npm - @cornerstonejs/tools - Versions diffs - 2.0.0-beta.6 → 2.0.0-beta.8 - Mend

@cornerstonejs/tools 2.0.0-beta.6 → 2.0.0-beta.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (3664) hide show

package/dist/esm/tools/annotation/ProbeTool.js CHANGED Viewed

@@ -1,11 +1,14 @@
 import { vec2 } from 'gl-matrix';
-import { getEnabledElement, VolumeViewport, triggerEvent, eventTarget, utilities as csUtils, utilities, } from '@cornerstonejs/core';
+import { getEnabledElement, VolumeViewport, utilities as csUtils, } from '@cornerstonejs/core';
 import { AnnotationTool } from '../base';
 import { addAnnotation, getAnnotations, removeAnnotation, } from '../../stateManagement/annotation/annotationState';
+import { triggerAnnotationCompleted, triggerAnnotationModified, } from '../../stateManagement/annotation/helpers/state';
+import { getCalibratedProbeUnitsAndValue } from '../../utilities/getCalibratedUnits';
 import { drawHandles as drawHandlesSvg, drawTextBox as drawTextBoxSvg, } from '../../drawingSvg';
 import { state } from '../../store';
 import { Events } from '../../enums';
 import { getViewportIdsWithToolToRender } from '../../utilities/viewportFilters';
+import { roundNumber } from '../../utilities';
 import { resetElementCursor, hideElementCursor, } from '../../cursors/elementCursor';
 import triggerAnnotationRenderForViewportIds from '../../utilities/triggerAnnotationRenderForViewportIds';
 import { getModalityUnit, } from '../../utilities/getModalityUnit';
@@ -65,9 +68,7 @@ class ProbeTool extends AnnotationTool {
             const eventDetail = evt.detail;
             const { element } = eventDetail;
             const { annotation, viewportIdsToRender, newAnnotation } = this.editData;
-            const enabledElement = getEnabledElement(element);
-            const { renderingEngine } = enabledElement;
-            const { viewportId } = enabledElement;
+            const { viewportId, renderingEngine } = getEnabledElement(element);
             this.eventDispatchDetail = {
                 viewportId,
                 renderingEngineId: renderingEngine.id,
@@ -82,11 +83,7 @@ class ProbeTool extends AnnotationTool {
             }
             triggerAnnotationRenderForViewportIds(renderingEngine, viewportIdsToRender);
             if (newAnnotation) {
-                const eventType = Events.ANNOTATION_COMPLETED;
-                const eventDetail = {
-                    annotation,
-                };
-                triggerEvent(eventTarget, eventType, eventDetail);
+                triggerAnnotationCompleted(annotation);
             }
         };
         this._dragCallback = (evt) => {
@@ -111,15 +108,10 @@ class ProbeTool extends AnnotationTool {
                 const { data } = annotation;
                 annotation.highlighted = false;
                 data.handles.activeHandleIndex = null;
-                const enabledElement = getEnabledElement(element);
-                const { renderingEngine } = enabledElement;
+                const { renderingEngine } = getEnabledElement(element);
                 triggerAnnotationRenderForViewportIds(renderingEngine, viewportIdsToRender);
                 if (newAnnotation) {
-                    const eventType = Events.ANNOTATION_COMPLETED;
-                    const eventDetail = {
-                        annotation,
-                    };
-                    triggerEvent(eventTarget, eventType, eventDetail);
+                    triggerAnnotationCompleted(annotation);
                 }
                 this.editData = null;
                 return annotation.annotationUID;
@@ -169,7 +161,10 @@ class ProbeTool extends AnnotationTool {
                 const point = data.handles.points[0];
                 const canvasCoordinates = viewport.worldToCanvas(point);
                 styleSpecifier.annotationUID = annotationUID;
-                const color = this.getStyle('color', styleSpecifier, annotation);
+                const { color } = this.getAnnotationStyle({ annotation, styleSpecifier });
+                if (!data.cachedStats) {
+                    data.cachedStats = {};
+                }
