@cornerstonejs/tools 1.52.0 → 1.54.0

package/dist/cjs/utilities/contours/mergePoints.js

@@ -1,77 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.removeDuplicatePoints = void 0;
-function ptInArray(array, pt) {
-    let index = -1;
-    for (let i = 0; i < array.length; i++) {
-        if (isSamePoint(pt, array[i])) {
-            index = i;
-        }
-    }
-    return index;
-}
-function isSamePoint(ptA, ptB) {
-    if (ptA[0] == ptB[0] && ptA[1] == ptB[1] && ptA[2] == ptB[2]) {
-        return true;
-    }
-    else {
-        return false;
-    }
-}
-function replacePointIndexReferences(linesArray, oldIndex, newIndex) {
-    for (let i = 0; i < linesArray.length; i++) {
-        const line = linesArray[i];
-        if (line.a == oldIndex) {
-            line.a = newIndex;
-        }
-        else if (line.b == oldIndex) {
-            line.b = newIndex;
-        }
-    }
-}
-function removeDuplicatePoints(polyData, bypass = false) {
-    const points = polyData.getPoints();
-    const lines = polyData.getLines();
-    const pointsArray = [];
-    for (let i = 0; i < points.getNumberOfPoints(); i++) {
-        const pt = points.getPoint(i).slice();
-        pointsArray.push(pt);
-    }
-    const linesArray = [];
-    for (let i = 0; i < lines.getNumberOfCells(); i++) {
-        const cell = lines.getCell(i * 3).slice();
-        const a = cell[0];
-        const b = cell[1];
-        const line = {
-            a,
-            b,
-        };
-        linesArray.push(line);
-    }
-    if (bypass) {
-        return { points: pointsArray, lines: linesArray };
-    }
-    const newPoints = [];
-    for (let i = 0; i < pointsArray.length; i++) {
-        const pt = pointsArray[i];
-        let index = ptInArray(newPoints, pt);
-        if (index >= 0) {
-            replacePointIndexReferences(linesArray, i, index);
-        }
-        else {
-            index = newPoints.length;
-            newPoints.push(pt);
-            replacePointIndexReferences(linesArray, i, index);
-        }
-    }
-    const newLines = [];
-    linesArray.forEach((line) => {
-        if (line.a != line.b) {
-            newLines.push(line);
-        }
-    });
-    return { points: newPoints, lines: newLines };
-}
-exports.removeDuplicatePoints = removeDuplicatePoints;
-exports.default = { removeDuplicatePoints };
-//# sourceMappingURL=mergePoints.js.map

package/dist/cjs/utilities/contours/mergePoints.js.map

@@ -1 +0,0 @@
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package/dist/esm/tools/displayTools/Contour/addContourSetsToElement.js.map

@@ -1 +0,0 @@
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package/dist/esm/tools/displayTools/Contour/addOrUpdateContourSets.js.map

@@ -1 +0,0 @@
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package/dist/esm/tools/displayTools/Contour/contourConfigCache.js.map

@@ -1 +0,0 @@
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package/dist/esm/tools/displayTools/Contour/updateContourSets.js.map

@@ -1 +0,0 @@
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package/dist/esm/tools/displayTools/Contour/utils.js.map

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package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js

@@ -1,18 +0,0 @@
-import { cache } from '@cornerstonejs/core';
-function validate(segmentationInput) {
-    if (!segmentationInput.representation.data) {
-        throw new Error('The segmentationInput.representationData.data is undefined, please provide a valid representationData.data');
-    }
-    const representationData = segmentationInput.representation
-        .data;
-    if ('volumeId' in representationData) {
-        const cachedVolume = cache.getVolume(representationData.volumeId);
-        if (!cachedVolume) {
-            throw new Error(`volumeId of ${representationData.volumeId} not found in cache, you should load and cache volume before adding segmentation`);
-        }
-    }
-    else {
-    }
-}
-export default validate;
-//# sourceMappingURL=validateRepresentationData.js.map

package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js.map

@@ -1 +0,0 @@
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package/dist/esm/tools/displayTools/Surface/addSurfaceToElement.js

