691eac82dfc504b9f5203fe58d48159bfcbceb0fb47360",
+                "size_in_bytes": 104678
+            },
+            {
+                "_path": "bin/fs.wasm",
+                "path_type": "hardlink",
+                "sha256": "d7f7def418fd6e87dd85b358b1ef087c0a76fc4b235c8aa2f5512891d67b15b7",
+                "sha256_in_prefix": "d7f7def418fd6e87dd85b358b1ef087c0a76fc4b235c8aa2f5512891d67b15b7",
+                "size_in_bytes": 173
+            }
+        ],
+        "paths_version": 1
+    },
+    "platform": "emscripten",
+    "requested_spec": "cockle_fs",
+    "sha256": "d7f4aeb4299154e981906b1eeed875ff786659ac0f16242cfb4edd749a72b528",
+    "size": 35103,
+    "subdir": "emscripten-wasm32",
+    "timestamp": 1785179242,
+    "url": "https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/cockle_fs-0.3.0-h27506cd_2.tar.bz2",
+    "version": "0.3.0"
+}

package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/coreutils-9.10-h072c4ef_3.json

@@ -0,0 +1,52 @@
+{
+    "arch": "wasm32",
+    "build": "h072c4ef_3",
+    "build_number": 3,
+    "build_string": "h072c4ef_3",
+    "channel": "https://repo.prefix.dev/emscripten-forge-4x",
+    "constrains": [],
+    "depends": [
+        "emscripten-abi >=4,<5.0a0"
+    ],
+    "extracted_package_dir": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/coreutils-9.10-h072c4ef_3",
+    "files": [
+        "bin/coreutils.js",
+        "bin/coreutils.wasm"
+    ],
+    "fn": "coreutils-9.10-h072c4ef_3.tar.bz2",
+    "license": "GPL-3.0-only",
+    "link": {
+        "source": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/coreutils-9.10-h072c4ef_3",
+        "type": 1
+    },
+    "md5": "e596800d9d392c960b28f202a78a9778",
+    "name": "coreutils",
+    "package_tarball_full_path": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/coreutils-9.10-h072c4ef_3.tar.bz2",
+    "paths_data": {
+        "paths": [
+            {
+                "_path": "bin/coreutils.js",
+                "path_type": "hardlink",
+                "sha256": "e40c3a8e8673550544c8f6f856063f8e9c40bcd45b5ea8a857100f7d88050705",
+                "sha256_in_prefix": "e40c3a8e8673550544c8f6f856063f8e9c40bcd45b5ea8a857100f7d88050705",
+                "size_in_bytes": 168774
+            },
+            {
+                "_path": "bin/coreutils.wasm",
+                "path_type": "hardlink",
+                "sha256": "7c5de595f82d6d81759ad87ee9ea77924184905740dc78dd1418145048da43e6",
+                "sha256_in_prefix": "7c5de595f82d6d81759ad87ee9ea77924184905740dc78dd1418145048da43e6",
+                "size_in_bytes": 1200495
+            }
+        ],
+        "paths_version": 1
+    },
+    "platform": "emscripten",
+    "requested_spec": "coreutils",
+    "sha256": "f8cebab6005b1e083899b48abe8904484664521315f5671689ca4c8fa735acf9",
+    "size": 595703,
+    "subdir": "emscripten-wasm32",
+    "timestamp": 1785222124,
+    "url": "https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/coreutils-9.10-h072c4ef_3.tar.bz2",
+    "version": "9.10"
+}

package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/emscripten-abi-4.0.9-h267e887_9.json

