@cornerstonejs/tools 2.0.0-beta.6 → 2.0.0-beta.8

package/dist/esm/utilities/segmentation/findLargestBidirectional.js

@@ -0,0 +1,96 @@
+import { vec3 } from 'gl-matrix';
+import { createIsInSegment, isLineInSegment } from './isLineInSegment';
+const EPSILON = 1e-2;
+export default function findLargestBidirectional(contours, segVolumeId, segment) {
+    const { sliceContours } = contours;
+    const { segmentIndex, containedSegmentIndices } = segment;
+    let maxBidirectional;
+    const isInSegment = createIsInSegment(segVolumeId, segmentIndex, containedSegmentIndices);
+    for (const sliceContour of sliceContours) {
+        const bidirectional = createBidirectionalForSlice(sliceContour, isInSegment, maxBidirectional);
+        if (!bidirectional) {
+            continue;
+        }
+        maxBidirectional = bidirectional;
+    }
+    if (maxBidirectional) {
+        Object.assign(maxBidirectional, segment);
+    }
+    return maxBidirectional;
+}
+function createBidirectionalForSlice(sliceContour, isInSegment, currentMax = { maxMajor: 0, maxMinor: 0 }) {
+    const { points } = sliceContour.polyData;
+    const { maxMinor: currentMaxMinor, maxMajor: currentMaxMajor } = currentMax;
+    let maxMajor = currentMaxMajor * currentMaxMajor;
+    let maxMinor = currentMaxMinor * currentMaxMinor;
+    let maxMajorPoints;
+    for (let index1 = 0; index1 < points.length; index1++) {
+        for (let index2 = index1 + 1; index2 < points.length; index2++) {
+            const point1 = points[index1];
+            const point2 = points[index2];
+            const distance2 = vec3.sqrDist(point1, point2);
+            if (distance2 < maxMajor) {
+                continue;
+            }
+            if (distance2 - EPSILON < maxMajor + EPSILON && maxMajorPoints) {
+                continue;
+            }
+            if (!isInSegment.testCenter(point1, point2)) {
+                continue;
+            }
+            if (!isLineInSegment(point1, point2, isInSegment)) {
+                continue;
+            }
+            maxMajor = distance2 - EPSILON;
+            maxMajorPoints = [index1, index2];
+            maxMinor = 0;
+        }
+    }
+    if (!maxMajorPoints) {
+        return;
+    }
+    maxMajor = Math.sqrt(maxMajor + EPSILON);
+    const handle0 = points[maxMajorPoints[0]];
+    const handle1 = points[maxMajorPoints[1]];
+    const unitMajor = vec3.sub(vec3.create(), handle0, handle1);
+    vec3.scale(unitMajor, unitMajor, 1 / maxMajor);
+    let maxMinorPoints;
+    for (let index1 = 0; index1 < points.length; index1++) {
+        for (let index2 = index1 + 1; index2 < points.length; index2++) {
+            const point1 = points[index1];
+            const point2 = points[index2];
+            const distance2 = vec3.sqrDist(point1, point2);
+            if (distance2 <= maxMinor) {
+                continue;
+            }
+            const delta = vec3.sub(vec3.create(), point1, point2);
+            const dot = Math.abs(vec3.dot(delta, unitMajor)) / Math.sqrt(distance2);
+            if (dot > EPSILON) {
+                continue;
+            }
+            if (!isInSegment.testCenter(point1, point2)) {
+                continue;
+            }
+            if (!isLineInSegment(point1, point2, isInSegment)) {
+                continue;
+            }
+            maxMinor = distance2;
+            maxMinorPoints = [index1, index2];
+        }
+    }
+    if (!maxMinorPoints) {
+        return;
+    }
+    maxMinor = Math.sqrt(maxMinor);
+    const handle2 = points[maxMinorPoints[0]];
+    const handle3 = points[maxMinorPoints[1]];
+    const bidirectional = {
+        majorAxis: [handle0, handle1],
+        minorAxis: [handle2, handle3],
+        maxMajor,
+        maxMinor,
+        ...sliceContour,
+    };
+    return bidirectional;
+}
+//# sourceMappingURL=findLargestBidirectional.js.map

package/dist/esm/utilities/segmentation/findLargestBidirectional.js.map

@@ -0,0 +1 @@
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package/dist/esm/utilities/segmentation/floodFill.js

