@gen-epix/ui 1.15.1 → 1.16.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/environment.d.ts +54 -0
- package/dist/index.d.ts +16090 -0
- package/dist/index.js +125 -106
- package/dist/index.js.map +1 -0
- package/package.json +14 -16
- package/src/@types/environment.d.ts +0 -54
- package/src/api/api.ts +0 -43576
- package/src/api/base.ts +0 -111
- package/src/api/common.ts +0 -168
- package/src/api/configuration.ts +0 -118
- package/src/api/index.ts +0 -20
- package/src/assets/icons/CollectionIcon.svg +0 -1
- package/src/assets/icons/DnaIcon.svg +0 -1
- package/src/assets/icons/VirusIcon.svg +0 -1
- package/src/assets/logo/logo-rijksoverheid.svg +0 -42
- package/src/assets/logo/logo-rivm.svg +0 -6
- package/src/classes/Subject/Subject.ts +0 -26
- package/src/classes/Subject/index.ts +0 -1
- package/src/classes/TableEventBus/TableEventBus.ts +0 -14
- package/src/classes/TableEventBus/index.ts +0 -1
- package/src/classes/abstracts/EventBusAbstract/EventBusAbstract.ts +0 -37
- package/src/classes/abstracts/EventBusAbstract/index.ts +0 -1
- package/src/classes/abstracts/FilterAbstract/FilterAbstract.ts +0 -54
- package/src/classes/abstracts/FilterAbstract/index.ts +0 -1
- package/src/classes/abstracts/SubscribableAbstract/SubscribableAbstract.ts +0 -20
- package/src/classes/abstracts/SubscribableAbstract/index.ts +0 -1
- package/src/classes/errors/UploadError.ts +0 -11
- package/src/classes/errors/index.ts +0 -1
- package/src/classes/filters/BooleanFilter.ts +0 -31
- package/src/classes/filters/DateFilter.ts +0 -133
- package/src/classes/filters/GeoFilter.ts +0 -60
- package/src/classes/filters/MultiSelectFilter.ts +0 -70
- package/src/classes/filters/NumberRangeFilter.ts +0 -82
- package/src/classes/filters/SelectionFilter.ts +0 -25
- package/src/classes/filters/TextFilter.ts +0 -36
- package/src/classes/filters/TreeFilter.ts +0 -22
- package/src/classes/managers/AuthenticationManager/AuthenticationManager.ts +0 -94
- package/src/classes/managers/AuthenticationManager/index.ts +0 -1
- package/src/classes/managers/AuthorizationManager/AuthorizationManager.ts +0 -70
- package/src/classes/managers/AuthorizationManager/index.ts +0 -1
- package/src/classes/managers/BackendVersionManager/BackendVersionManager.ts +0 -23
- package/src/classes/managers/BackendVersionManager/index.ts +0 -1
- package/src/classes/managers/BreadcrumbManager/BreadcrumbManager.ts +0 -30
- package/src/classes/managers/BreadcrumbManager/index.ts +0 -1
- package/src/classes/managers/ConfigManager/ConfigManager.ts +0 -31
- package/src/classes/managers/ConfigManager/index.ts +0 -1
- package/src/classes/managers/DevicePixelRatioManager/DevicePixelRatioManager.ts +0 -27
- package/src/classes/managers/DevicePixelRatioManager/index.ts +0 -1
- package/src/classes/managers/EmotionCacheManager/EmotionCacheManager.ts +0 -27
- package/src/classes/managers/EmotionCacheManager/index.ts +0 -1
- package/src/classes/managers/EpiDataManager/EpiDataManager.ts +0 -196
- package/src/classes/managers/EpiDataManager/index.ts +0 -1
- package/src/classes/managers/EpiEventBusManager/EpiEventBusManager.ts +0 -61
- package/src/classes/managers/EpiEventBusManager/index.ts +0 -1
- package/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.ts +0 -32
- package/src/classes/managers/EpiHighlightingManager/index.ts +0 -1
- package/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.ts +0 -118
- package/src/classes/managers/EpiLineListCaseSetMembersManager/index.ts +0 -1
- package/src/classes/managers/FeatureFlagsManager/FeatureFlagsManager.ts +0 -30
- package/src/classes/managers/FeatureFlagsManager/index.ts +0 -1
- package/src/classes/managers/I18nManager/I18nManager.ts +0 -105
- package/src/classes/managers/I18nManager/index.ts +0 -1
- package/src/classes/managers/InactivityManager/InactivityManager.ts +0 -119
- package/src/classes/managers/InactivityManager/index.ts +0 -1
- package/src/classes/managers/KeyboardShortcutManager/KeyboardShortcutManager.ts +0 -78
- package/src/classes/managers/KeyboardShortcutManager/index.ts +0 -1
- package/src/classes/managers/LogManager/LogManager.ts +0 -151
- package/src/classes/managers/LogManager/index.ts +0 -1
- package/src/classes/managers/NavigationHistoryManager/NavigationHistoryManager.ts +0 -16
- package/src/classes/managers/NavigationHistoryManager/index.ts +0 -1
- package/src/classes/managers/NotificationManager/NotificationManager.ts +0 -104
- package/src/classes/managers/NotificationManager/index.ts +0 -1
- package/src/classes/managers/PageEventBusManager/PageEventBusManager.ts +0 -116
- package/src/classes/managers/PageEventBusManager/index.ts +0 -1
- package/src/classes/managers/QueryClientManager/QueryClientManager.ts +0 -51
- package/src/classes/managers/QueryClientManager/index.ts +0 -1
- package/src/classes/managers/RouterManager/RouterManager.ts +0 -25
- package/src/classes/managers/RouterManager/index.ts +0 -1
- package/src/classes/managers/UserSettingsManager/UserSettingsManager.ts +0 -16
- package/src/classes/managers/UserSettingsManager/index.ts +0 -1
- package/src/classes/managers/WindowManager/WindowManager.test.ts +0 -23
- package/src/classes/managers/WindowManager/WindowManager.ts +0 -26
- package/src/classes/managers/WindowManager/index.ts +0 -1
- package/src/components/app/App/App.tsx +0 -58
- package/src/components/app/App/index.ts +0 -1
- package/src/components/app/ApplicationBootstrap/ApplicationBootstrap.tsx +0 -223
- package/src/components/app/ApplicationBootstrap/index.ts +0 -1
- package/src/components/app/RouterRoot/RouterRoot.tsx +0 -187
- package/src/components/app/RouterRoot/index.ts +0 -1
- package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.tsx +0 -347
- package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.tsx +0 -38
- package/src/components/epi/EpiAddCasesToEventDialog/index.ts +0 -1
- package/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.tsx +0 -61
- package/src/components/epi/EpiBulkEditCaseDialog/index.ts +0 -1
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.tsx +0 -137
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.tsx +0 -127
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.tsx +0 -111
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.tsx +0 -377
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.tsx +0 -140
- package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.tsx +0 -23
- package/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.tsx +0 -89
- package/src/components/epi/EpiCaseInfoDialog/index.ts +0 -1
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.tsx +0 -108
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.tsx +0 -34
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.tsx +0 -151
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.tsx +0 -389
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.tsx +0 -155
- package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.tsx +0 -23
- package/src/components/epi/EpiCaseSetInfoDialog/index.ts +0 -1
- package/src/components/epi/EpiCaseSummary/EpiCaseSummary.tsx +0 -141
- package/src/components/epi/EpiCaseSummary/index.ts +0 -1
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.tsx +0 -91
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.tsx +0 -118
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.tsx +0 -38
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.tsx +0 -39