@@ -0,0 +1,31 @@
+{
+    "build": "h267e887_9",
+    "build_number": 9,
+    "build_string": "h267e887_9",
+    "channel": "https://repo.prefix.dev/emscripten-forge-4x",
+    "constrains": [],
+    "depends": [],
+    "extracted_package_dir": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/noarch/emscripten-abi-4.0.9-h267e887_9",
+    "files": [],
+    "fn": "emscripten-abi-4.0.9-h267e887_9.tar.bz2",
+    "license": "MIT",
+    "link": {
+        "source": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/noarch/emscripten-abi-4.0.9-h267e887_9",
+        "type": 1
+    },
+    "md5": "25efc842dad2785871310cfa3499ca33",
+    "name": "emscripten-abi",
+    "noarch": "generic",
+    "package_tarball_full_path": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/noarch/emscripten-abi-4.0.9-h267e887_9.tar.bz2",
+    "paths_data": {
+        "paths": [],
+        "paths_version": 1
+    },
+    "requested_spec": "",
+    "sha256": "0dd4620a5b4f2ec7d492b4162afd609eda221ef066bac3e7fe9210ae27a37318",
+    "size": 13443,
+    "subdir": "noarch",
+    "timestamp": 1785158713,
+    "url": "https://repo.prefix.dev/emscripten-forge-4x/noarch/emscripten-abi-4.0.9-h267e887_9.tar.bz2",
+    "version": "4.0.9"
+}

package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/grep-3.12-h8b79025_0.json

@@ -0,0 +1,52 @@
+{
+    "arch": "wasm32",
+    "build": "h8b79025_0",
+    "build_number": 0,
+    "build_string": "h8b79025_0",
+    "channel": "https://repo.prefix.dev/emscripten-forge-4x",
+    "constrains": [],
+    "depends": [
+        "emscripten-abi >=4,<5.0a0"
+    ],
+    "extracted_package_dir": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/grep-3.12-h8b79025_0",
+    "files": [
+        "bin/grep.js",
+        "bin/grep.wasm"
+    ],
+    "fn": "grep-3.12-h8b79025_0.tar.bz2",
+    "license": "GPL-3.0-only",
+    "link": {
+        "source": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/grep-3.12-h8b79025_0",
+        "type": 1
+    },
+    "md5": "c986cfcd0113c263e7af7f78ee7c6900",
+    "name": "grep",
+    "package_tarball_full_path": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/grep-3.12-h8b79025_0.tar.bz2",
+    "paths_data": {
+        "paths": [
+            {
+                "_path": "bin/grep.js",
+                "path_type": "hardlink",
+                "sha256": "8d410527428b2df6ba97c956320cc2e6c4c0b08b4f47556e198e6b732dc0e3d5",
+                "sha256_in_prefix": "8d410527428b2df6ba97c956320cc2e6c4c0b08b4f47556e198e6b732dc0e3d5",
+                "size_in_bytes": 119651
+            },
+            {
+                "_path": "bin/grep.wasm",
+                "path_type": "hardlink",
+                "sha256": "7aa8a089a79262dcf76ca6da849c275df19faae0c0a6a962569524c95e0f0673",
+                "sha256_in_prefix": "7aa8a089a79262dcf76ca6da849c275df19faae0c0a6a962569524c95e0f0673",
+                "size_in_bytes": 232142
+            }
+        ],
+        "paths_version": 1
+    },
+    "platform": "emscripten",
+    "requested_spec": "grep",
+    "sha256": "8e881fda5c698247d53cf62ebebb644d28ab0b8db5352f4a2b56d1f7b85a5a69",
+    "size": 137361,
+    "subdir": "emscripten-wasm32",
+    "timestamp": 1762793085,
+    "url": "https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/grep-3.12-h8b79025_0.tar.bz2",
+    "version": "3.12"
+}

package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/history

@@ -0,0 +1,10 @@
+==> 2026-08-26 09:09:47 <==
+# cmd: micromamba create -p ./cockle_wasm_env -y cockle_fs coreutils grep less sed --platform=emscripten-wasm32 -c https://repo.prefix.dev/emscripten-forge-4x -c conda-forge
+# conda version: 3.8.0
++https://repo.prefix.dev/emscripten-forge-4x/noarch::emscripten-abi-4.0.9-h267e887_9
++https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32::less-693-hf259948_0
++https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32::grep-3.12-h8b79025_0
++https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32::coreutils-9.10-h072c4ef_3
++https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32::cockle_fs-0.3.0-h27506cd_2
++https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32::sed-4.9-h072c4ef_0
+# update specs: ["cockle_fs", "coreutils", "grep", "less", "sed"]

package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/less-693-hf259948_0.json

