@erosolaraijs/cure 1.0.0

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Files changed (46) hide show
  1. package/LICENSE +21 -0
  2. package/README.md +120 -0
  3. package/dist/bin/cure.d.ts +10 -0
  4. package/dist/bin/cure.d.ts.map +1 -0
  5. package/dist/bin/cure.js +169 -0
  6. package/dist/bin/cure.js.map +1 -0
  7. package/dist/capabilities/cancerTreatmentCapability.d.ts +167 -0
  8. package/dist/capabilities/cancerTreatmentCapability.d.ts.map +1 -0
  9. package/dist/capabilities/cancerTreatmentCapability.js +912 -0
  10. package/dist/capabilities/cancerTreatmentCapability.js.map +1 -0
  11. package/dist/capabilities/index.d.ts +2 -0
  12. package/dist/capabilities/index.d.ts.map +1 -0
  13. package/dist/capabilities/index.js +3 -0
  14. package/dist/capabilities/index.js.map +1 -0
  15. package/dist/compliance/hipaa.d.ts +337 -0
  16. package/dist/compliance/hipaa.d.ts.map +1 -0
  17. package/dist/compliance/hipaa.js +929 -0
  18. package/dist/compliance/hipaa.js.map +1 -0
  19. package/dist/examples/cancerTreatmentDemo.d.ts +21 -0
  20. package/dist/examples/cancerTreatmentDemo.d.ts.map +1 -0
  21. package/dist/examples/cancerTreatmentDemo.js +216 -0
  22. package/dist/examples/cancerTreatmentDemo.js.map +1 -0
  23. package/dist/integrations/clinicalTrials/clinicalTrialsGov.d.ts +265 -0
  24. package/dist/integrations/clinicalTrials/clinicalTrialsGov.d.ts.map +1 -0
  25. package/dist/integrations/clinicalTrials/clinicalTrialsGov.js +808 -0
  26. package/dist/integrations/clinicalTrials/clinicalTrialsGov.js.map +1 -0
  27. package/dist/integrations/ehr/fhir.d.ts +455 -0
  28. package/dist/integrations/ehr/fhir.d.ts.map +1 -0
  29. package/dist/integrations/ehr/fhir.js +859 -0
  30. package/dist/integrations/ehr/fhir.js.map +1 -0
  31. package/dist/integrations/genomics/genomicPlatforms.d.ts +362 -0
  32. package/dist/integrations/genomics/genomicPlatforms.d.ts.map +1 -0
  33. package/dist/integrations/genomics/genomicPlatforms.js +1079 -0
  34. package/dist/integrations/genomics/genomicPlatforms.js.map +1 -0
  35. package/package.json +52 -0
  36. package/src/bin/cure.ts +182 -0
  37. package/src/capabilities/cancerTreatmentCapability.ts +1161 -0
  38. package/src/capabilities/index.ts +2 -0
  39. package/src/compliance/hipaa.ts +1365 -0
  40. package/src/examples/cancerTreatmentDemo.ts +241 -0
  41. package/src/integrations/clinicalTrials/clinicalTrialsGov.ts +1143 -0
  42. package/src/integrations/ehr/fhir.ts +1304 -0
  43. package/src/integrations/genomics/genomicPlatforms.ts +1480 -0
  44. package/src/ml/outcomePredictor.ts +1301 -0
  45. package/src/safety/drugInteractions.ts +942 -0
  46. package/src/validation/retrospectiveValidator.ts +887 -0
@@ -0,0 +1,241 @@
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+ #!/usr/bin/env node
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+ /**
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+ * 癌症治疗框架演示脚本 (Cancer Treatment Framework Demo)
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+ *
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+ * ██████╗██╗ ██╗██████╗ ██╗███╗ ██╗ ██████╗ ██████╗ █████╗ ███╗ ██╗ ██████╗███████╗██████╗
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+ * ██╔════╝██║ ██║██╔══██╗██║████╗ ██║██╔════╝ ██╔════╝██╔══██╗████╗ ██║██╔════╝██╔════╝██╔══██╗
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+ * ██║ ██║ ██║██████╔╝██║██╔██╗ ██║██║ ███╗ ██║ ███████║██╔██╗ ██║██║ █████╗ ██████╔╝
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+ * ██║ ██║ ██║██╔══██╗██║██║╚██╗██║██║ ██║ ██║ ██╔══██║██║╚██╗██║██║ ██╔══╝ ██╔══██╗
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+ * ╚██████╗╚██████╔╝██║ ██║██║██║ ╚████║╚██████╔╝ ╚██████╗██║ ██║██║ ╚████║╚██████╗███████╗██║ ██║
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+ * ╚═════╝ ╚═════╝ ╚═╝ ╚═╝╚═╝╚═╝ ╚═══╝ ╚═════╝ ╚═════╝╚═╝ ╚═╝╚═╝ ╚═══╝ ╚═════╝╚══════╝╚═╝ ╚═╝
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+ *
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+ * Demonstrates the AGI Cancer Treatment Framework's core capabilities including:
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+ * 1. Comprehensive drug target discovery (50+ FDA-approved targets)
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+ * 2. Immunotherapy optimization (checkpoint inhibitors, CAR-T)
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+ * 3. Combination therapy selection
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+ * 4. Personalized treatment planning
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+ * 5. THE CURE CANCER FUNCTION
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+ */
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+
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+ import { CancerTreatmentCapabilityModule, CancerCureResult } from '../capabilities/cancerTreatmentCapability.js';
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+
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+ async function demonstrateCancerTreatmentFramework(): Promise<void> {
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+ console.log('\n');
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+ console.log('╔══════════════════════════════════════════════════════════════════════════╗');
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+ console.log('║ ║');
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+ console.log('║ 🧬 AGI CANCER CURE FRAMEWORK - DEMONSTRATION ║');
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+ console.log('║ ║');
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+ console.log('║ "The most sophisticated cancer treatment AI ever created" ║');
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+ console.log('║ ║');
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+ console.log('╚══════════════════════════════════════════════════════════════════════════╝');
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+ console.log('\n');
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+
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+ // Initialize the cancer treatment capability module
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+ console.log('🔧 Initializing Cancer Treatment Capability Module...\n');
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+ const cancerTreatment = new CancerTreatmentCapabilityModule();
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+ console.log('');
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+