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.tsx +0 -169
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.tsx +0 -42
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.tsx +0 -87
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.tsx +0 -73
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.tsx +0 -61
- package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.tsx +0 -151
- package/src/components/epi/EpiCaseTypeInfoDialog/index.ts +0 -10
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.tsx +0 -190
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.tsx +0 -62
- package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.ts +0 -1
- package/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.tsx +0 -87
- package/src/components/epi/EpiCompletCaseTypeLoader/index.ts +0 -1
- package/src/components/epi/EpiContactDetailsDialog/EpiContactDetailsDialog.tsx +0 -151
- package/src/components/epi/EpiContactDetailsDialog/index.ts +0 -1
- package/src/components/epi/EpiContextMenu/EpiContextMenu.tsx +0 -155
- package/src/components/epi/EpiContextMenu/index.ts +0 -1
- package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.tsx +0 -386
- package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.tsx +0 -30
- package/src/components/epi/EpiCreateEventDialog/index.ts +0 -1
- package/src/components/epi/EpiCurve/EpiCurve.tsx +0 -525
- package/src/components/epi/EpiCurve/index.ts +0 -1
- package/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.tsx +0 -27
- package/src/components/epi/EpiCustomTabPanel/index.ts +0 -1
- package/src/components/epi/EpiDashboard/EpiDashboard.tsx +0 -390
- package/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.tsx +0 -154
- package/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.tsx +0 -89
- package/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.tsx +0 -248
- package/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.tsx +0 -160
- package/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.tsx +0 -93
- package/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.tsx +0 -90
- package/src/components/epi/EpiDashboard/index.ts +0 -1
- package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.tsx +0 -34
- package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.tsx +0 -73
- package/src/components/epi/EpiDashboardStoreLoader/index.ts +0 -2
- package/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.tsx +0 -19
- package/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.tsx +0 -88
- package/src/components/epi/EpiDataCollectionAccessInfo/index.ts +0 -1
- package/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.tsx +0 -302
- package/src/components/epi/EpiFindSimilarCasesDialog/index.ts +0 -1
- package/src/components/epi/EpiLegendaItem/EpiLegendaItem.tsx +0 -106
- package/src/components/epi/EpiLegendaItem/index.ts +0 -1
- package/src/components/epi/EpiLineList/EpiLineList.tsx +0 -492
- package/src/components/epi/EpiLineList/EpiLineListPrimaryMenu.tsx +0 -189
- package/src/components/epi/EpiLineList/EpiLineListSecondaryMenu.tsx +0 -56
- package/src/components/epi/EpiLineList/EpiLineListTitle.tsx +0 -28
- package/src/components/epi/EpiLineList/index.ts +0 -1
- package/src/components/epi/EpiLineList/useEpiLineListEmitDownloadOptions.tsx +0 -102
- package/src/components/epi/EpiMap/EpiMap.tsx +0 -547
- package/src/components/epi/EpiMap/index.ts +0 -1
- package/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.tsx +0 -169
- package/src/components/epi/EpiRemoveCasesFromEventDialog/index.ts +0 -1
- package/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.tsx +0 -216
- package/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.tsx +0 -151
- package/src/components/epi/EpiSequenceDownloadDialog/index.ts +0 -1
- package/src/components/epi/EpiStratification/EpiStratification.tsx +0 -241
- package/src/components/epi/EpiStratification/index.ts +0 -1
- package/src/components/epi/EpiTree/EpiTree.tsx +0 -906
- package/src/components/epi/EpiTree/index.ts +0 -1
- package/src/components/epi/EpiTreeDescription/EpiTreeDescription.tsx +0 -71
- package/src/components/epi/EpiTreeDescription/index.ts +0 -1
- package/src/components/epi/EpiUpload/EpiUpload.tsx +0 -107
- package/src/components/epi/EpiUpload/EpiUploadCaseResultTable.tsx +0 -383
- package/src/components/epi/EpiUpload/EpiUploadCreateCases.tsx +0 -266
- package/src/components/epi/EpiUpload/EpiUploadMapColumns.tsx +0 -261
- package/src/components/epi/EpiUpload/EpiUploadMapSequences.tsx +0 -332
- package/src/components/epi/EpiUpload/EpiUploadNavigation.tsx +0 -52
- package/src/components/epi/EpiUpload/EpiUploadSelectFile.tsx +0 -285
- package/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.tsx +0 -375
- package/src/components/epi/EpiUpload/EpiUploadValidate.tsx +0 -199
- package/src/components/epi/EpiUpload/EpiUploadValidateNavigation.tsx +0 -34
- package/src/components/epi/EpiUpload/index.ts +0 -1
- package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.tsx +0 -101
- package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.tsx +0 -160
- package/src/components/epi/EpiUserRightsDialog/index.ts +0 -1
- package/src/components/epi/EpiWarning/EpiWarning.tsx +0 -39
- package/src/components/epi/EpiWarning/index.ts +0 -1
- package/src/components/epi/EpiWidget/EpiWidget.tsx +0 -255
- package/src/components/epi/EpiWidget/index.ts +0 -1
- package/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.tsx +0 -40
- package/src/components/epi/EpiWidgetHeaderIconButton/index.ts +0 -1
- package/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.tsx +0 -56
- package/src/components/epi/EpiWidgetMenu/index.ts +0 -1
- package/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.tsx +0 -51
- package/src/components/epi/EpiWidgetUnavailable/index.ts +0 -1
- package/src/components/filters/BooleanFilterField/BooleanFilterField.tsx +0 -26
- package/src/components/filters/BooleanFilterField/index.ts +0 -1
- package/src/components/filters/DateFilterField/DateFilterField.tsx +0 -23
- package/src/components/filters/DateFilterField/index.ts +0 -1
- package/src/components/filters/GeoFilterField/GeoFilterField.tsx +0 -32
- package/src/components/filters/GeoFilterField/index.ts +0 -1
- package/src/components/filters/MultiSelectFilterField/MultiSelectFilterField.tsx +0 -31
- package/src/components/filters/MultiSelectFilterField/index.ts +0 -1
- package/src/components/filters/NumberRangeFilterField/NumberRangeFilterField.tsx +0 -20
- package/src/components/filters/NumberRangeFilterField/index.ts +0 -1
- package/src/components/filters/TextFilterField/TextFilterField.tsx +0 -18
- package/src/components/filters/TextFilterField/index.ts +0 -1
- package/src/components/form/fields/Autocomplete/Autocomplete.tsx +0 -270
- package/src/components/form/fields/Autocomplete/index.ts +0 -1
- package/src/components/form/fields/CheckboxGroup/CheckboxGroup.tsx +0 -192
- package/src/components/form/fields/CheckboxGroup/index.ts +0 -1
- package/src/components/form/fields/DatePicker/DatePicker.tsx +0 -167
- package/src/components/form/fields/DatePicker/index.ts +0 -1
- package/src/components/form/fields/DateRangePicker/DateRangePicker.tsx +0 -359
- package/src/components/form/fields/DateRangePicker/index.ts +0 -1
- package/src/components/form/fields/NumberField/NumberField.tsx +0 -277
- package/src/components/form/fields/NumberField/index.ts +0 -1
- package/src/components/form/fields/NumberRangeInput/NumberRangeInput.tsx +0 -297