@@ -0,0 +1,60 @@
+{
+    "arch": "wasm32",
+    "build": "hf259948_0",
+    "build_number": 0,
+    "build_string": "hf259948_0",
+    "channel": "https://repo.prefix.dev/emscripten-forge-4x",
+    "constrains": [],
+    "depends": [
+        "emscripten-abi >=4,<5.0a0"
+    ],
+    "extracted_package_dir": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/less-693-hf259948_0",
+    "files": [
+        "bin/less.data",
+        "bin/less.js",
+        "bin/less.wasm"
+    ],
+    "fn": "less-693-hf259948_0.tar.bz2",
+    "license": "GPL-3.0-only",
+    "link": {
+        "source": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/less-693-hf259948_0",
+        "type": 1
+    },
+    "md5": "3a5e102905f01a7fa8522620d51f903c",
+    "name": "less",
+    "package_tarball_full_path": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/less-693-hf259948_0.tar.bz2",
+    "paths_data": {
+        "paths": [
+            {
+                "_path": "bin/less.data",
+                "path_type": "hardlink",
+                "sha256": "8e277e436a88e4b45e697fbf58acc665faa0a6dd64746b7c7819ac4c95471431",
+                "sha256_in_prefix": "8e277e436a88e4b45e697fbf58acc665faa0a6dd64746b7c7819ac4c95471431",
+                "size_in_bytes": 7106
+            },
+            {
+                "_path": "bin/less.js",
+                "path_type": "hardlink",
+                "sha256": "caad962f94775dddaccb6bfeeb05369cce930be35199f4225ba793e5ec42bc5f",
+                "sha256_in_prefix": "caad962f94775dddaccb6bfeeb05369cce930be35199f4225ba793e5ec42bc5f",
+                "size_in_bytes": 162151
+            },
+            {
+                "_path": "bin/less.wasm",
+                "path_type": "hardlink",
+                "sha256": "421cbac47d1dd1224884afb034d12a7cfc04145bf83e657bd7ed573497805f93",
+                "sha256_in_prefix": "3b8f4ee6443fbaa30a3d9eb0b8fd61ac2ae51dfe343cb4ca77eda9a3a47bf246",
+                "size_in_bytes": 591447
+            }
+        ],
+        "paths_version": 1
+    },
+    "platform": "emscripten",
+    "requested_spec": "less",
+    "sha256": "2c0e881e382690e6005582dc7af91d032656b4ba473f3a1aa19871bf92b00988",
+    "size": 263073,
+    "subdir": "emscripten-wasm32",
+    "timestamp": 1776392086,
+    "url": "https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/less-693-hf259948_0.tar.bz2",
+    "version": "693"
+}

package/jupyterlite-builds/free-private/cockle_wasm_env/conda-meta/sed-4.9-h072c4ef_0.json

