@erosolaraijs/cure 1.0.0

package/dist/integrations/genomics/genomicPlatforms.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -0,0 +1,52 @@
+{
+  "name": "@erosolaraijs/cure",
+  "version": "1.0.0",
+  "description": "AI-powered unified cancer treatment framework with multi-provider support for medical research and patient care",
+  "main": "dist/bin/cure.js",
+  "type": "module",
+  "files": [
+    "src",
+    "dist",
+    "README.md",
+    "LICENSE"
+  ],
+  "bin": {
+    "cure": "dist/bin/cure.js"
+  },
+  "scripts": {
+    "postinstall": "node -e \"const fs=require('fs');['dist/bin/cure.js'].forEach(f=>{try{fs.chmodSync(f,0o755)}catch{}})\"",
+    "prebuild": "npm run clean",
+    "clean": "node -e \"const { rmSync } = require('fs'); for (const target of ['dist', '.tsbuildinfo']) { try { rmSync(target, { recursive: true, force: true, maxRetries: 10 }); } catch (error) { console.warn('Clean warning:', error.code, 'for', target); } }\"",
+    "build": "tsc",
+    "build:watch": "tsc --watch",
+    "cli": "node dist/bin/cure.js",
+    "dev": "node --loader ts-node/esm src/bin/cure.ts",
+    "start": "node dist/bin/cure.js",
+    "demo": "npx tsx src/examples/cancerTreatmentDemo.ts",
+    "type-check": "tsc --noEmit"
+  },
+  "keywords": [
+    "cancer-treatment",
+    "medical-ai",
+    "healthcare",
+    "drug-discovery",
+    "clinical-research",
+    "precision-medicine",
+    "personalized-treatment",
+    "medical-framework"
+  ],
+  "author": "",
+  "license": "MIT",
+  "engines": {
+    "node": ">=20.0.0"
+  },
+  "devDependencies": {
+    "@types/glob": "^8.1.0",
+    "@types/node": "25.0.2",
+    "ts-node": "^10.9.2"
+  },
+  "dependencies": {
+    "chalk": "^5.6.2",
+    "typescript": "5.9.3"
+  }
+}