                 if (!data.cachedStats[targetId] ||
                     data.cachedStats[targetId].value == null) {
                     data.cachedStats[targetId] = {
@@ -256,7 +251,8 @@ class ProbeTool extends AnnotationTool {
     }
     _calculateCachedStats(annotation, renderingEngine, enabledElement) {
         const data = annotation.data;
-        const { viewportId, renderingEngineId, viewport } = enabledElement;
+        const { renderingEngineId, viewport } = enabledElement;
+        const { element } = viewport;
         const worldPos = data.handles.points[0];
         const { cachedStats } = data;
         const targetIds = Object.keys(cachedStats);
@@ -277,19 +273,42 @@ class ProbeTool extends AnnotationTool {
             index[0] = Math.round(index[0]);
             index[1] = Math.round(index[1]);
             index[2] = Math.round(index[2]);
+            const samplesPerPixel = scalarData.length / dimensions[2] / dimensions[1] / dimensions[0];
             if (csUtils.indexWithinDimensions(index, dimensions)) {
                 this.isHandleOutsideImage = false;
-                const yMultiple = dimensions[0];
-                const zMultiple = dimensions[0] * dimensions[1];
-                const value = scalarData[index[2] * zMultiple + index[1] * yMultiple + index[0]];
+                const yMultiple = dimensions[0] * samplesPerPixel;
+                const zMultiple = dimensions[0] * dimensions[1] * samplesPerPixel;
+                const baseIndex = index[2] * zMultiple +
+                    index[1] * yMultiple +
+                    index[0] * samplesPerPixel;
+                let value = samplesPerPixel > 2
+                    ? [
+                        scalarData[baseIndex],
+                        scalarData[baseIndex + 1],
+                        scalarData[baseIndex + 2],
+                    ]
+                    : scalarData[baseIndex];
                 if (targetId.startsWith('imageId:')) {
                     const imageId = targetId.split('imageId:')[1];
                     const imageURI = csUtils.imageIdToURI(imageId);
-                    const viewports = utilities.getViewportsWithImageURI(imageURI, renderingEngineId);
+                    const viewports = csUtils.getViewportsWithImageURI(imageURI, renderingEngineId);
                     const viewport = viewports[0];
                     index[2] = viewport.getCurrentImageIdIndex();
                 }
-                const modalityUnit = getModalityUnit(modality, annotation.metadata.referencedImageId, modalityUnitOptions);
+                let modalityUnit;
+                if (modality === 'US') {
+                    const calibratedResults = getCalibratedProbeUnitsAndValue(image, [
+                        index,
+                    ]);
+                    const hasEnhancedRegionValues = calibratedResults.values.every((value) => value !== null);
+                    value = hasEnhancedRegionValues ? calibratedResults.values : value;
+                    modalityUnit = hasEnhancedRegionValues
+                        ? calibratedResults.units
+                        : 'raw';
+                }
+                else {
+                    modalityUnit = getModalityUnit(modality, annotation.metadata.referencedImageId, modalityUnitOptions);
+                }
                 cachedStats[targetId] = {
                     index,
                     value,
@@ -305,13 +324,7 @@ class ProbeTool extends AnnotationTool {
                 };
             }
             annotation.invalidated = false;
-            const eventType = Events.ANNOTATION_MODIFIED;
-            const eventDetail = {
-                annotation,
-                viewportId,
-                renderingEngineId,
-            };
-            triggerEvent(eventTarget, eventType, eventDetail);
+            triggerAnnotationModified(annotation, element);
         }
         return cachedStats;
     }
@@ -324,7 +337,14 @@ function defaultGetTextLines(data, targetId) {
     }
     const textLines = [];
     textLines.push(`(${index[0]}, ${index[1]}, ${index[2]})`);
-    textLines.push(`${value.toFixed(2)} ${modalityUnit}`);