@@ -0,0 +1,52 @@
+{
+    "arch": "wasm32",
+    "build": "h072c4ef_0",
+    "build_number": 0,
+    "build_string": "h072c4ef_0",
+    "channel": "https://repo.prefix.dev/emscripten-forge-4x",
+    "constrains": [],
+    "depends": [
+        "emscripten-abi >=4,<5.0a0"
+    ],
+    "extracted_package_dir": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/sed-4.9-h072c4ef_0",
+    "files": [
+        "bin/sed.js",
+        "bin/sed.wasm"
+    ],
+    "fn": "sed-4.9-h072c4ef_0.tar.bz2",
+    "license": "GPL-3.0-only",
+    "link": {
+        "source": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/sed-4.9-h072c4ef_0",
+        "type": 1
+    },
+    "md5": "c5401a4d0cc1ce4ee3661d3a9f706d92",
+    "name": "sed",
+    "package_tarball_full_path": "/opt/homebrew/Cellar/micromamba/2.8.1/pkgs/https/repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/sed-4.9-h072c4ef_0.tar.bz2",
+    "paths_data": {
+        "paths": [
+            {
+                "_path": "bin/sed.js",
+                "path_type": "hardlink",
+                "sha256": "24012575c22ec3582f49e94fcfe88d0b6c86d76a2c0c8503c3f32fc6c357d013",
+                "sha256_in_prefix": "24012575c22ec3582f49e94fcfe88d0b6c86d76a2c0c8503c3f32fc6c357d013",
+                "size_in_bytes": 119635
+            },
+            {
+                "_path": "bin/sed.wasm",
+                "path_type": "hardlink",
+                "sha256": "98724b4372db101dd2cc0a30c7245b65b8d1da81e918096b009b3c1981b2a097",
+                "sha256_in_prefix": "98724b4372db101dd2cc0a30c7245b65b8d1da81e918096b009b3c1981b2a097",
+                "size_in_bytes": 147031
+            }
+        ],
+        "paths_version": 1
+    },
+    "platform": "emscripten",
+    "requested_spec": "sed",
+    "sha256": "46a0817cc57f48656f1729ba57c1a70699be3cc51bb652c16b09be58103303e3",
+    "size": 112834,
+    "subdir": "emscripten-wasm32",
+    "timestamp": 1762865278,
+    "url": "https://repo.prefix.dev/emscripten-forge-4x/emscripten-wasm32/sed-4.9-h072c4ef_0.tar.bz2",
+    "version": "4.9"
+}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@gen3/workspaces",
-  "version": "0.12.63",
+  "version": "0.12.64",
   "description": "Workspaces for Gen3",
   "license": "Apache-2.0",
   "sideEffects": false,
@@ -52,8 +52,8 @@
     "./jupyterlite-builds/*": "./dist/jupyterlite-builds/*"
   },
   "dependencies": {
-    "@gen3/core": "^0.12.63",
-    "@gen3/frontend": "^0.12.63",
+    "@gen3/core": "^0.12.64",
+    "@gen3/frontend": "^0.12.64",
     "camelcase-keys": "^10.0.2"
   },
   "peerDependencies": {