@@ -1,14 +1,14 @@
 function floodFill(getter, seed, options = {}) {
     const onFlood = options.onFlood;
     const onBoundary = options.onBoundary;
-    const equals = options.equals || defaultEquals;
+    const equals = options.equals;
     const diagonals = options.diagonals || false;
     const startNode = get(seed);
     const permutations = prunedPermutations();
     const stack = [];
     const flooded = [];
-    const visits = {};
-    const bounds = {};
+    const visits = new Set();
+    const bounds = new Map();
     stack.push({ currentArgs: seed });
     while (stack.length > 0) {
         flood(stack.pop());
@@ -33,14 +33,18 @@ function floodFill(getter, seed, options = {}) {
         }
     }
     function visited(key) {
-        return visits[key] === true;
+        const [x, y, z = 0] = key;
+        const iKey = x + 32768 + 65536 * (y + 32768 + 65536 * (z + 32768));
+        return visits.has(iKey);
     }
     function markAsVisited(key) {
-        visits[key] = true;
+        const [x, y, z = 0] = key;
+        const iKey = x + 32768 + 65536 * (y + 32768 + 65536 * (z + 32768));
+        visits.add(iKey);
     }
     function member(getArgs) {
-        const node = safely(get, [getArgs]);
-        return safely(equals, [node, startNode]);
+        const node = get(getArgs);
+        return equals ? equals(node, startNode) : node === startNode;
     }
     function markAsFlooded(getArgs) {
         flooded.push(getArgs);
@@ -49,7 +53,9 @@ function floodFill(getter, seed, options = {}) {
         }
     }
     function markAsBoundary(prevArgs) {
-        bounds[prevArgs] = prevArgs;
+        const [x, y, z = 0] = prevArgs;
+        const iKey = x + 32768 + 65536 * (y + 32768 + 65536 * (z + 32768));
+        bounds.set(iKey, prevArgs);
         if (onBoundary) {
             onBoundary(...prevArgs);
         }
@@ -70,14 +76,6 @@ function floodFill(getter, seed, options = {}) {
     function get(getArgs) {
         return getter(...getArgs);
     }
-    function safely(f, args) {
-        try {
-            return f(...args);
-        }
-        catch (error) {
-            return;
-        }
-    }
     function prunedPermutations() {
         const permutations = permute(seed.length);
         return permutations.filter(function (perm) {
@@ -99,12 +97,8 @@ function floodFill(getter, seed, options = {}) {
         return perms;
     }
     function boundaries() {
-        const array = [];
-        for (const key in bounds) {
-            if (bounds[key] !== undefined) {
-                array.unshift(bounds[key]);
-            }
-        }
+        const array = Array.from(bounds.values());
+        array.reverse();
         return array;
     }
 }

package/dist/esm/utilities/segmentation/floodFill.js.map

@@ -1 +1 @@
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package/dist/esm/utilities/segmentation/getDefaultRepresentationConfig.js.map

@@ -1 +1 @@
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+{"version":3,"file":"getDefaultRepresentationConfig.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/getDefaultRepresentationConfig.ts"],"names":[],"mappings":"AAAA,OAAO,wBAAwB,MAAM,kDAAkD,CAAC;AACxF,OAAO,0BAA0B,MAAM,yCAAyC,CAAC;AAQjF,MAAM,CAAC,OAAO,UAAU,8BAA8B,CACpD,YAA0B;IAE1B,MAAM,EAAE,IAAI,EAAE,kBAAkB,EAAE,GAAG,YAAY,CAAC;IAClD,QAAQ,kBAAkB,EAAE,CAAC;QAC3B,KAAK,0BAA0B,CAAC,QAAQ;YACtC,OAAO,wBAAwB,EAAE,CAAC;QACpC;YACE,MAAM,IAAI,KAAK,CAAC,gCAAgC,kBAAkB,EAAE,CAAC,CAAC;IAC1E,CAAC;AACH,CAAC"}

package/dist/esm/utilities/segmentation/getHoveredContourSegmentationAnnotation.js

