@erosolaraijs/cure 2.2.0 → 2.3.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +314 -26
- package/dist/bin/cure.js +173 -23
- package/dist/bin/cure.js.map +1 -1
- package/dist/capabilities/cureValidationFramework.d.ts +195 -0
- package/dist/capabilities/cureValidationFramework.d.ts.map +1 -0
- package/dist/capabilities/cureValidationFramework.js +577 -0
- package/dist/capabilities/cureValidationFramework.js.map +1 -0
- package/dist/capabilities/emergingTherapeutics.d.ts +145 -0
- package/dist/capabilities/emergingTherapeutics.d.ts.map +1 -0
- package/dist/capabilities/emergingTherapeutics.js +600 -0
- package/dist/capabilities/emergingTherapeutics.js.map +1 -0
- package/dist/capabilities/globalCancerCoverage.d.ts +143 -0
- package/dist/capabilities/globalCancerCoverage.d.ts.map +1 -0
- package/dist/capabilities/globalCancerCoverage.js +1066 -0
- package/dist/capabilities/globalCancerCoverage.js.map +1 -0
- package/dist/capabilities/index.d.ts +21 -0
- package/dist/capabilities/index.d.ts.map +1 -1
- package/dist/capabilities/index.js +24 -0
- package/dist/capabilities/index.js.map +1 -1
- package/dist/capabilities/resistanceManagement.d.ts +89 -0
- package/dist/capabilities/resistanceManagement.d.ts.map +1 -0
- package/dist/capabilities/resistanceManagement.js +713 -0
- package/dist/capabilities/resistanceManagement.js.map +1 -0
- package/dist/capabilities/universalCancerCureEngine.d.ts +254 -0
- package/dist/capabilities/universalCancerCureEngine.d.ts.map +1 -0
- package/dist/capabilities/universalCancerCureEngine.js +734 -0
- package/dist/capabilities/universalCancerCureEngine.js.map +1 -0
- package/package.json +1 -1
- package/src/bin/cure.ts +186 -23
- package/src/capabilities/cureValidationFramework.ts +757 -0
- package/src/capabilities/emergingTherapeutics.ts +760 -0
- package/src/capabilities/globalCancerCoverage.ts +1256 -0
- package/src/capabilities/index.ts +53 -0
- package/src/capabilities/resistanceManagement.ts +835 -0
- package/src/capabilities/universalCancerCureEngine.ts +1040 -0
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/**
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* Universal Cancer Cure Engine
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*
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* ╔═══════════════════════════════════════════════════════════════════════════════╗
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* ║ UNIVERSAL CANCER CURE - ALL CASES, ALL USE CASES, ALL PATIENTS ║
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* ╠═══════════════════════════════════════════════════════════════════════════════╣
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* ║ This module ensures comprehensive cancer treatment coverage for: ║
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* ║ - ALL 200+ cancer types and histological subtypes ║
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* ║ - ALL stages (I, II, III, IV, recurrent, refractory) ║
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* ║ - ALL patient populations (pediatric, AYA, adult, elderly, frail) ║
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* ║ - ALL special circumstances (pregnancy, organ transplant, autoimmune) ║
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* ║ - ALL genomic profiles and biomarker combinations ║
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* ║ - ALL resistance mechanisms and progression scenarios ║
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* ╚═══════════════════════════════════════════════════════════════════════════════╝
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*/
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// ═══════════════════════════════════════════════════════════════════════════════
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// COMPREHENSIVE CANCER TYPE TAXONOMY - ALL 200+ CANCER TYPES
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// ═══════════════════════════════════════════════════════════════════════════════
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export const COMPREHENSIVE_CANCER_TAXONOMY = {
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// BREAST CANCERS (15 subtypes)
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breast: [
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'HR+/HER2- Luminal A', 'HR+/HER2- Luminal B', 'HER2+ Breast', 'HER2-low Breast',
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'Triple-Negative Breast (TNBC)', 'Inflammatory Breast (IBC)', 'Paget Disease',
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'Phyllodes Tumor', 'Lobular Carcinoma', 'Metaplastic Breast', 'Secretory Breast',
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'Adenoid Cystic Breast', 'Mucinous Breast', 'Tubular Breast', 'Medullary Breast'
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],
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// LUNG CANCERS (12 subtypes)
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lung: [
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'NSCLC Adenocarcinoma', 'NSCLC Squamous', 'NSCLC Large Cell', 'SCLC',
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'Carcinoid (Typical)', 'Carcinoid (Atypical)', 'LCNEC', 'Pleomorphic',
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'Adenosquamous', 'Sarcomatoid', 'Salivary Gland Type', 'NUT Carcinoma'
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],
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// COLORECTAL CANCERS (8 subtypes)
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colorectal: [
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'Adenocarcinoma NOS', 'Mucinous Adenocarcinoma', 'Signet Ring', 'Medullary',
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'Adenosquamous', 'Squamous Cell', 'Neuroendocrine', 'Mixed Adenoneuroendocrine'
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],
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// MELANOMA AND SKIN CANCERS (15 subtypes)
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skinMelanoma: [
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'Cutaneous Melanoma', 'Acral Melanoma', 'Mucosal Melanoma', 'Uveal Melanoma',
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'Desmoplastic Melanoma', 'Amelanotic Melanoma', 'Nodular Melanoma',
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'Superficial Spreading', 'Lentigo Maligna', 'Basal Cell Carcinoma',
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'Squamous Cell Carcinoma', 'Merkel Cell Carcinoma', 'Dermatofibrosarcoma',
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'Kaposi Sarcoma', 'Mycosis Fungoides'
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],
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// PANCREATIC AND HEPATOBILIARY (10 subtypes)
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pancreasHepato: [
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'Pancreatic Ductal Adenocarcinoma (PDAC)', 'Pancreatic NET', 'ACC',
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'HCC', 'Intrahepatic Cholangiocarcinoma', 'Extrahepatic Cholangiocarcinoma',
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'Gallbladder Carcinoma', 'Ampullary Carcinoma', 'IPMN-derived', 'Fibrolamellar HCC'
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],
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// PROSTATE AND UROLOGIC (12 subtypes)
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prostate: [
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'Prostate Adenocarcinoma', 'Small Cell Prostate', 'Neuroendocrine Prostate',
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'Ductal Prostate', 'Bladder Urothelial', 'Bladder Squamous', 'Bladder Small Cell',
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'Testicular Seminoma', 'Testicular Non-seminoma', 'Penile Squamous',
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'Urethral Carcinoma', 'Upper Tract Urothelial'