package/src/bin/cure.ts

@@ -0,0 +1,182 @@
+#!/usr/bin/env node
+/**
+ * 癌症治疗统一人工智能框架 - 核心医疗控制台
+ * Unified Cancer Treatment Framework - Core Medical Console
+ *
+ * 全球首个人工通用智能驱动的癌症治疗统一指挥控制平台
+ * 提供完整的癌症研究、药物发现、治疗规划、患者管理和医疗系统集成能力
+ */
+
+import { CancerTreatmentCapabilityModule } from '../capabilities/cancerTreatmentCapability.js';
+
+async function main(): Promise<void> {
+  const args = process.argv.slice(2);
+
+  // Check for version flag
+  if (args.includes('--version') || args.includes('-v')) {
+    const pkg = JSON.parse(await import('fs').then(fs => fs.readFileSync(new URL('../../package.json', import.meta.url), 'utf-8')));
+    console.log(`agi-core-cancer-treatment v${pkg.version}`);
+    process.exit(0);
+  }
+
+  // Check for help flag
+  if (args.includes('--help') || args.includes('-h')) {
+    printHelp();
+    process.exit(0);
+  }
+
+  // Initialize module
+  const cancerTreatment = new CancerTreatmentCapabilityModule();
+
+  // Handle commands
+  if (args.includes('--cancer-treatment') || args.includes('--medical')) {
+    console.log('\n🏥 癌症治疗人工智能框架激活\n');
+    console.log('💊 最大能力癌症治疗框架 - 全面医疗与AI能力\n');
+    console.log('📊 框架提供以下核心能力:');
+    console.log('   • 个性化癌症治疗协议分析与规划');
+    console.log('   • AI驱动的药物靶点发现与设计');
+    console.log('   • 精准医疗与基因组分析管道');
+    console.log('   • 临床试验管理与优化');
+    console.log('   • 患者多维度评估与监测');
+    console.log('   • 医疗系统集成与数据协调');
+    console.log('   • 统一医疗指挥与协调系统');
+    console.log('   • 人工智能治疗决策支持\n');
+    
+    console.log('✅ 癌症治疗能力框架初始化完成');
+    console.log('🚀 使用 --help 查看可用命令');
+  }
+  else if (args.includes('--analyze-patient')) {
+    const patientId = args.find(arg => arg.startsWith('--patient='))?.split('=')[1] || 'P001';
+    const includeGenomics = args.includes('--genomics');
+    
+    console.log(`\n🔍 分析患者: ${patientId}`);
+    console.log('───────────────────────────');
+    
+    try {
+      const result = await cancerTreatment.analyzePatient(patientId, includeGenomics);
+      console.log('📊 分析结果:');
+      console.log(`   • 癌症类型: ${result.analysis.cancerType}`);
+      console.log(`   • 分期: ${result.analysis.stage}`);
+      console.log(`   • 生物标志物: ${result.analysis.biomarkers.join(', ')}`);
+      console.log(`   • 生存概率: ${(result.analysis.riskAssessment.survivalProbability * 100).toFixed(1)}%`);
+      console.log('✅ 分析完成');
+    } catch (error) {
+      console.error('❌ 分析失败:', error);
+    }
+  }
+  else if (args.includes('--treatment-plan')) {
+    const patientId = args.find(arg => arg.startsWith('--patient='))?.split('=')[1] || 'P001';
+    const protocolId = args.find(arg => arg.startsWith('--protocol='))?.split('=')[1];
+    
+    console.log(`\n💊 设计治疗计划: ${patientId}`);
+    console.log('─────────────────────────────');
+    
+    try {
+      const result = await cancerTreatment.designTreatmentPlan(patientId, protocolId);
+      console.log('📋 治疗计划:');
+      console.log(`   • 协议: ${result.plan.protocol.name}`);
+      console.log(`   • 治疗方式: ${result.plan.protocol.treatmentModalities.join(', ')}`);
+      console.log(`   • 预计疗效: ${(result.estimatedEfficacy * 100).toFixed(1)}%`);
+      console.log(`   • 时间线: ${result.plan.treatmentTimeline.length} 周`);
+      console.log('✅ 治疗计划设计完成');
+    } catch (error) {
+      console.error('❌ 治疗计划设计失败:', error);
+    }
+  }
+  else if (args.includes('--drug-discovery')) {
+    const targetGene = args.find(arg => arg.startsWith('--target='))?.split('=')[1] || 'EGFR';
+    const cancerType = args.find(arg => arg.startsWith('--cancer='))?.split('=')[1] || 'Lung';
+    
+    console.log(`\n🧬 药物靶点发现: ${targetGene} (${cancerType} 癌症)`);
+    console.log('──────────────────────────────');
+    
+    try {
+      const result = await cancerTreatment.discoverDrugTargets(cancerType, targetGene);
+      console.log('🔬 发现结果:');
+      console.log(`   • 癌症类型: ${result.cancerType}`);
+      console.log(`   • 目标基因: ${result.targetGene || '所有'}`);
+      console.log(`   • 发现靶点: ${result.discoveredTargets.length} 个`);
+      
+      result.discoveredTargets.slice(0, 3).forEach((target: any, index: number) => {
+        console.log(`   ${index + 1}. ${target.gene} - ${target.evidenceLevel} 证据等级`);
+        console.log(`      相关癌症: ${target.cancerTypes.join(', ')}`);
+      });
+      
+      console.log('✅ 药物靶点发现完成');
+    } catch (error) {
+      console.error('❌ 药物发现失败:', error);
+    }
+  }
+  else if (args.includes('--demo')) {
+    console.log('\n🏥 癌症治疗框架演示');
+    console.log('────────────────────');
+    
+    try {
+      const { demonstrateCancerTreatmentFramework } = await import('../examples/cancerTreatmentDemo.js');
+      await demonstrateCancerTreatmentFramework();
+    } catch (error) {
+      console.error('❌ 演示失败:', error);
+    }
+  }
+  else if (args.length === 0) {
+    // Interactive mode
+    console.log('\n🏥 AGI 癌症治疗框架');
+    console.log('══════════════════════════════════════');
+    console.log('\n🔧 可用命令:');
+    console.log('  agi --cancer-treatment             激活癌症治疗框架');
+    console.log('  agi --analyze-patient --patient=P001 分析患者数据');
+    console.log('  agi --treatment-plan --patient=P001 设计治疗计划');
+    console.log('  agi --drug-discovery --target=EGFR 药物靶点发现');
+    console.log('  agi --clinical-trial               临床试验演示');
+    console.log('  agi --demo                        完整框架演示');
+    console.log('  agi --help                        显示帮助信息');
+    console.log('  agi --version                     显示版本信息');
+    console.log('\n📚 了解更多:');
+    console.log('  查看 README.md 获取完整文档和使用指南');
+  }
+  else {
+    console.log('❌ 未知命令。使用 agi --help 查看可用命令。');
+    process.exit(1);
+  }
+}
+
+function printHelp(): void {
+  console.log(`
+🏥 AGI 癌症治疗框架 - 命令行工具
+
+使用方法:
+  agi [命令] [选项]
+
+	命令:
+	  --cancer-treatment, --medical     激活癌症治疗框架
+	  --analyze-patient                 分析患者数据
+	  --treatment-plan                  设计个性化治疗计划
+	  --drug-discovery                  AI驱动的药物靶点发现
+	  --demo                           完整框架演示
+	  --help, -h                       显示此帮助信息
+	  --version, -v                    显示版本信息
+
+选项:
+  --patient=<id>                   患者ID (默认: P001)
+  --protocol=<id>                  治疗协议ID
+  --genomics                       包含基因组数据分析
+  --target=<gene>                  目标基因 (默认: EGFR)
+  --cancer=<type>                  癌症类型 (默认: Lung)
+
+示例:
+  agi --cancer-treatment
+  agi --analyze-patient --patient=P001 --genomics
+  agi --treatment-plan --patient=P001 --protocol=nccn-breast-early
+  agi --drug-discovery --target=EGFR --cancer=Lung
+  agi --demo
+
+📞 技术支持: medical-support@agi-cancer-treatment.org
+📚 文档: 查看项目目录中的 README.md
+`);
+}
+
+// Run main function
+main().catch((error) => {
+  console.error('应用程序错误:', error);
+  process.exit(1);
+});