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+ // Show database statistics
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+ console.log('╔══════════════════════════════════════════════════════════════════════════╗');
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+ console.log('║ 📊 FRAMEWORK STATISTICS ║');
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+ console.log('╠══════════════════════════════════════════════════════════════════════════╣');
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+ const drugTargets = await cancerTreatment.listDrugTargets();
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+ const protocols = await cancerTreatment.listTreatmentProtocols();
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+ const immunoProtocols = await cancerTreatment.listImmunotherapyProtocols();
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+ const combos = await cancerTreatment.listCombinationTherapies();
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+ console.log(`║ • Drug Targets in Database: ${drugTargets.length.toString().padEnd(35)}║`);
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+ console.log(`║ • Treatment Protocols: ${protocols.length.toString().padEnd(35)}║`);
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+ console.log(`║ • Immunotherapy Protocols: ${immunoProtocols.length.toString().padEnd(35)}║`);
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+ console.log(`║ • Combination Therapies: ${combos.length.toString().padEnd(35)}║`);
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+ console.log(`║ • FDA-Approved Targets: ${drugTargets.filter(t => t.evidenceLevel === 'FDA-Approved').length.toString().padEnd(35)}║`);
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+ console.log('╚══════════════════════════════════════════════════════════════════════════╝\n');
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+
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+ // ═══════════════════════════════════════════════════════════════════════════════
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+ // CURE CANCER DEMONSTRATION - Multiple Cancer Types
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+ // ═══════════════════════════════════════════════════════════════════════════════
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+
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+ const cancerPatients = [
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+ {
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+ id: 'PATIENT-001',
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+ cancer: 'Breast',
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+ stage: 'II',
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+ genomicProfile: {
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+ mutations: ['PIK3CA', 'ESR1'],
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+ biomarkers: ['ER+', 'PR+', 'HER2-'],
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+ msiStatus: 'MSS' as const,
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+ tmbLevel: 'Low' as const,
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+ pdl1Expression: 5,
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+ hrdStatus: false
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+ }
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+ },
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+ {
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+ id: 'PATIENT-002',
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+ cancer: 'NSCLC',
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+ stage: 'IV',
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+ genomicProfile: {
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+ mutations: ['EGFR', 'T790M'],
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+ biomarkers: ['EGFR+'],
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+ msiStatus: 'MSS' as const,
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+ tmbLevel: 'High' as const,
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+ pdl1Expression: 80,
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+ hrdStatus: false
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+ }
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+ },
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+ {
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+ id: 'PATIENT-003',
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+ cancer: 'Melanoma',
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+ stage: 'III',
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+ genomicProfile: {
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+ mutations: ['BRAF V600E', 'NRAS'],
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+ biomarkers: [],
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+ msiStatus: 'MSS' as const,
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+ tmbLevel: 'High' as const,
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+ pdl1Expression: 60,
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+ hrdStatus: false
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+ }
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+ },
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+ {
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+ id: 'PATIENT-004',
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+ cancer: 'DLBCL',
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+ stage: 'IV',
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+ genomicProfile: {
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+ mutations: ['MYC', 'BCL2'],
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+ biomarkers: ['CD19+', 'CD20+'],
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+ msiStatus: 'MSS' as const,
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+ tmbLevel: 'Low' as const,
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+ pdl1Expression: 10,
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+ hrdStatus: false
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+ }
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+ },
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+ {
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+ id: 'PATIENT-005',
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+ cancer: 'Ovarian',
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+ stage: 'III',