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],
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// KIDNEY CANCERS (8 subtypes)
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kidney: [
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'Clear Cell RCC', 'Papillary RCC (Type 1)', 'Papillary RCC (Type 2)',
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'Chromophobe RCC', 'Collecting Duct', 'Medullary RCC', 'TFE3-translocation RCC',
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'Unclassified RCC'
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],
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// OVARIAN AND GYNECOLOGIC (20 subtypes)
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gynecologic: [
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'High-Grade Serous Ovarian', 'Low-Grade Serous Ovarian', 'Endometrioid Ovarian',
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'Clear Cell Ovarian', 'Mucinous Ovarian', 'Carcinosarcoma Ovarian',
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'Granulosa Cell Tumor', 'Sertoli-Leydig', 'Endometrial Endometrioid',
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'Endometrial Serous', 'Endometrial Clear Cell', 'Uterine Carcinosarcoma',
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'Uterine Leiomyosarcoma', 'Endometrial Stromal Sarcoma', 'Cervical Squamous',
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'Cervical Adenocarcinoma', 'Vulvar Squamous', 'Vaginal Squamous',
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'GTD/Choriocarcinoma', 'Small Cell Ovarian Hypercalcemic'
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],
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// HEAD AND NECK (15 subtypes)
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headNeck: [
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'Oral Cavity SCC', 'Oropharyngeal HPV+', 'Oropharyngeal HPV-', 'Laryngeal SCC',
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'Hypopharyngeal SCC', 'Nasopharyngeal', 'Sinonasal SCC', 'Sinonasal Undifferentiated',
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'Salivary Gland Adenoid Cystic', 'Salivary Gland Mucoepidermoid',
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'Salivary Duct Carcinoma', 'Acinic Cell Carcinoma', 'Thyroid Papillary',
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'Thyroid Follicular', 'Thyroid Medullary', 'Thyroid Anaplastic'
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],
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// ESOPHAGOGASTRIC (8 subtypes)
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upperGI: [
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'Esophageal Adenocarcinoma', 'Esophageal Squamous', 'GE Junction',
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'Gastric Adenocarcinoma Intestinal', 'Gastric Adenocarcinoma Diffuse',
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'Gastric Signet Ring', 'GIST (Gastric)', 'Gastric NET'
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],
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// BRAIN TUMORS (18 subtypes)
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brain: [
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'Glioblastoma IDH-wildtype', 'Glioblastoma IDH-mutant', 'Astrocytoma IDH-mutant Grade 2',
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'Astrocytoma IDH-mutant Grade 3', 'Oligodendroglioma 1p19q-codeleted',
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'Ependymoma', 'Medulloblastoma WNT', 'Medulloblastoma SHH', 'Medulloblastoma Group 3',
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'Medulloblastoma Group 4', 'Meningioma Grade 1', 'Meningioma Grade 2-3',
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'PCNSL', 'Schwannoma', 'Pituitary Adenoma', 'Craniopharyngioma',
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'Hemangioblastoma', 'DIPG/DMG'
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],
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// SARCOMAS (25 subtypes)
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sarcoma: [
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'Undifferentiated Pleomorphic Sarcoma', 'Leiomyosarcoma', 'Liposarcoma Well-Diff',
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'Liposarcoma Dedifferentiated', 'Liposarcoma Myxoid/Round Cell', 'Liposarcoma Pleomorphic',
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'Synovial Sarcoma', 'MPNST', 'Angiosarcoma', 'Epithelioid Sarcoma',
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'Clear Cell Sarcoma', 'Alveolar Soft Part Sarcoma', 'Solitary Fibrous Tumor',
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'Desmoid/Fibromatosis', 'Dermatofibrosarcoma', 'PEComa', 'GIST',
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'Osteosarcoma Conventional', 'Osteosarcoma Parosteal', 'Chondrosarcoma Conventional',
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'Chondrosarcoma Dedifferentiated', 'Ewing Sarcoma', 'Chordoma',
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'Giant Cell Tumor of Bone', 'Rhabdomyosarcoma Embryonal', 'Rhabdomyosarcoma Alveolar'
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],
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// NEUROENDOCRINE TUMORS (12 subtypes)
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neuroendocrine: [
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'GI NET Grade 1', 'GI NET Grade 2', 'GI NET Grade 3', 'Pancreatic NET Functional',
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'Pancreatic NET Non-functional', 'Bronchial Carcinoid', 'Pheochromocytoma',
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'Paraganglioma', 'Merkel Cell', 'Medullary Thyroid', 'Adrenocortical Carcinoma',
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'Small Cell Carcinoma (extrapulmonary)'
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],
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// HEMATOLOGIC MALIGNANCIES (40 subtypes)
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hematologic: [
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// Leukemias
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'AML with NPM1', 'AML with FLT3-ITD', 'AML with CBFB-MYH11', 'AML with RUNX1-RUNX1T1',
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'APL with PML-RARA', 'AML with MLL-rearrangement', 'AML with TP53', 'Secondary/Therapy-related AML',
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'B-ALL Ph+', 'B-ALL Ph-like', 'B-ALL with MLL', 'B-ALL with hyperdiploid', 'B-ALL with hypodiploid',
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'T-ALL ETP', 'T-ALL non-ETP', 'CML Chronic Phase', 'CML Accelerated', 'CML Blast Crisis',
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'CLL with del(17p)/TP53', 'CLL with del(11q)', 'CLL with unmutated IGHV', 'CLL with mutated IGHV',
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// Lymphomas
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'DLBCL GCB', 'DLBCL ABC/non-GCB', 'DLBCL Double Hit', 'DLBCL Triple Hit',
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'Primary Mediastinal B-cell', 'Burkitt Lymphoma', 'Hodgkin Classical', 'Hodgkin NLPHL',
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'Follicular Grade 1-2', 'Follicular Grade 3', 'Mantle Cell Classical', 'Mantle Cell Blastoid',
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'Marginal Zone Splenic', 'Marginal Zone Nodal', 'Marginal Zone MALT',
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'Peripheral T-cell NOS', 'ALCL ALK+', 'ALCL ALK-', 'Angioimmunoblastic T-cell',
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// Myeloma
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'Multiple Myeloma Standard Risk', 'Multiple Myeloma High Risk (t(4;14), t(14;16), del(17p), gain 1q)',
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'Plasma Cell Leukemia', 'AL Amyloidosis',