@@ -1,79 +0,0 @@
-import { getEnabledElement, Enums, VolumeViewport3D, } from '@cornerstonejs/core';
-import vtkMapper from '@kitware/vtk.js/Rendering/Core/Mapper';
-import vtkActor from '@kitware/vtk.js/Rendering/Core/Actor';
-import vtkClipClosedSurface from '@kitware/vtk.js/Filters/General/ClipClosedSurface';
-import vtkPolyData from '@kitware/vtk.js/Common/DataModel/PolyData';
-import vtkCellArray from '@kitware/vtk.js/Common/Core/CellArray';
-import { pointToString } from '../../../utilities/pointToString';
-const polyDataCache = new Map();
-function addSurfaceToElement(element, surface, actorUID) {
-    const enabledElement = getEnabledElement(element);
-    const { viewport } = enabledElement;
-    const points = surface.getPoints();
-    const polys = surface.getPolys();
-    const color = surface.getColor();
-    const polyData = vtkPolyData.newInstance();
-    polyData.getPoints().setData(points, 3);
-    const triangles = vtkCellArray.newInstance({
-        values: Float32Array.from(polys),
-    });
-    polyData.setPolys(triangles);
-    const mapper = vtkMapper.newInstance({});
-    let clippingFilter;
-    if (!(viewport instanceof VolumeViewport3D)) {
-        clippingFilter = vtkClipClosedSurface.newInstance({
-            clippingPlanes: [],
-            activePlaneId: 2,
-            passPointData: false,
-        });
-        clippingFilter.setInputData(polyData);
-        clippingFilter.setGenerateOutline(true);
-        clippingFilter.setGenerateFaces(false);
-        clippingFilter.update();
-        const filteredData = clippingFilter.getOutputData();
-        mapper.setInputData(filteredData);
-    }
-    else {
-        mapper.setInputData(polyData);
-    }
-    const actor = vtkActor.newInstance();
-    actor.setMapper(mapper);
-    actor.getProperty().setColor(color[0] / 255, color[1] / 255, color[2] / 255);
-    viewport.addActor({
-        actor,
-        uid: actorUID,
-        clippingFilter,
-    });
-    element.addEventListener(Enums.Events.CLIPPING_PLANES_UPDATED, updateSurfacePlanes);
-}
-function updateSurfacePlanes(evt) {
-    const { actorEntry, vtkPlanes, viewport } = evt.detail;
-    if (!actorEntry?.clippingFilter) {
-        return;
-    }
-    const mapper = actorEntry.actor.getMapper();
-    const { viewPlaneNormal } = viewport.getCamera();
-    const imageIndex = viewport.getCurrentImageIdIndex();
-    const cacheId = `${viewport.id}-${pointToString(viewPlaneNormal)}-${imageIndex}`;
-    let actorCache = polyDataCache.get(actorEntry.uid);
-    if (!actorCache) {
-        actorCache = new Map();
-        polyDataCache.set(actorEntry.uid, actorCache);
-    }
-    let polyData = actorCache.get(cacheId);
-    if (!polyData) {
-        const clippingFilter = actorEntry.clippingFilter;
-        clippingFilter.setClippingPlanes(vtkPlanes);
-        try {
-            clippingFilter.update();
-            polyData = clippingFilter.getOutputData();
-            actorCache.set(cacheId, polyData);
-        }
-        catch (e) {
-            console.error('Error clipping surface', e);
-        }
-    }
-    mapper.setInputData(polyData);
-}
-export default addSurfaceToElement;
-//# sourceMappingURL=addSurfaceToElement.js.map

package/dist/esm/tools/displayTools/Surface/addSurfaceToElement.js.map

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package/dist/esm/utilities/contours/mergePoints.js

@@ -1,73 +0,0 @@
-function ptInArray(array, pt) {
-    let index = -1;
-    for (let i = 0; i < array.length; i++) {
-        if (isSamePoint(pt, array[i])) {
-            index = i;
-        }
-    }
-    return index;
-}
-function isSamePoint(ptA, ptB) {
-    if (ptA[0] == ptB[0] && ptA[1] == ptB[1] && ptA[2] == ptB[2]) {
-        return true;
-    }
-    else {
-        return false;
-    }
-}
-function replacePointIndexReferences(linesArray, oldIndex, newIndex) {
-    for (let i = 0; i < linesArray.length; i++) {
-        const line = linesArray[i];
-        if (line.a == oldIndex) {
-            line.a = newIndex;
-        }
-        else if (line.b == oldIndex) {
-            line.b = newIndex;
-        }
-    }
-}
-export function removeDuplicatePoints(polyData, bypass = false) {
-    const points = polyData.getPoints();
-    const lines = polyData.getLines();
-    const pointsArray = [];
-    for (let i = 0; i < points.getNumberOfPoints(); i++) {
-        const pt = points.getPoint(i).slice();
-        pointsArray.push(pt);
-    }
-    const linesArray = [];
-    for (let i = 0; i < lines.getNumberOfCells(); i++) {
-        const cell = lines.getCell(i * 3).slice();
-        const a = cell[0];
-        const b = cell[1];
-        const line = {
-            a,
-            b,
-        };
-        linesArray.push(line);
-    }
-    if (bypass) {
-        return { points: pointsArray, lines: linesArray };
-    }
-    const newPoints = [];
-    for (let i = 0; i < pointsArray.length; i++) {
-        const pt = pointsArray[i];
-        let index = ptInArray(newPoints, pt);
-        if (index >= 0) {
-            replacePointIndexReferences(linesArray, i, index);
-        }
-        else {
-            index = newPoints.length;
-            newPoints.push(pt);
-            replacePointIndexReferences(linesArray, i, index);
-        }
-    }
-    const newLines = [];
-    linesArray.forEach((line) => {
-        if (line.a != line.b) {
-            newLines.push(line);
-        }
-    });
-    return { points: newPoints, lines: newLines };
-}
-export default { removeDuplicatePoints };
-//# sourceMappingURL=mergePoints.js.map

package/dist/esm/utilities/contours/mergePoints.js.map

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package/dist/types/tools/displayTools/Contour/addContourSetsToElement.d.ts.map