+    if (value instanceof Array && modalityUnit instanceof Array) {
+        for (let i = 0; i < value.length; i++) {
+            textLines.push(`${roundNumber(value[i])} ${modalityUnit[i]}`);
+        }
+    }
+    else {
+        textLines.push(`${roundNumber(value)} ${modalityUnit}`);
+    }
     return textLines;
 }
 ProbeTool.toolName = 'Probe';

package/dist/esm/tools/annotation/ProbeTool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/tools/annotation/RectangleROITool.js CHANGED Viewed

@@ -1,12 +1,13 @@
 import { AnnotationTool } from '../base';
-import { getEnabledElement, VolumeViewport, triggerEvent, eventTarget, utilities as csUtils, } from '@cornerstonejs/core';
-import { getCalibratedAreaUnits, getCalibratedScale, } from '../../utilities/getCalibratedUnits';
-import roundNumber from '../../utilities/roundNumber';
+import { getEnabledElement, VolumeViewport, utilities as csUtils, } from '@cornerstonejs/core';
+import { getCalibratedLengthUnitsAndScale } from '../../utilities/getCalibratedUnits';
+import { roundNumber } from '../../utilities';
 import throttle from '../../utilities/throttle';
 import { addAnnotation, getAnnotations, removeAnnotation, } from '../../stateManagement';
 import { isAnnotationLocked } from '../../stateManagement/annotation/annotationLocking';
 import { isAnnotationVisible } from '../../stateManagement/annotation/annotationVisibility';
-import { drawHandles as drawHandlesSvg, drawLinkedTextBox as drawLinkedTextBoxSvg, drawRect as drawRectSvg, } from '../../drawingSvg';
+import { triggerAnnotationCompleted, triggerAnnotationModified, } from '../../stateManagement/annotation/helpers/state';
+import { drawHandles as drawHandlesSvg, drawLinkedTextBox as drawLinkedTextBoxSvg, drawRectByCoordinates as drawRectSvg, } from '../../drawingSvg';
 import { state } from '../../store';
 import { Events } from '../../enums';
 import { getViewportIdsWithToolToRender } from '../../utilities/viewportFilters';
@@ -51,6 +52,7 @@ class RectangleROITool extends AnnotationTool {
                     viewUp: [...viewUp],
                     FrameOfReferenceUID,
                     referencedImageId,
+                    ...viewport.getViewReference({ points: [worldPos] }),
                 },
                 data: {
                     label: '',
@@ -167,8 +169,7 @@ class RectangleROITool extends AnnotationTool {
             this._deactivateModify(element);
             this._deactivateDraw(element);
             resetElementCursor(element);
-            const enabledElement = getEnabledElement(element);
-            const { renderingEngine } = enabledElement;
+            const { renderingEngine } = getEnabledElement(element);
             this.editData = null;
             this.isDrawing = false;
             if (this.isHandleOutsideImage &&
@@ -177,11 +178,7 @@ class RectangleROITool extends AnnotationTool {
             }
             triggerAnnotationRenderForViewportIds(renderingEngine, viewportIdsToRender);
             if (newAnnotation) {
-                const eventType = Events.ANNOTATION_COMPLETED;
-                const eventDetail = {
-                    annotation,
-                };
-                triggerEvent(eventTarget, eventType, eventDetail);
+                triggerAnnotationCompleted(annotation);
             }
         };
         this._dragCallback = (evt) => {
@@ -273,15 +270,10 @@ class RectangleROITool extends AnnotationTool {
                 const { data } = annotation;
                 annotation.highlighted = false;
                 data.handles.activeHandleIndex = null;
-                const enabledElement = getEnabledElement(element);
-                const { renderingEngine } = enabledElement;
+                const { renderingEngine } = getEnabledElement(element);
                 triggerAnnotationRenderForViewportIds(renderingEngine, viewportIdsToRender);
                 if (newAnnotation) {
-                    const eventType = Events.ANNOTATION_COMPLETED;
-                    const eventDetail = {
-                        annotation,
-                    };
-                    triggerEvent(eventTarget, eventType, eventDetail);