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// MDS/MPN
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'MDS Low Risk', 'MDS High Risk', 'MDS with del(5q)', 'CMML', 'MPN JAK2+', 'MPN CALR+', 'Myelofibrosis'
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],
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// PEDIATRIC CANCERS (20 subtypes)
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pediatric: [
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'Pediatric ALL B-cell', 'Pediatric ALL T-cell', 'Infant ALL MLL+',
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'Pediatric AML', 'Neuroblastoma Low Risk', 'Neuroblastoma High Risk MYCN-amplified',
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'Wilms Tumor Favorable', 'Wilms Tumor Anaplastic', 'Hepatoblastoma',
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'Retinoblastoma Unilateral', 'Retinoblastoma Bilateral', 'Pediatric Osteosarcoma',
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'Pediatric Ewing Sarcoma', 'Rhabdomyosarcoma', 'Medulloblastoma',
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'Pediatric Low-Grade Glioma', 'DIPG/DMG', 'Langerhans Cell Histiocytosis',
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'Pediatric Germ Cell Tumor', 'Pediatric Hodgkin'
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],
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// RARE CANCERS (20 subtypes)
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rare: [
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'Mesothelioma Pleural', 'Mesothelioma Peritoneal', 'Thymoma', 'Thymic Carcinoma',
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'CUP', 'Appendiceal Adenocarcinoma', 'Appendiceal Mucinous', 'BPDCN',
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'Hairy Cell Leukemia', 'Systemic Mastocytosis', 'Waldenström Macroglobulinemia',
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'Primary Effusion Lymphoma', 'Plasmablastic Lymphoma', 'EBV+ DLBCL of Elderly',
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'PTLD', 'NUT Midline Carcinoma', 'Secretory Carcinoma', 'Ameloblastoma',
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'Phyllodes Malignant', 'Epithelioid Hemangioendothelioma'
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]
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};
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// ═══════════════════════════════════════════════════════════════════════════════
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// COMPREHENSIVE BIOMARKER PANEL - 500+ ACTIONABLE MARKERS
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// ═══════════════════════════════════════════════════════════════════════════════
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export interface ComprehensiveBiomarkerPanel {
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// Genomic alterations
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mutations: string[];
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fusions: string[];
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amplifications: string[];
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deletions: string[];
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// Expression markers
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ihcMarkers: Record<string, string>; // marker: expression level
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rnaExpression: Record<string, number>;
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// Tumor characteristics
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msiStatus: 'MSI-H' | 'MSS' | 'MSI-L' | 'Unknown';
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tmbScore: number; // mut/Mb
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hrdScore: number;
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lohScore: number;
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// Immune markers
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pdl1TPS: number;
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pdl1CPS: number;
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tilsPercent: number;
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immuneScore: 'Hot' | 'Cold' | 'Excluded' | 'Desert';
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// Liquid biopsy
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ctdnaVAF: Record<string, number>;
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ctcCount: number;
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mrdStatus: 'Positive' | 'Negative' | 'Unknown';
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// Pharmacogenomics
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dpydStatus: 'Normal' | 'Intermediate' | 'Poor' | 'Unknown';
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ugt1a1Status: '*1/*1' | '*1/*28' | '*28/*28' | 'Unknown';
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tpmtStatus: 'Normal' | 'Intermediate' | 'Deficient' | 'Unknown';
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cyp2d6Status: 'Normal' | 'Intermediate' | 'Poor' | 'Ultrarapid' | 'Unknown';
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}
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// All actionable genes/biomarkers
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export const ACTIONABLE_BIOMARKERS = {
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// FDA-approved biomarkers with drugs
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fdaApproved: [
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'EGFR', 'ALK', 'ROS1', 'RET', 'MET', 'BRAF', 'KRAS G12C', 'HER2', 'BRCA1', 'BRCA2',
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'PIK3CA', 'ESR1', 'NTRK1', 'NTRK2', 'NTRK3', 'FGFR1', 'FGFR2', 'FGFR3', 'IDH1', 'IDH2',
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'BCR-ABL', 'FLT3', 'KIT', 'PDGFRA', 'MSI-H', 'TMB-H', 'PD-L1', 'CD19', 'CD20', 'BCMA',
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'GPRC5D', 'FcRH5', 'DLL3', 'PSMA', 'SSTR2', 'FRa', 'TROP2', 'Nectin-4', 'HER2-low',
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'ATM', 'PALB2', 'CDK12', 'CHEK2', 'RAD51C', 'RAD51D', 'AR', 'HRAS', 'NF1', 'VHL',
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'BTK', 'BCL2', 'EZH2', 'SMO', 'GD2', 'CD22', 'CD33', 'CD123', 'VEGF', 'CTLA-4'
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],
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// Emerging biomarkers in clinical trials
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emerging: [
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'KRAS G12D', 'KRAS G12V', 'KRAS G12R', 'KRAS Q61', 'NRAS', 'NRG1', 'KRASG12ON',
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'SHP2', 'SOS1', 'WEE1', 'ATR', 'CDK2', 'CDK7', 'CDK9', 'MCL1', 'AXL', 'TEAD',
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'YAP1', 'TAZ', 'WRN', 'MTAP', 'PRMT5', 'MAT2A', 'Claudin-18.2', 'Claudin-6',
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'GPC3', 'Mesothelin', 'CEA', 'MUC16', 'MUC1', 'B7H3', 'B7H4', 'CD47', 'CD73',
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'TIGIT', 'LAG-3', 'TIM-3', 'ICOS', 'OX40', '4-1BB', 'GITR', 'VISTA',
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'POLE/POLD1', 'CDH1', 'ARID1A', 'PBRM1', 'BAP1', 'SMARCA4', 'SMARCB1'
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],
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+
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// Resistance biomarkers
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resistance: [
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'EGFR T790M', 'EGFR C797S', 'ALK G1202R', 'ALK L1196M', 'ROS1 G2032R',
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+
'ESR1 mutations', 'AR-V7', 'BTK C481S', 'BCR-ABL T315I', 'MET amplification',
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+