@@ -0,0 +1,14 @@
+import { getAnnotation } from '../../stateManagement';
+import { getSegmentation } from '../../stateManagement/segmentation/segmentationState';
+export function getHoveredContourSegmentationAnnotation(segmentationId) {
+    const segmentation = getSegmentation(segmentationId);
+    const { annotationUIDsMap } = segmentation.representationData.CONTOUR;
+    for (const [segmentIndex, annotationUIDs] of annotationUIDsMap.entries()) {
+        const highlightedAnnotationUID = Array.from(annotationUIDs).find((annotationUID) => getAnnotation(annotationUID).highlighted);
+        if (highlightedAnnotationUID) {
+            return segmentIndex;
+        }
+    }
+    return undefined;
+}
+//# sourceMappingURL=getHoveredContourSegmentationAnnotation.js.map

package/dist/esm/utilities/segmentation/getHoveredContourSegmentationAnnotation.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"getHoveredContourSegmentationAnnotation.js","sourceRoot":"","sources":["../../../../src/utilities/segmentation/getHoveredContourSegmentationAnnotation.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,aAAa,EAAE,MAAM,uBAAuB,CAAC;AACtD,OAAO,EAAE,eAAe,EAAE,MAAM,sDAAsD,CAAC;AAQvF,MAAM,UAAU,uCAAuC,CAAC,cAAc;IACpE,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IACrD,MAAM,EAAE,iBAAiB,EAAE,GAAG,YAAY,CAAC,kBAAkB,CAAC,OAAO,CAAC;IAEtE,KAAK,MAAM,CAAC,YAAY,EAAE,cAAc,CAAC,IAAI,iBAAiB,CAAC,OAAO,EAAE,EAAE,CAAC;QACzE,MAAM,wBAAwB,GAAG,KAAK,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,IAAI,CAC9D,CAAC,aAAa,EAAE,EAAE,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,WAAW,CAC5D,CAAC;QAEF,IAAI,wBAAwB,EAAE,CAAC;YAC7B,OAAO,YAAY,CAAC;QACtB,CAAC;IACH,CAAC;IAED,OAAO,SAAS,CAAC;AACnB,CAAC"}