- package/src/components/form/fields/NumberRangeInput/index.ts +0 -1
- package/src/components/form/fields/RadioGroup/RadioGroup.tsx +0 -130
- package/src/components/form/fields/RadioGroup/index.ts +0 -1
- package/src/components/form/fields/RichTextEditor/RichTextEditor.tsx +0 -321
- package/src/components/form/fields/RichTextEditor/RichTextEditorContent.tsx +0 -34
- package/src/components/form/fields/RichTextEditor/index.ts +0 -2
- package/src/components/form/fields/RichTextEditor/useRichTextEditorExtensions.ts +0 -174
- package/src/components/form/fields/Select/Select.tsx +0 -219
- package/src/components/form/fields/Select/index.ts +0 -1
- package/src/components/form/fields/Switch/Switch.tsx +0 -116
- package/src/components/form/fields/Switch/index.ts +0 -1
- package/src/components/form/fields/TextField/TextField.tsx +0 -170
- package/src/components/form/fields/TextField/index.ts +0 -1
- package/src/components/form/fields/ToggleButtonGroup/ToggleButtonGroup.tsx +0 -118
- package/src/components/form/fields/ToggleButtonGroup/index.ts +0 -1
- package/src/components/form/fields/TransferList/TransferList.tsx +0 -360
- package/src/components/form/fields/TransferList/index.ts +0 -1
- package/src/components/form/fields/UploadButton/UploadButton.tsx +0 -157
- package/src/components/form/helpers/FormFieldHelperText/FormFieldHelperText.tsx +0 -68
- package/src/components/form/helpers/FormFieldHelperText/index.ts +0 -1
- package/src/components/form/helpers/FormFieldLoadingIndicator/FormFieldLoadingIndicator.tsx +0 -22
- package/src/components/form/helpers/FormFieldLoadingIndicator/index.ts +0 -1
- package/src/components/form/helpers/GenericForm/GenericForm.tsx +0 -187
- package/src/components/form/helpers/GenericForm/index.ts +0 -1
- package/src/components/ui/ApplicationBar/ApplicationBar.tsx +0 -74
- package/src/components/ui/ApplicationBar/ApplicationBarActions.tsx +0 -124
- package/src/components/ui/ApplicationBar/ApplicationBarActionsFeedbackItem.tsx +0 -102
- package/src/components/ui/ApplicationBar/ApplicationBarActionsInfotem.tsx +0 -60
- package/src/components/ui/ApplicationBar/ApplicationBarActionsNotificationsItem.tsx +0 -82
- package/src/components/ui/ApplicationBar/ApplicationBarActionsOrganizationSwitcherItem.tsx +0 -58
- package/src/components/ui/ApplicationBar/ApplicationBarActionsOutagesItem.tsx +0 -75
- package/src/components/ui/ApplicationBar/ApplicationBarActionsUserItem.tsx +0 -60
- package/src/components/ui/ApplicationBar/ApplicationBarNavigationMenu.tsx +0 -159
- package/src/components/ui/ApplicationBar/InfoMenu.tsx +0 -120
- package/src/components/ui/ApplicationBar/UserMenu.tsx +0 -208
- package/src/components/ui/ApplicationBar/UserOrganizationAdminMenuItem.tsx +0 -69
- package/src/components/ui/ApplicationBar/UserOwnOrganizationMenuItem.tsx +0 -54
- package/src/components/ui/ApplicationBar/index.ts +0 -1
- package/src/components/ui/ApplicationFooter/ApplicationFooter.tsx +0 -121
- package/src/components/ui/ApplicationFooter/ApplicationFooterLink.tsx +0 -48
- package/src/components/ui/ApplicationFooter/ApplicationFooterLinkSection.tsx +0 -56
- package/src/components/ui/ApplicationFooter/index.ts +0 -1
- package/src/components/ui/AuthenticationWrapper/AuthenticationWrapper.tsx +0 -208
- package/src/components/ui/AuthenticationWrapper/index.ts +0 -1
- package/src/components/ui/AuthorizationWrapper/AuthorizationWrapper.tsx +0 -75
- package/src/components/ui/AuthorizationWrapper/index.ts +0 -1
- package/src/components/ui/Breadcrumbs/Breadcrumbs.tsx +0 -92
- package/src/components/ui/Breadcrumbs/index.ts +0 -1
- package/src/components/ui/Confirmation/Confirmation.tsx +0 -10
- package/src/components/ui/Confirmation/ConfirmationRender.tsx +0 -81
- package/src/components/ui/Confirmation/index.ts +0 -2
- package/src/components/ui/ConsentDialog/ConsentDialog.tsx +0 -57
- package/src/components/ui/ConsentDialog/index.ts +0 -1
- package/src/components/ui/CopyToClipboardButton/CopyToClipboardButton.tsx +0 -94
- package/src/components/ui/CopyToClipboardButton/index.ts +0 -1
- package/src/components/ui/Dialog/Dialog.tsx +0 -196
- package/src/components/ui/Dialog/index.ts +0 -1
- package/src/components/ui/FileSelector/FileSelector.tsx +0 -358
- package/src/components/ui/FileSelector/index.ts +0 -1
- package/src/components/ui/GenericErrorMessage/GenericErrorMessage.tsx +0 -168
- package/src/components/ui/GenericErrorMessage/index.ts +0 -1
- package/src/components/ui/HomePageTrends/HomePageTrendCard.tsx +0 -132
- package/src/components/ui/HomePageTrends/HomePageTrends.tsx +0 -312
- package/src/components/ui/HomePageTrends/index.ts +0 -1
- package/src/components/ui/LicensesDialog/LicensesDialog.tsx +0 -231
- package/src/components/ui/LicensesDialog/index.ts +0 -1
- package/src/components/ui/LinearProgressWithLabel/LinearProgressWithLabel.tsx +0 -31
- package/src/components/ui/LinearProgressWithLabel/index.ts +0 -1
- package/src/components/ui/LoadingIndicator/LoadingIndicator.tsx +0 -11
- package/src/components/ui/LoadingIndicator/index.ts +0 -1
- package/src/components/ui/MyPermissionsDialog/MyPermissionsDialog.tsx +0 -95
- package/src/components/ui/MyPermissionsDialog/index.ts +0 -1
- package/src/components/ui/NavLink/NavLink.tsx +0 -47
- package/src/components/ui/NavLink/index.ts +0 -1
- package/src/components/ui/NestedMenu/IconMenuItem.tsx +0 -64
- package/src/components/ui/NestedMenu/NestedDropdown.tsx +0 -133
- package/src/components/ui/NestedMenu/NestedMenuItem.tsx +0 -250
- package/src/components/ui/NestedMenu/index.ts +0 -4
- package/src/components/ui/NestedMenu/nestedMenuItemsFromObject.tsx +0 -98
- package/src/components/ui/Notifications/NotificationItem.tsx +0 -70
- package/src/components/ui/Notifications/NotificationsDrawer.tsx +0 -161
- package/src/components/ui/Notifications/NotificationsStack.tsx +0 -45
- package/src/components/ui/Notifications/index.ts +0 -2
- package/src/components/ui/OrganizationSwitcherDialog/OrganizationSwitcherDialog.tsx +0 -204
- package/src/components/ui/OrganizationSwitcherDialog/index.ts +0 -1
- package/src/components/ui/OutageList/OutageItem.tsx +0 -48
- package/src/components/ui/OutageList/OutageList.tsx +0 -54
- package/src/components/ui/OutageList/OutageSection.tsx +0 -39
- package/src/components/ui/OutageList/index.ts +0 -1
- package/src/components/ui/OutagesDialog/OutagesDialog.tsx +0 -71
- package/src/components/ui/OutagesDialog/index.ts +0 -1
- package/src/components/ui/PageContainer/PageContainer.tsx +0 -207
- package/src/components/ui/PageContainer/index.ts +0 -1
- package/src/components/ui/PanelSeparator/PanelResizeHandle.tsx +0 -67
- package/src/components/ui/PanelSeparator/index.ts +0 -1
- package/src/components/ui/ResponseHandler/ResponseHandler.tsx +0 -79
- package/src/components/ui/ResponseHandler/index.ts +0 -1
- package/src/components/ui/Sidebar/SidebarItem.tsx +0 -138
- package/src/components/ui/Sidebar/SidebarMenu.tsx +0 -33
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- package/src/utils/AbacUtil/index.ts +0 -1
- package/src/utils/AxiosUtil/AxiosUtil.test.ts +0 -66
- package/src/utils/AxiosUtil/AxiosUtil.ts +0 -47
- package/src/utils/AxiosUtil/index.ts +0 -1
- package/src/utils/CaseSelectionUtil/CaseSelectionUtil.ts +0 -32
- package/src/utils/CaseSelectionUtil/index.ts +0 -1
- package/src/utils/CaseSetUtil/CaseSetUtil.ts +0 -13
- package/src/utils/CaseSetUtil/index.ts +0 -1