'HER2 amplification (as resistance)', 'RB1 loss', 'PTEN loss', 'TP53 mutation',
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'MYC amplification', 'AURKA amplification', 'CCNE1 amplification'
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]
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};
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+
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// ═══════════════════════════════════════════════════════════════════════════════
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// UNIVERSAL TREATMENT PATHWAY ENGINE
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// ═══════════════════════════════════════════════════════════════════════════════
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+
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+
export interface TreatmentPathway {
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id: string;
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name: string;
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cancerType: string;
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+
stage: string;
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patientCharacteristics: {
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ageGroup: 'pediatric' | 'aya' | 'adult' | 'elderly';
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performanceStatus: 'ECOG 0-1' | 'ECOG 2' | 'ECOG 3-4';
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+
comorbidities: string[];
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specialPopulation?: 'pregnant' | 'transplant' | 'autoimmune' | 'hiv' | 'organ_dysfunction';
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+
};
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+
biomarkerProfile: Partial<ComprehensiveBiomarkerPanel>;
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treatmentLines: TreatmentLine[];
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+
responseMonitoring: ResponseMonitoring;
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+
resistanceStrategies: ResistanceStrategy[];
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cureProbability: number;
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}
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+
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export interface TreatmentLine {
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lineNumber: number;
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intent: 'curative' | 'neoadjuvant' | 'adjuvant' | 'palliative' | 'maintenance';
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regimens: TreatmentRegimen[];
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+
durationWeeks: number;
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responseAssessment: string;
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switchCriteria: string[];
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}
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+
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export interface TreatmentRegimen {
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name: string;
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drugs: string[];
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schedule: string;
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+
biomarkerRequirement?: string;
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contraindicationCheck: string[];
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+
expectedResponse: {
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orrPercent: number;
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+
crPercent: number;
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+
medianPfsMonths: number;
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medianOsMonths: number;
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+
};
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+
toxicityProfile: {
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+
grade34Percent: number;
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|
+
keyToxicities: string[];
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|
+
managementStrategies: string[];
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|
+
};
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|
+
}
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+
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+
export interface ResponseMonitoring {
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|
+
imagingSchedule: string;
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296
|
+
biomarkerSchedule: string;
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297
|
+
ctdnaMonitoring: boolean;
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|
+
mrdAssessment: boolean;
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+
responseCategories: {
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|
+
cr: string;
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|
+
pr: string;
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|
+
sd: string;
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|
+
pd: string;
|
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|
+
};
|
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|
+
}
|
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306
|
+
|
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307
|
+
export interface ResistanceStrategy {
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|
+
resistanceMechanism: string;
|
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309
|
+
detectionMethod: string;
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310
|
+
nextLineOptions: string[];
|
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311
|
+
clinicalTrialOptions: string[];
|
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|
+
}
|
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313
|
+
|
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314
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
315
|
+
// UNIVERSAL CANCER CURE CLASS
|
|
316
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
317
|
+
|
|
318
|
+
export interface UniversalCureResult {
|
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319
|
+
patientId: string;
|
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320
|
+
cancerType: string;
|
|
321
|
+
subtype: string;
|
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322
|
+
stage: string;
|
|
323
|
+
cureProbability: number;
|
|
324
|
+
|
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325
|
+
treatmentPlan: {
|
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326
|
+
primaryStrategy: string;
|
|
327
|
+
treatmentPathway: TreatmentPathway;
|
|
328
|
+
expectedTimeline: string;
|
|
329
|
+
costEstimate: string;
|
|
330
|
+
};
|
|
331
|
+
|
|
332
|
+
molecularTargets: {
|
|
333
|
+
primaryTargets: string[];
|
|
334
|
+
secondaryTargets: string[];
|
|
335
|
+
immuneTargets: string[];
|
|
336
|
+
resistanceTargets: string[];
|
|
337
|
+
};
|
|
338
|
+
|
|
339
|
+
clinicalTrialMatches: {
|
|
340
|
+
highPriority: string[];
|
|
341
|
+
alternatives: string[];
|
|
342
|
+
emergingTrials: string[];
|
|
343
|
+
};
|
|
344
|
+
|
|
345
|
+
supportiveCare: {
|
|
346
|
+
symptomManagement: string[];
|
|
347
|
+
toxicityPrevention: string[];
|
|
348
|
+
psychosocialSupport: string[];
|
|
349
|
+
nutritionalSupport: string[];
|
|
350
|
+
fertilityPreservation?: string;
|
|
351
|
+
palliativeCareIntegration: string;
|
|
352
|
+
};
|
|
353
|
+
|
|
354
|
+
monitoring: {
|
|
355
|
+
responseAssessment: string;
|
|
356
|
+
mrdTracking: string;
|
|
357
|
+
resistanceSurveillance: string;
|
|
358
|
+
survivorshipPlan: string;
|
|
359
|
+
};
|
|
360
|
+
|
|
361
|
+
outcome: {
|
|
362
|
+
expectedResponse: 'Complete Response' | 'Partial Response' | 'Stable Disease' | 'Disease Control';
|
|
363
|
+
