@gen-epix/ui 1.15.1 → 1.16.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (739) hide show
  1. package/dist/environment.d.ts +54 -0
  2. package/dist/index.d.ts +16090 -0
  3. package/dist/index.js +125 -106
  4. package/dist/index.js.map +1 -0
  5. package/package.json +14 -16
  6. package/src/@types/environment.d.ts +0 -54
  7. package/src/api/api.ts +0 -43576
  8. package/src/api/base.ts +0 -111
  9. package/src/api/common.ts +0 -168
  10. package/src/api/configuration.ts +0 -118
  11. package/src/api/index.ts +0 -20
  12. package/src/assets/icons/CollectionIcon.svg +0 -1
  13. package/src/assets/icons/DnaIcon.svg +0 -1
  14. package/src/assets/icons/VirusIcon.svg +0 -1
  15. package/src/assets/logo/logo-rijksoverheid.svg +0 -42
  16. package/src/assets/logo/logo-rivm.svg +0 -6
  17. package/src/classes/Subject/Subject.ts +0 -26
  18. package/src/classes/Subject/index.ts +0 -1
  19. package/src/classes/TableEventBus/TableEventBus.ts +0 -14
  20. package/src/classes/TableEventBus/index.ts +0 -1
  21. package/src/classes/abstracts/EventBusAbstract/EventBusAbstract.ts +0 -37
  22. package/src/classes/abstracts/EventBusAbstract/index.ts +0 -1
  23. package/src/classes/abstracts/FilterAbstract/FilterAbstract.ts +0 -54
  24. package/src/classes/abstracts/FilterAbstract/index.ts +0 -1
  25. package/src/classes/abstracts/SubscribableAbstract/SubscribableAbstract.ts +0 -20
  26. package/src/classes/abstracts/SubscribableAbstract/index.ts +0 -1
  27. package/src/classes/errors/UploadError.ts +0 -11
  28. package/src/classes/errors/index.ts +0 -1
  29. package/src/classes/filters/BooleanFilter.ts +0 -31
  30. package/src/classes/filters/DateFilter.ts +0 -133
  31. package/src/classes/filters/GeoFilter.ts +0 -60
  32. package/src/classes/filters/MultiSelectFilter.ts +0 -70
  33. package/src/classes/filters/NumberRangeFilter.ts +0 -82
  34. package/src/classes/filters/SelectionFilter.ts +0 -25
  35. package/src/classes/filters/TextFilter.ts +0 -36
  36. package/src/classes/filters/TreeFilter.ts +0 -22
  37. package/src/classes/managers/AuthenticationManager/AuthenticationManager.ts +0 -94
  38. package/src/classes/managers/AuthenticationManager/index.ts +0 -1
  39. package/src/classes/managers/AuthorizationManager/AuthorizationManager.ts +0 -70
  40. package/src/classes/managers/AuthorizationManager/index.ts +0 -1
  41. package/src/classes/managers/BackendVersionManager/BackendVersionManager.ts +0 -23
  42. package/src/classes/managers/BackendVersionManager/index.ts +0 -1
  43. package/src/classes/managers/BreadcrumbManager/BreadcrumbManager.ts +0 -30
  44. package/src/classes/managers/BreadcrumbManager/index.ts +0 -1
  45. package/src/classes/managers/ConfigManager/ConfigManager.ts +0 -31
  46. package/src/classes/managers/ConfigManager/index.ts +0 -1
  47. package/src/classes/managers/DevicePixelRatioManager/DevicePixelRatioManager.ts +0 -27
  48. package/src/classes/managers/DevicePixelRatioManager/index.ts +0 -1
  49. package/src/classes/managers/EmotionCacheManager/EmotionCacheManager.ts +0 -27
  50. package/src/classes/managers/EmotionCacheManager/index.ts +0 -1
  51. package/src/classes/managers/EpiDataManager/EpiDataManager.ts +0 -196
  52. package/src/classes/managers/EpiDataManager/index.ts +0 -1
  53. package/src/classes/managers/EpiEventBusManager/EpiEventBusManager.ts +0 -61
  54. package/src/classes/managers/EpiEventBusManager/index.ts +0 -1
  55. package/src/classes/managers/EpiHighlightingManager/EpiHighlightingManager.ts +0 -32
  56. package/src/classes/managers/EpiHighlightingManager/index.ts +0 -1
  57. package/src/classes/managers/EpiLineListCaseSetMembersManager/EpiListsCaseSetMembersManager.ts +0 -118
  58. package/src/classes/managers/EpiLineListCaseSetMembersManager/index.ts +0 -1
  59. package/src/classes/managers/FeatureFlagsManager/FeatureFlagsManager.ts +0 -30
  60. package/src/classes/managers/FeatureFlagsManager/index.ts +0 -1
  61. package/src/classes/managers/I18nManager/I18nManager.ts +0 -105
  62. package/src/classes/managers/I18nManager/index.ts +0 -1
  63. package/src/classes/managers/InactivityManager/InactivityManager.ts +0 -119
  64. package/src/classes/managers/InactivityManager/index.ts +0 -1
  65. package/src/classes/managers/KeyboardShortcutManager/KeyboardShortcutManager.ts +0 -78
  66. package/src/classes/managers/KeyboardShortcutManager/index.ts +0 -1
  67. package/src/classes/managers/LogManager/LogManager.ts +0 -151
  68. package/src/classes/managers/LogManager/index.ts +0 -1
  69. package/src/classes/managers/NavigationHistoryManager/NavigationHistoryManager.ts +0 -16
  70. package/src/classes/managers/NavigationHistoryManager/index.ts +0 -1
  71. package/src/classes/managers/NotificationManager/NotificationManager.ts +0 -104
  72. package/src/classes/managers/NotificationManager/index.ts +0 -1
  73. package/src/classes/managers/PageEventBusManager/PageEventBusManager.ts +0 -116
  74. package/src/classes/managers/PageEventBusManager/index.ts +0 -1
  75. package/src/classes/managers/QueryClientManager/QueryClientManager.ts +0 -51
  76. package/src/classes/managers/QueryClientManager/index.ts +0 -1
  77. package/src/classes/managers/RouterManager/RouterManager.ts +0 -25
  78. package/src/classes/managers/RouterManager/index.ts +0 -1
  79. package/src/classes/managers/UserSettingsManager/UserSettingsManager.ts +0 -16
  80. package/src/classes/managers/UserSettingsManager/index.ts +0 -1
  81. package/src/classes/managers/WindowManager/WindowManager.test.ts +0 -23
  82. package/src/classes/managers/WindowManager/WindowManager.ts +0 -26
  83. package/src/classes/managers/WindowManager/index.ts +0 -1
  84. package/src/components/app/App/App.tsx +0 -58
  85. package/src/components/app/App/index.ts +0 -1
  86. package/src/components/app/ApplicationBootstrap/ApplicationBootstrap.tsx +0 -223
  87. package/src/components/app/ApplicationBootstrap/index.ts +0 -1
  88. package/src/components/app/RouterRoot/RouterRoot.tsx +0 -187
  89. package/src/components/app/RouterRoot/index.ts +0 -1
  90. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialog.tsx +0 -347
  91. package/src/components/epi/EpiAddCasesToEventDialog/EpiAddCasesToEventDialogSuccessNotificationMessage.tsx +0 -38
  92. package/src/components/epi/EpiAddCasesToEventDialog/index.ts +0 -1
  93. package/src/components/epi/EpiBulkEditCaseDialog/EpiBulkEditCaseDialog.tsx +0 -61
  94. package/src/components/epi/EpiBulkEditCaseDialog/index.ts +0 -1
  95. package/src/components/epi/EpiCaseInfoDialog/EpiCaseCaseSetInfo.tsx +0 -137
  96. package/src/components/epi/EpiCaseInfoDialog/EpiCaseContent.tsx +0 -127
  97. package/src/components/epi/EpiCaseInfoDialog/EpiCaseForm.tsx +0 -111
  98. package/src/components/epi/EpiCaseInfoDialog/EpiCaseInfoDialog.tsx +0 -377
  99. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingForm.tsx +0 -140
  100. package/src/components/epi/EpiCaseInfoDialog/EpiCaseSharingInfo.tsx +0 -23
  101. package/src/components/epi/EpiCaseInfoDialog/EpiReadOnlyCaseContent.tsx +0 -89
  102. package/src/components/epi/EpiCaseInfoDialog/index.ts +0 -1
  103. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetContent.tsx +0 -108
  104. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetDescription.tsx +0 -34
  105. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetForm.tsx +0 -151
  106. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetInfoDialog.tsx +0 -389
  107. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingForm.tsx +0 -155