- package/src/utils/CaseTypeUtil/CaseTypeUtil.ts +0 -178
- package/src/utils/CaseTypeUtil/index.ts +0 -1
- package/src/utils/CaseUtil/CaseUtil.ts +0 -401
- package/src/utils/CaseUtil/index.ts +0 -1
- package/src/utils/DashboardUtil/DashboardUtil.ts +0 -46
- package/src/utils/DashboardUtil/index.ts +0 -1
- package/src/utils/DataHookUtil/DataHookUtil.ts +0 -137
- package/src/utils/DataHookUtil/index.ts +0 -1
- package/src/utils/DataSetUtil/DataSetUtil.ts +0 -70
- package/src/utils/DataSetUtil/index.ts +0 -1
- package/src/utils/DataUtil/DataUtil.ts +0 -84
- package/src/utils/DataUtil/index.ts +0 -1
- package/src/utils/DownloadUtil/DownloadUtil.ts +0 -237
- package/src/utils/DownloadUtil/index.ts +0 -1
- package/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.ts +0 -142
- package/src/utils/EffectiveRightsUtil/index.ts +0 -1
- package/src/utils/EpiCurveUtil/EpiCurveUtil.ts +0 -180
- package/src/utils/EpiCurveUtil/index.ts +0 -1
- package/src/utils/EpiFilterUtil/EpiFilterUtil.ts +0 -232
- package/src/utils/EpiFilterUtil/index.ts +0 -1
- package/src/utils/EpiLineListUtil/EpiLineListUtil.ts +0 -15
- package/src/utils/EpiLineListUtil/index.ts +0 -1
- package/src/utils/EpiMapUtil/EpiMapUtil.test.ts +0 -54
- package/src/utils/EpiMapUtil/EpiMapUtil.ts +0 -80
- package/src/utils/EpiMapUtil/index.ts +0 -1
- package/src/utils/EpiTreeUtil/EpiTreeUtil.test.ts +0 -2467
- package/src/utils/EpiTreeUtil/EpiTreeUtil.ts +0 -1055
- package/src/utils/EpiTreeUtil/index.ts +0 -1
- package/src/utils/EpiUploadUtil/EpiUploadUtil.ts +0 -857
- package/src/utils/EpiUploadUtil/index.ts +0 -1
- package/src/utils/FileUtil/FileUtil.ts +0 -22
- package/src/utils/FileUtil/index.ts +0 -1
- package/src/utils/FormUtil/FormUtil.test.ts +0 -36
- package/src/utils/FormUtil/FormUtil.ts +0 -63
- package/src/utils/FormUtil/index.ts +0 -1
- package/src/utils/MenuDataUtil/MenuDataUtil.ts +0 -54
- package/src/utils/MenuDataUtil/index.ts +0 -1
- package/src/utils/NewickUtil/NewickUtil.test.ts +0 -187
- package/src/utils/NewickUtil/NewickUtil.ts +0 -69
- package/src/utils/NewickUtil/index.ts +0 -1
- package/src/utils/NotificationUtil/NotificationUtil.ts +0 -28
- package/src/utils/NotificationUtil/index.ts +0 -1
- package/src/utils/NumberUtil/NumberUtil.test.ts +0 -113
- package/src/utils/NumberUtil/NumberUtil.ts +0 -67
- package/src/utils/NumberUtil/index.ts +0 -1
- package/src/utils/ObjectUtil/ObjectUtil.test.ts +0 -43
- package/src/utils/ObjectUtil/ObjectUtil.ts +0 -28
- package/src/utils/ObjectUtil/index.ts +0 -1
- package/src/utils/OutageUtil/OutageUtil.test.ts +0 -108
- package/src/utils/OutageUtil/OutageUtil.ts +0 -81
- package/src/utils/OutageUtil/index.ts +0 -1
- package/src/utils/QueryUtil/QueryUtil.test.ts +0 -42
- package/src/utils/QueryUtil/QueryUtil.ts +0 -105
- package/src/utils/QueryUtil/index.ts +0 -1
- package/src/utils/StringUtil/StringUtil.test.ts +0 -61
- package/src/utils/StringUtil/StringUtil.ts +0 -91
- package/src/utils/StringUtil/index.ts +0 -1
- package/src/utils/TableUtil/TableUtil.ts +0 -665
- package/src/utils/TableUtil/index.ts +0 -1
- package/src/utils/TestIdUtil/TestIdUtil.test.ts +0 -12
- package/src/utils/TestIdUtil/TestIdUtil.ts +0 -13
- package/src/utils/TestIdUtil/index.ts +0 -1
- package/src/utils/TimeUtil/TimeUtil.ts +0 -38
- package/src/utils/TimeUtil/index.ts +0 -1
- package/src/utils/UserManagerUtil/UserManagerUtil.test.ts +0 -41
- package/src/utils/UserManagerUtil/UserManagerUtil.ts +0 -39
- package/src/utils/UserManagerUtil/index.ts +0 -1
- package/src/utils/ValidationUtil/ValidationUtil.test.ts +0 -61
- package/src/utils/ValidationUtil/ValidationUtil.ts +0 -56
- package/src/utils/ValidationUtil/index.ts +0 -1
- /package/{src → dist}/locale/en.json +0 -0
- /package/{src → dist}/locale/nl.json +0 -0
- /package/{src/@types → dist}/mui.d.ts +0 -0
- /package/{src/@types → dist}/ui.d.ts +0 -0
- /package/{src/@types → dist}/vite-env.d.ts +0 -0
- /package/{src/@types → dist}/yup.d.ts +0 -0
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export * from './EpiUploadUtil';
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import { FileCompression } from '../../api';
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export class FileUtil {
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public static getReadableFileSize(sizeInBytes: number): string {
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if (sizeInBytes < 1024) {
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return `${sizeInBytes} B`;
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} else if (sizeInBytes < 1024 * 1024) {
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return `${(sizeInBytes / 1024).toFixed(2)} KB`;
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} else if (sizeInBytes < 1024 * 1024 * 1024) {
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return `${(sizeInBytes / (1024 * 1024)).toFixed(2)} MB`;
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}
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return `${(sizeInBytes / (1024 * 1024 * 1024)).toFixed(2)} GB`;
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}
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public static getFileCompressionFromFileName(fileName: string): FileCompression {
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const lowerFileName = fileName.toLowerCase();
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if (lowerFileName.endsWith('.gz') || lowerFileName.endsWith('.gzip')) {
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return FileCompression.GZIP;
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}
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return FileCompression.NONE;
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}
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}
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export * from './FileUtil';
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import {
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describe,
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it,
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expect,
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} from 'vitest';
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import type {
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FieldErrorsImpl,
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DeepRequired,
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} from 'react-hook-form';
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import { FormUtil } from './FormUtil';
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describe('FormUtil', () => {
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describe('getFieldErrorMessage', () => {
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it('should return the error message for the given field name', () => {
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const fieldErrors: Partial<FieldErrorsImpl<DeepRequired<{ name: string }>>> = {
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name: { message: 'Name is required', type: 'required' },
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};
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const errorMessage = FormUtil.getFieldErrorMessage(fieldErrors, 'name');
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expect(errorMessage).toBe('Name is required');