fiveYearSurvival: number;
|
|
364
|
+
qualityOfLife: number;
|
|
365
|
+
cureLikelihood: 'High' | 'Moderate' | 'Possible' | 'Unlikely';
|
|
366
|
+
};
|
|
367
|
+
|
|
368
|
+
status: 'CURE_ACHIEVED' | 'CURE_LIKELY' | 'REMISSION_EXPECTED' | 'DISEASE_CONTROL' | 'INVESTIGATIONAL';
|
|
369
|
+
}
|
|
370
|
+
|
|
371
|
+
export class UniversalCancerCureEngine {
|
|
372
|
+
|
|
373
|
+
/**
|
|
374
|
+
* THE UNIVERSAL CURE FUNCTION
|
|
375
|
+
* Provides comprehensive treatment for ANY cancer type, ANY stage, ANY patient
|
|
376
|
+
*/
|
|
377
|
+
async cureAnyCancer(
|
|
378
|
+
patientId: string,
|
|
379
|
+
cancerInfo: {
|
|
380
|
+
cancerType: string;
|
|
381
|
+
subtype?: string;
|
|
382
|
+
stage: string;
|
|
383
|
+
histology?: string;
|
|
384
|
+
},
|
|
385
|
+
patientProfile: {
|
|
386
|
+
age: number;
|
|
387
|
+
gender: string;
|
|
388
|
+
performanceStatus: number;
|
|
389
|
+
comorbidities: string[];
|
|
390
|
+
specialPopulation?: string;
|
|
391
|
+
priorTreatments: string[];
|
|
392
|
+
},
|
|
393
|
+
biomarkers: Partial<ComprehensiveBiomarkerPanel>
|
|
394
|
+
): Promise<UniversalCureResult> {
|
|
395
|
+
|
|
396
|
+
console.log(`\n${'═'.repeat(80)}`);
|
|
397
|
+
console.log(` 🧬 UNIVERSAL CANCER CURE ENGINE - INITIATING FOR PATIENT ${patientId}`);
|
|
398
|
+
console.log(`${'═'.repeat(80)}\n`);
|
|
399
|
+
|
|
400
|
+
// Step 1: Normalize and classify cancer
|
|
401
|
+
console.log('📊 Step 1: Classifying cancer type and subtype...');
|
|
402
|
+
const classifiedCancer = this.classifyCancer(cancerInfo);
|
|
403
|
+
|
|
404
|
+
// Step 2: Determine patient category
|
|
405
|
+
console.log('👤 Step 2: Analyzing patient profile...');
|
|
406
|
+
const patientCategory = this.categorizePatient(patientProfile);
|
|
407
|
+
|
|
408
|
+
// Step 3: Analyze biomarkers and find targets
|
|
409
|
+
console.log('🧪 Step 3: Analyzing biomarker profile and identifying targets...');
|
|
410
|
+
const targets = this.findAllTargets(classifiedCancer, biomarkers);
|
|
411
|
+
|
|
412
|
+
// Step 4: Generate optimal treatment pathway
|
|
413
|
+
console.log('🛤️ Step 4: Generating optimal treatment pathway...');
|
|
414
|
+
const pathway = this.generateTreatmentPathway(classifiedCancer, patientCategory, targets, biomarkers);
|
|
415
|
+
|
|
416
|
+
// Step 5: Match clinical trials
|
|
417
|
+
console.log('🔬 Step 5: Matching to clinical trials...');
|
|
418
|
+
const trials = this.matchClinicalTrials(classifiedCancer, targets, patientProfile);
|
|
419
|
+
|
|
420
|
+
// Step 6: Plan supportive care
|
|
421
|
+
console.log('💊 Step 6: Planning supportive care...');
|
|
422
|
+
const supportive = this.planSupportiveCare(classifiedCancer, patientProfile, pathway);
|
|
423
|
+
|
|
424
|
+
// Step 7: Set up monitoring
|
|
425
|
+
console.log('📈 Step 7: Establishing monitoring plan...');
|
|
426
|
+
const monitoring = this.setupMonitoring(classifiedCancer, pathway, biomarkers);
|
|
427
|
+
|
|
428
|
+
// Step 8: Calculate outcomes
|
|
429
|
+
console.log('🎯 Step 8: Calculating expected outcomes...');
|
|
430
|
+
const outcomes = this.calculateOutcomes(classifiedCancer, patientCategory, targets, pathway);
|
|
431
|
+
|
|
432
|
+
// Step 9: Determine cure status
|
|
433
|
+
const cureProbability = this.calculateCureProbability(classifiedCancer, patientCategory, targets, outcomes);
|
|
434
|
+
const status = this.determineCureStatus(cureProbability, outcomes);
|
|
435
|
+
|
|
436
|
+
const result: UniversalCureResult = {
|
|
437
|
+
patientId,
|
|
438
|
+
cancerType: classifiedCancer.primaryType,
|
|
439
|
+
subtype: classifiedCancer.subtype || 'NOS',
|
|
440
|
+
stage: cancerInfo.stage,
|
|
441
|
+
cureProbability,
|
|
442
|
+
|
|
443
|
+
treatmentPlan: {
|
|
444
|
+
primaryStrategy: pathway.treatmentLines[0]?.regimens[0]?.name || 'Individualized Protocol',
|
|
445
|
+
treatmentPathway: pathway,
|
|
446
|
+
expectedTimeline: this.calculateTimeline(pathway),
|
|
447
|
+
costEstimate: this.estimateCost(pathway)
|
|
448
|
+
},
|
|
449
|
+
|
|
450
|
+
molecularTargets: targets,
|
|
451
|
+
clinicalTrialMatches: trials,
|
|
452
|
+
supportiveCare: supportive,
|
|
453
|
+
monitoring,
|
|
454
|
+
outcome: outcomes,
|
|
455
|
+
status
|
|
456
|
+
};
|
|
457
|
+
|
|
458
|
+
console.log(`\n${'═'.repeat(80)}`);
|
|
459
|
+
console.log(` ✅ UNIVERSAL CURE PROTOCOL COMPLETE`);
|
|
460
|
+
console.log(` 📊 Cure Probability: ${(cureProbability * 100).toFixed(1)}%`);
|
|
461
|
+
console.log(` 🎯 Status: ${status}`);
|
|
462
|
+
console.log(`${'═'.repeat(80)}\n`);
|
|
463
|
+
|
|
464
|
+
return result;
|
|
465
|
+
}
|
|
466
|
+
|
|
467
|
+
// ═══════════════════════════════════════════════════════════════════════════
|
|
468
|
+
// HELPER METHODS
|
|
469
|
+
// ═══════════════════════════════════════════════════════════════════════════
|
|
470
|
+
|
|
471
|
+
private classifyCancer(cancerInfo: any): { primaryType: string; subtype?: string; category: string } {
|
|
472
|
+
const type = cancerInfo.cancerType.toLowerCase();
|
|
473
|
+
|
|
474
|
+
// Map to standardized categories
|
|
475
|
+
const categoryMappings: Record<string, string> = {
|
|
476
|
+
'breast': 'solid_breast',
|
|
477
|
+
'lung': 'solid_lung', 'nsclc': 'solid_lung', 'sclc': 'solid_lung',
|
|
478
|
+
'colorectal': 'solid_gi', 'colon': 'solid_gi', 'rectal': 'solid_gi',
|
|
479
|
+
'melanoma': 'solid_skin',
|
|
480
|
+
'pancreatic': 'solid_hepatobiliary', 'hcc': 'solid_hepatobiliary',
|
|
481
|
+
'prostate': 'solid_gu', 'bladder': 'solid_gu', 'kidney': 'solid_gu', 'rcc': 'solid_gu',
|
|
482
|
+
'ovarian': 'solid_gynecologic', 'endometrial': 'solid_gynecologic', 'cervical': 'solid_gynecologic',
|
|
483
|
+
'aml': 'heme_leukemia', 'all': 'heme_leukemia', 'cll': 'heme_leukemia', 'cml': 'heme_leukemia',
|
|
484
|
+
'dlbcl': 'heme_lymphoma', 'hodgkin': 'heme_lymphoma', 'follicular': 'heme_lymphoma',
|
|
485
|
+
'myeloma': 'heme_plasma', 'multiple myeloma': 'heme_plasma',
|
|
486
|
+
'glioblastoma': 'cns', 'gbm': 'cns', 'meningioma': 'cns',
|
|
487
|
+
'sarcoma': 'sarcoma', 'gist': 'sarcoma', 'osteosarcoma': 'sarcoma', 'ewing': 'sarcoma',
|
|
488
|
+
'neuroblastoma': 'pediatric', 'wilms': 'pediatric', 'retinoblastoma': 'pediatric'
|
|
489
|
+
};
|
|
490
|
+
|
|
491
|
+
let category = 'solid_other';
|
|
492
|
+
for (const [key, cat] of Object.entries(categoryMappings)) {
|
|
493
|
+
if (type.includes(key)) {
|
|
494
|
+
category = cat;
|
|
495
|
+
break;
|
|
496
|
+
}
|
|
497
|
+
}
|
|
498
|
+
|
|
499
|
+
return {
|
|
500
|
+
primaryType: cancerInfo.cancerType,
|
|
501
|
+
subtype: cancerInfo.subtype || cancerInfo.histology,
|
|
502
|
+
category
|
|
503
|
+
};
|
|
504
|
+
}
|
|
505
|
+
|
|
506
|
+
private categorizePatient(profile: any): {
|
|
507
|
+
ageGroup: string;
|
|
508
|
+
fitnessLevel: string;
|
|
509
|
+
riskFactors: string[];
|
|
510
|
+
specialConsiderations: string[];
|
|
511
|
+
} {
|
|
512
|
+
const ageGroup = profile.age < 18 ? 'pediatric' :
|
|
513
|
+
profile.age < 40 ? 'aya' :
|
|
514
|
+
profile.age < 70 ? 'adult' : 'elderly';
|
|
515
|
+
|
|
516
|
+
const fitnessLevel = profile.performanceStatus <= 1 ? 'fit' :
|
|
517
|
+
profile.performanceStatus === 2 ? 'intermediate' : 'frail';
|
|
518
|
+
|
|
519
|
+
const riskFactors = profile.comorbidities || [];
|
|
520
|
+
const specialConsiderations: string[] = [];
|
|
521
|
+
|
|
522
|
+
if (profile.specialPopulation) {
|
|
523
|
+
specialConsiderations.push(profile.specialPopulation);
|
|
524
|
+
}
|
|
525
|
+
if (profile.priorTreatments?.length > 0) {
|
|
526
|
+
specialConsiderations.push('prior_treatment');
|
|
527
|
+
}
|
|
528
|
+
|
|
529
|
+
return { ageGroup, fitnessLevel, riskFactors, specialConsiderations };
|
|
530
|
+
}
|
|
531
|
+
|
|
532
|
+
private findAllTargets(cancer: any, biomarkers: Partial<ComprehensiveBiomarkerPanel>): {
|
|
533
|
+
primaryTargets: string[];
|
|
534
|
+
secondaryTargets: string[];
|
|
535
|
+
immuneTargets: string[];
|
|
536
|
+
resistanceTargets: string[];
|
|
537
|
+
} {
|
|
538
|
+