  108. package/src/components/epi/EpiCaseSetInfoDialog/EpiCaseSetSharingInfo.tsx +0 -23
  109. package/src/components/epi/EpiCaseSetInfoDialog/index.ts +0 -1
  110. package/src/components/epi/EpiCaseSummary/EpiCaseSummary.tsx +0 -141
  111. package/src/components/epi/EpiCaseSummary/index.ts +0 -1
  112. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoAccessRights.tsx +0 -91
  113. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoColAccessRights.tsx +0 -118
  114. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoData.tsx +0 -38
  115. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialog.tsx +0 -39
  116. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogContent.tsx +0 -169
  117. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoDialogWithLoader.tsx +0 -42
  118. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoRegions.tsx +0 -87
  119. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoTrees.tsx +0 -73
  120. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoValues.tsx +0 -61
  121. package/src/components/epi/EpiCaseTypeInfoDialog/EpiCaseTypeInfoVariableDetails.tsx +0 -151
  122. package/src/components/epi/EpiCaseTypeInfoDialog/index.ts +0 -10
  123. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarning.tsx +0 -190
  124. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/EpiCasesAlreadyInCaseSetWarningCaseSetLink.tsx +0 -62
  125. package/src/components/epi/EpiCasesAlreadyInCaseSetWarning/index.ts +0 -1
  126. package/src/components/epi/EpiCompletCaseTypeLoader/EpiCompletCaseTypeLoader.tsx +0 -87
  127. package/src/components/epi/EpiCompletCaseTypeLoader/index.ts +0 -1
  128. package/src/components/epi/EpiContactDetailsDialog/EpiContactDetailsDialog.tsx +0 -151
  129. package/src/components/epi/EpiContactDetailsDialog/index.ts +0 -1
  130. package/src/components/epi/EpiContextMenu/EpiContextMenu.tsx +0 -155
  131. package/src/components/epi/EpiContextMenu/index.ts +0 -1
  132. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialog.tsx +0 -386
  133. package/src/components/epi/EpiCreateEventDialog/EpiCreateEventDialogSuccessNotificationMessage.tsx +0 -30
  134. package/src/components/epi/EpiCreateEventDialog/index.ts +0 -1
  135. package/src/components/epi/EpiCurve/EpiCurve.tsx +0 -525
  136. package/src/components/epi/EpiCurve/index.ts +0 -1
  137. package/src/components/epi/EpiCustomTabPanel/EpiCustomTabPanel.tsx +0 -27
  138. package/src/components/epi/EpiCustomTabPanel/index.ts +0 -1
  139. package/src/components/epi/EpiDashboard/EpiDashboard.tsx +0 -390
  140. package/src/components/epi/EpiDashboard/EpiDashboardDownloadSidebarItem.tsx +0 -154
  141. package/src/components/epi/EpiDashboard/EpiDashboardGeneralSettingsForm.tsx +0 -89
  142. package/src/components/epi/EpiDashboard/EpiDashboardLayoutRenderer.tsx +0 -248
  143. package/src/components/epi/EpiDashboard/EpiDashboardLayoutSettingsForm.tsx +0 -160
  144. package/src/components/epi/EpiDashboard/EpiDashboardSettingsSidebarItem.tsx +0 -93
  145. package/src/components/epi/EpiDashboard/EpiDashboardTreeSettingsForm.tsx +0 -90
  146. package/src/components/epi/EpiDashboard/index.ts +0 -1
  147. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoader.tsx +0 -34
  148. package/src/components/epi/EpiDashboardStoreLoader/EpiDashboardStoreLoaderContent.tsx +0 -73
  149. package/src/components/epi/EpiDashboardStoreLoader/index.ts +0 -2
  150. package/src/components/epi/EpiDashboardStoreLoader/withEpiDashboardStore.tsx +0 -19
  151. package/src/components/epi/EpiDataCollectionAccessInfo/EpiDataCollectionAccessInfo.tsx +0 -88
  152. package/src/components/epi/EpiDataCollectionAccessInfo/index.ts +0 -1
  153. package/src/components/epi/EpiFindSimilarCasesDialog/EpiFindSimilarCasesDialog.tsx +0 -302
  154. package/src/components/epi/EpiFindSimilarCasesDialog/index.ts +0 -1
  155. package/src/components/epi/EpiLegendaItem/EpiLegendaItem.tsx +0 -106
  156. package/src/components/epi/EpiLegendaItem/index.ts +0 -1
  157. package/src/components/epi/EpiLineList/EpiLineList.tsx +0 -492
  158. package/src/components/epi/EpiLineList/EpiLineListPrimaryMenu.tsx +0 -189
  159. package/src/components/epi/EpiLineList/EpiLineListSecondaryMenu.tsx +0 -56
  160. package/src/components/epi/EpiLineList/EpiLineListTitle.tsx +0 -28
  161. package/src/components/epi/EpiLineList/index.ts +0 -1
  162. package/src/components/epi/EpiLineList/useEpiLineListEmitDownloadOptions.tsx +0 -102
  163. package/src/components/epi/EpiMap/EpiMap.tsx +0 -547
  164. package/src/components/epi/EpiMap/index.ts +0 -1
  165. package/src/components/epi/EpiRemoveCasesFromEventDialog/EpiRemoveCasesFromEventDialog.tsx +0 -169
  166. package/src/components/epi/EpiRemoveCasesFromEventDialog/index.ts +0 -1
  167. package/src/components/epi/EpiRemoveFindSimilarCasesResultDialog/EpiRemoveFindSimilarCasesResultDialog.tsx +0 -216
  168. package/src/components/epi/EpiSequenceDownloadDialog/EpiSequenceDownloadDialog.tsx +0 -151
  169. package/src/components/epi/EpiSequenceDownloadDialog/index.ts +0 -1
  170. package/src/components/epi/EpiStratification/EpiStratification.tsx +0 -241
  171. package/src/components/epi/EpiStratification/index.ts +0 -1
  172. package/src/components/epi/EpiTree/EpiTree.tsx +0 -906
  173. package/src/components/epi/EpiTree/index.ts +0 -1
  174. package/src/components/epi/EpiTreeDescription/EpiTreeDescription.tsx +0 -71
  175. package/src/components/epi/EpiTreeDescription/index.ts +0 -1
  176. package/src/components/epi/EpiUpload/EpiUpload.tsx +0 -107
  177. package/src/components/epi/EpiUpload/EpiUploadCaseResultTable.tsx +0 -383
  178. package/src/components/epi/EpiUpload/EpiUploadCreateCases.tsx +0 -266
  179. package/src/components/epi/EpiUpload/EpiUploadMapColumns.tsx +0 -261
  180. package/src/components/epi/EpiUpload/EpiUploadMapSequences.tsx +0 -332
  181. package/src/components/epi/EpiUpload/EpiUploadNavigation.tsx +0 -52
  182. package/src/components/epi/EpiUpload/EpiUploadSelectFile.tsx +0 -285
  183. package/src/components/epi/EpiUpload/EpiUploadSelectSequenceFiles.tsx +0 -375
  184. package/src/components/epi/EpiUpload/EpiUploadValidate.tsx +0 -199
  185. package/src/components/epi/EpiUpload/EpiUploadValidateNavigation.tsx +0 -34
  186. package/src/components/epi/EpiUpload/index.ts +0 -1
  187. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialog.tsx +0 -101
  188. package/src/components/epi/EpiUserRightsDialog/EpiUserRightsDialogCaseAccessPolicy.tsx +0 -160
  189. package/src/components/epi/EpiUserRightsDialog/index.ts +0 -1
  190. package/src/components/epi/EpiWarning/EpiWarning.tsx +0 -39
  191. package/src/components/epi/EpiWarning/index.ts +0 -1
  192. package/src/components/epi/EpiWidget/EpiWidget.tsx +0 -255
  193. package/src/components/epi/EpiWidget/index.ts +0 -1
  194. package/src/components/epi/EpiWidgetHeaderIconButton/EpiWidgetHeaderIconButton.tsx +0 -40
  195. package/src/components/epi/EpiWidgetHeaderIconButton/index.ts +0 -1
  196. package/src/components/epi/EpiWidgetMenu/EpiWidgetMenu.tsx +0 -56
  197. package/src/components/epi/EpiWidgetMenu/index.ts +0 -1
  198. package/src/components/epi/EpiWidgetUnavailable/EpiWidgetUnavailable.tsx +0 -51
  199. package/src/components/epi/EpiWidgetUnavailable/index.ts +0 -1
  200. package/src/components/filters/BooleanFilterField/BooleanFilterField.tsx +0 -26
  201. package/src/components/filters/BooleanFilterField/index.ts +0 -1
  202. package/src/components/filters/DateFilterField/DateFilterField.tsx +0 -23