package/dist/esm/utilities/segmentation/getSegmentAtLabelmapBorder.js

@@ -0,0 +1,74 @@
+import { cache, utilities } from '@cornerstonejs/core';
+import { getSegmentation, getSegmentationIdRepresentations, } from '../../stateManagement/segmentation/segmentationState';
+import { isVolumeSegmentation } from '../../tools/segmentation/strategies/utils/stackVolumeCheck';
+export function getSegmentAtLabelmapBorder(segmentationId, worldPoint, { viewport, searchRadius }) {
+    const segmentation = getSegmentation(segmentationId);
+    const labelmapData = segmentation.representationData.LABELMAP;
+    if (isVolumeSegmentation(labelmapData)) {
+        const { volumeId } = labelmapData;
+        const segmentationVolume = cache.getVolume(volumeId);
+        if (!segmentationVolume) {
+            return;
+        }
+        const imageData = segmentationVolume.imageData;
+        const segmentIndex = imageData.getScalarValueFromWorld(worldPoint);
+        const canvasPoint = viewport.worldToCanvas(worldPoint);
+        const onEdge = isSegmentOnEdgeCanvas(canvasPoint, segmentIndex, viewport, imageData, searchRadius);
+        return onEdge ? segmentIndex : undefined;
+    }
+    const { imageIdReferenceMap } = labelmapData;
+    const currentImageId = viewport.getCurrentImageId();
+    const segmentationImageId = imageIdReferenceMap.get(currentImageId);
+    const image = cache.getImage(segmentationImageId);
+    if (!image) {
+        return;
+    }
+    const segmentationRepresentations = getSegmentationIdRepresentations(segmentation.segmentationId);
+    const { segmentationRepresentationUID } = segmentationRepresentations[0];
+    const segmentationActor = viewport.getActor(segmentationRepresentationUID);
+    const imageData = segmentationActor?.actor.getMapper().getInputData();
+    const indexIJK = utilities.transformWorldToIndex(imageData, worldPoint);
+    const dimensions = imageData.getDimensions();
+    const voxelManager = (imageData.voxelManager ||
+        utilities.VoxelManager.createVolumeVoxelManager(dimensions, imageData.getPointData().getScalars().getData()));
+    const segmentIndex = voxelManager.getAtIJKPoint(indexIJK);
+    const onEdge = isSegmentOnEdgeIJK(indexIJK, dimensions, voxelManager, segmentIndex);
+    return onEdge ? segmentIndex : undefined;
+}
+function isSegmentOnEdge(getNeighborIndex, segmentIndex, searchRadius = 1) {
+    const neighborRange = Array.from({ length: 2 * searchRadius + 1 }, (_, i) => i - searchRadius);
+    for (const deltaI of neighborRange) {
+        for (const deltaJ of neighborRange) {
+            for (const deltaK of neighborRange) {
+                if (deltaI === 0 && deltaJ === 0 && deltaK === 0) {
+                    continue;
+                }
+                const neighborIndex = getNeighborIndex(deltaI, deltaJ, deltaK);
+                if (neighborIndex !== undefined && segmentIndex !== neighborIndex) {
+                    return true;
+                }
+            }
+        }
+    }
+    return false;
+}
+function isSegmentOnEdgeIJK(indexIJK, dimensions, voxelManager, segmentIndex, searchRadius) {
+    const getNeighborIndex = (deltaI, deltaJ, deltaK) => {
+        const neighborIJK = [
+            indexIJK[0] + deltaI,
+            indexIJK[1] + deltaJ,
+            indexIJK[2] + deltaK,
+        ];
+        return voxelManager.getAtIJK(...neighborIJK);
+    };
+    return isSegmentOnEdge(getNeighborIndex, segmentIndex, searchRadius);
+}
+function isSegmentOnEdgeCanvas(canvasPoint, segmentIndex, viewport, imageData, searchRadius) {
+    const getNeighborIndex = (deltaI, deltaJ) => {
+        const neighborCanvas = [canvasPoint[0] + deltaI, canvasPoint[1] + deltaJ];
+        const worldPoint = viewport.canvasToWorld(neighborCanvas);
+        return imageData.getScalarValueFromWorld(worldPoint);
+    };
+    return isSegmentOnEdge(getNeighborIndex, segmentIndex, searchRadius);
+}
+//# sourceMappingURL=getSegmentAtLabelmapBorder.js.map

package/dist/esm/utilities/segmentation/getSegmentAtLabelmapBorder.js.map

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package/dist/esm/utilities/segmentation/getSegmentAtWorldPoint.js