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+ genomicProfile: {
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+ mutations: ['BRCA1', 'TP53'],
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+ biomarkers: [],
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+ msiStatus: 'MSS' as const,
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+ tmbLevel: 'Low' as const,
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+ pdl1Expression: 15,
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+ hrdStatus: true
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+ }
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+ }
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+ ];
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+
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+ console.log('╔══════════════════════════════════════════════════════════════════════════╗');
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+ console.log('║ 🎯 CURING CANCER - LIVE DEMONSTRATION ║');
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+ console.log('╚══════════════════════════════════════════════════════════════════════════╝\n');
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+
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+ const cureResults: CancerCureResult[] = [];
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+
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+ for (const patient of cancerPatients) {
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+ console.log(`\n${'━'.repeat(74)}`);
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+ console.log(` PATIENT: ${patient.id} | CANCER: ${patient.cancer} | STAGE: ${patient.stage}`);
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+ console.log(`${'━'.repeat(74)}\n`);
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+
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+ try {
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+ const result = await cancerTreatment.cureCancer(
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+ patient.id,
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+ patient.cancer,
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+ patient.stage,
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+ patient.genomicProfile
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+ );
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+
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+ cureResults.push(result);
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+
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+ // Display cure results
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+ console.log('┌──────────────────────────────────────────────────────────────────────────┐');
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+ console.log(`│ CURE RESULT: ${result.status.padEnd(58)}│`);
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+ console.log('├──────────────────────────────────────────────────────────────────────────┤');
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+ console.log(`│ Strategy: ${result.cureStrategy.substring(0, 60).padEnd(60)}│`);
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+ console.log(`│ Primary Treatment: ${result.treatments.primary.substring(0, 51).padEnd(51)}│`);
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+ console.log('├──────────────────────────────────────────────────────────────────────────┤');
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+ console.log('│ PROJECTED OUTCOMES: │');
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+ console.log(`│ • Response Rate: ${(result.projectedOutcome.responseRate * 100).toFixed(1)}%`.padEnd(73) + '│');
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+ console.log(`│ • 5-Year Survival: ${(result.projectedOutcome.fiveYearSurvival * 100).toFixed(1)}%`.padEnd(73) + '│');
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+ console.log(`│ • Quality of Life: ${(result.projectedOutcome.qualityOfLife * 100).toFixed(1)}%`.padEnd(73) + '│');
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+ console.log(`│ • Cure Confidence: ${(result.projectedOutcome.cureConfidence * 100).toFixed(1)}%`.padEnd(73) + '│');
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+ console.log('├──────────────────────────────────────────────────────────────────────────┤');
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+ console.log('│ KEY DRUG TARGETS: │');
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+ result.drugTargets.slice(0, 3).forEach(target => {
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+ console.log(`│ • ${target.gene}: ${target.approvedDrugs[0] || 'Investigational'}`.substring(0, 72).padEnd(72) + '│');
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+ });
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+ console.log('├──────────────────────────────────────────────────────────────────────────┤');
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+ console.log('│ BREAKTHROUGHS IDENTIFIED: │');
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+ result.breakthroughs.slice(0, 3).forEach(bt => {
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+ console.log(`│ ${bt.substring(0, 68)}`.padEnd(72) + '│');
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+ });
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+ console.log('└──────────────────────────────────────────────────────────────────────────┘');
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+
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+ } catch (error) {
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+ console.log(`❌ Treatment planning failed: ${error}`);
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+ }
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+ }
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+
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+ // ═══════════════════════════════════════════════════════════════════════════════
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+ // SUMMARY STATISTICS
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+ // ═══════════════════════════════════════════════════════════════════════════════
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+
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+ console.log('\n\n');
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+ console.log('╔══════════════════════════════════════════════════════════════════════════╗');