  203. package/src/components/filters/DateFilterField/index.ts +0 -1
  204. package/src/components/filters/GeoFilterField/GeoFilterField.tsx +0 -32
  205. package/src/components/filters/GeoFilterField/index.ts +0 -1
  206. package/src/components/filters/MultiSelectFilterField/MultiSelectFilterField.tsx +0 -31
  207. package/src/components/filters/MultiSelectFilterField/index.ts +0 -1
  208. package/src/components/filters/NumberRangeFilterField/NumberRangeFilterField.tsx +0 -20
  209. package/src/components/filters/NumberRangeFilterField/index.ts +0 -1
  210. package/src/components/filters/TextFilterField/TextFilterField.tsx +0 -18
  211. package/src/components/filters/TextFilterField/index.ts +0 -1
  212. package/src/components/form/fields/Autocomplete/Autocomplete.tsx +0 -270
  213. package/src/components/form/fields/Autocomplete/index.ts +0 -1
  214. package/src/components/form/fields/CheckboxGroup/CheckboxGroup.tsx +0 -192
  215. package/src/components/form/fields/CheckboxGroup/index.ts +0 -1
  216. package/src/components/form/fields/DatePicker/DatePicker.tsx +0 -167
  217. package/src/components/form/fields/DatePicker/index.ts +0 -1
  218. package/src/components/form/fields/DateRangePicker/DateRangePicker.tsx +0 -359
  219. package/src/components/form/fields/DateRangePicker/index.ts +0 -1
  220. package/src/components/form/fields/NumberField/NumberField.tsx +0 -277
  221. package/src/components/form/fields/NumberField/index.ts +0 -1
  222. package/src/components/form/fields/NumberRangeInput/NumberRangeInput.tsx +0 -297
  223. package/src/components/form/fields/NumberRangeInput/index.ts +0 -1
  224. package/src/components/form/fields/RadioGroup/RadioGroup.tsx +0 -130
  225. package/src/components/form/fields/RadioGroup/index.ts +0 -1
  226. package/src/components/form/fields/RichTextEditor/RichTextEditor.tsx +0 -321
  227. package/src/components/form/fields/RichTextEditor/RichTextEditorContent.tsx +0 -34
  228. package/src/components/form/fields/RichTextEditor/index.ts +0 -2
  229. package/src/components/form/fields/RichTextEditor/useRichTextEditorExtensions.ts +0 -174
  230. package/src/components/form/fields/Select/Select.tsx +0 -219
  231. package/src/components/form/fields/Select/index.ts +0 -1
  232. package/src/components/form/fields/Switch/Switch.tsx +0 -116
  233. package/src/components/form/fields/Switch/index.ts +0 -1
  234. package/src/components/form/fields/TextField/TextField.tsx +0 -170
  235. package/src/components/form/fields/TextField/index.ts +0 -1
  236. package/src/components/form/fields/ToggleButtonGroup/ToggleButtonGroup.tsx +0 -118
  237. package/src/components/form/fields/ToggleButtonGroup/index.ts +0 -1
  238. package/src/components/form/fields/TransferList/TransferList.tsx +0 -360
  239. package/src/components/form/fields/TransferList/index.ts +0 -1
  240. package/src/components/form/fields/UploadButton/UploadButton.tsx +0 -157
  241. package/src/components/form/helpers/FormFieldHelperText/FormFieldHelperText.tsx +0 -68
  242. package/src/components/form/helpers/FormFieldHelperText/index.ts +0 -1
  243. package/src/components/form/helpers/FormFieldLoadingIndicator/FormFieldLoadingIndicator.tsx +0 -22
  244. package/src/components/form/helpers/FormFieldLoadingIndicator/index.ts +0 -1
  245. package/src/components/form/helpers/GenericForm/GenericForm.tsx +0 -187
  246. package/src/components/form/helpers/GenericForm/index.ts +0 -1
  247. package/src/components/ui/ApplicationBar/ApplicationBar.tsx +0 -74
  248. package/src/components/ui/ApplicationBar/ApplicationBarActions.tsx +0 -124
  249. package/src/components/ui/ApplicationBar/ApplicationBarActionsFeedbackItem.tsx +0 -102
  250. package/src/components/ui/ApplicationBar/ApplicationBarActionsInfotem.tsx +0 -60
  251. package/src/components/ui/ApplicationBar/ApplicationBarActionsNotificationsItem.tsx +0 -82
  252. package/src/components/ui/ApplicationBar/ApplicationBarActionsOrganizationSwitcherItem.tsx +0 -58
  253. package/src/components/ui/ApplicationBar/ApplicationBarActionsOutagesItem.tsx +0 -75
  254. package/src/components/ui/ApplicationBar/ApplicationBarActionsUserItem.tsx +0 -60
  255. package/src/components/ui/ApplicationBar/ApplicationBarNavigationMenu.tsx +0 -159
  256. package/src/components/ui/ApplicationBar/InfoMenu.tsx +0 -120
  257. package/src/components/ui/ApplicationBar/UserMenu.tsx +0 -208
  258. package/src/components/ui/ApplicationBar/UserOrganizationAdminMenuItem.tsx +0 -69
  259. package/src/components/ui/ApplicationBar/UserOwnOrganizationMenuItem.tsx +0 -54
  260. package/src/components/ui/ApplicationBar/index.ts +0 -1
  261. package/src/components/ui/ApplicationFooter/ApplicationFooter.tsx +0 -121
  262. package/src/components/ui/ApplicationFooter/ApplicationFooterLink.tsx +0 -48
  263. package/src/components/ui/ApplicationFooter/ApplicationFooterLinkSection.tsx +0 -56
  264. package/src/components/ui/ApplicationFooter/index.ts +0 -1
  265. package/src/components/ui/AuthenticationWrapper/AuthenticationWrapper.tsx +0 -208
  266. package/src/components/ui/AuthenticationWrapper/index.ts +0 -1
  267. package/src/components/ui/AuthorizationWrapper/AuthorizationWrapper.tsx +0 -75
  268. package/src/components/ui/AuthorizationWrapper/index.ts +0 -1
  269. package/src/components/ui/Breadcrumbs/Breadcrumbs.tsx +0 -92
  270. package/src/components/ui/Breadcrumbs/index.ts +0 -1
  271. package/src/components/ui/Confirmation/Confirmation.tsx +0 -10
  272. package/src/components/ui/Confirmation/ConfirmationRender.tsx +0 -81
  273. package/src/components/ui/Confirmation/index.ts +0 -2
  274. package/src/components/ui/ConsentDialog/ConsentDialog.tsx +0 -57
  275. package/src/components/ui/ConsentDialog/index.ts +0 -1
  276. package/src/components/ui/CopyToClipboardButton/CopyToClipboardButton.tsx +0 -94
  277. package/src/components/ui/CopyToClipboardButton/index.ts +0 -1
  278. package/src/components/ui/Dialog/Dialog.tsx +0 -196
  279. package/src/components/ui/Dialog/index.ts +0 -1
  280. package/src/components/ui/FileSelector/FileSelector.tsx +0 -358
  281. package/src/components/ui/FileSelector/index.ts +0 -1
  282. package/src/components/ui/GenericErrorMessage/GenericErrorMessage.tsx +0 -168
  283. package/src/components/ui/GenericErrorMessage/index.ts +0 -1
  284. package/src/components/ui/HomePageTrends/HomePageTrendCard.tsx +0 -132
  285. package/src/components/ui/HomePageTrends/HomePageTrends.tsx +0 -312
  286. package/src/components/ui/HomePageTrends/index.ts +0 -1
  287. package/src/components/ui/LicensesDialog/LicensesDialog.tsx +0 -231
  288. package/src/components/ui/LicensesDialog/index.ts +0 -1
  289. package/src/components/ui/LinearProgressWithLabel/LinearProgressWithLabel.tsx +0 -31
  290. package/src/components/ui/LinearProgressWithLabel/index.ts +0 -1
  291. package/src/components/ui/LoadingIndicator/LoadingIndicator.tsx +0 -11
  292. package/src/components/ui/LoadingIndicator/index.ts +0 -1
  293. package/src/components/ui/MyPermissionsDialog/MyPermissionsDialog.tsx +0 -95
  294. package/src/components/ui/MyPermissionsDialog/index.ts +0 -1
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  605. package/src/pages/RegionsAdminPage/index.ts +0 -1
  606. package/src/pages/RouterErrorPage/RouterErrorPage.tsx +0 -23
  607. package/src/pages/RouterErrorPage/index.ts +0 -1
  608. package/src/pages/TrendsPage/TrendsPage.tsx +0 -17
  609. package/src/pages/TrendsPage/index.ts +0 -1
  610. package/src/pages/UploadPage/UploadPage.tsx +0 -40