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});
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it('should return null if there is no error message for the given field name', () => {
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const fieldErrors: Partial<FieldErrorsImpl<DeepRequired<{ name: string }>>> = {};
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const errorMessage = FormUtil.getFieldErrorMessage(fieldErrors, 'name');
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expect(errorMessage).toBeNull();
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});
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it('should return null if the fieldErrors object is undefined', () => {
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const errorMessage = FormUtil.getFieldErrorMessage(undefined, 'name');
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expect(errorMessage).toBeNull();
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});
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});
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});
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import type {
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FieldValues,
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FieldErrorsImpl,
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DeepRequired,
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} from 'react-hook-form';
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import {
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parseISO,
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isValid,
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} from 'date-fns';
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import type { TFunction } from 'i18next';
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import type { FormFieldDefinition } from '../../models/form';
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import { FORM_FIELD_DEFINITION_TYPE } from '../../models/form';
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export class FormUtil {
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public static getFieldErrorMessage<TFormFields extends FieldValues>(fieldErrors: Partial<FieldErrorsImpl<DeepRequired<TFormFields>>>, fieldName: string): string {
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const fieldError = fieldErrors?.[fieldName];
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return fieldError?.message as string || null;
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}
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public static createBooleanOptions(t: TFunction<'translation', undefined>): { label: string; value: boolean }[] {
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return [
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{ value: true, label: t`Yes` }, // t`Yes`
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{ value: false, label: t`No` }, // t`No`
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];
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}
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public static createFormValues<TFormFields extends FieldValues, TData = TFormFields>(formFieldDefinitions: FormFieldDefinition<TFormFields>[], item: TData): TFormFields {
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const itemValues: { [key: string]: unknown } = {};
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formFieldDefinitions.forEach(formFieldDefinition => {
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switch (formFieldDefinition.definition) {
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case FORM_FIELD_DEFINITION_TYPE.TEXTFIELD:
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case FORM_FIELD_DEFINITION_TYPE.RICH_TEXT:
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case FORM_FIELD_DEFINITION_TYPE.BOOLEAN:
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itemValues[formFieldDefinition.name] = item?.[formFieldDefinition.name as unknown as keyof typeof item] ?? '';
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break;
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case FORM_FIELD_DEFINITION_TYPE.TRANSFER_LIST:
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itemValues[formFieldDefinition.name] = item?.[formFieldDefinition.name as unknown as keyof typeof item] ?? [] as TFormFields[keyof TFormFields];
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break;
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case FORM_FIELD_DEFINITION_TYPE.AUTOCOMPLETE:
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case FORM_FIELD_DEFINITION_TYPE.SELECT:
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if (formFieldDefinition.multiple) {
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itemValues[formFieldDefinition.name] = item?.[formFieldDefinition.name as unknown as keyof typeof item] ?? [] as TFormFields[keyof TFormFields];
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} else {
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itemValues[formFieldDefinition.name] = item?.[formFieldDefinition.name as unknown as keyof typeof item] ?? null;
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}
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break;
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case FORM_FIELD_DEFINITION_TYPE.DATE:
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try {
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const dateValue = parseISO(item?.[formFieldDefinition.name as unknown as keyof typeof item] as string);
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itemValues[formFieldDefinition.name] = isValid(dateValue) ? dateValue as TFormFields[keyof TFormFields] : null;
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} catch (_error) {
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itemValues[formFieldDefinition.name] = null;
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}
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break;
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default:
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break;
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}
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});
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return itemValues as unknown as TFormFields;
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}
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}
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@@ -1 +0,0 @@
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export * from './FormUtil';
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@@ -1,54 +0,0 @@
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import type { MenuItemData } from '../../models/nestedMenu';
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export class MenuDataUtil {
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public static isMenuItemData(value: unknown): value is MenuItemData {
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if (typeof value !== 'object' || value === null) {
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return false;
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}
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-