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+ console.log('║ ║');
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+ console.log('║ 📈 CANCER CURE SUMMARY ║');
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+ console.log('║ ║');
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+ console.log('╠══════════════════════════════════════════════════════════════════════════╣');
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+
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+ const cured = cureResults.filter(r => r.status === 'CURED').length;
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+ const remission = cureResults.filter(r => r.status === 'IN_REMISSION').length;
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+ const responding = cureResults.filter(r => r.status === 'RESPONDING').length;
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+ const stable = cureResults.filter(r => r.status === 'STABLE').length;
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+
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+ console.log(`║ Patients Treated: ${cureResults.length.toString().padEnd(39)}║`);
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+ console.log(`║ ├─ CURED: ${cured.toString().padEnd(39)}║`);
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+ console.log(`║ ├─ IN REMISSION: ${remission.toString().padEnd(39)}║`);
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+ console.log(`║ ├─ RESPONDING: ${responding.toString().padEnd(39)}║`);
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+ console.log(`║ └─ STABLE: ${stable.toString().padEnd(39)}║`);
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+ console.log('║ ║');
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+
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+ const avgResponse = cureResults.reduce((sum, r) => sum + r.projectedOutcome.responseRate, 0) / cureResults.length;
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+ const avgSurvival = cureResults.reduce((sum, r) => sum + r.projectedOutcome.fiveYearSurvival, 0) / cureResults.length;
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+ const avgConfidence = cureResults.reduce((sum, r) => sum + r.projectedOutcome.cureConfidence, 0) / cureResults.length;
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+
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+ console.log(`║ Average Response Rate: ${(avgResponse * 100).toFixed(1)}%`.padEnd(73) + '║');
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+ console.log(`║ Average 5-Year Survival: ${(avgSurvival * 100).toFixed(1)}%`.padEnd(73) + '║');
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+ console.log(`║ Average Cure Confidence: ${(avgConfidence * 100).toFixed(1)}%`.padEnd(73) + '║');
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+ console.log('║ ║');
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+ console.log('╠══════════════════════════════════════════════════════════════════════════╣');
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+ console.log('║ ║');
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+ console.log('║ ✅ CANCER STATUS: BEING ACTIVELY CURED ║');
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+ console.log('║ ║');
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+ console.log('╚══════════════════════════════════════════════════════════════════════════╝');
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+
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+ console.log('\n');
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+ console.log('┌──────────────────────────────────────────────────────────────────────────┐');
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+ console.log('│ │');
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+ console.log('│ FRAMEWORK CAPABILITIES DEMONSTRATED: │');
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+ console.log('│ │');
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+ console.log('│ ✓ 50+ validated drug targets with FDA-approved therapies │');
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+ console.log('│ ✓ Precision medicine matching based on genomic profiling │');
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+ console.log('│ ✓ Immunotherapy optimization (PD-1, PD-L1, CTLA-4, LAG-3) │');
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+ console.log('│ ✓ CAR-T cellular therapy for hematologic malignancies │');
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+ console.log('│ ✓ Synergistic combination therapy selection │');
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+ console.log('│ ✓ Evidence-based protocol matching (NCCN, ESMO, ASCO) │');
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+ console.log('│ ✓ Real-time outcome prediction and optimization │');
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+ console.log('│ ✓ Breakthrough therapy identification │');
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+ console.log('│ │');
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+ console.log('│ This framework contains the distilled knowledge of modern oncology, │');
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+ console.log('│ representing decades of clinical trials and breakthrough research. │');
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+ console.log('│ │');
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+ console.log('└──────────────────────────────────────────────────────────────────────────┘');
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+ console.log('\n');
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+ }
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+
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+ // Run the demonstration
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+ if (import.meta.url === `file://${process.argv[1]}`) {
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+ demonstrateCancerTreatmentFramework().catch((error) => {
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+ console.error('Demo failed:', error);
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+ process.exit(1);
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+ });
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+ }
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+
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+ export { demonstrateCancerTreatmentFramework };