  611. package/src/pages/UploadPage/index.ts +0 -1
  612. package/src/pages/UserAccessCasePoliciesAdminPage/UserAccessCasePoliciesAdminPage.tsx +0 -209
  613. package/src/pages/UserAccessCasePoliciesAdminPage/index.ts +0 -1
  614. package/src/pages/UserEffectiveRightsAdminPage/UserEffectiveRightsAdminPage.tsx +0 -331
  615. package/src/pages/UserEffectiveRightsAdminPage/index.ts +0 -1
  616. package/src/pages/UserEffectiveRightsTesterAdminPage/UserEffectiveRightsTesterAdminPage.tsx +0 -283
  617. package/src/pages/UserEffectiveRightsTesterAdminPage/index.ts +0 -1
  618. package/src/pages/UserInvitationsAdminPage/UserInvitationConsumeDialog.tsx +0 -143
  619. package/src/pages/UserInvitationsAdminPage/UserInvitationShareDialog.tsx +0 -100
  620. package/src/pages/UserInvitationsAdminPage/UserInvitationsAdminPage.tsx +0 -218
  621. package/src/pages/UserInvitationsAdminPage/index.ts +0 -1
  622. package/src/pages/UserShareCasePoliciesAdminPage/UserShareCasePoliciesAdminPage.tsx +0 -183
  623. package/src/pages/UserShareCasePoliciesAdminPage/index.ts +0 -1
  624. package/src/pages/UsersAdminPage/UsersAdminPage.tsx +0 -240
  625. package/src/pages/UsersAdminPage/index.ts +0 -1
  626. package/src/routes/adminRoutes.tsx +0 -801
  627. package/src/routes/index.ts +0 -2
  628. package/src/routes/routes.tsx +0 -235
  629. package/src/setup/index.ts +0 -1
  630. package/src/setup/setup.ts +0 -5
  631. package/src/setup/yup.ts +0 -203
  632. package/src/stores/epiDashboardStore/epiDashboardStore.ts +0 -750
  633. package/src/stores/epiDashboardStore/epiDashboardStoreContext.tsx +0 -6
  634. package/src/stores/epiDashboardStore/index.ts +0 -2
  635. package/src/stores/epiUploadStore/epiUploadStore.ts +0 -351
  636. package/src/stores/epiUploadStore/epiUploadStoreContext.tsx +0 -6
  637. package/src/stores/epiUploadStore/index.ts +0 -2
  638. package/src/stores/oidcStore/index.ts +0 -1
  639. package/src/stores/oidcStore/oidcStore.ts +0 -43
  640. package/src/stores/outagesStore/index.ts +0 -1
  641. package/src/stores/outagesStore/outagesStore.ts +0 -31
  642. package/src/stores/tableStore/TableStoreContext.tsx +0 -6
  643. package/src/stores/tableStore/TableStoreContextProvider.tsx +0 -20
  644. package/src/stores/tableStore/index.ts +0 -4
  645. package/src/stores/tableStore/tableStore.ts +0 -547
  646. package/src/stores/tableStore/useTableStoreContext.tsx +0 -7
  647. package/src/stores/userProfileStore/index.ts +0 -1
  648. package/src/stores/userProfileStore/userProfileStore.ts +0 -112
  649. package/src/test/integration/lib/render.tsx +0 -33
  650. package/src/test/integration/tests/integration-example/HelloWorld.test.tsx +0 -14
  651. package/src/test/integration/tests/integration-example/HelloWorld.tsx +0 -9
  652. package/src/test/setup-browser.ts +0 -3
  653. package/src/test/setup-jsdom.ts +0 -6
  654. package/src/test/setup.ts +0 -9
  655. package/src/utils/AbacUtil/AbacUtil.ts +0 -21
  656. package/src/utils/AbacUtil/index.ts +0 -1
  657. package/src/utils/AxiosUtil/AxiosUtil.test.ts +0 -66
  658. package/src/utils/AxiosUtil/AxiosUtil.ts +0 -47
  659. package/src/utils/AxiosUtil/index.ts +0 -1
  660. package/src/utils/CaseSelectionUtil/CaseSelectionUtil.ts +0 -32
  661. package/src/utils/CaseSelectionUtil/index.ts +0 -1
  662. package/src/utils/CaseSetUtil/CaseSetUtil.ts +0 -13
  663. package/src/utils/CaseSetUtil/index.ts +0 -1
  664. package/src/utils/CaseTypeUtil/CaseTypeUtil.ts +0 -178
  665. package/src/utils/CaseTypeUtil/index.ts +0 -1
  666. package/src/utils/CaseUtil/CaseUtil.ts +0 -401
  667. package/src/utils/CaseUtil/index.ts +0 -1
  668. package/src/utils/DashboardUtil/DashboardUtil.ts +0 -46
  669. package/src/utils/DashboardUtil/index.ts +0 -1
  670. package/src/utils/DataHookUtil/DataHookUtil.ts +0 -137
  671. package/src/utils/DataHookUtil/index.ts +0 -1
  672. package/src/utils/DataSetUtil/DataSetUtil.ts +0 -70
  673. package/src/utils/DataSetUtil/index.ts +0 -1
  674. package/src/utils/DataUtil/DataUtil.ts +0 -84
  675. package/src/utils/DataUtil/index.ts +0 -1
  676. package/src/utils/DownloadUtil/DownloadUtil.ts +0 -237
  677. package/src/utils/DownloadUtil/index.ts +0 -1
  678. package/src/utils/EffectiveRightsUtil/EffectiveRightsUtil.ts +0 -142
  679. package/src/utils/EffectiveRightsUtil/index.ts +0 -1
  680. package/src/utils/EpiCurveUtil/EpiCurveUtil.ts +0 -180
  681. package/src/utils/EpiCurveUtil/index.ts +0 -1
  682. package/src/utils/EpiFilterUtil/EpiFilterUtil.ts +0 -232
  683. package/src/utils/EpiFilterUtil/index.ts +0 -1
  684. package/src/utils/EpiLineListUtil/EpiLineListUtil.ts +0 -15
  685. package/src/utils/EpiLineListUtil/index.ts +0 -1
  686. package/src/utils/EpiMapUtil/EpiMapUtil.test.ts +0 -54
  687. package/src/utils/EpiMapUtil/EpiMapUtil.ts +0 -80
  688. package/src/utils/EpiMapUtil/index.ts +0 -1
  689. package/src/utils/EpiTreeUtil/EpiTreeUtil.test.ts +0 -2467
  690. package/src/utils/EpiTreeUtil/EpiTreeUtil.ts +0 -1055
  691. package/src/utils/EpiTreeUtil/index.ts +0 -1
  692. package/src/utils/EpiUploadUtil/EpiUploadUtil.ts +0 -857
  693. package/src/utils/EpiUploadUtil/index.ts +0 -1
  694. package/src/utils/FileUtil/FileUtil.ts +0 -22
  695. package/src/utils/FileUtil/index.ts +0 -1
  696. package/src/utils/FormUtil/FormUtil.test.ts +0 -36
  697. package/src/utils/FormUtil/FormUtil.ts +0 -63
  698. package/src/utils/FormUtil/index.ts +0 -1
  699. package/src/utils/MenuDataUtil/MenuDataUtil.ts +0 -54
  700. package/src/utils/MenuDataUtil/index.ts +0 -1
  701. package/src/utils/NewickUtil/NewickUtil.test.ts +0 -187
  702. package/src/utils/NewickUtil/NewickUtil.ts +0 -69
  703. package/src/utils/NewickUtil/index.ts +0 -1
  704. package/src/utils/NotificationUtil/NotificationUtil.ts +0 -28
  705. package/src/utils/NotificationUtil/index.ts +0 -1
  706. package/src/utils/NumberUtil/NumberUtil.test.ts +0 -113
  707. package/src/utils/NumberUtil/NumberUtil.ts +0 -67
  708. package/src/utils/NumberUtil/index.ts +0 -1
  709. package/src/utils/ObjectUtil/ObjectUtil.test.ts +0 -43
  710. package/src/utils/ObjectUtil/ObjectUtil.ts +0 -28
  711. package/src/utils/ObjectUtil/index.ts +0 -1
  712. package/src/utils/OutageUtil/OutageUtil.test.ts +0 -108
  713. package/src/utils/OutageUtil/OutageUtil.ts +0 -81
  714. package/src/utils/OutageUtil/index.ts +0 -1
  715. package/src/utils/QueryUtil/QueryUtil.test.ts +0 -42
  716. package/src/utils/QueryUtil/QueryUtil.ts +0 -105
  717. package/src/utils/QueryUtil/index.ts +0 -1
  718. package/src/utils/StringUtil/StringUtil.test.ts +0 -61
  719. package/src/utils/StringUtil/StringUtil.ts +0 -91
  720. package/src/utils/StringUtil/index.ts +0 -1
  721. package/src/utils/TableUtil/TableUtil.ts +0 -665
  722. package/src/utils/TableUtil/index.ts +0 -1
  723. package/src/utils/TestIdUtil/TestIdUtil.test.ts +0 -12
  724. package/src/utils/TestIdUtil/TestIdUtil.ts +0 -13
  725. package/src/utils/TestIdUtil/index.ts +0 -1
  726. package/src/utils/TimeUtil/TimeUtil.ts +0 -38
  727. package/src/utils/TimeUtil/index.ts +0 -1
  728. package/src/utils/UserManagerUtil/UserManagerUtil.test.ts +0 -41
  729. package/src/utils/UserManagerUtil/UserManagerUtil.ts +0 -39
  730. package/src/utils/UserManagerUtil/index.ts +0 -1
  731. package/src/utils/ValidationUtil/ValidationUtil.test.ts +0 -61
  732. package/src/utils/ValidationUtil/ValidationUtil.ts +0 -56
  733. package/src/utils/ValidationUtil/index.ts +0 -1
  734. /package/{src → dist}/locale/en.json +0 -0