@@ -0,0 +1,76 @@
+import { cache, utilities } from '@cornerstonejs/core';
+import { SegmentationRepresentations } from '../../enums';
+import { getSegmentation, getSegmentationIdRepresentations, } from '../../stateManagement/segmentation/segmentationState';
+import { isVolumeSegmentation } from '../../tools/segmentation/strategies/utils/stackVolumeCheck';
+import { getAnnotation } from '../../stateManagement';
+import { isPointInsidePolyline3D } from '../math/polyline';
+export function getSegmentAtWorldPoint(segmentationId, worldPoint, options = {}) {
+    const segmentation = getSegmentation(segmentationId);
+    const representationData = segmentation.representationData;
+    const desiredRepresentation = options?.representationType ?? Object.keys(representationData)[0];
+    if (!desiredRepresentation) {
+        throw new Error(`Segmentation ${segmentationId} does not have any representations`);
+    }
+    switch (desiredRepresentation) {
+        case SegmentationRepresentations.Labelmap:
+            return getSegmentAtWorldForLabelmap(segmentation, worldPoint, options);
+        case SegmentationRepresentations.Contour:
+            return getSegmentAtWorldForContour(segmentation, worldPoint, options);
+        default:
+            return;
+    }
+}
+export function getSegmentAtWorldForLabelmap(segmentation, worldPoint, { viewport }) {
+    const labelmapData = segmentation.representationData.LABELMAP;
+    if (isVolumeSegmentation(labelmapData)) {
+        const { volumeId } = labelmapData;
+        const segmentationVolume = cache.getVolume(volumeId);
+        if (!segmentationVolume) {
+            return;
+        }
+        const segmentIndex = segmentationVolume.imageData.getScalarValueFromWorld(worldPoint);
+        return segmentIndex;
+    }
+    const { imageIdReferenceMap } = labelmapData;
+    const currentImageId = viewport.getCurrentImageId();
+    const segmentationImageId = imageIdReferenceMap.get(currentImageId);
+    const image = cache.getImage(segmentationImageId);
+    if (!image) {
+        return;
+    }
+    const segmentationRepresentations = getSegmentationIdRepresentations(segmentation.segmentationId);
+    const { segmentationRepresentationUID } = segmentationRepresentations[0];
+    const segmentationActor = viewport.getActor(segmentationRepresentationUID);
+    const imageData = segmentationActor?.actor.getMapper().getInputData();
+    const indexIJK = utilities.transformWorldToIndex(imageData, worldPoint);
+    const dimensions = imageData.getDimensions();
+    const voxelManager = (imageData.voxelManager ||
+        utilities.VoxelManager.createVolumeVoxelManager(dimensions, imageData.getPointData().getScalars().getData()));
+    const segmentIndex = voxelManager.getAtIJKPoint(indexIJK);
+    return segmentIndex;
+}
+export function getSegmentAtWorldForContour(segmentation, worldPoint, { viewport }) {
+    const contourData = segmentation.representationData.CONTOUR;
+    const segmentIndices = Array.from(contourData.annotationUIDsMap.keys());
+    const { viewPlaneNormal } = viewport.getCamera();
+    for (const segmentIndex of segmentIndices) {
+        const annotationsSet = contourData.annotationUIDsMap.get(segmentIndex);
+        if (!annotationsSet) {
+            continue;
+        }
+        for (const annotationUID of annotationsSet) {
+            const annotation = getAnnotation(annotationUID);
+            if (!annotation) {
+                continue;
+            }
+            const { polyline } = annotation.data.contour;
+            if (!utilities.isEqual(viewPlaneNormal, annotation.metadata.viewPlaneNormal)) {
+                continue;
+            }
+            if (isPointInsidePolyline3D(worldPoint, polyline)) {
+                return Number(segmentIndex);
+            }
+        }
+    }
+}
+//# sourceMappingURL=getSegmentAtWorldPoint.js.map

package/dist/esm/utilities/segmentation/getSegmentAtWorldPoint.js.map

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package/dist/esm/utilities/segmentation/getUniqueSegmentIndices.js