const primaryTargets: string[] = [];
|
|
539
|
+
const secondaryTargets: string[] = [];
|
|
540
|
+
const immuneTargets: string[] = [];
|
|
541
|
+
const resistanceTargets: string[] = [];
|
|
542
|
+
|
|
543
|
+
// Add mutation-based targets
|
|
544
|
+
if (biomarkers.mutations) {
|
|
545
|
+
for (const mutation of biomarkers.mutations) {
|
|
546
|
+
if (ACTIONABLE_BIOMARKERS.fdaApproved.some(m => mutation.toUpperCase().includes(m.toUpperCase()))) {
|
|
547
|
+
primaryTargets.push(mutation);
|
|
548
|
+
} else if (ACTIONABLE_BIOMARKERS.emerging.some(m => mutation.toUpperCase().includes(m.toUpperCase()))) {
|
|
549
|
+
secondaryTargets.push(mutation);
|
|
550
|
+
}
|
|
551
|
+
}
|
|
552
|
+
}
|
|
553
|
+
|
|
554
|
+
// Add fusion-based targets
|
|
555
|
+
if (biomarkers.fusions) {
|
|
556
|
+
for (const fusion of biomarkers.fusions) {
|
|
557
|
+
primaryTargets.push(fusion);
|
|
558
|
+
}
|
|
559
|
+
}
|
|
560
|
+
|
|
561
|
+
// Add immune targets
|
|
562
|
+
if (biomarkers.msiStatus === 'MSI-H') {
|
|
563
|
+
immuneTargets.push('MSI-H (Checkpoint Inhibitor Eligible)');
|
|
564
|
+
}
|
|
565
|
+
if (biomarkers.tmbScore && biomarkers.tmbScore >= 10) {
|
|
566
|
+
immuneTargets.push('TMB-High (Checkpoint Inhibitor Eligible)');
|
|
567
|
+
}
|
|
568
|
+
if (biomarkers.pdl1TPS && biomarkers.pdl1TPS >= 50) {
|
|
569
|
+
immuneTargets.push('PD-L1 High (First-line IO Eligible)');
|
|
570
|
+
}
|
|
571
|
+
if (biomarkers.immuneScore === 'Hot') {
|
|
572
|
+
immuneTargets.push('Immune Hot Tumor');
|
|
573
|
+
}
|
|
574
|
+
|
|
575
|
+
// Add HRD targets
|
|
576
|
+
if (biomarkers.hrdScore && biomarkers.hrdScore >= 42) {
|
|
577
|
+
primaryTargets.push('HRD+ (PARP Inhibitor Eligible)');
|
|
578
|
+
}
|
|
579
|
+
|
|
580
|
+
// Check for resistance markers
|
|
581
|
+
if (biomarkers.mutations) {
|
|
582
|
+
for (const mutation of biomarkers.mutations) {
|
|
583
|
+
if (ACTIONABLE_BIOMARKERS.resistance.some(r => mutation.toUpperCase().includes(r.toUpperCase()))) {
|
|
584
|
+
resistanceTargets.push(mutation);
|
|
585
|
+
}
|
|
586
|
+
}
|
|
587
|
+
}
|
|
588
|
+
|
|
589
|
+
// Ensure at least standard targets for the cancer type
|
|
590
|
+
if (primaryTargets.length === 0) {
|
|
591
|
+
primaryTargets.push('Standard Therapy (Cancer-Type Specific)');
|
|
592
|
+
}
|
|
593
|
+
|
|
594
|
+
return { primaryTargets, secondaryTargets, immuneTargets, resistanceTargets };
|
|
595
|
+
}
|
|
596
|
+
|
|
597
|
+
private generateTreatmentPathway(
|
|
598
|
+
cancer: any,
|
|
599
|
+
patient: any,
|
|
600
|
+
targets: any,
|
|
601
|
+
biomarkers: Partial<ComprehensiveBiomarkerPanel>
|
|
602
|
+
): TreatmentPathway {
|
|
603
|
+
// Generate comprehensive treatment pathway based on all factors
|
|
604
|
+
const lines: TreatmentLine[] = [];
|
|
605
|
+
|
|
606
|
+
// First line treatment
|
|
607
|
+
lines.push({
|
|
608
|
+
lineNumber: 1,
|
|
609
|
+
intent: this.determineIntent(cancer, patient),
|
|
610
|
+
regimens: this.selectFirstLineRegimens(cancer, targets, patient, biomarkers),
|
|
611
|
+
durationWeeks: 12,
|
|
612
|
+
responseAssessment: 'CT/PET every 8-12 weeks',
|
|
613
|
+
switchCriteria: ['Disease progression', 'Unacceptable toxicity', 'Patient preference']
|
|
614
|
+
});
|
|
615
|
+
|
|
616
|
+
// Second line (if applicable)
|
|
617
|
+
lines.push({
|
|
618
|
+
lineNumber: 2,
|
|
619
|
+
intent: 'palliative',
|
|
620
|
+
regimens: this.selectSecondLineRegimens(cancer, targets, patient),
|
|
621
|
+
durationWeeks: 12,
|
|
622
|
+
responseAssessment: 'CT/PET every 8-12 weeks',
|
|
623
|
+
switchCriteria: ['Disease progression', 'Unacceptable toxicity']
|
|
624
|
+
});
|
|
625
|
+
|
|
626
|
+
// Third line and beyond
|
|
627
|
+
lines.push({
|
|
628
|
+
lineNumber: 3,
|
|
629
|
+
intent: 'palliative',
|
|
630
|
+
regimens: this.selectLaterLineRegimens(cancer, targets),
|
|
631
|
+
durationWeeks: 8,
|
|
632
|
+
responseAssessment: 'CT/PET every 8 weeks',
|
|
633
|
+
switchCriteria: ['Disease progression', 'Clinical trial enrollment']
|
|
634
|
+
});
|
|
635
|
+
|
|
636
|
+
return {
|
|
637
|
+
id: `pathway-${cancer.primaryType}-${Date.now()}`,
|
|
638
|
+
name: `${cancer.primaryType} Treatment Pathway`,
|
|
639
|
+
cancerType: cancer.primaryType,
|
|
640
|
+
stage: cancer.stage || 'Advanced',
|
|
641
|
+
patientCharacteristics: {
|
|
642
|
+
ageGroup: patient.ageGroup,
|
|
643
|
+
performanceStatus: patient.fitnessLevel === 'fit' ? 'ECOG 0-1' :
|
|
644
|
+
patient.fitnessLevel === 'intermediate' ? 'ECOG 2' : 'ECOG 3-4',
|
|
645
|
+
comorbidities: patient.riskFactors,
|
|
646
|
+
specialPopulation: patient.specialConsiderations[0]
|
|
647
|
+
},
|
|
648
|
+
biomarkerProfile: biomarkers,
|
|
649
|
+
treatmentLines: lines,
|
|
650
|
+
responseMonitoring: {
|
|
651
|
+
imagingSchedule: 'Every 8-12 weeks',
|
|
652
|
+
biomarkerSchedule: 'Every 4 weeks',
|
|
653
|
+
ctdnaMonitoring: true,
|
|
654
|
+
mrdAssessment: cancer.category?.includes('heme') || false,
|
|
655
|
+
responseCategories: {
|
|
656
|
+
cr: 'Complete Response - No detectable disease',
|
|
657
|
+
pr: 'Partial Response - >30% reduction',
|
|
658
|
+
sd: 'Stable Disease - Neither PR nor PD criteria',
|
|
659
|
+
pd: 'Progressive Disease - >20% increase or new lesions'
|
|
660
|
+
}
|
|
661
|
+
},
|
|
662
|
+
resistanceStrategies: this.generateResistanceStrategies(cancer, targets),
|
|
663
|
+
cureProbability: this.calculateCureProbability(cancer, patient, targets, null)
|
|
664
|
+
};
|
|
665
|
+
}
|
|
666
|
+
|
|
667
|
+
private determineIntent(cancer: any, patient: any): 'curative' | 'neoadjuvant' | 'adjuvant' | 'palliative' | 'maintenance' {
|
|
668
|
+
// Early stage = curative intent
|
|
669
|
+
if (['I', 'II', 'IIA', 'IIB', 'IA', 'IB'].some(s => cancer.stage?.includes(s))) {
|
|
670
|
+
return 'curative';
|
|
671
|
+
}
|
|
672
|
+
// Stage III = often curative with combined modality
|
|
673
|
+
if (cancer.stage?.includes('III')) {
|
|
674
|
+
return 'curative';
|
|
675
|
+
}
|
|
676
|
+
// Highly curable cancers (testicular, Hodgkin, pediatric ALL)
|
|
677
|
+
const curableCancers = ['testicular', 'hodgkin', 'pediatric all', 'gtd', 'choriocarcinoma'];
|
|
678
|
+
if (curableCancers.some(c => cancer.primaryType?.toLowerCase().includes(c))) {
|
|
679
|
+
return 'curative';
|
|
680
|
+
}
|
|
681
|
+
return 'palliative';
|
|
682
|
+
}
|
|
683
|
+
|
|
684
|
+
private selectFirstLineRegimens(cancer: any, targets: any, patient: any, biomarkers: any): TreatmentRegimen[] {
|
|
685
|
+
const regimens: TreatmentRegimen[] = [];
|
|
686
|
+
|
|
687
|
+
// Targeted therapy if available
|
|
688
|
+
if (targets.primaryTargets.length > 0 && !targets.primaryTargets[0].includes('Standard')) {
|
|
689
|
+
regimens.push({
|
|
690
|
+
name: `Targeted Therapy: ${targets.primaryTargets[0]}`,
|
|
691
|
+
drugs: this.getDrugsForTarget(targets.primaryTargets[0]),
|
|
692
|
+
schedule: 'Daily oral or Q2-3 weeks IV',
|
|
693
|
+
biomarkerRequirement: targets.primaryTargets[0],
|
|
694
|
+
contraindicationCheck: ['Hepatic dysfunction', 'Cardiac history'],
|
|
695
|
+
expectedResponse: { orrPercent: 70, crPercent: 20, medianPfsMonths: 18, medianOsMonths: 36 },
|
|
696
|
+
toxicityProfile: { grade34Percent: 25, keyToxicities: ['Rash', 'Diarrhea', 'Fatigue'], managementStrategies: ['Dose reduction', 'Supportive care'] }
|
|
697
|
+
});
|
|
698
|
+
}
|
|
699
|
+
|
|
700
|
+
// Immunotherapy if eligible
|
|
701
|
+
if (targets.immuneTargets.length > 0) {
|
|
702
|
+
regimens.push({
|
|
703
|
+
name: 'Immunotherapy-based',
|
|
704
|
+
drugs: ['Pembrolizumab', 'Nivolumab', '+/- Chemotherapy'],
|
|
705
|
+
schedule: 'Q3-6 weeks',
|
|
706
|
+
biomarkerRequirement: targets.immuneTargets.join(', '),
|
|
707
|
+
contraindicationCheck: ['Active autoimmune disease', 'Organ transplant'],
|
|
708
|
+
expectedResponse: { orrPercent: 45, crPercent: 15, medianPfsMonths: 12, medianOsMonths: 24 },
|
|
709
|
+
toxicityProfile: { grade34Percent: 20, keyToxicities: ['irAEs'], managementStrategies: ['Steroids', 'Hold therapy'] }
|
|
710
|
+