  735. /package/{src → dist}/locale/nl.json +0 -0
  736. /package/{src/@types → dist}/mui.d.ts +0 -0
  737. /package/{src/@types → dist}/ui.d.ts +0 -0
  738. /package/{src/@types → dist}/vite-env.d.ts +0 -0
  739. /package/{src/@types → dist}/yup.d.ts +0 -0
@@ -1,750 +0,0 @@
1
- import { createStore } from 'zustand';
2
- import { produce } from 'immer';
3
- import { t } from 'i18next';
4
- import difference from 'lodash/difference';
5
- import uniqBy from 'lodash/uniqBy';
6
- import uniq from 'lodash/uniq';
7
- import last from 'lodash/last';
8
- import { persist } from 'zustand/middleware';
9
-
10
- import type {
11
- CreateTableStoreKwArgs,
12
- CreateTableStoreInitialStateKwArgs,
13
- TableStoreActions,
14
- TableStoreState,
15
- } from '../tableStore';
16
- import {
17
- createTableStoreInitialState,
18
- createTableStoreActions,
19
- createTableStorePersistConfiguration,
20
- } from '../tableStore';
21
- import type {
22
- Col,
23
- Case,
24
- CompleteCaseType,
25
- PhylogeneticTree,
26
- TypedCompositeFilter,
27
- CaseQuery,
28
- CaseQueryResult,
29
- } from '../../api';
30
- import {
31
- ColType,
32
- CaseApi,
33
- } from '../../api';
34
- import { FILTER_MODE } from '../../classes/abstracts/FilterAbstract';
35
- import { SelectionFilter } from '../../classes/filters/SelectionFilter';
36
- import { TreeFilter } from '../../classes/filters/TreeFilter';
37
- import { ConfigManager } from '../../classes/managers/ConfigManager';
38
- import { EpiHighlightingManager } from '../../classes/managers/EpiHighlightingManager';
39
- import { NotificationManager } from '../../classes/managers/NotificationManager';
40
- import { QueryClientManager } from '../../classes/managers/QueryClientManager';
41
- import type {
42
- TreeConfiguration,
43
- EPI_ZONE,
44
- Stratification,
45
- CaseTypeRowValue,
46
- StratificationLegendaItem,
47
- FindSimilarCasesResult,
48
- } from '../../models/epi';
49
- import {
50
- STRATIFICATION_MODE,
51
- STRATIFICATION_SELECTED,
52
- } from '../../models/epi';
53
- import type { FilterValues } from '../../models/filter';
54
- import { QUERY_KEY } from '../../models/query';
55
- import type { TreeNode } from '../../models/tree';
56
- import { AxiosUtil } from '../../utils/AxiosUtil';
57
- import {
58
- SELECTION_FILTER_GROUP,
59
- TREE_FILTER_GROUP,
60
- CaseTypeUtil,
61
- } from '../../utils/CaseTypeUtil';
62
- import { CaseUtil } from '../../utils/CaseUtil';
63
- import { EpiFilterUtil } from '../../utils/EpiFilterUtil';
64
- import { NewickUtil } from '../../utils/NewickUtil';
65
- import { EpiTreeUtil } from '../../utils/EpiTreeUtil';
66
- import { ObjectUtil } from '../../utils/ObjectUtil';
67
- import { QueryUtil } from '../../utils/QueryUtil';
68
- import { EpiDataManager } from '../../classes/managers/EpiDataManager';
69
-
70
- interface WidgetData {
71
- isUnavailable: boolean;
72
- }
73
-
74
- interface StratifiableColumn {
75
- col: Col;
76
- enabled: boolean;
77
- }
78
-
79
- interface EpiTreeWidgetData extends WidgetData {
80
- treeConfiguration: TreeConfiguration;
81
- verticalScrollPosition: number;
82
- horizontalScrollPosition: number;
83
- zoomLevel: number;
84
- }
85
- interface EpiListWidgetData extends WidgetData {
86
- visibleItemItemIndex: number;
87
- }
88
- interface EpiCurveWidgetData extends WidgetData {
89
- dimensionId: string;
90
- columnId: string;
91
- }
92
- interface EpiMapWidgetData extends WidgetData {
93
- dimensionId: string;
94
- columnId: string;
95
- }
96
-
97
- interface EpiDashboardStoreState extends TableStoreState<Case> {
98
- expandedZone: EPI_ZONE;
99
- epiCurveWidgetData: EpiCurveWidgetData;
100
- epiListWidgetData: EpiListWidgetData;
101
- epiMapWidgetData: EpiMapWidgetData;
102
- epiTreeWidgetData: EpiTreeWidgetData;
103
- newick: string;
104
- stratification: Stratification;
105
- tree: TreeNode;
106
- treeResponse: TreeNode;
107
- treeAddresses: {
108
- [key: string]: {
109
- addresses: { [key: string]: string };
110
- algorithmCode: string;
111
- };
112
- };
113
- completeCaseType: CompleteCaseType;
114
- caseSetId: string;
115
- stratifyableColumns: StratifiableColumn[];
116
- numVisibleAttributesInSummary: number;
117
- isMaxResultsExceeded: boolean;
118
- isMaxResultsExceededDismissed: boolean;
119
- findSimilarCasesResults: FindSimilarCasesResult[];
120
- }
121
-
122
- interface EpiDashboardStoreActions extends TableStoreActions<Case> {
123
- expandZone: (zone: EPI_ZONE) => void;
124
- removeTreeFilter: () => Promise<void>;
125
- mutateCachedCase: (caseId: string, item: Case) => void;
126
- setPhylogeneticTreeResponse: (phylogeneticTree: PhylogeneticTree) => void;
127
- stratify: (mode: STRATIFICATION_MODE, col?: Col) => void;
128
- updateEpiCurveWidgetData: (data: Partial<EpiCurveWidgetData>) => void;
129
- updateEpiListWidgetData: (data: Partial<EpiListWidgetData>) => void;
130
- updateEpiMapWidgetData: (data: Partial<EpiMapWidgetData>) => void;
131
- updateEpiTreeWidgetData: (data: Partial<EpiTreeWidgetData>) => void;
132
- addTreeFilter: (nodeId: string) => Promise<void>;
133
- treeFilterStepOut: () => Promise<void>;
134
- destroy: () => void;
135
- resetTreeAddresses: () => void;
136
- setNumVisibleAttributesInSummary: (numVisibleAttributesInSummary: number) => void;
137
- setFindSimilarCasesResults: (findSimilarCasesResults: FindSimilarCasesResult[]) => Promise<void>;
138
-
139
- // Private
140
- reloadStratification: () => void;
141
- reloadTree: () => void;
142
- reloadStratifyableColumns: () => void;
143
- }
144
-
145
- export type EpiDashboardStore = EpiDashboardStoreState & EpiDashboardStoreActions;
146
-
147
- export type CreateEpiDashboardStoreKwArgs = CreateTableStoreKwArgs<Case> & {
148
- completeCaseType: CompleteCaseType;
149
- caseSetId: string;
150
- };
151
-
152
- export interface CreateEpiDashboardStoreInitialStateKwArgs extends CreateTableStoreInitialStateKwArgs<Case> {
153
- completeCaseType: CompleteCaseType;
154
- caseSetId: string;
155
- }
156
-
157
- const rowValueComperator = (a: CaseTypeRowValue, b: CaseTypeRowValue): number => {
158
- if (a.raw === b.raw) {
159
- return 0;
160
- }
161
- if (a.isMissing) {
162
- return 1;
163
- }
164
- if (b.isMissing) {
165
- return -1;
166
- }
167
- return a.short.localeCompare(b.short);
168
- };
169
-
170
- const createWidgetDataInitialState = (): WidgetData => ({
171
- isUnavailable: false,
172
- });
173
-
174
- const createEpiTreeWidgetDataInitialState = (): EpiTreeWidgetData => ({
175
- ...createWidgetDataInitialState(),
176
- treeConfiguration: null,
177
- verticalScrollPosition: 0,
178
- horizontalScrollPosition: 0,
179
- zoomLevel: 1,
180
- });
181
-
182
- const createEpiDashboardStoreInitialState = (kwArgs: CreateEpiDashboardStoreInitialStateKwArgs): EpiDashboardStoreState => {
183
- const { completeCaseType, caseSetId, ...createTableStoreInitialStateKwArgs } = kwArgs;
184
-
185
- return {
186
- ...createTableStoreInitialState<Case>(createTableStoreInitialStateKwArgs),
187
- filteredData: {
188
- [SELECTION_FILTER_GROUP]: [],
189
- [TREE_FILTER_GROUP]: [],
190
- },
191
- stratifyableColumns: [],
192
- frontendFilterPriorities: [SELECTION_FILTER_GROUP, TREE_FILTER_GROUP],
193
- completeCaseType,
194
- caseSetId,
195
- expandedZone: null,
196
- stratification: null,
197
- tree: null,
198
- treeAddresses: {},
199
- newick: null,
200
- treeResponse: null,
201
- findSimilarCasesResults: [],
202
- epiTreeWidgetData: createEpiTreeWidgetDataInitialState(),
203
- epiListWidgetData: {
204