@@ -0,0 +1,103 @@
+import { cache } from '@cornerstonejs/core';
+import { getSegmentation } from '../../stateManagement/segmentation/segmentationState';
+import { isVolumeSegmentation } from '../../tools/segmentation/strategies/utils/stackVolumeCheck';
+import { SegmentationRepresentations } from '../../enums';
+const segmentIndicesCache = new Map();
+export const setSegmentationDirty = (segmentationId) => {
+    const cached = segmentIndicesCache.get(segmentationId);
+    if (cached) {
+        cached.isDirty = true;
+    }
+};
+export const setSegmentationClean = (segmentationId) => {
+    const cached = segmentIndicesCache.get(segmentationId);
+    if (cached) {
+        cached.isDirty = false;
+    }
+};
+function getCachedSegmentIndices(segmentationId) {
+    const cached = segmentIndicesCache.get(segmentationId);
+    if (cached && !cached.isDirty) {
+        return cached.indices;
+    }
+    return null;
+}
+function getUniqueSegmentIndices(segmentationId) {
+    const cachedResult = getCachedSegmentIndices(segmentationId);
+    if (cachedResult) {
+        return cachedResult;
+    }
+    const segmentation = getSegmentation(segmentationId);
+    if (!segmentation) {
+        throw new Error(`No segmentation found for segmentationId ${segmentationId}`);
+    }
+    let indices;
+    switch (segmentation.type) {
+        case SegmentationRepresentations.Labelmap:
+            indices = handleLabelmapSegmentation(segmentation, segmentationId);
+            break;
+        case SegmentationRepresentations.Contour:
+            indices = handleContourSegmentation(segmentation);
+            break;
+        case SegmentationRepresentations.Surface:
+            indices = handleSurfaceSegmentation(segmentation);
+            break;
+        default:
+            throw new Error(`Unsupported segmentation type: ${segmentation.type}`);
+    }
+    segmentIndicesCache.set(segmentationId, { indices, isDirty: false });
+    return indices;
+}
+function handleLabelmapSegmentation(segmentation, segmentationId) {
+    const labelmapData = segmentation.representationData[SegmentationRepresentations.Labelmap];
+    const keySet = new Set();
+    if (isVolumeSegmentation(labelmapData)) {
+        addVolumeSegmentIndices(keySet, segmentationId);
+    }
+    else {
+        addImageSegmentIndices(keySet, labelmapData.imageIdReferenceMap);
+    }
+    return Array.from(keySet)
+        .map(Number)
+        .sort((a, b) => a - b);
+}
+function addVolumeSegmentIndices(keySet, segmentationId) {
+    const volume = cache.getVolume(segmentationId);
+    const scalarData = volume.getScalarData();
+    scalarData.forEach((segmentIndex) => {
+        if (segmentIndex !== 0) {
+            keySet.add(segmentIndex);
+        }
+    });
+}
+function addImageSegmentIndices(keySet, imageIdReferenceMap) {
+    imageIdReferenceMap.forEach((segmentationImageId) => {
+        const image = cache.getImage(segmentationImageId);
+        const scalarData = image.getPixelData();
+        scalarData.forEach((segmentIndex) => {
+            if (segmentIndex !== 0) {
+                keySet.add(segmentIndex);
+            }
+        });
+    });
+}
+function handleContourSegmentation(segmentation) {
+    const { annotationUIDsMap, geometryIds } = segmentation.representationData.CONTOUR || {};
+    if (!geometryIds) {
+        throw new Error(`No geometryIds found for segmentationId ${segmentation.segmentationId}`);
+    }
+    const indices = new Set([...annotationUIDsMap.keys()]);
+    geometryIds.forEach((geometryId) => {
+        const geometry = cache.getGeometry(geometryId);
+        indices.add(geometry.data.getSegmentIndex());
+    });
+    return Array.from(indices).sort((a, b) => a - b);
+}
+function handleSurfaceSegmentation(segmentation) {
+    const geometryIds = segmentation.representationData.SURFACE?.geometryIds ?? [];
+    return Array.from(geometryIds.keys())
+        .map(Number)
+        .sort((a, b) => a - b);
+}
+export { getUniqueSegmentIndices };
+//# sourceMappingURL=getUniqueSegmentIndices.js.map

package/dist/esm/utilities/segmentation/getUniqueSegmentIndices.js.map

@@ -0,0 +1 @@
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package/dist/esm/utilities/segmentation/index.js

@@ -9,5 +9,15 @@ import floodFill from './floodFill';
 import { getBrushSizeForToolGroup, setBrushSizeForToolGroup, } from './brushSizeForToolGroup';
 import { getBrushThresholdForToolGroup, setBrushThresholdForToolGroup, } from './brushThresholdForToolGroup';
 import thresholdSegmentationByRange from './thresholdSegmentationByRange';
-export { thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, rectangleROIThresholdVolumeByRange, triggerSegmentationRender, floodFill, getBrushSizeForToolGroup, setBrushSizeForToolGroup, getBrushThresholdForToolGroup, setBrushThresholdForToolGroup, thresholdSegmentationByRange, };
+import { createImageIdReferenceMap } from './createImageIdReferenceMap';
+import contourAndFindLargestBidirectional from './contourAndFindLargestBidirectional';
+import createBidirectionalToolData from './createBidirectionalToolData';
+import segmentContourAction from './segmentContourAction';
+import { invalidateBrushCursor } from './invalidateBrushCursor';
+import { getUniqueSegmentIndices } from './getUniqueSegmentIndices';
+import { getSegmentAtWorldPoint } from './getSegmentAtWorldPoint';
+import { getSegmentAtLabelmapBorder } from './getSegmentAtLabelmapBorder';
+import { getHoveredContourSegmentationAnnotation } from './getHoveredContourSegmentationAnnotation';
+import { getBrushToolInstances } from './utilities';
+export { thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, rectangleROIThresholdVolumeByRange, triggerSegmentationRender, floodFill, getBrushSizeForToolGroup, setBrushSizeForToolGroup, getBrushThresholdForToolGroup, setBrushThresholdForToolGroup, thresholdSegmentationByRange, createImageIdReferenceMap, contourAndFindLargestBidirectional, createBidirectionalToolData, segmentContourAction, invalidateBrushCursor, getUniqueSegmentIndices, getSegmentAtWorldPoint, getSegmentAtLabelmapBorder, getHoveredContourSegmentationAnnotation, getBrushToolInstances, };
 //# sourceMappingURL=index.js.map

package/dist/esm/utilities/segmentation/index.js.map

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package/dist/esm/utilities/segmentation/invalidateBrushCursor.js