package/scripts/build-gen3sdk-lite_v2.sh

@@ -0,0 +1,310 @@
+#!/usr/bin/env bash
+# =============================================================================
+# build-gen3sdk-lite.sh — Build Gen3 SDK and dependencies as WASM wheels
+#
+# Prerequisites:
+#   - uv  (https://docs.astral.sh/uv/getting-started/installation/)
+#   - git
+#   - cmake, make, and a C compiler (for emsdk bootstrap)
+#
+# Usage:
+#   ./build-gen3sdk-lite.sh            # full build (setup + all packages)
+#   ./build-gen3sdk-lite.sh --setup    # environment setup only
+#   ./build-gen3sdk-lite.sh --build    # build wheels only (assumes setup done)
+#   ./build-gen3sdk-lite.sh --clean    # remove cloned repos, build artifacts
+# =============================================================================
+set -euo pipefail
+
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+
+# ── Configuration ────────────────────────────────────────────────────────────
+# Repositories to build (order matters — independent packages first)
+# Format: "name|git_url|subdir"  (subdir is optional)
+REPOS=(
+  "cdislogging|https://github.com/uc-cdis/cdislogging.git"
+  "python-json-logger|https://github.com/nhairs/python-json-logger.git"
+  "fastavro|https://github.com/fastavro/fastavro.git"
+  "drsclient|https://github.com/uc-cdis/drsclient.git"
+  "indexd|https://github.com/uc-cdis/indexd.git|indexclient"
+  "dictionaryutils|https://github.com/uc-cdis/dictionaryutils.git"
+  "pypfb|https://github.com/uc-cdis/pypfb.git"
+  "gen3sdk-python|https://github.com/uc-cdis/gen3sdk-python.git"
+  "gen3users|git@github.com:uc-cdis/gen3users.git"
+)
+
+# ── Source shared environment ────────────────────────────────────────────────
+# setup-env.sh exports: ROOT_DIR, SRC_DIR, BUILD_DIR, VENV_DIR, WORK_DIR,
+# EMSDK_DIR, SOURCES_DIR, OUTPUT_DIR, LOG_DIR and helper functions.
+# It also creates + activates the venv and installs core tooling.
+source_shared_env() {
+  # shellcheck disable=SC1091
+  source "${SCRIPT_DIR}/setup-env.sh"
+}
+
+# ── Emscripten SDK ───────────────────────────────────────────────────────────
+setup_emsdk() {
+  info "Setting up Emscripten SDK …"
+
+  if [[ ! -d "${EMSDK_DIR}" ]]; then
+    git clone https://github.com/emscripten-core/emsdk.git "${EMSDK_DIR}"
+  fi
+
+  local em_version
+  em_version="$(pyodide config get emscripten_version)"
+  info "Pyodide requires Emscripten ${em_version}"
+
+  pushd "${EMSDK_DIR}" > /dev/null
+  ./emsdk install "${em_version}"
+  ./emsdk activate "${em_version}"
+  # shellcheck disable=SC1091
+  source emsdk_env.sh
+  popd > /dev/null
+
+  success "Emscripten $(emcc --version | head -1) activated"
+}
+
+# ── Full environment setup ───────────────────────────────────────────────────
+setup_environment() {
+  source_shared_env
+  mkdir -p "${WORK_DIR}" "${SOURCES_DIR}" "${OUTPUT_DIR}" "${LOG_DIR}"
+
+  # WASM-specific tooling (on top of the shared base)
+  info "Installing pyodide-build …"
+  uv pip install pyodide-build 2>&1 | tail -3
+  success "pyodide-build $(pyodide --version 2>/dev/null || echo '(installed)')"
+
+  setup_emsdk
+}
+
+# ── Clone / update sources ──────────────────────────────────────────────────
+clone_repos() {
+  info "Cloning / updating repositories …"
+  for entry in "${REPOS[@]}"; do
+    IFS='|' read -r name url _subdir <<< "${entry}"
+    local dest="${SOURCES_DIR}/${name}"
+    if [[ -d "${dest}/.git" ]]; then
+      info "  ${name}: pulling latest …"
+      git -C "${dest}" pull --ff-only 2>&1 | tail -1
+    else
+      info "  ${name}: cloning …"
+      git clone "${url}" "${dest}" 2>&1 | tail -1
+    fi
+  done
+  success "All repositories ready"
+}
+
+# ── Build WASM wheels ───────────────────────────────────────────────────────
+build_wheels() {
+  # Make sure emsdk env is active in this shell