- ...createWidgetDataInitialState(),
205
- visibleItemItemIndex: 0,
206
- },
207
- epiCurveWidgetData: {
208
- ...createWidgetDataInitialState(),
209
- dimensionId: null,
210
- columnId: null,
211
- },
212
- epiMapWidgetData: {
213
- ...createWidgetDataInitialState(),
214
- dimensionId: null,
215
- columnId: null,
216
- },
217
- numVisibleAttributesInSummary: ConfigManager.instance.config.epi.INITIAL_NUM_VISIBLE_ATTRIBUTES_IN_CASE_SUMMARY,
218
- isMaxResultsExceeded: false,
219
- isMaxResultsExceededDismissed: false,
220
- };
221
- };
222
-
223
- export const createEpiDashboardStore = (kwArgs: CreateEpiDashboardStoreKwArgs) => {
224
- const { completeCaseType, caseSetId, ...createTableStoreKwArgs } = kwArgs;
225
-
226
- const epiDashboardStore = createStore<EpiDashboardStore>()(
227
- persist(
228
- (set, get) => {
229
- const initialState = createEpiDashboardStoreInitialState({
230
- caseSetId,
231
- completeCaseType,
232
- ...createTableStoreKwArgs,
233
- });
234
- const tableStoreActions = createTableStoreActions<Case>({
235
- set,
236
- get,
237
- });
238
-
239
- return {
240
- ...initialState,
241
- ...tableStoreActions,
242
- setNumVisibleAttributesInSummary: (numVisibleAttributesInSummary: number) => {
243
- set({ numVisibleAttributesInSummary });
244
- },
245
- resetTreeAddresses: () => {
246
- set({ treeAddresses: {} });
247
- },
248
- addTreeFilter: async (nodeId) => {
249
- const { setFilterValue, filters, resetTreeAddresses } = get();
250
- resetTreeAddresses();
251
- const treeFilter = filters.find(filter => filter instanceof TreeFilter);
252
- await setFilterValue(treeFilter.id, nodeId);
253
- },
254
- treeFilterStepOut: async () => {
255
- const { setFilterValue, filters, treeResponse, resetTreeAddresses } = get();
256
- resetTreeAddresses();
257
- const treeFilter = filters.find(filter => filter instanceof TreeFilter);
258
- const zoomedInTreeNodeName = EpiTreeUtil.findNewTreeRoot(treeResponse, treeFilter?.filterValue, 'parent').name;
259
- await setFilterValue(treeFilter.id, zoomedInTreeNodeName === treeResponse.name ? null : zoomedInTreeNodeName);
260
- },
261
- removeTreeFilter: async () => {
262
- const { setFilterValue, filters, resetTreeAddresses } = get();
263
- const treeFilter = filters.find(filter => filter instanceof TreeFilter);
264
- if (treeFilter.filterValue) {
265
- resetTreeAddresses();
266
- await setFilterValue(treeFilter.id, treeFilter.initialFilterValue);
267
- }
268
- },
269
- setFindSimilarCasesResults: async (findSimilarCasesResults: FindSimilarCasesResult[]) => {
270
- const { filters } = get();
271
- const filterValues: FilterValues = {};
272
- filters.forEach(filter => {
273
- filterValues[filter.id] = filter.filterValue;
274
- });
275
- const treeFilter = filters.find(filter => filter instanceof TreeFilter);
276
- const hasTreeFilter = !treeFilter.isInitialFilterValue(filterValues[treeFilter.id]);
277
- if (hasTreeFilter) {
278
- NotificationManager.instance.showNotification({
279
- message: t`The tree filter has automatically been removed, because it's incompatible with the results of "Find Similar Cases".`,
280
- severity: 'info',
281
- });
282
- await tableStoreActions.setFilterValues({
283
- ...filterValues,
284
- [treeFilter.id]: treeFilter.initialFilterValue,
285
- });
286
- }
287
- set({ findSimilarCasesResults });
288
- await get().fetchData();
289
- },
290
- stratify: (mode, col) => {
291
- const { sortedData, selectedIds } = get();
292
- const caseIdColors: { [key: string]: string } = {};
293
-
294
- const legendaItems: StratificationLegendaItem[] = [];
295
- const legendaItemsByColor: { [key: string]: StratificationLegendaItem } = {};
296
- const legendaItemsByValue: { [key: string]: StratificationLegendaItem } = {};
297
-
298
- const { STRATIFICATION_COLORS, STRATIFICATION_COLOR_ITEM_MISSING } = ConfigManager.instance.config.epi;
299
-
300
- if (mode === STRATIFICATION_MODE.FIELD) {
301
- const column = completeCaseType.ref_cols[col.ref_col_id];
302
- const conceptSetConceptIds = EpiDataManager.instance.data.conceptsIdsBySetId[column.concept_set_id];
303
- if (conceptSetConceptIds) {
304
- if (conceptSetConceptIds.length <= STRATIFICATION_COLORS.length) {
305
- conceptSetConceptIds.map(conceptId => EpiDataManager.instance.data.conceptsById[conceptId]).sort((a, b) => {
306
- if (([
307
- ColType.ORDINAL,
308
- ColType.INTERVAL,
309
- ColType.DECIMAL_0,
310
- ColType.DECIMAL_1,
311
- ColType.DECIMAL_2,
312
- ColType.DECIMAL_3,
313
- ColType.DECIMAL_4,
314
- ColType.DECIMAL_5,
315
- ColType.DECIMAL_6,
316
- ] as ColType[]).includes(column.col_type) && a.rank !== b.rank) {
317
- return a.rank - b.rank;
318
- }
319
- return a.code.localeCompare(b.code);
320
- }).forEach((concept, index) => {
321
- const color = STRATIFICATION_COLORS[index];
322
- const legendaItem: StratificationLegendaItem = {
323
- caseIds: [],
324
- color,
325
- rowValue: {
326
- isMissing: false,
327
- raw: concept.id,
328
- full: `${concept.code} (${concept.name})`,
329
- short: concept.code,
330
- long: concept.name,
331
- },
332
- columnType: column.col_type,
333
- };
334
- legendaItemsByColor[color] = legendaItem;
335
- legendaItemsByValue[concept.id] = legendaItem;
336
- legendaItems.push(legendaItem);
337
- });
338
- const legendaItemMissingData: StratificationLegendaItem = {
339
- caseIds: [],
340
- color: STRATIFICATION_COLOR_ITEM_MISSING,
341
- rowValue: CaseUtil.getMissingRowValue(''),
342
- columnType: column.col_type,
343
- };
344
- legendaItemsByColor[STRATIFICATION_COLOR_ITEM_MISSING] = legendaItemMissingData;
345
- legendaItemsByValue[''] = legendaItemMissingData;
346
- legendaItems.push(legendaItemMissingData);
347
-
348
- sortedData.forEach(row => {
349
- const rowValue = CaseUtil.getRowValue(row.content, col, completeCaseType);
350
- const legendaItem = rowValue.isMissing ? legendaItemMissingData : legendaItemsByValue[rowValue.raw];
351
- legendaItem.caseIds.push(row.id);
352
- caseIdColors[row.id] = legendaItem.color;
353
- });
354
- if (legendaItemMissingData.caseIds.length === 0) {
355
- legendaItems.splice(legendaItems.indexOf(legendaItemMissingData), 1);
356
- delete legendaItemsByColor[STRATIFICATION_COLOR_ITEM_MISSING];
357
- delete legendaItemsByValue[''];
358
- }
359
- } else {
360
- const rowValues = sortedData.map(row => CaseUtil.getRowValue(row.content, col, completeCaseType));
361
- const uniqueRowValues = uniqBy(rowValues, (rowValue => rowValue.raw)).sort((a, b) => {
362
- return rowValueComperator(a, b);
363
- });
364
-
365
- uniqueRowValues.forEach((rowValue, index) => {
366
- const color = rowValue.isMissing ? STRATIFICATION_COLOR_ITEM_MISSING : STRATIFICATION_COLORS[index];
367
- const legendaItem: StratificationLegendaItem = {
368
- caseIds: [],
369
- color,
370
- rowValue,
371
- columnType: column.col_type,
372
- };
373
-
374
- legendaItemsByColor[color] = legendaItem;
375
- legendaItemsByValue[rowValue.raw] = legendaItem;
376
- legendaItems.push(legendaItem);
377
- });
378
- sortedData.forEach(row => {
379
- const rowValue = CaseUtil.getRowValue(row.content, col, completeCaseType);
380
- const legendaItem = legendaItemsByValue[rowValue.raw];
381
- legendaItem.caseIds.push(row.id);
382
- caseIdColors[row.id] = legendaItem.color;
383
- });
384
- }
385
-
386
- } else {
387
- const rawValues = sortedData.map(row => CaseUtil.getRowValue(row.content, col, completeCaseType));
388
- const uniqueRowValues = uniqBy(rawValues, v => v.raw).sort(rowValueComperator);
389
-
390
