@datagrok/sequence-translator 1.0.16 → 1.1.0

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Files changed (92) hide show
  1. package/.eslintrc.json +4 -3
  2. package/CHANGELOG.md +3 -0
  3. package/detectors.js +8 -28
  4. package/dist/package-test.js +2 -72987
  5. package/dist/package-test.js.map +1 -0
  6. package/dist/package.js +2 -72192
  7. package/dist/package.js.map +1 -0
  8. package/files/axolabs-style.json +97 -0
  9. package/files/codes-to-symbols.json +66 -0
  10. package/files/formats-to-helm.json +59 -0
  11. package/files/linkers.json +22 -0
  12. package/files/monomer-lib.json +1094 -0
  13. package/link-bio +7 -0
  14. package/package.json +30 -26
  15. package/scripts/build-monomer-lib.py +391 -122
  16. package/src/demo/demo-st-ui.ts +71 -0
  17. package/src/demo/handle-error.ts +12 -0
  18. package/src/model/axolabs/axolabs-tab.ts +111 -0
  19. package/src/model/axolabs/const.ts +33 -0
  20. package/src/{axolabs → model/axolabs}/draw-svg.ts +1 -1
  21. package/src/{axolabs → model/axolabs}/helpers.ts +7 -5
  22. package/src/model/const.ts +19 -0
  23. package/src/model/data-loading-utils/const.ts +8 -0
  24. package/src/model/data-loading-utils/json-loader.ts +38 -0
  25. package/src/model/data-loading-utils/types.ts +30 -0
  26. package/src/model/format-translation/const.ts +8 -0
  27. package/src/model/format-translation/conversion-utils.ts +48 -0
  28. package/src/model/format-translation/format-converter.ts +107 -0
  29. package/src/model/helpers.ts +12 -0
  30. package/src/model/monomer-lib/const.ts +3 -0
  31. package/src/model/monomer-lib/lib-wrapper.ts +106 -0
  32. package/src/model/parsing-validation/format-detector.ts +57 -0
  33. package/src/model/parsing-validation/sequence-validator.ts +52 -0
  34. package/src/model/sequence-to-structure-utils/const.ts +1 -0
  35. package/src/{structures-works → model/sequence-to-structure-utils}/mol-transformations.ts +61 -87
  36. package/src/model/sequence-to-structure-utils/monomer-code-parser.ts +92 -0
  37. package/src/model/sequence-to-structure-utils/sdf-tab.ts +94 -0
  38. package/src/model/sequence-to-structure-utils/sequence-to-molfile.ts +409 -0
  39. package/src/package.ts +106 -77
  40. package/src/tests/const.ts +17 -0
  41. package/src/tests/smiles-tests.ts +32 -457
  42. package/src/view/const/main-tab.ts +3 -0
  43. package/src/view/const/view.ts +10 -0
  44. package/src/view/css/axolabs-tab.css +1 -0
  45. package/src/view/css/colored-text-input.css +27 -0
  46. package/src/view/css/main-tab.css +46 -0
  47. package/src/view/css/sdf-tab.css +39 -0
  48. package/src/view/monomer-lib-viewer/viewer.ts +22 -0
  49. package/src/view/tabs/axolabs.ts +720 -0
  50. package/src/view/tabs/main.ts +174 -0
  51. package/src/view/tabs/sdf.ts +173 -0
  52. package/src/view/utils/app-info-dialog.ts +18 -0
  53. package/src/view/utils/colored-input/colored-text-input.ts +56 -0
  54. package/src/view/utils/colored-input/input-painters.ts +44 -0
  55. package/src/view/utils/draw-molecule.ts +86 -0
  56. package/src/view/utils/molecule-img.ts +106 -0
  57. package/src/view/view.ts +129 -0
  58. package/tsconfig.json +12 -18
  59. package/webpack.config.js +17 -4
  60. package/README.md +0 -84
  61. package/css/style.css +0 -18
  62. package/img/Sequence Translator Axolabs.png +0 -0
  63. package/jest.config.js +0 -33
  64. package/setup-unlink-clean.cmd +0 -14
  65. package/setup.cmd +0 -14
  66. package/setup.sh +0 -37
  67. package/src/__jest__/remote.test.ts +0 -77
  68. package/src/__jest__/test-node.ts +0 -97
  69. package/src/apps/oligo-sd-file-app.ts +0 -58
  70. package/src/autostart/ICDs.ts +0 -3
  71. package/src/autostart/IDPs.ts +0 -3
  72. package/src/autostart/calculations.ts +0 -40
  73. package/src/autostart/constants.ts +0 -37
  74. package/src/autostart/registration.ts +0 -241
  75. package/src/autostart/salts.ts +0 -2
  76. package/src/autostart/sources.ts +0 -3
  77. package/src/autostart/users.ts +0 -3
  78. package/src/axolabs/constants.ts +0 -101
  79. package/src/axolabs/define-pattern.ts +0 -873
  80. package/src/helpers.ts +0 -28
  81. package/src/main/main-view.ts +0 -262
  82. package/src/structures-works/const.ts +0 -5
  83. package/src/structures-works/converters.ts +0 -323
  84. package/src/structures-works/from-monomers.ts +0 -267
  85. package/src/structures-works/map.ts +0 -720
  86. package/src/structures-works/save-sense-antisense.ts +0 -91
  87. package/src/structures-works/sequence-codes-tools.ts +0 -344
  88. package/src/utils/parse.ts +0 -27
  89. package/src/utils/sdf-add-columns.ts +0 -118
  90. package/src/utils/sdf-save-table.ts +0 -56
  91. package/test-SequenceTranslator-6288c2fbe346-cce4ac1d.html +0 -259
  92. package/vendors/openchemlib-full.js +0 -293

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