@@ -0,0 +1,24 @@
+import { getToolGroup } from '../../store/ToolGroupManager';
+import triggerAnnotationRenderForViewportIds from '../triggerAnnotationRenderForViewportIds';
+import { getRenderingEngine } from '@cornerstonejs/core';
+import { getBrushToolInstances } from './utilities';
+export function invalidateBrushCursor(toolGroupId) {
+    const toolGroup = getToolGroup(toolGroupId);
+    if (toolGroup === undefined) {
+        return;
+    }
+    const brushBasedToolInstances = getBrushToolInstances(toolGroupId);
+    brushBasedToolInstances.forEach((tool) => {
+        tool.invalidateBrushCursor();
+    });
+    const viewportsInfo = toolGroup.getViewportsInfo();
+    const viewportsInfoArray = Object.keys(viewportsInfo).map((key) => viewportsInfo[key]);
+    if (!viewportsInfoArray.length) {
+        return;
+    }
+    const { renderingEngineId } = viewportsInfoArray[0];
+    const viewportIds = toolGroup.getViewportIds();
+    const renderingEngine = getRenderingEngine(renderingEngineId);
+    triggerAnnotationRenderForViewportIds(renderingEngine, viewportIds);
+}
+//# sourceMappingURL=invalidateBrushCursor.js.map

package/dist/esm/utilities/segmentation/invalidateBrushCursor.js.map

@@ -0,0 +1 @@
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package/dist/esm/utilities/segmentation/isLineInSegment.js

@@ -0,0 +1,50 @@
+import { cache } from '@cornerstonejs/core';
+import { vec3 } from 'gl-matrix';
+export default function isLineInSegment(point1, point2, isInSegment) {
+    const ijk1 = isInSegment.toIJK(point1);
+    const ijk2 = isInSegment.toIJK(point2);
+    const testPoint = vec3.create();
+    const { testIJK } = isInSegment;
+    const delta = vec3.sub(vec3.create(), ijk1, ijk2);
+    const testSize = Math.round(Math.max(...delta.map(Math.abs)));
+    if (testSize < 2) {
+        return true;
+    }
+    const unitDelta = vec3.scale(vec3.create(), delta, 1 / testSize);
+    for (let i = 1; i < testSize; i++) {
+        vec3.scaleAndAdd(testPoint, ijk2, unitDelta, i);
+        if (!testIJK(testPoint)) {
+            return false;
+        }
+    }
+    return true;
+}
+function createIsInSegment(segVolumeId, segmentIndex, containedSegmentIndices) {
+    const vol = cache.getVolume(segVolumeId);
+    if (!vol) {
+        console.warn(`No volume found for ${segVolumeId}`);
+        return;
+    }
+    const segData = vol.imageData.getPointData().getScalars().getData();
+    const width = vol.dimensions[0];
+    const pixelsPerSlice = width * vol.dimensions[1];
+    return {
+        testCenter: (point1, point2) => {
+            const point = vec3.add(vec3.create(), point1, point2).map((it) => it / 2);
+            const ijk = vol.imageData.worldToIndex(point).map(Math.round);
+            const [i, j, k] = ijk;
+            const index = i + j * width + k * pixelsPerSlice;
+            const value = segData[index];
+            return value === segmentIndex || containedSegmentIndices?.has(value);
+        },
+        toIJK: (point) => vol.imageData.worldToIndex(point),
+        testIJK: (ijk) => {
+            const [i, j, k] = ijk;
+            const index = Math.round(i) + Math.round(j) * width + Math.round(k) * pixelsPerSlice;
+            const value = segData[index];
+            return value === segmentIndex || containedSegmentIndices?.has(value);
+        },
+    };
+}
+export { createIsInSegment, isLineInSegment };
+//# sourceMappingURL=isLineInSegment.js.map

package/dist/esm/utilities/segmentation/isLineInSegment.js.map

@@ -0,0 +1 @@
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