+                    triggerAnnotationCompleted(annotation);
                 }
                 this.editData = null;
                 return annotation.annotationUID;
@@ -350,9 +342,10 @@ class RectangleROITool extends AnnotationTool {
                 const { points, activeHandleIndex } = data.handles;
                 const canvasCoordinates = points.map((p) => viewport.worldToCanvas(p));
                 styleSpecifier.annotationUID = annotationUID;
-                const lineWidth = this.getStyle('lineWidth', styleSpecifier, annotation);
-                const lineDash = this.getStyle('lineDash', styleSpecifier, annotation);
-                const color = this.getStyle('color', styleSpecifier, annotation);
+                const { color, lineWidth, lineDash } = this.getAnnotationStyle({
+                    annotation,
+                    styleSpecifier,
+                });
                 const { viewPlaneNormal, viewUp } = viewport.getCamera();
                 if (!data.cachedStats[targetId] ||
                     data.cachedStats[targetId].areaUnit == null) {
@@ -407,7 +400,7 @@ class RectangleROITool extends AnnotationTool {
                 }
                 const dataId = `${annotationUID}-rect`;
                 const rectangleUID = '0';
-                drawRectSvg(svgDrawingHelper, annotationUID, rectangleUID, canvasCoordinates[0], canvasCoordinates[3], {
+                drawRectSvg(svgDrawingHelper, annotationUID, rectangleUID, canvasCoordinates, {
                     color,
                     lineDash,
                     lineWidth,
@@ -460,7 +453,8 @@ class RectangleROITool extends AnnotationTool {
         };
         this._calculateCachedStats = (annotation, viewPlaneNormal, viewUp, renderingEngine, enabledElement) => {
             const { data } = annotation;
-            const { viewportId, renderingEngineId, viewport } = enabledElement;
+            const { viewport } = enabledElement;
+            const { element } = viewport;
             const worldPos1 = data.handles.points[0];
             const worldPos2 = data.handles.points[3];
             const { cachedStats } = data;
@@ -472,30 +466,30 @@ class RectangleROITool extends AnnotationTool {
                     continue;
                 }
                 const { dimensions, imageData, metadata } = image;
-                const scalarData = 'getScalarData' in image ? image.getScalarData() : image.scalarData;
-                const worldPos1Index = transformWorldToIndex(imageData, worldPos1);
-                worldPos1Index[0] = Math.floor(worldPos1Index[0]);
-                worldPos1Index[1] = Math.floor(worldPos1Index[1]);
-                worldPos1Index[2] = Math.floor(worldPos1Index[2]);
-                const worldPos2Index = transformWorldToIndex(imageData, worldPos2);
-                worldPos2Index[0] = Math.floor(worldPos2Index[0]);
-                worldPos2Index[1] = Math.floor(worldPos2Index[1]);
-                worldPos2Index[2] = Math.floor(worldPos2Index[2]);
-                if (this._isInsideVolume(worldPos1Index, worldPos2Index, dimensions)) {
+                const pos1Index = transformWorldToIndex(imageData, worldPos1);
+                pos1Index[0] = Math.floor(pos1Index[0]);
+                pos1Index[1] = Math.floor(pos1Index[1]);
+                pos1Index[2] = Math.floor(pos1Index[2]);
+                const pos2Index = transformWorldToIndex(imageData, worldPos2);
+                pos2Index[0] = Math.floor(pos2Index[0]);
+                pos2Index[1] = Math.floor(pos2Index[1]);
+                pos2Index[2] = Math.floor(pos2Index[2]);
+                if (this._isInsideVolume(pos1Index, pos2Index, dimensions)) {
                     this.isHandleOutsideImage = false;
-                    const iMin = Math.min(worldPos1Index[0], worldPos2Index[0]);
-                    const iMax = Math.max(worldPos1Index[0], worldPos2Index[0]);
-                    const jMin = Math.min(worldPos1Index[1], worldPos2Index[1]);
-                    const jMax = Math.max(worldPos1Index[1], worldPos2Index[1]);
-                    const kMin = Math.min(worldPos1Index[2], worldPos2Index[2]);