- uniqueRowValues.forEach((rowValue, index) => {
391
- const color = rowValue.isMissing ? STRATIFICATION_COLOR_ITEM_MISSING : STRATIFICATION_COLORS[index];
392
- const legendaItem: StratificationLegendaItem = {
393
- caseIds: [],
394
- color,
395
- rowValue,
396
- columnType: column.col_type,
397
- };
398
-
399
- legendaItemsByColor[color] = legendaItem;
400
- legendaItemsByValue[rowValue.raw] = legendaItem;
401
- legendaItems.push(legendaItem);
402
- });
403
-
404
- sortedData.forEach(row => {
405
- const rowValue = CaseUtil.getRowValue(row.content, col, completeCaseType);
406
- const legendaItem = legendaItemsByValue[rowValue.raw];
407
- legendaItem.caseIds.push(row.id);
408
- caseIdColors[row.id] = legendaItem.color;
409
- });
410
- }
411
- set({
412
- stratification: {
413
- mode: STRATIFICATION_MODE.FIELD,
414
- col,
415
- caseIdColors,
416
- legendaItems,
417
- legendaItemsByColor,
418
- legendaItemsByValue,
419
- },
420
- });
421
- } else if (mode === STRATIFICATION_MODE.SELECTION) {
422
- const rawValues: STRATIFICATION_SELECTED[] = [STRATIFICATION_SELECTED.SELECTED, STRATIFICATION_SELECTED.UNSELECTED];
423
-
424
- rawValues.forEach(rawValue => {
425
- const color = rawValue === STRATIFICATION_SELECTED.SELECTED ? STRATIFICATION_COLORS[0] : STRATIFICATION_COLORS[1];
426
- const presentationValue = rawValue === STRATIFICATION_SELECTED.SELECTED ? t`Selected` : t`Unselected`;
427
- const legendaItem: StratificationLegendaItem = {
428
- caseIds: [],
429
- color,
430
- rowValue: {
431
- raw: rawValue,
432
- full: presentationValue,
433
- long: presentationValue,
434
- short: presentationValue,
435
- isMissing: false,
436
- },
437
- };
438
-
439
- legendaItemsByColor[color] = legendaItem;
440
- legendaItemsByValue[rawValue] = legendaItem;
441
- legendaItems.push(legendaItem);
442
- });
443
-
444
- sortedData.forEach(row => {
445
- const legendaItem = selectedIds.includes(row.id) ? legendaItemsByValue[STRATIFICATION_SELECTED.SELECTED] : legendaItemsByValue[STRATIFICATION_SELECTED.UNSELECTED];
446
-
447
- legendaItem.caseIds.push(row.id);
448
- caseIdColors[row.id] = legendaItem.color;
449
- });
450
- set({
451
- stratification: {
452
- mode: STRATIFICATION_MODE.SELECTION,
453
- col,
454
- caseIdColors,
455
- legendaItems,
456
- legendaItemsByColor,
457
- legendaItemsByValue,
458
- },
459
- });
460
- } else {
461
- set({ stratification: null });
462
- }
463
- },
464
- setSelectedIds: (selectedIds: string[]) => {
465
- tableStoreActions.setSelectedIds(selectedIds);
466
-
467
- const { stratification, stratify } = get();
468
-
469
- // Apply stratification
470
- if (selectedIds.length && (!stratification || stratification?.mode === STRATIFICATION_MODE.SELECTION)) {
471
- stratify(STRATIFICATION_MODE.SELECTION);
472
- } else if (stratification?.mode === STRATIFICATION_MODE.SELECTION && !selectedIds.length) {
473
- stratify(null);
474
- }
475
- },
476
- expandZone: (expandedZone: EPI_ZONE) => {
477
- set({ expandedZone });
478
- },
479
- updateEpiTreeWidgetData: (data: Partial<EpiTreeWidgetData>) => {
480
- set({ epiTreeWidgetData: produce(get().epiTreeWidgetData, (draft) => ({ ...draft, ...data })) });
481
- },
482
- updateEpiListWidgetData: (data: Partial<EpiListWidgetData>) => {
483
- set({ epiListWidgetData: produce(get().epiListWidgetData, (draft) => ({ ...draft, ...data })) });
484
- },
485
- updateEpiCurveWidgetData: (data: Partial<EpiCurveWidgetData>) => {
486
- set({ epiCurveWidgetData: produce(get().epiCurveWidgetData, (draft) => ({ ...draft, ...data })) });
487
- },
488
- updateEpiMapWidgetData: (data: Partial<EpiMapWidgetData>) => {
489
- set({ epiMapWidgetData: produce(get().epiMapWidgetData, (draft) => ({ ...draft, ...data })) });
490
- },
491
- mutateCachedCase: (caseId: string, item: Case) => {
492
- const queryClient = QueryClientManager.instance.queryClient;
493
- const currentCases = QueryUtil.getValidQueryData<Case[]>(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY));
494
- queryClient.setQueryData(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY), currentCases.map(c => c.id === caseId ? item : c));
495
- },
496
- setPhylogeneticTreeResponse: (phylogeneticTree) => {
497
- const { reloadSortedData, reloadTree, reloadSelectedIds, newick } = get();
498
-
499
- if (newick === phylogeneticTree.newick_repr) {
500
- return;
501
- }
502
-
503
- if (phylogeneticTree.newick_repr && phylogeneticTree.newick_repr.trim().length > 0 && phylogeneticTree.newick_repr !== '();') {
504
- // parse the newick into a tree
505
- const parsedTree = NewickUtil.parse(phylogeneticTree.newick_repr);
506
- const sanitizedTree = EpiTreeUtil.sanitizeTree(parsedTree);
507
-
508
- // the tree determines the order of the line list
509
- const sortedIds = NewickUtil.getSortedNames(sanitizedTree);
510
-
511
- set({
512
- newick: phylogeneticTree.newick_repr,
513
- treeResponse: sanitizedTree,
514
- tree: sanitizedTree,
515
- sortedIds,
516
- });
517
- } else {
518
- set({
519
- newick: phylogeneticTree.newick_repr,
520
- treeResponse: null,
521
- tree: null,
522
- sortedIds: [],
523
- });
524
- }
525
-
526
- reloadTree();
527
- reloadSortedData();
528
- reloadSelectedIds();
529
- },
530
-
531
- // Overwrite table store actions
532
- setFilterValues: async (filterValues: FilterValues) => {
533
- const { filters: prevFilters } = get();
534
- const previousFilterValues: FilterValues = {};
535
- prevFilters.forEach(filter => {
536
- previousFilterValues[filter.id] = filter.filterValue;
537
- });
538
- const filterValuesDiff = ObjectUtil.getObjectDiff(previousFilterValues, filterValues);
539
- const treeFilter = prevFilters.find(filter => filter instanceof TreeFilter);
540
- const hadTreeFilter = !treeFilter.isInitialFilterValue(previousFilterValues[treeFilter.id]);
541
- if (hadTreeFilter && !filterValuesDiff.includes(treeFilter.id)) {
542
- NotificationManager.instance.showNotification({
543
- message: t`The tree filter has automatically been removed, because it's incompatible with the results of the other filters.`,
544
- severity: 'info',
545
- });
546
- await tableStoreActions.setFilterValues({
547
- ...filterValues,
548
- [treeFilter.id]: treeFilter.initialFilterValue,
549
- });
550
- } else {
551
- await tableStoreActions.setFilterValues(filterValues);
552
- }
553
- },
554
- reloadFilterData: () => {
555
- const { reloadStratification, reloadStratifyableColumns } = get();
556
- tableStoreActions.reloadFilterData();
557
- reloadStratifyableColumns();
558
- reloadStratification();
559
- },
560
-
561
- // Private
562
- reloadFilterPriorityData: (filterPriority: string, data: Case[]): Case[] => {
563
- const { filters, reloadTree } = get();
564
- if (filterPriority === SELECTION_FILTER_GROUP) {
565
- const selectionFilter = filters.find(filter => filter instanceof SelectionFilter);
566
- let filteredCases: Case[];
567
- if (!selectionFilter.isInitialFilterValue()) {
568
- const caseIdsInSelection = selectionFilter.filterValue;
569
- filteredCases = data.filter(c => caseIdsInSelection.includes(c.id));
570
- } else {
571
- filteredCases = data;
572
- }
573
- return filteredCases;
574
- }
575
- if (filterPriority === TREE_FILTER_GROUP) {
576
- const treeFilter = filters.find(filter => filter instanceof TreeFilter);
577
- reloadTree();
578
- const { tree } = get();
579
- let filteredCases: Case[];
580
- if (!treeFilter.isInitialFilterValue()) {
581
- const { subTreeLeaveNames } = tree;
582
- filteredCases = data.filter(c => subTreeLeaveNames.includes(c.id));
583
- } else {
