@datagrok/sequence-translator 1.0.16 → 1.1.0

package/.eslintrc.json

@@ -1,7 +1,7 @@
 {
   "env": {
     "browser": true,
-    "es2021": true
+    "es2022": true
   },
   "extends": [
     "google"
@@ -23,7 +23,8 @@
       "error",
       120
     ],
-    "no-unused-vars": "warn",
+    "no-unused-vars": "off",
+    "@typescript-eslint/no-unused-vars": "warn",
     "require-jsdoc": "off",
     "valid-jsdoc": "off",
     "spaced-comment": "off",
@@ -49,4 +50,4 @@
     }],
     "guard-for-in": "off"
   }
-}
+}

package/CHANGELOG.md

@@ -0,0 +1,3 @@
+# Sequence Translator changelog
+
+## 1.0.17 (2023-07-24) (WIP)

package/detectors.js

@@ -1,28 +1,8 @@
-class SequenceTranslatorPackageDetectors extends DG.Package {
-  isDnaNucleotides(sequence) {return /(\(invabasic\)|\(GalNAc-2-JNJ\)|A|T|G|C){6,}$/.test(sequence);}
-  isRnaNucleotides(sequence) {return /(\(invabasic\)|\(GalNAc-2-JNJ\)|A|U|G|C){6,}$/.test(sequence);}
-  isAsoGapmerBioSpring(sequence) {return /(\(invabasic\)|\(GalNAc-2-JNJ\)|\*|5|6|7|8|9|A|T|G|C){6,}$/.test(sequence);}
-  isAsoGapmerGcrs(sequence) {return /^(?=.*moe)(?=.*5mC)(?=.*ps){6,}/.test(sequence);}
-  isSiRnaBioSpring(sequence) {return /(\(invabasic\)|\(GalNAc-2-JNJ\)|\*|1|2|3|4|5|6|7|8){6,}$/.test(sequence);}
-  isSiRnaAxolabs(sequence) {return /(\(invabasic\)|\(GalNAc-2-JNJ\)|f|s|A|C|G|U|a|c|g|u){6,}$/.test(sequence);}
-  isSiRnaGcrs(sequence) {return /(\(invabasic\)|\(GalNAc-2-JNJ\)|f|m|p|s|A|C|G|U){6,}$/.test(sequence);}
-  isGcrs(sequence) {return /(\(invabasic\)|\(GalNAc-2-JNJ\)|f|m|p|s|A|C|G|U){6,}$/.test(sequence);}
-  isMermade12(sequence) {
-    return /(\(invabasic\)|\(GalNAc-2-JNJ\)|I|i|J|j|K|k|L|l|E|e|F|f|G|g|H|h|Q|q){6,}$/.test(sequence);
-  }
-  //tags: semTypeDetector
-  //input: column col
-  //output: string semType
-  detectNucleotides(col) {
-    if (col.type === DG.TYPE.STRING) {
-      if (DG.Detector.sampleCategories(col, (s) => this.isDnaNucleotides(s))) return 'DNA nucleotides';
-      if (DG.Detector.sampleCategories(col, (s) => this.isRnaNucleotides(s))) return 'RNA nucleotides';
-      if (DG.Detector.sampleCategories(col, (s) => this.isAsoGapmerBioSpring(s))) return 'BioSpring / Gapmers';
-      if (DG.Detector.sampleCategories(col, (s) => this.isAsoGapmerGcrs(s))) return 'GCRS / Gapmers';
-      if (DG.Detector.sampleCategories(col, (s) => this.isSiRnaBioSpring(s))) return 'BioSpring / siRNA';
-      if (DG.Detector.sampleCategories(col, (s) => this.isSiRnaAxolabs(s))) return 'Axolabs / siRNA';
-      if (DG.Detector.sampleCategories(col, (s) => this.isGcrs(s))) return 'GCRS';
-      if (DG.Detector.sampleCategories(col, (s) => this.isMermade12(s))) return 'Mermade 12 / siRNA';
-    }
-  }
-}
+/**
+ * The class contains semantic type detectors.
+ * Detectors are functions tagged with `DG.FUNC_TYPES.SEM_TYPE_DETECTOR`.
+ * See also: https://datagrok.ai/help/develop/how-to/define-semantic-type-detectors
+ * The class name is comprised of <PackageName> and the `PackageDetectors` suffix.
+ * Follow this naming convention to ensure that your detectors are properly loaded.
+ */
+