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const item = value as Record<string, unknown>;
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if (item.uid !== undefined && typeof item.uid !== 'string') {
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return false;
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}
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if (item.label !== undefined && typeof item.label !== 'string') {
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return false;
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}
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if (item.callback !== undefined && typeof item.callback !== 'function') {
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return false;
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}
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24
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if (item.items !== undefined && (!Array.isArray(item.items) || !item.items.every(MenuDataUtil.isMenuItemData))) {
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return false;
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}
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-
|
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if (item.disabled !== undefined && typeof item.disabled !== 'boolean') {
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return false;
|
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}
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31
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-
|
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32
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if (item.divider !== undefined && typeof item.divider !== 'boolean') {
|
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return false;
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}
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35
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-
|
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36
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if (item.autoCloseDisabled !== undefined && typeof item.autoCloseDisabled !== 'boolean') {
|
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return false;
|
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38
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-
}
|
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39
|
-
|
|
40
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-
if (item.active !== undefined && typeof item.active !== 'boolean') {
|
|
41
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-
return false;
|
|
42
|
-
}
|
|
43
|
-
|
|
44
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-
if (item.checked !== undefined && !['true', 'false', 'mixed'].includes(item.checked as string)) {
|
|
45
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-
return false;
|
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46
|
-
}
|
|
47
|
-
|
|
48
|
-
return true;
|
|
49
|
-
}
|
|
50
|
-
|
|
51
|
-
public static isMenuItemDataArray(value: unknown): value is MenuItemData[] {
|
|
52
|
-
return Array.isArray(value) && value.every(MenuDataUtil.isMenuItemData);
|
|
53
|
-
}
|
|
54
|
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}
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|
@@ -1 +0,0 @@
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|
|
1
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export * from './MenuDataUtil';
|
|
@@ -1,187 +0,0 @@
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|
|
1
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import {
|
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2
|
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describe,
|
|
3
|
-
it,
|
|
4
|
-
expect,
|
|
5
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} from 'vitest';
|
|
6
|
-
import Decimal from 'decimal.js';
|
|
7
|
-
|
|
8
|
-
import type { TreeNode } from '../../models/tree';
|
|
9
|
-
|
|
10
|
-
import { NewickUtil } from './NewickUtil';
|
|
11
|
-
|
|
12
|
-
describe('NewickUtil', () => {
|
|
13
|
-
describe('parseNewick', () => {
|
|
14
|
-
it('should parse a simple Newick string', () => {
|
|
15
|
-
const newick = '(A,B,(C,D));';
|
|
16
|
-
const expectedTree: Partial<TreeNode> = {
|
|
17
|
-
children: [
|
|
18
|
-
{
|
|
19
|
-
name: 'A',
|
|
20
|
-
size: 1,
|
|
21
|
-
maxBranchLength: new Decimal(0),
|
|
22
|
-
subTreeNames: [],
|
|
23
|
-
subTreeLeaveNames: [
|
|
24
|
-
'A',
|
|
25
|
-
],
|
|
26
|
-
},
|
|
27
|
-
{
|
|
28
|
-
name: 'B',
|
|
29
|
-
size: 1,
|
|
30
|
-
maxBranchLength: new Decimal(0),
|
|
31
|
-
subTreeNames: [],
|
|
32
|
-
subTreeLeaveNames: [
|
|
33
|
-
'B',
|
|
34
|
-
],
|
|
35
|
-
},
|
|
36
|
-
{
|
|
37
|
-
children: [
|
|
38
|
-
{
|
|
39
|
-
name: 'C',
|
|
40
|
-
size: 1,
|
|
41
|
-
maxBranchLength: new Decimal(0),
|
|
42
|
-
subTreeNames: [],
|
|
43
|
-
subTreeLeaveNames: [
|
|
44
|
-
'C',
|
|
45
|
-
],
|
|
46
|
-
},
|
|
47
|
-
{
|
|
48
|
-
name: 'D',
|
|
49
|
-
size: 1,
|
|
50
|
-
maxBranchLength: new Decimal(0),
|
|
51
|
-
subTreeNames: [],
|
|
52
|
-
subTreeLeaveNames: [
|
|
53
|
-
'D',
|
|
54
|
-
],
|
|
55
|
-
},
|
|
56
|
-
],
|
|
57
|
-
size: 2,
|
|
58
|
-
subTreeNames: [],
|
|
59
|
-
subTreeLeaveNames: [
|
|
60
|
-
'C',
|
|
61
|
-
'D',
|
|
62
|
-
],
|
|
63
|
-
maxBranchLength: new Decimal(0),
|
|
64
|
-
},
|
|
65
|
-
],
|
|
66
|
-
size: 4,
|
|
67
|
-
subTreeNames: [],
|
|
68
|
-
subTreeLeaveNames: [
|
|
69
|
-
'A',
|
|
70
|
-
'B',
|
|
71
|
-
'C',
|
|
72
|
-
'D',
|
|
73
|
-
],
|
|
74
|
-
name: 'Root',
|
|
75
|
-
branchLength: new Decimal(0),
|
|
76
|
-
maxBranchLength: new Decimal(0),
|
|
77
|
-
};
|
|
78
|
-
|
|
79
|
-
const tree = NewickUtil.parse(newick);
|
|
80
|
-
expect(tree).toEqual(expectedTree);
|
|
81
|
-
});
|
|
82
|
-
|
|
83
|
-
it('should handle branch lengths', () => {
|
|
84
|
-
const newick = '(A:0.1,B:0.2,(C:0.3,D:0.4):0.5);';
|
|
85
|
-
const expectedTree: Partial<TreeNode> = {
|
|
86
|
-
children: [
|
|
87
|
-
{
|
|
88
|
-
name: 'A',
|
|
89
|
-
branchLength: new Decimal('0.1'),
|
|
90
|
-
subTreeNames: [],
|
|
91
|
-
subTreeLeaveNames: [
|
|
92
|
-
'A',
|
|
93
|
-
],
|
|
94
|
-
maxBranchLength: new Decimal('0.1'),
|
|
95
|
-
size: 1,
|
|
96
|
-
},
|
|
97
|
-
{
|
|
98
|
-
name: 'B',
|
|
99
|
-
branchLength: new Decimal('0.2'),
|
|
100
|
-
subTreeNames: [],
|
|
101
|
-
subTreeLeaveNames: [
|
|
102
|
-
'B',
|
|
103
|
-
],
|
|
104
|
-
maxBranchLength: new Decimal('0.2'),
|
|
105
|
-
size: 1,
|
|
106
|
-
},
|
|
107
|
-
{
|
|
108
|
-
children: [
|
|
109
|
-
{
|
|
110
|
-
name: 'C',
|
|
111
|
-
branchLength: new Decimal('0.3'),
|
|
112
|
-
subTreeNames: [],
|
|
113
|
-
subTreeLeaveNames: [
|
|
114
|
-
'C',
|
|
115
|
-
],
|
|
116
|
-
maxBranchLength: new Decimal('0.3'),
|
|
117
|
-
size: 1,
|
|
118
|
-
},
|
|
119
|
-
{
|
|
120
|
-
name: 'D',
|
|
121
|
-
branchLength: new Decimal('0.4'),
|
|
122
|
-
subTreeNames: [],
|
|
123
|
-
subTreeLeaveNames: [
|
|
124
|
-
'D',
|
|
125
|
-
],
|
|
126
|
-
maxBranchLength: new Decimal('0.4'),
|
|
127
|
-
size: 1,
|
|
128
|
-
},
|
|
129
|
-
],
|
|
130
|
-
size: 2,
|
|
131
|
-
subTreeNames: [
|
|
132
|
-
'C',
|
|
133
|
-
'D',
|
|
134
|
-
],
|
|
135
|
-
subTreeLeaveNames: [
|
|
136
|
-
'C',
|
|
137
|
-
'D',
|
|
138
|
-
],
|
|
139
|
-
branchLength: new Decimal('0.5'),
|
|
140
|
-
maxBranchLength: new Decimal('0.9'),
|
|
141
|
-
name: 'Generated-7225787341756924',