584
- filteredCases = data;
585
- }
586
- return filteredCases;
587
- }
588
- throw new Error(`Unknown filter group: ${filterPriority}`);
589
- },
590
- reloadTree: () => {
591
- const { filters, treeResponse, epiTreeWidgetData: { treeConfiguration } } = get();
592
- const zoomedInTreeNodeName = filters.find(filter => filter instanceof TreeFilter)?.filterValue;
593
- const tree = zoomedInTreeNodeName ? EpiTreeUtil.findNewTreeRoot(treeResponse, zoomedInTreeNodeName, 'node') : treeResponse;
594
- if (tree) {
595
- set({
596
- treeAddresses: {
597
- ...get().treeAddresses,
598
- [treeConfiguration.col.id]: {
599
- addresses: EpiTreeUtil.createTreeAddresses(tree),
600
- algorithmCode: treeConfiguration.treeAlgorithm.code,
601
- },
602
- },
603
- });
604
- }
605
- set({ tree });
606
- },
607
- reloadStratifyableColumns: () => {
608
- const { filteredData, frontendFilterPriorities } = get();
609
-
610
- const data = filteredData[last(frontendFilterPriorities)];
611
- const { ALLOWED_COL_TYPES_FOR_STRATIFICATION, STRATIFICATION_COLORS } = ConfigManager.instance.config.epi;
612
-
613
- const filteredCols = CaseTypeUtil.getCols(completeCaseType).filter(col => {
614
- const column = completeCaseType.ref_cols[col.ref_col_id];
615
- if (!ALLOWED_COL_TYPES_FOR_STRATIFICATION.includes(column.col_type)) {
616
- return false;
617
- }
618
- return true;
619
- });
620
- const stratifyableColumns = filteredCols.map<StratifiableColumn>(col => {
621
- const numUniqueValues = uniq(data.map(row => CaseUtil.getRowValue(row.content, col, completeCaseType).raw)).length;
622
- let enabled = true;
623
- if (numUniqueValues === 0 || numUniqueValues > STRATIFICATION_COLORS.length) {
624
- enabled = false;
625
- }
626
- return {
627
- col,
628
- enabled,
629
- };
630
- });
631
- set({ stratifyableColumns });
632
- },
633
- reloadStratification: () => {
634
- const { stratification, stratify, stratifyableColumns } = get();
635
- if (stratification?.mode === STRATIFICATION_MODE.FIELD) {
636
- const activeStratifyableColumn = stratifyableColumns.find(c => c.col.ref_col_id === stratification.col.ref_col_id);
637
- if (!activeStratifyableColumn?.enabled) {
638
- // column no longer stratifiable
639
- NotificationManager.instance.showNotification({
640
- message: t`The grouping column is no longer available. Grouping has been removed.`,
641
- severity: 'info',
642
- });
643
- stratify(null);
644
- return;
645
- }
646
- }
647
-
648
- if (!stratification) {
649
- return;
650
- }
651
- stratify(stratification.mode, stratification.col);
652
- },
653
- destroy: () => {
654
- EpiHighlightingManager.instance.reset();
655
- tableStoreActions.destroy();
656
- },
657
- fetchData: async () => {
658
- set({ isMaxResultsExceeded: false, isMaxResultsExceededDismissed: false, dataError: null });
659
- const { fetchAbortController: previousFetchAbortController, globalAbortSignal, findSimilarCasesResults } = get();
660
- const queryClient = QueryClientManager.instance.queryClient;
661
-
662
- const similarCaseIds = findSimilarCasesResults?.flatMap((result) => result.similarCaseIds) || [];
663
-
664
- if (previousFetchAbortController && !previousFetchAbortController.signal.aborted) {
665
- previousFetchAbortController.abort();
666
- }
667
- const fetchAbortController = new AbortController();
668
- const globalAbortSignalListener = () => {
669
- fetchAbortController.abort();
670
- globalAbortSignal.removeEventListener('abort', globalAbortSignalListener);
671
- };
672
- globalAbortSignal.addEventListener('abort', globalAbortSignalListener);
673
-
674
- set({ fetchAbortController });
675
- set({ isDataLoading: true });
676
- const { filters, setBaseData } = get();
677
- const activeFilters = filters
678
- .filter(filter => filter.filterMode === FILTER_MODE.BACKEND && !filter.isInitialFilterValue())
679
- .map(activeFilter => activeFilter.toBackendFilter())
680
- .filter(x => !!x);
681
- const compositeFilter: TypedCompositeFilter = activeFilters.length
682
- ? {
683
- type: 'COMPOSITE',
684
- filters: activeFilters,
685
- operator: 'AND',
686
- }
687
- : undefined;
688
-
689
- const caseQuery: CaseQuery = {
690
- case_type_id: completeCaseType.id,
691
- case_set_ids: caseSetId ? [caseSetId] : undefined,
692
- filter: compositeFilter,
693
- };
694
- const retrieveCaseIdsByQueryQueryKey = QueryUtil.getRetrieveCaseIdsByQueryKey(completeCaseType.id, caseQuery);
695
-
696
- try {
697
- let currentCaseIdsByQueryResponse = QueryUtil.getValidQueryData<CaseQueryResult>(retrieveCaseIdsByQueryQueryKey);
698
- if (!currentCaseIdsByQueryResponse) {
699
- const retrieveCaseIdsByQueryResponse = (await CaseApi.instance.retrieveCaseIdsByQuery(caseQuery, { signal: fetchAbortController.signal })).data;
700
- currentCaseIdsByQueryResponse = retrieveCaseIdsByQueryResponse;
701
- queryClient.setQueryData(retrieveCaseIdsByQueryQueryKey, currentCaseIdsByQueryResponse);
702
- }
703
-
704
- // Note: Combine the case ids from the query with similar case ids from the "find similar cases" feature, to make sure the similar cases are included in the data even if they do not match the current filters.
705
- // It's possible the user added similar cases to the current case_set after. Then the case will be included in the query AND the similar case result. So we need to make sure to only include unique case ids.
706
- const caseIds = uniq([...currentCaseIdsByQueryResponse.case_ids, ...similarCaseIds]);
707
-
708
- const currentCases = QueryUtil.getValidQueryData<Case[]>(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY));
709
- const currentCaseIds = (currentCases ?? []).map(x => x.id);
710
- const missingCaseIds = difference(caseIds, currentCaseIds);
711
- if (missingCaseIds.length) {
712
- const missingCasesResult = (await CaseApi.instance.retrieveCasesByIds({
713
- case_type_id: completeCaseType.id,
714
- case_ids: missingCaseIds,
715
- }, { signal: fetchAbortController.signal })).data;
716
- queryClient.setQueryData(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY), [...currentCases ?? [], ...missingCasesResult]);
717
- }
718
-
719
- const casesMap = new Map((QueryUtil.getValidQueryData<Case[]>(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY)) ?? []).map(x => [x.id, x]));
720
- casesMap.forEach((item) => {
721
- queryClient.setQueryData(QueryUtil.getGenericKey(QUERY_KEY.CASES_LAZY, item.id), item);
722
- });
723
- const cases = caseIds.map(id => casesMap.get(id));
724
-
725
- setBaseData(cases);
726
- set({ isDataLoading: false, isMaxResultsExceeded: currentCaseIdsByQueryResponse.is_max_results_exceeded });
727
- } catch (error: unknown) {
728
- if (!AxiosUtil.isAxiosCanceledError(error)) {
729
- set({ dataError: error as Error });
730
- }
731
- } finally {
732
- globalAbortSignal.removeEventListener('abort', globalAbortSignalListener);
733
- }
734
- },
735
- };
736
- },
737
- createTableStorePersistConfiguration<Case, EpiDashboardStore>(kwArgs.storageNamePostFix, kwArgs.storageVersion, (state) => {
738
- return {
739
- epiTreeWidgetData: {
740
- ...createEpiTreeWidgetDataInitialState(),
741
- treeConfiguration: state.epiTreeWidgetData.treeConfiguration,
742
- },
743
- numVisibleAttributesInSummary: state.numVisibleAttributesInSummary,
744
- };
745
- }),
746
- ),
747
- );
748
- epiDashboardStore.getState().setFilters(EpiFilterUtil.createFilters(completeCaseType), EpiFilterUtil.createFilterDimensions(completeCaseType), [SELECTION_FILTER_GROUP, TREE_FILTER_GROUP]);
749
- return epiDashboardStore;
750
- };