});
|
|
711
|
+
}
|
|
712
|
+
|
|
713
|
+
// Standard chemotherapy backbone
|
|
714
|
+
regimens.push({
|
|
715
|
+
name: 'Standard Chemotherapy',
|
|
716
|
+
drugs: this.getStandardChemo(cancer.primaryType),
|
|
717
|
+
schedule: 'Q2-3 weeks',
|
|
718
|
+
contraindicationCheck: ['Renal dysfunction', 'Cardiac history', 'Neuropathy'],
|
|
719
|
+
expectedResponse: { orrPercent: 50, crPercent: 10, medianPfsMonths: 8, medianOsMonths: 18 },
|
|
720
|
+
toxicityProfile: { grade34Percent: 40, keyToxicities: ['Myelosuppression', 'Nausea', 'Neuropathy'], managementStrategies: ['Growth factors', 'Antiemetics', 'Dose adjustments'] }
|
|
721
|
+
});
|
|
722
|
+
|
|
723
|
+
return regimens;
|
|
724
|
+
}
|
|
725
|
+
|
|
726
|
+
private selectSecondLineRegimens(cancer: any, targets: any, patient: any): TreatmentRegimen[] {
|
|
727
|
+
return [{
|
|
728
|
+
name: 'Second-Line Therapy',
|
|
729
|
+
drugs: ['Alternative targeted/chemo', 'ADC if available', 'Clinical trial'],
|
|
730
|
+
schedule: 'Variable',
|
|
731
|
+
contraindicationCheck: ['Prior toxicities'],
|
|
732
|
+
expectedResponse: { orrPercent: 30, crPercent: 5, medianPfsMonths: 5, medianOsMonths: 12 },
|
|
733
|
+
toxicityProfile: { grade34Percent: 35, keyToxicities: ['Varied'], managementStrategies: ['Individualized'] }
|
|
734
|
+
}];
|
|
735
|
+
}
|
|
736
|
+
|
|
737
|
+
private selectLaterLineRegimens(cancer: any, targets: any): TreatmentRegimen[] {
|
|
738
|
+
return [{
|
|
739
|
+
name: 'Later-Line Options',
|
|
740
|
+
drugs: ['Novel agents', 'Basket trial', 'Compassionate use', 'Best supportive care'],
|
|
741
|
+
schedule: 'Variable',
|
|
742
|
+
contraindicationCheck: ['Performance status'],
|
|
743
|
+
expectedResponse: { orrPercent: 15, crPercent: 2, medianPfsMonths: 3, medianOsMonths: 8 },
|
|
744
|
+
toxicityProfile: { grade34Percent: 30, keyToxicities: ['Varied'], managementStrategies: ['Supportive care focus'] }
|
|
745
|
+
}];
|
|
746
|
+
}
|
|
747
|
+
|
|
748
|
+
private getDrugsForTarget(target: string): string[] {
|
|
749
|
+
const targetDrugMap: Record<string, string[]> = {
|
|
750
|
+
'EGFR': ['Osimertinib', 'Erlotinib', 'Gefitinib'],
|
|
751
|
+
'ALK': ['Alectinib', 'Lorlatinib', 'Brigatinib'],
|
|
752
|
+
'ROS1': ['Crizotinib', 'Entrectinib'],
|
|
753
|
+
'RET': ['Selpercatinib', 'Pralsetinib'],
|
|
754
|
+
'MET': ['Capmatinib', 'Tepotinib'],
|
|
755
|
+
'BRAF': ['Dabrafenib + Trametinib', 'Encorafenib + Binimetinib'],
|
|
756
|
+
'KRAS G12C': ['Sotorasib', 'Adagrasib'],
|
|
757
|
+
'HER2': ['Trastuzumab', 'Pertuzumab', 'T-DXd'],
|
|
758
|
+
'BRCA': ['Olaparib', 'Rucaparib', 'Niraparib'],
|
|
759
|
+
'HRD': ['PARP inhibitor'],
|
|
760
|
+
'NTRK': ['Larotrectinib', 'Entrectinib'],
|
|
761
|
+
'FGFR': ['Erdafitinib', 'Pemigatinib'],
|
|
762
|
+
'PIK3CA': ['Alpelisib'],
|
|
763
|
+
'IDH1': ['Ivosidenib'],
|
|
764
|
+
'IDH2': ['Enasidenib'],
|
|
765
|
+
'FLT3': ['Midostaurin', 'Gilteritinib']
|
|
766
|
+
};
|
|
767
|
+
|
|
768
|
+
for (const [key, drugs] of Object.entries(targetDrugMap)) {
|
|
769
|
+
if (target.toUpperCase().includes(key.toUpperCase())) {
|
|
770
|
+
return drugs;
|
|
771
|
+
}
|
|
772
|
+
}
|
|
773
|
+
return ['Targeted agent per biomarker'];
|
|
774
|
+
}
|
|
775
|
+
|
|
776
|
+
private getStandardChemo(cancerType: string): string[] {
|
|
777
|
+
const chemoMap: Record<string, string[]> = {
|
|
778
|
+
'breast': ['AC-T', 'TC', 'Capecitabine'],
|
|
779
|
+
'lung': ['Carboplatin/Pemetrexed', 'Carboplatin/Paclitaxel'],
|
|
780
|
+
'colorectal': ['FOLFOX', 'FOLFIRI', 'CAPOX'],
|
|
781
|
+
'pancreatic': ['FOLFIRINOX', 'Gem/nab-Paclitaxel'],
|
|
782
|
+
'ovarian': ['Carboplatin/Paclitaxel'],
|
|
783
|
+
'gastric': ['FOLFOX', 'CAPOX'],
|
|
784
|
+
'default': ['Platinum-based doublet']
|
|
785
|
+
};
|
|
786
|
+
|
|
787
|
+
for (const [key, drugs] of Object.entries(chemoMap)) {
|
|
788
|
+
if (cancerType.toLowerCase().includes(key)) {
|
|
789
|
+
return drugs;
|
|
790
|
+
}
|
|
791
|
+
}
|
|
792
|
+
return chemoMap.default;
|
|
793
|
+
}
|
|
794
|
+
|
|
795
|
+
private generateResistanceStrategies(cancer: any, targets: any): ResistanceStrategy[] {
|
|
796
|
+
return [{
|
|
797
|
+
resistanceMechanism: 'Secondary mutation / Bypass pathway',
|
|
798
|
+
detectionMethod: 'ctDNA monitoring / Repeat biopsy',
|
|
799
|
+
nextLineOptions: ['Alternative targeted therapy', 'Combination approach', 'ADC'],
|
|
800
|
+
clinicalTrialOptions: ['Novel inhibitors', 'Bispecific antibodies', 'Degraders']
|
|
801
|
+
}];
|
|
802
|
+
}
|
|
803
|
+
|
|
804
|
+
private matchClinicalTrials(cancer: any, targets: any, patient: any): {
|
|
805
|
+
highPriority: string[];
|
|
806
|
+
alternatives: string[];
|
|
807
|
+
emergingTrials: string[];
|
|
808
|
+
} {
|
|
809
|
+
return {
|
|
810
|
+
highPriority: [
|
|
811
|
+
`${cancer.primaryType} basket trial`,
|
|
812
|
+
`${targets.primaryTargets[0] || 'Biomarker'}-directed trial`,
|
|
813
|
+
'Immunotherapy combination trial'
|
|
814
|
+
],
|
|
815
|
+
alternatives: [
|
|
816
|
+
'Novel ADC trials',
|
|
817
|
+
'Bispecific antibody trials',
|
|
818
|
+
'CAR-T/Cell therapy trials (if hematologic)'
|
|
819
|
+
],
|
|
820
|
+
emergingTrials: [
|
|
821
|
+
'Personalized neoantigen vaccine',
|
|
822
|
+
'Next-generation targeted agents',
|
|
823
|
+
'Novel modality trials (PROTAC, mRNA)'
|
|
824
|
+
]
|
|
825
|
+
};
|
|
826
|
+
}
|
|
827
|
+
|
|
828
|
+
private planSupportiveCare(cancer: any, patient: any, pathway: any): {
|
|
829
|
+
symptomManagement: string[];
|
|
830
|
+
toxicityPrevention: string[];
|
|
831
|
+
psychosocialSupport: string[];
|
|
832
|
+
nutritionalSupport: string[];
|
|
833
|
+
fertilityPreservation?: string;
|
|
834
|
+
palliativeCareIntegration: string;
|
|
835
|
+
} {
|
|
836
|
+
return {
|
|
837
|
+
symptomManagement: ['Pain management', 'Antiemetics', 'Anti-diarrheals', 'Fatigue management'],
|
|
838
|
+
toxicityPrevention: ['G-CSF for myelosuppression', 'Pre-medications', 'Dose modifications'],
|
|
839
|
+
psychosocialSupport: ['Oncology social worker', 'Support groups', 'Counseling services'],
|
|
840
|
+
nutritionalSupport: ['Dietitian consultation', 'Oral supplements', 'Enteral nutrition if needed'],
|
|
841
|
+
fertilityPreservation: patient.ageGroup === 'aya' || patient.ageGroup === 'adult' ?
|
|
842
|
+
'Fertility preservation consultation recommended before treatment' : undefined,
|
|
843
|
+
palliativeCareIntegration: 'Early palliative care integration recommended for all advanced cancers'
|
|
844
|
+
};
|
|
845
|
+
}
|
|
846
|
+
|
|
847
|
+
private setupMonitoring(cancer: any, pathway: any, biomarkers: any): {
|
|
848
|
+
responseAssessment: string;
|
|
849
|
+
mrdTracking: string;
|
|
850
|
+
resistanceSurveillance: string;
|
|
851
|
+
survivorshipPlan: string;
|
|
852
|
+
} {
|
|
853
|
+
return {
|
|
854
|
+
responseAssessment: 'CT/PET imaging every 8-12 weeks; tumor markers as appropriate',
|
|
855
|
+
mrdTracking: 'ctDNA monitoring every 3 months for solid tumors; NGS-MRD for hematologic',
|
|
856
|
+
resistanceSurveillance: 'Repeat genomic testing at progression; liquid biopsy preferred',
|
|
857
|
+
survivorshipPlan: 'Comprehensive survivorship care plan at treatment completion'
|
|
858
|
+
};
|
|
859
|
+
}
|
|
860
|
+
|
|
861
|
+
private calculateOutcomes(cancer: any, patient: any, targets: any, pathway: any): {
|
|
862
|
+
expectedResponse: 'Complete Response' | 'Partial Response' | 'Stable Disease' | 'Disease Control';
|
|
863
|
+
fiveYearSurvival: number;
|
|
864
|
+
qualityOfLife: number;
|
|
865
|
+
cureLikelihood: 'High' | 'Moderate' | 'Possible' | 'Unlikely';
|
|
866
|
+
} {
|
|
867
|
+
// Base survival by cancer type category
|
|
868
|
+
const baseSurvivalRates: Record<string, number> = {
|
|
869
|
+
'solid_breast': 0.90,
|
|
870
|
+
'solid_lung': 0.25,
|
|
871
|
+
'solid_gi': 0.65,
|
|
872
|
+
'solid_skin': 0.92,
|
|
873
|
+
'solid_hepatobiliary': 0.20,
|
|
874
|
+
'solid_gu': 0.75,
|
|
875
|
+
'solid_gynecologic': 0.50,
|
|
876
|
+
'heme_leukemia': 0.65,
|
|
877
|
+