-                    const kMax = Math.max(worldPos1Index[2], worldPos2Index[2]);
+                    const iMin = Math.min(pos1Index[0], pos2Index[0]);
+                    const iMax = Math.max(pos1Index[0], pos2Index[0]);
+                    const jMin = Math.min(pos1Index[1], pos2Index[1]);
+                    const jMax = Math.max(pos1Index[1], pos2Index[1]);
+                    const kMin = Math.min(pos1Index[2], pos2Index[2]);
+                    const kMax = Math.max(pos1Index[2], pos2Index[2]);
                     const boundsIJK = [
                         [iMin, iMax],
                         [jMin, jMax],
                         [kMin, kMax],
                     ];
                     const { worldWidth, worldHeight } = getWorldWidthAndHeightFromCorners(viewPlaneNormal, viewUp, worldPos1, worldPos2);
-                    const scale = getCalibratedScale(image);
+                    const handles = [pos1Index, pos2Index];
+                    const { scale, areaUnits } = getCalibratedLengthUnitsAndScale(image, handles);
                     const area = Math.abs(worldWidth * worldHeight) / (scale * scale);
                     const modalityUnitOptions = {
                         isPreScaled: isViewportPreScaled(viewport, targetId),
@@ -507,12 +501,12 @@ class RectangleROITool extends AnnotationTool {
                     cachedStats[targetId] = {
                         Modality: metadata.Modality,
                         area,
-                        mean: stats[1]?.value,
-                        stdDev: stats[2]?.value,
-                        max: stats[0]?.value,
-                        statsArray: stats,
+                        mean: stats.mean?.value,
+                        stdDev: stats.stdDev?.value,
+                        max: stats.max?.value,
+                        statsArray: stats.array,
                         pointsInShape: pointsInShape,
-                        areaUnit: getCalibratedAreaUnits(null, image),
+                        areaUnit: areaUnits,
                         modalityUnit,
                     };
                 }
@@ -524,13 +518,7 @@ class RectangleROITool extends AnnotationTool {
                 }
             }
             annotation.invalidated = false;
-            const eventType = Events.ANNOTATION_MODIFIED;
-            const eventDetail = {
-                annotation,
-                viewportId,
-                renderingEngineId,
-            };
-            triggerEvent(eventTarget, eventType, eventDetail);
+            triggerAnnotationModified(annotation, element);
             return cachedStats;
         };
         this._isInsideVolume = (index1, index2, dimensions) => {

package/dist/esm/tools/annotation/RectangleROITool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/esm/tools/annotation/SplineContourSegmentationTool.js ADDED Viewed

@@ -0,0 +1,18 @@
+import { utilities } from '@cornerstonejs/core';
+import SplineROITool from './SplineROITool';
+class SplineContourSegmentationTool extends SplineROITool {
+    constructor(toolProps) {
+        const initialProps = utilities.deepMerge({
+            configuration: {
+                calculateStats: false,
+            },
+        }, toolProps);
+        super(initialProps);
+    }
+    isContourSegmentationTool() {
+        return true;
+    }
+}
+SplineContourSegmentationTool.toolName = 'SplineContourSegmentationTool';
+export default SplineContourSegmentationTool;
+//# sourceMappingURL=SplineContourSegmentationTool.js.map

package/dist/esm/tools/annotation/SplineContourSegmentationTool.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"SplineContourSegmentationTool.js","sourceRoot":"","sources":["../../../../src/tools/annotation/SplineContourSegmentationTool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAEhD,OAAO,aAAa,MAAM,iBAAiB,CAAC;AAE5C,MAAM,6BAA8B,SAAQ,aAAa;IAGvD,YAAY,SAA0B;QACpC,MAAM,YAAY,GAAG,SAAS,CAAC,SAAS,CACtC;YACE,aAAa,EAAE;gBACb,cAAc,EAAE,KAAK;aACtB;SACF,EACD,SAAS,CACV,CAAC;QAEF,KAAK,CAAC,YAAY,CAAC,CAAC;IACtB,CAAC;IAES,yBAAyB;QAEjC,OAAO,IAAI,CAAC;IACd,CAAC;CACF;AAED,6BAA6B,CAAC,QAAQ,GAAG,+BAA+B,CAAC;AACzE,eAAe,6BAA6B,CAAC"}