+  if [[ -f "${EMSDK_DIR}/emsdk_env.sh" ]]; then
+    # shellcheck disable=SC1091
+    source "${EMSDK_DIR}/emsdk_env.sh" 2>/dev/null
+  fi
+  # shellcheck disable=SC1091
+  source "${VENV_DIR}/bin/activate"
+
+  local total=${#REPOS[@]}
+  local built=0
+  local failed=0
+  local failed_names=()
+
+  # ── Source patches ─────────────────────────────────────────────────────
+
+  # gen3users: old poetry.masonry.api → poetry.core.masonry.api
+  local gen3users_pyproject="${SOURCES_DIR}/gen3users/pyproject.toml"
+  if [[ -f "${gen3users_pyproject}" ]]; then
+    sed -i '' 's|build-backend = "poetry.masonry.api"|build-backend = "poetry.core.masonry.api"|' "${gen3users_pyproject}"
+    info "Patched gen3users: build-backend updated to poetry.core.masonry.api"
+  fi
+
+  # gen3sdk-python: relax indexclient pin
+  local gen3sdk_pyproject="${SOURCES_DIR}/gen3sdk-python/pyproject.toml"
+  if [[ -f "${gen3sdk_pyproject}" ]]; then
+    sed -i '' 's/indexclient = "\^2\.3\.0"/indexclient = ">=2.3.0"/' "${gen3sdk_pyproject}"
+    info "Patched gen3sdk-python: indexclient constraint relaxed to >=2.3.0"
+  fi
+
+  # dictionaryutils: relax jsonschema pin
+  local dictionaryutils_pyproject="${SOURCES_DIR}/dictionaryutils/pyproject.toml"
+  if [[ -f "${dictionaryutils_pyproject}" ]]; then
+    sed -i '' 's/jsonschema = "<=4\.23\.0"/jsonschema = ">=4.0.0"/' "${dictionaryutils_pyproject}"
+    info "Patched dictionaryutils: jsonschema constraint relaxed to >=4.0.0"
+  fi
+
+  # psqlgraph: multiple fixes for WASM compatibility
+  local psqlgraph_pyproject="${SOURCES_DIR}/psqlgraph/pyproject.toml"
+  if [[ -f "${psqlgraph_pyproject}" ]]; then
+    sed -i '' 's/"sqlalchemy~=1\.4"/"sqlalchemy>=1.4"/' "${psqlgraph_pyproject}"
+    sed -i '' 's/, "versionista>=1\.1\.0"//' "${psqlgraph_pyproject}"
+    sed -i '' 's/local_scheme = "versionista-local-format"/local_scheme = "no-local-version"/' "${psqlgraph_pyproject}"
+    sed -i '' 's/version_scheme = "versionista-format"/version_scheme = "guess-next-dev"/' "${psqlgraph_pyproject}"
+    sed -i '' '/"psycopg2"/d' "${psqlgraph_pyproject}"
+    sed -i '' '/"xlocal"/d' "${psqlgraph_pyproject}"
+    info "Patched psqlgraph: sqlalchemy >=1.4, removed versionista + psycopg2 + xlocal"
+
+    local psql_py="${SOURCES_DIR}/psqlgraph/src/psqlgraph/psql.py"
+    if [[ -f "${psql_py}" ]]; then
+      python3 - "${psql_py}" <<'PYEOF'
+import sys, re
+
+path = sys.argv[1]
+text = open(path).read()
+stub = '''\
+try:
+    import xlocal
+except ImportError:
+    class _XLocalInst:
+        class _Ctx:
+            def __init__(self, parent, **kw):
+                self._parent, self._kw = parent, kw
+            def __enter__(self):
+                for k, v in self._kw.items():
+                    setattr(self._parent, k, v)
+                return self._parent
+            def __exit__(self, *a):
+                for k in self._kw:
+                    self._parent.__dict__.pop(k, None)
+        def __call__(self, **kw):
+            return self._Ctx(self, **kw)
+    class _xlocal_module:
+        xlocal = _XLocalInst
+    xlocal = _xlocal_module()'''
+text = re.sub(r'^import xlocal$', stub, text, flags=re.MULTILINE)
+open(path, 'w').write(text)
+PYEOF
+      info "Patched psqlgraph/psql.py: xlocal import wrapped in try/except stub"
+    fi
+  fi
+
+  # ── Build loop ─────────────────────────────────────────────────────────
+  info "Building ${total} packages …"
+  echo ""
+
+  for entry in "${REPOS[@]}"; do
+    IFS='|' read -r name _url subdir <<< "${entry}"
+    local src="${SOURCES_DIR}/${name}"
+    local build_dir="${src}"
+    [[ -n "${subdir}" ]] && build_dir="${src}/${subdir}"
+    local logfile="${LOG_DIR}/${name}.log"
+    local start_ts
+    start_ts=$(date +%s)
+
+    local label="${name}"