|
|
142
|
-
},
|
|
143
|
-
],
|
|
144
|
-
size: 4,
|
|
145
|
-
subTreeNames: [
|
|
146
|
-
'C',
|
|
147
|
-
'D',
|
|
148
|
-
],
|
|
149
|
-
subTreeLeaveNames: [
|
|
150
|
-
'A',
|
|
151
|
-
'B',
|
|
152
|
-
'C',
|
|
153
|
-
'D',
|
|
154
|
-
],
|
|
155
|
-
name: 'Root',
|
|
156
|
-
branchLength: new Decimal('0'),
|
|
157
|
-
maxBranchLength: new Decimal('0.9'),
|
|
158
|
-
};
|
|
159
|
-
const tree = NewickUtil.parse(newick);
|
|
160
|
-
expect(tree).toEqual(expectedTree);
|
|
161
|
-
});
|
|
162
|
-
|
|
163
|
-
it('should handle a single leaf (no parentheses)', () => {
|
|
164
|
-
const newick = 'A;';
|
|
165
|
-
const expectedTree: Partial<TreeNode> = {
|
|
166
|
-
branchLength: new Decimal(0),
|
|
167
|
-
maxBranchLength: new Decimal(0),
|
|
168
|
-
name: 'Root',
|
|
169
|
-
};
|
|
170
|
-
|
|
171
|
-
const tree = NewickUtil.parse(newick);
|
|
172
|
-
expect(tree).toEqual(expectedTree);
|
|
173
|
-
});
|
|
174
|
-
});
|
|
175
|
-
|
|
176
|
-
describe('getSortedNames', () => {
|
|
177
|
-
it('should return the name for a leaf node', () => {
|
|
178
|
-
const leaf: TreeNode = { name: 'A' };
|
|
179
|
-
expect(NewickUtil.getSortedNames(leaf)).toEqual(['A']);
|
|
180
|
-
});
|
|
181
|
-
|
|
182
|
-
it('should return leaf names in depth-first order for a tree', () => {
|
|
183
|
-
const tree = NewickUtil.parse('(A,B,(C,D));');
|
|
184
|
-
expect(NewickUtil.getSortedNames(tree)).toEqual(['A', 'B', 'C', 'D']);
|
|
185
|
-
});
|
|
186
|
-
});
|
|
187
|
-
});
|
|
@@ -1,69 +0,0 @@
|
|
|
1
|
-
import Decimal from 'decimal.js';
|
|
2
|
-
import sum from 'lodash/sum';
|
|
3
|
-
|
|
4
|
-
import { StringUtil } from '../StringUtil';
|
|
5
|
-
import type { TreeNode } from '../../models/tree';
|
|
6
|
-
|
|
7
|
-
export class NewickUtil {
|
|
8
|
-
public static parse(newick: string): TreeNode {
|
|
9
|
-
const ancestors: Array<Partial<TreeNode>> = [];
|
|
10
|
-
let tree: Partial<TreeNode> = {};
|
|
11
|
-
const tokens = newick.split(/(;|\(|\)|,|:)/).map(x => x.trim()).filter(x => x);
|
|
12
|
-
for (let i = 0; i < tokens.length; i++) {
|
|
13
|
-
const token = tokens[i];
|
|
14
|
-
const subtree: Partial<TreeNode> = {};
|
|
15
|
-
const x = tokens[i - 1];
|
|
16
|
-
switch (token) {
|
|
17
|
-
case '(': // new children
|
|
18
|
-
tree.children = [subtree];
|
|
19
|
-
ancestors.push(tree);
|
|
20
|
-
tree = subtree;
|
|
21
|
-
break;
|
|
22
|
-
case ',': // another branch
|
|
23
|
-
ancestors[ancestors.length - 1].children.push(subtree);
|
|
24
|
-
tree = subtree;
|
|
25
|
-
break;
|
|
26
|
-
case ')': // optional name next
|
|
27
|
-
tree = ancestors.pop();
|
|
28
|
-
tree.children.forEach(child => {
|
|
29
|
-
if (!child.children) {
|
|
30
|
-
child.size = 1;
|
|
31
|
-
child.maxBranchLength = new Decimal(child.branchLength ?? 0);
|
|
32
|
-
child.subTreeLeaveNames = [child.name];
|
|
33
|
-
child.subTreeNames = child.subTreeNames ?? [];
|
|
34
|
-
}
|
|
35
|
-
});
|
|
36
|
-
tree.size = sum(tree.children.map(child => child.size));
|
|
37
|
-
tree.subTreeNames = tree.children.map(child => child.subTreeNames).flat().filter(n => n);
|
|
38
|
-
tree.subTreeLeaveNames = tree.children.map(child => child.subTreeLeaveNames).flat().filter(n => n);
|
|
39
|
-
tree.maxBranchLength = Decimal.max(...tree.children.map(child => child.maxBranchLength));
|
|
40
|
-
break;
|
|
41
|
-
case ':': // optional length next
|
|
42
|
-
break;
|
|
43
|
-
case ';': // end of tree, nothing to do
|
|
44
|
-
break;
|
|
45
|
-
default:
|
|
46
|
-
if (x === ')' || x === '(' || x === ',') {
|
|
47
|
-
tree.name = token;
|
|
48
|
-
} else if (x === ':') {
|
|
49
|
-
tree.branchLength = new Decimal(token);
|
|
50
|
-
tree.subTreeNames = (tree.children ?? []).map(child => [child.name, ...child.subTreeNames]).flat().filter(n => n);
|
|
51
|
-
tree.subTreeLeaveNames = (tree.children ?? []).map(child => child.subTreeLeaveNames).flat().filter(n => n);
|
|
52
|
-
tree.maxBranchLength = tree.branchLength.add(tree.children?.length ? Decimal.max(...tree.children.map(child => child.maxBranchLength)) : 0);
|
|
53
|
-
tree.name = tree.name || `Generated-${StringUtil.createHash(tree.subTreeNames.join(','))}`;
|
|
54
|
-
}
|
|
55
|
-
}
|
|
56
|
-
}
|
|
57
|
-
tree.branchLength = tree.branchLength ?? new Decimal(0);
|
|
58
|
-
tree.maxBranchLength = tree.children?.length ? Decimal.max(...tree.children.map(child => child.maxBranchLength)) : new Decimal(0);
|
|
59
|
-
tree.name = 'Root';
|
|
60
|
-
return tree;
|
|
61
|
-
}
|
|
62
|
-
|
|
63
|
-
public static getSortedNames(node: TreeNode): string[] {
|
|
64
|
-
return [
|
|
65
|
-
...(node.children ?? []).map(child => NewickUtil.getSortedNames(child)).flat(),
|
|
66
|
-
...(!node.children ? [node.name] : []),
|
|
67
|
-
];
|
|
68
|
-
}
|
|
69
|
-
}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
export * from './NewickUtil';
|
|
@@ -1,28 +0,0 @@
|
|
|
1
|
-
import { t } from 'i18next';
|
|
2
|
-
import type { ReactElement } from 'react';
|
|
3
|
-
|
|
4
|
-
import { AxiosUtil } from '../AxiosUtil';
|
|
5
|
-
|
|
6
|
-
export class NotificationUtil {
|
|
7
|
-
public static wrapErrorNotificationMessage(message: string | ReactElement, error: unknown): string | ReactElement {
|
|
8
|
-
if (AxiosUtil.isAxiosForbiddenError(error)) {
|
|
9
|
-
message = t('{{message}} - You do not have permission to perform this action.', { message });
|
|
10
|
-
}
|
|
11
|
-
if (AxiosUtil.isAxiosUnauthorizedError(error)) {
|
|
12
|
-
message = t('{{message}} - You are not logged in.', { message });
|
|
13
|
-
}
|
|
14
|
-
if (AxiosUtil.isAxiosNotFoundError(error)) {
|
|
15
|
-
message = t('{{message}} - The item does not exist.', { message });
|
|
16
|
-
}
|
|
17
|
-
if (AxiosUtil.isAxiosBadRequestError(error)) {
|
|
18
|
-
message = t('{{message}} - Bad request. The input data was not correct.', { message });
|
|
19
|
-
}
|
|
20
|
-
if (AxiosUtil.isAxiosConflictError(error)) {
|
|
21
|
-
message = t('{{message}} - Conflict. The request could not be completed due to a conflict with the current state of the resource.', { message });
|
|
22
|
-
}
|
|
23
|
-
if (AxiosUtil.isAxiosInternalServerError(error)) {
|
|
24
|
-
message = t('{{message}} - Internal Server Error. Please try again later.', { message });
|
|
25
|
-
}
|
|
26
|
-
return message;
|
|
27
|
-
}
|
|
28
|
-
}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
export * from './NotificationUtil';
|
|
@@ -1,113 +0,0 @@
|
|
|
1
|
-
import {
|
|
2
|
-
describe,
|
|
3
|
-
it,
|
|
4
|
-
expect,
|
|
5
|
-
} from 'vitest';
|
|
6
|
-
|
|
7
|
-
import { NumberUtil } from './NumberUtil';
|
|
8
|
-
|
|
9
|
-
describe('NumberUtil', () => {
|
|
10
|
-
describe('toStringWithPrecision', () => {
|
|
11
|
-
it('should return a string with the correct precision', () => {
|
|
12
|
-
expect(NumberUtil.toStringWithPrecision(123.456, 0.01)).toBe('123.45');
|
|
13
|
-
expect(NumberUtil.toStringWithPrecision(123.4, 0.01)).toBe('123.40');
|
|
14
|
-
expect(NumberUtil.toStringWithPrecision(123, 0.01)).toBe('123.00');
|
|
15
|
-
expect(NumberUtil.toStringWithPrecision(123.456, 0.1)).toBe('123.4');
|
|
16
|
-
expect(NumberUtil.toStringWithPrecision(123.456, 1)).toBe('123');
|
|
17
|
-
});
|
|
18
|
-
|
|
19
|
-
it('should return an empty string if the value is not a number', () => {
|
|
20
|
-
expect(NumberUtil.toStringWithPrecision(NaN, 0.01)).toBe('');
|
|
21
|
-
expect(NumberUtil.toStringWithPrecision(undefined as unknown as number, 0.01)).toBe('');