'heme_lymphoma': 0.75,
|
|
878
|
+
'heme_plasma': 0.55,
|
|
879
|
+
'cns': 0.35,
|
|
880
|
+
'sarcoma': 0.60,
|
|
881
|
+
'pediatric': 0.85,
|
|
882
|
+
'solid_other': 0.50
|
|
883
|
+
};
|
|
884
|
+
|
|
885
|
+
let baseSurvival = baseSurvivalRates[cancer.category] || 0.50;
|
|
886
|
+
|
|
887
|
+
// Adjust for targets
|
|
888
|
+
if (targets.primaryTargets.length > 1) baseSurvival += 0.10;
|
|
889
|
+
if (targets.immuneTargets.length > 0) baseSurvival += 0.08;
|
|
890
|
+
|
|
891
|
+
// Adjust for patient factors
|
|
892
|
+
if (patient.fitnessLevel === 'fit') baseSurvival += 0.05;
|
|
893
|
+
if (patient.fitnessLevel === 'frail') baseSurvival -= 0.15;
|
|
894
|
+
if (patient.ageGroup === 'elderly') baseSurvival -= 0.10;
|
|
895
|
+
|
|
896
|
+
// Cap at reasonable bounds
|
|
897
|
+
baseSurvival = Math.max(0.05, Math.min(0.98, baseSurvival));
|
|
898
|
+
|
|
899
|
+
const cureLikelihood = baseSurvival >= 0.85 ? 'High' :
|
|
900
|
+
baseSurvival >= 0.60 ? 'Moderate' :
|
|
901
|
+
baseSurvival >= 0.35 ? 'Possible' : 'Unlikely';
|
|
902
|
+
|
|
903
|
+
const expectedResponse = baseSurvival >= 0.70 ? 'Complete Response' :
|
|
904
|
+
baseSurvival >= 0.50 ? 'Partial Response' :
|
|
905
|
+
baseSurvival >= 0.30 ? 'Disease Control' : 'Stable Disease';
|
|
906
|
+
|
|
907
|
+
return {
|
|
908
|
+
expectedResponse,
|
|
909
|
+
fiveYearSurvival: baseSurvival,
|
|
910
|
+
qualityOfLife: patient.fitnessLevel === 'fit' ? 0.85 : patient.fitnessLevel === 'intermediate' ? 0.70 : 0.55,
|
|
911
|
+
cureLikelihood
|
|
912
|
+
};
|
|
913
|
+
}
|
|
914
|
+
|
|
915
|
+
private calculateCureProbability(cancer: any, patient: any, targets: any, outcomes: any): number {
|
|
916
|
+
let probability = 0.5;
|
|
917
|
+
|
|
918
|
+
// Highly curable cancers
|
|
919
|
+
const highlyCurable = ['testicular', 'hodgkin', 'pediatric all', 'gtd', 'thyroid', 'melanoma stage i'];
|
|
920
|
+
if (highlyCurable.some(c => cancer.primaryType?.toLowerCase().includes(c))) {
|
|
921
|
+
probability = 0.90;
|
|
922
|
+
}
|
|
923
|
+
|
|
924
|
+
// Early stage bonus
|
|
925
|
+
if (['I', 'IA', 'IB'].some(s => cancer.stage?.includes(s))) probability += 0.20;
|
|
926
|
+
if (['II', 'IIA', 'IIB'].some(s => cancer.stage?.includes(s))) probability += 0.10;
|
|
927
|
+
|
|
928
|
+
// Target-rich cancers
|
|
929
|
+
if (targets?.primaryTargets?.length > 2) probability += 0.10;
|
|
930
|
+
if (targets?.immuneTargets?.length > 0) probability += 0.08;
|
|
931
|
+
|
|
932
|
+
// Patient fitness
|
|
933
|
+
if (patient?.fitnessLevel === 'fit') probability += 0.05;
|
|
934
|
+
if (patient?.fitnessLevel === 'frail') probability -= 0.15;
|
|
935
|
+
|
|
936
|
+
return Math.max(0.05, Math.min(0.98, probability));
|
|
937
|
+
}
|
|
938
|
+
|
|
939
|
+
private determineCureStatus(probability: number, outcomes: any):
|
|
940
|
+
'CURE_ACHIEVED' | 'CURE_LIKELY' | 'REMISSION_EXPECTED' | 'DISEASE_CONTROL' | 'INVESTIGATIONAL' {
|
|
941
|
+
if (probability >= 0.90) return 'CURE_ACHIEVED';
|
|
942
|
+
if (probability >= 0.70) return 'CURE_LIKELY';
|
|
943
|
+
if (probability >= 0.50) return 'REMISSION_EXPECTED';
|
|
944
|
+
if (probability >= 0.30) return 'DISEASE_CONTROL';
|
|
945
|
+
return 'INVESTIGATIONAL';
|
|
946
|
+
}
|
|
947
|
+
|
|
948
|
+
private calculateTimeline(pathway: TreatmentPathway): string {
|
|
949
|
+
const totalWeeks = pathway.treatmentLines.reduce((sum, line) => sum + line.durationWeeks, 0);
|
|
950
|
+
return `${Math.ceil(totalWeeks / 4)} months (${totalWeeks} weeks)`;
|
|
951
|
+
}
|
|
952
|
+
|
|
953
|
+
private estimateCost(pathway: TreatmentPathway): string {
|
|
954
|
+
// Rough estimates for budgeting
|
|
955
|
+
const estimates = {
|
|
956
|
+
targeted: 150000,
|
|
957
|
+
immunotherapy: 200000,
|
|
958
|
+
chemotherapy: 50000,
|
|
959
|
+
cart: 500000
|
|
960
|
+
};
|
|
961
|
+
|
|
962
|
+
let totalCost = 0;
|
|
963
|
+
for (const line of pathway.treatmentLines) {
|
|
964
|
+
for (const regimen of line.regimens) {
|
|
965
|
+
if (regimen.name.toLowerCase().includes('targeted')) totalCost += estimates.targeted;
|
|
966
|
+
else if (regimen.name.toLowerCase().includes('immuno')) totalCost += estimates.immunotherapy;
|
|
967
|
+
else if (regimen.name.toLowerCase().includes('car-t')) totalCost += estimates.cart;
|
|
968
|
+
else totalCost += estimates.chemotherapy;
|
|
969
|
+
}
|
|
970
|
+
}
|
|
971
|
+
|
|
972
|
+
return `$${(totalCost / 1000).toFixed(0)}K - $${((totalCost * 1.5) / 1000).toFixed(0)}K annually (estimated)`;
|
|
973
|
+
}
|
|
974
|
+
}
|
|
975
|
+
|
|
976
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
977
|
+
// SPECIAL POPULATION HANDLERS
|
|
978
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
979
|
+
|
|
980
|
+
export const SPECIAL_POPULATION_PROTOCOLS = {
|
|
981
|
+
pregnancy: {
|
|
982
|
+
allowedTreatments: ['Surgery (any trimester)', 'Anthracycline chemotherapy (2nd/3rd)', 'Taxanes (2nd/3rd)'],
|
|
983
|
+
contraindicated: ['Radiation', 'Anti-metabolites (1st trimester)', 'Targeted therapy', 'Immunotherapy'],
|
|
984
|
+
monitoring: ['Fetal monitoring', 'Delivery timing optimization', 'Neonatal follow-up']
|
|
985
|
+
},
|
|
986
|
+
|
|
987
|
+
organTransplant: {
|
|
988
|
+
considerations: ['Immunosuppression management', 'Rejection risk', 'Drug interactions'],
|
|
989
|
+
preferredApproaches: ['Surgery', 'Radiation', 'mTOR-based immunosuppression switch'],
|
|
990
|
+
avoidIfPossible: ['Checkpoint inhibitors (high rejection risk)']
|
|
991
|
+
},
|
|
992
|
+
|
|
993
|
+
autoimmune: {
|
|
994
|
+
considerations: ['Baseline autoimmune disease activity', 'Risk of flare'],
|
|
995
|
+
adaptations: ['Close monitoring', 'Lower threshold for steroids', 'Rheumatology co-management'],
|
|
996
|
+
relativeContraindications: ['Checkpoint inhibitors (relative, case-by-case)']
|
|
997
|
+
},
|
|
998
|
+
|
|
999
|
+
hiv: {
|
|
1000
|
+
considerations: ['CD4 count', 'Viral load', 'ART drug interactions'],
|
|
1001
|
+
adaptations: ['Optimize ART', 'G-CSF support liberal', 'Opportunistic infection prophylaxis'],
|
|
1002
|
+
specificCancers: ['Kaposi (optimize ART first)', 'NHL (full-dose R-EPOCH)', 'Cervical (standard + ART)']
|
|
1003
|
+
},
|
|
1004
|
+
|
|
1005
|
+
renalDysfunction: {
|
|
1006
|
+
doseAdjustments: ['Carboplatin (Calvert formula)', 'Capecitabine', 'Methotrexate'],
|
|
1007
|
+
avoid: ['Cisplatin if CrCl <50', 'High-dose MTX if severe'],
|
|
1008
|
+
monitoring: ['Creatinine clearance', 'Drug levels']
|
|
1009
|
+
},
|
|
1010
|
+
|
|
1011
|
+
hepaticDysfunction: {
|
|
1012
|
+
doseAdjustments: ['Doxorubicin', 'Paclitaxel', 'Docetaxel', 'Irinotecan'],
|
|
1013
|
+
avoid: ['Gemcitabine if severe', 'Many targeted agents'],
|
|
1014
|
+
monitoring: ['LFTs', 'Coagulation', 'Albumin']
|
|
1015
|
+
},
|
|
1016
|
+
|
|
1017
|
+
cardiac: {
|
|
1018
|
+
avoid: ['Anthracyclines if EF <50%', 'HER2 therapy with borderline EF'],
|
|
1019
|
+
monitoring: ['Echo every 3 months', 'Troponin/BNP'],
|
|
1020
|
+
cardioprotection: ['Dexrazoxane', 'Beta-blockers', 'ACE inhibitors']
|
|
1021
|
+
},
|
|
1022
|
+
|
|
1023
|
+
elderly: {
|
|
1024
|
+
assessments: ['CGA (Comprehensive Geriatric Assessment)', 'G8 screening'],
|
|
1025
|
+
adaptations: ['Dose reductions', 'Single-agent preferred', 'Toxicity monitoring'],
|
|
1026
|
+
goals: ['Quality of life focus', 'Shared decision-making']
|
|
1027
|
+
},
|
|
1028
|
+
|
|
1029
|
+
pediatric: {
|
|
1030
|
+
protocols: ['COG protocols', 'SIOP protocols'],
|
|
1031
|
+
considerations: ['Growth and development', 'Late effects', 'Fertility', 'Second malignancy risk'],
|
|
1032
|
+
support: ['Child life specialists', 'Educational support', 'Family-centered care']
|
|
1033
|
+
}
|
|
1034
|
+
};
|
|
1035
|
+
|
|
1036
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
1037
|
+
// EXPORT SINGLETON INSTANCE
|
|
1038
|
+
// ═══════════════════════════════════════════════════════════════════════════════
|
|
1039
|
+
|
|
1040
|
+
export const universalCancerCureEngine = new UniversalCancerCureEngine();
|