+    [[ -n "${subdir}" ]] && label="${name}/${subdir}"
+    printf "  [%d/%d] %-25s " $((built + failed + 1)) "${total}" "${label}"
+
+    if (cd "${build_dir}" && pyodide build) > "${logfile}" 2>&1; then
+      local end_ts
+      end_ts=$(date +%s)
+      echo -e "${GREEN}OK${NC}  ($(elapsed $((end_ts - start_ts))))"
+      ((built++))
+    else
+      local end_ts
+      end_ts=$(date +%s)
+      echo -e "${RED}FAILED${NC}  ($(elapsed $((end_ts - start_ts)))) — see ${logfile}"
+      ((failed++))
+      failed_names+=("${name}")
+    fi
+  done
+
+  echo ""
+
+  # ── Collect wheels ─────────────────────────────────────────────────────
+  info "Collecting .whl files into ${OUTPUT_DIR} …"
+  local count=0
+  for entry in "${REPOS[@]}"; do
+    IFS='|' read -r name _url subdir <<< "${entry}"
+    local src="${SOURCES_DIR}/${name}"
+    local build_dir="${src}"
+    [[ -n "${subdir}" ]] && build_dir="${src}/${subdir}"
+    if compgen -G "${build_dir}/dist/*.whl" > /dev/null 2>&1; then
+      cp "${build_dir}"/dist/*.whl "${OUTPUT_DIR}/"
+      ((count += $(ls -1 "${build_dir}"/dist/*.whl 2>/dev/null | wc -l)))
+    fi
+  done
+
+  # ── Normalise platform tags ────────────────────────────────────────────
+  for whl in "${OUTPUT_DIR}"/*p313-cp313-pyemscripten_2025_0_wasm32.whl; do
+    [[ -f "${whl}" ]] || continue
+    new_whl="${whl/p313-cp313-pyemscripten_2025_0_wasm32/py3-none-any}"
+    mv "${whl}" "${new_whl}"
+    info "Renamed $(basename "${whl}") → $(basename "${new_whl}")"
+  done
+
+  # ── Summary ────────────────────────────────────────────────────────────
+  echo ""
+  echo "========================================="
+  echo "  Build Summary"
+  echo "========================================="
+  echo "  Succeeded : ${built}"
+  echo "  Failed    : ${failed}"
+  echo "  Wheels    : ${count} file(s) in ${OUTPUT_DIR}/"
+  if (( failed > 0 )); then
+    echo ""
+    echo "  Failed packages:"
+    for n in "${failed_names[@]}"; do
+      echo "    - ${n}  (log: ${LOG_DIR}/${n}.log)"
+    done
+  fi
+  echo "========================================="
+  echo ""
+
+  if (( failed > 0 )); then
+    warn "Some packages failed. Check the logs above."
+    return 1
+  fi
+
+  success "All wheels built and collected in ${OUTPUT_DIR}/"
+  echo ""
+  ls -lh "${OUTPUT_DIR}"/*.whl
+}
+
+# ── Clean ────────────────────────────────────────────────────────────────────
+clean() {
+  # Need the path variables but don't need the full env setup
+  ROOT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")/.." && pwd)"
+  SRC_DIR="$ROOT_DIR/free-private"
+  BUILD_DIR="${2:-$SRC_DIR/build}"
+  WORK_DIR="$BUILD_DIR/work"
+  OUTPUT_DIR="$BUILD_DIR/pypi"
+  LOG_DIR="$BUILD_DIR/logs"
+
+  echo -e '\033[0;36m[INFO]\033[0m  Cleaning build artifacts …'
+  rm -rf "${WORK_DIR}" "${OUTPUT_DIR}" "${LOG_DIR}"
+  echo -e '\033[0;32m[OK]\033[0m    Clean complete'
+}
+
+# ── Main ─────────────────────────────────────────────────────────────────────
+main() {
+  local mode="${1:-all}"
+
+  case "${mode}" in
+    --setup)
+      setup_environment
+      ;;
+    --build)
+      source_shared_env
+      clone_repos
+      build_wheels
+      ;;
+    --clean)
+      clean
+      ;;
+    --help|-h)
+      echo "Usage: $0 [--setup | --build | --clean | --help]"
+      echo ""
+      echo "  (no flag)   Full run: setup environment, clone repos, build wheels"
+      echo "  --setup     Set up Python, venv, pyodide-build, and emsdk"
+      echo "  --build     Clone/update repos and build WASM wheels (requires prior --setup)"
+      echo "  --clean     Remove work/, dist/, and logs/"
+      echo "  --help      Show this message"
+      ;;
+    *)
+      setup_environment
+      clone_repos
+      build_wheels
+      ;;
+  esac
+}
+
+main "$@"