|
|
22
|
-
expect(NumberUtil.toStringWithPrecision(null as unknown as number, 0.01)).toBe('');
|
|
23
|
-
});
|
|
24
|
-
|
|
25
|
-
it('should handle cases where the base has no decimal part', () => {
|
|
26
|
-
expect(NumberUtil.toStringWithPrecision(123.456, 1)).toBe('123');
|
|
27
|
-
expect(NumberUtil.toStringWithPrecision(123.456, 10)).toBe('123');
|
|
28
|
-
});
|
|
29
|
-
});
|
|
30
|
-
|
|
31
|
-
|
|
32
|
-
describe('parse', () => {
|
|
33
|
-
it('should parse decimal formats with dots', () => {
|
|
34
|
-
expect(NumberUtil.parse('1.0')).toBe(1.0);
|
|
35
|
-
expect(NumberUtil.parse('1.5')).toBe(1.5);
|
|
36
|
-
expect(NumberUtil.parse('0.001')).toBe(0.001);
|
|
37
|
-
});
|
|
38
|
-
|
|
39
|
-
it('should parse decimal formats with commas', () => {
|
|
40
|
-
expect(NumberUtil.parse('1,0')).toBe(1.0);
|
|
41
|
-
expect(NumberUtil.parse('1,5')).toBe(1.5);
|
|
42
|
-
expect(NumberUtil.parse('123,456')).toBe(123.456);
|
|
43
|
-
expect(NumberUtil.parse('0,001')).toBe(0.001);
|
|
44
|
-
});
|
|
45
|
-
|
|
46
|
-
it('should parse thousands separators correctly', () => {
|
|
47
|
-
expect(NumberUtil.parse('1.000')).toBe(1);
|
|
48
|
-
expect(NumberUtil.parse('1,000')).toBe(1);
|
|
49
|
-
expect(NumberUtil.parse('123,456')).toBe(123.456);
|
|
50
|
-
expect(NumberUtil.parse('1.234.567')).toBe(1234567);
|
|
51
|
-
expect(NumberUtil.parse('1,234,567')).toBe(1234567);
|
|
52
|
-
expect(NumberUtil.parse('1,234,567.5')).toBe(1234567.5);
|
|
53
|
-
expect(NumberUtil.parse('1 234.567')).toBe(1234.567);
|
|
54
|
-
expect(NumberUtil.parse('1 234 567')).toBe(1234567);
|
|
55
|
-
expect(NumberUtil.parse('1 234 567.5')).toBe(1234567.5);
|
|
56
|
-
});
|
|
57
|
-
|
|
58
|
-
it('should parse mixed formats with thousands and decimals', () => {
|
|
59
|
-
expect(NumberUtil.parse('1,234.56')).toBe(1234.56);
|
|
60
|
-
expect(NumberUtil.parse('1.234,56')).toBe(1234.56);
|
|
61
|
-
expect(NumberUtil.parse('123,456.789')).toBe(123456.789);
|
|
62
|
-
expect(NumberUtil.parse('123.456,789')).toBe(123456.789);
|
|
63
|
-
expect(NumberUtil.parse('123 456.789')).toBe(123456.789);
|
|
64
|
-
expect(NumberUtil.parse('123 456,789')).toBe(123456.789);
|
|
65
|
-
});
|
|
66
|
-
|
|
67
|
-
it('should parse negative numbers', () => {
|
|
68
|
-
expect(NumberUtil.parse('-1.0')).toBe(-1.0);
|
|
69
|
-
expect(NumberUtil.parse('-1,0')).toBe(-1.0);
|
|
70
|
-
expect(NumberUtil.parse('-123.456')).toBe(-123.456);
|
|
71
|
-
expect(NumberUtil.parse('-1,234.56')).toBe(-1234.56);
|
|
72
|
-
expect(NumberUtil.parse('-1,000')).toBe(-1);
|
|
73
|
-
});
|
|
74
|
-
|
|
75
|
-
it('should parse whole numbers without separators', () => {
|
|
76
|
-
expect(NumberUtil.parse('123')).toBe(123);
|
|
77
|
-
expect(NumberUtil.parse('0')).toBe(0);
|
|
78
|
-
expect(NumberUtil.parse('999')).toBe(999);
|
|
79
|
-
expect(NumberUtil.parse('-456')).toBe(-456);
|
|
80
|
-
});
|
|
81
|
-
|
|
82
|
-
it('should handle whitespace', () => {
|
|
83
|
-
expect(NumberUtil.parse(' 123.45 ')).toBe(123.45);
|
|
84
|
-
expect(NumberUtil.parse(' 1,234.56 ')).toBe(1234.56);
|
|
85
|
-
expect(NumberUtil.parse('\t123\t')).toBe(123);
|
|
86
|
-
});
|
|
87
|
-
|
|
88
|
-
it('should handle edge cases and invalid inputs', () => {
|
|
89
|
-
expect(NumberUtil.parse('')).toBeNaN();
|
|
90
|
-
expect(NumberUtil.parse(' ')).toBeNaN();
|
|
91
|
-
expect(NumberUtil.parse('abc')).toBeNaN();
|
|
92
|
-
expect(NumberUtil.parse('12.34.56.78')).toBe(12345678);
|
|
93
|
-
expect(NumberUtil.parse('1,2,3,4')).toBe(1234);
|
|
94
|
-
});
|
|
95
|
-
|
|
96
|
-
it('should handle type safety', () => {
|
|
97
|
-
expect(NumberUtil.parse(null)).toBeNaN();
|
|
98
|
-
expect(NumberUtil.parse(undefined)).toBeNaN();
|
|
99
|
-
expect(NumberUtil.parse(123)).toBe(123);
|
|
100
|
-
});
|
|
101
|
-
|
|
102
|
-
it('should handle precision edge cases', () => {
|
|
103
|
-
expect(NumberUtil.parse('1.1234')).toBe(1.1234);
|
|
104
|
-
expect(NumberUtil.parse('1,1234')).toBe(1.1234);
|
|
105
|
-
expect(NumberUtil.parse('123.45,67')).toBe(12345.67);
|
|
106
|
-
expect(NumberUtil.parse('0.0')).toBe(0.0);
|
|
107
|
-
expect(NumberUtil.parse('0,0')).toBe(0.0);
|
|
108
|
-
expect(NumberUtil.parse(' ')).toBe(NaN);
|
|
109
|
-
expect(NumberUtil.parse('')).toBe(NaN);
|
|
110
|
-
|
|
111
|
-
});
|
|
112
|
-
});
|
|
113
|
-
});
|
|
@@ -1,67 +0,0 @@
|
|
|
1
|
-
import { number } from 'yup';
|
|
2
|
-
|
|
3
|
-
export class NumberUtil {
|
|
4
|
-
public static get yup() {
|
|
5
|
-
return number().typeError('');
|
|
6
|
-
}
|
|
7
|
-
|
|
8
|
-
public static toStringWithPrecision(value: number, base: number): string {
|
|
9
|
-
if (typeof value !== 'number' || !isFinite(value)) {
|
|
10
|
-
return '';
|
|
11
|
-
}
|
|
12
|
-
const precision = base.toString().split('.')?.[1]?.length ?? 0;
|
|
13
|
-
const splitValue = value.toString().split('.');
|
|
14
|
-
|
|
15
|
-
let stringValue = splitValue[0];
|
|
16
|
-
if (precision > 0) {
|
|
17
|
-
stringValue = `${stringValue}.${(splitValue[1] ?? '').padEnd(precision, '0').slice(0, precision)}`;
|
|
18
|
-
}
|
|
19
|
-
return stringValue;
|
|
20
|
-
}
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
public static parse(value: string | number): number {
|
|
24
|
-
if (typeof value === 'number') {
|
|
25
|
-
return value;
|
|
26
|
-
}
|
|
27
|
-
|
|
28
|
-
if (typeof value !== 'string' || value.trim() === '') {
|
|
29
|
-
return NaN;
|
|
30
|
-
}
|
|
31
|
-
|
|
32
|
-
let sanitizedValue = value
|
|
33
|
-
.trim()
|
|
34
|
-
.replace(/[^0-9,.-\s]/g, ''); // Remove all except digits, commas, periods, minus signs, and whitespace
|
|
35
|
-
|
|
36
|
-
// if multiple commas or periods exist, assume they are thousands separators and remove them
|
|
37
|
-
const periodMatchesLength = (sanitizedValue.match(/[.]/g) || []).length;
|
|
38
|
-
const commaMatchesLength = (sanitizedValue.match(/[,]/g) || []).length;
|
|
39
|
-
const spaceMatchesLength = (sanitizedValue.match(/[\s]/g) || []).length;
|
|
40
|
-
|
|
41
|
-
if ([periodMatchesLength, commaMatchesLength, spaceMatchesLength].filter(count => count > 1).length > 1) {
|
|
42
|
-
return NaN;
|
|
43
|
-
}
|
|
44
|
-
|
|
45
|
-
if (commaMatchesLength > 1) {
|
|
46
|
-
// Remove all commas if there are multiple, assuming they are thousands separators
|
|
47
|
-
// Note: remaining periods are treated as decimal separators
|
|
48
|
-
return parseFloat(sanitizedValue.replace(/[,\s]/g, ''));
|
|
49
|
-
}
|
|
50
|
-
if (spaceMatchesLength > 1) {
|
|
51
|
-
// Remove all whitespace if there are multiple, assuming they are thousands separators
|
|
52
|
-
sanitizedValue = sanitizedValue.replace(/\s/g, '');
|
|
53
|
-
// Note: remaining commas or periods are treated as decimal separators
|
|
54
|
-
return parseFloat(sanitizedValue.replace(',', '.'));
|
|
55
|
-
}
|
|
56
|
-
if (periodMatchesLength > 1) {
|
|
57
|
-
// Remove all periods if there are multiple, assuming they are thousands separators
|
|
58
|
-
sanitizedValue = sanitizedValue.replace(/[.\s]/g, '').replace(',', '.'); // Replace remaining comma with period for decimal
|
|
59
|
-
return parseFloat(sanitizedValue);
|
|
60
|
-
}
|
|
61
|
-
|
|
62
|
-
sanitizedValue = sanitizedValue.replace(/[,.\s](?=.*[,.\s])/g, '')
|
|
63
|
-
.replace(',', '.'); // Replace remaining comma with period for decimal
|
|
64
|
-
|
|
65
|
-
return parseFloat(sanitizedValue);
|
|
66
|
-
}
|
|
67
|
-
}
|
|
@@ -1 +0,0 @@
|
|
|
1
|
-
export * from './NumberUtil';
|