@@ -1 +0,0 @@
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package/dist/types/tools/displayTools/Contour/addOrUpdateContourSets.d.ts

@@ -1,4 +0,0 @@
-import { Types } from '@cornerstonejs/core';
-import { SegmentationRepresentationConfig, ToolGroupSpecificContourRepresentation } from '../../../types';
-export declare function addOrUpdateContourSets(viewport: Types.IVolumeViewport, geometryIds: string[], contourRepresentation: ToolGroupSpecificContourRepresentation, contourRepresentationConfig: SegmentationRepresentationConfig): void;
-//# sourceMappingURL=addOrUpdateContourSets.d.ts.map

package/dist/types/tools/displayTools/Contour/addOrUpdateContourSets.d.ts.map

@@ -1 +0,0 @@
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package/dist/types/tools/displayTools/Contour/contourConfigCache.d.ts.map

@@ -1 +0,0 @@
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package/dist/types/tools/displayTools/Contour/updateContourSets.d.ts

@@ -1,4 +0,0 @@
-import { Types } from '@cornerstonejs/core';
-import { SegmentationRepresentationConfig, ToolGroupSpecificContourRepresentation } from '../../../types';
-export declare function updateContourSets(viewport: Types.IVolumeViewport, geometryIds: string[], contourRepresentation: ToolGroupSpecificContourRepresentation, contourRepresentationConfig: SegmentationRepresentationConfig, contourActorUID: string): void;
-//# sourceMappingURL=updateContourSets.d.ts.map

package/dist/types/tools/displayTools/Contour/updateContourSets.d.ts.map

@@ -1 +0,0 @@
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package/dist/types/tools/displayTools/Contour/utils.d.ts.map

@@ -1 +0,0 @@
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package/dist/types/tools/displayTools/Labelmap/validateRepresentationData.d.ts

@@ -1,4 +0,0 @@
-import { SegmentationPublicInput } from '../../../types/SegmentationStateTypes';
-declare function validate(segmentationInput: SegmentationPublicInput): void;
-export default validate;
-//# sourceMappingURL=validateRepresentationData.d.ts.map

package/dist/types/tools/displayTools/Labelmap/validateRepresentationData.d.ts.map

@@ -1 +0,0 @@
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package/dist/types/tools/displayTools/Surface/addSurfaceToElement.d.ts

@@ -1,3 +0,0 @@
-declare function addSurfaceToElement(element: HTMLDivElement, surface: any, actorUID: string): void;
-export default addSurfaceToElement;
-//# sourceMappingURL=addSurfaceToElement.d.ts.map

package/dist/types/tools/displayTools/Surface/addSurfaceToElement.d.ts.map

@@ -1 +0,0 @@
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package/dist/types/utilities/contours/mergePoints.d.ts

@@ -1,9 +0,0 @@
-export declare function removeDuplicatePoints(polyData: any, bypass?: boolean): {
-    points: any[];
-    lines: any[];
-};
-declare const _default: {
-    removeDuplicatePoints: typeof removeDuplicatePoints;
-};
-export default _default;
-//# sourceMappingURL=mergePoints.d.ts.map

package/dist/types/utilities/contours/mergePoints.d.ts.map

@@ -1 +0,0 @@
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package/src/tools/displayTools/Labelmap/validateRepresentationData.ts

@@ -1,36 +0,0 @@
-import { SegmentationPublicInput } from '../../../types/SegmentationStateTypes';
-import { cache } from '@cornerstonejs/core';
-import type {
-  LabelmapSegmentationData,
-  LabelmapSegmentationDataVolume,
-} from '../../../types/LabelmapTypes';
-
-function validate(segmentationInput: SegmentationPublicInput): void {
-  if (!segmentationInput.representation.data) {
-    throw new Error(
-      'The segmentationInput.representationData.data is undefined, please provide a valid representationData.data'
-    );
-  }
-
-  const representationData = segmentationInput.representation
-    .data as LabelmapSegmentationData;
-
-  if ('volumeId' in representationData) {
-    // volumetric labelmap
-    const cachedVolume = cache.getVolume(
-      (representationData as LabelmapSegmentationDataVolume).volumeId
-    );
-
-    if (!cachedVolume) {
-      throw new Error(
-        `volumeId of ${
-          (representationData as LabelmapSegmentationDataVolume).volumeId
-        } not found in cache, you should load and cache volume before adding segmentation`
-      );
-    }
-  } else {
-    // I don't think we need this check since there is no guarantee that the stack is cached.
-  }
-}
-
-export default validate;

package/src/tools/displayTools/Surface/addSurfaceToElement.ts

@@ -1,115 +0,0 @@
-import {
-  getEnabledElement,
-  Enums,
-  VolumeViewport3D,
-} from '@cornerstonejs/core';
-import vtkMapper from '@kitware/vtk.js/Rendering/Core/Mapper';
-import vtkActor from '@kitware/vtk.js/Rendering/Core/Actor';
-import vtkClipClosedSurface from '@kitware/vtk.js/Filters/General/ClipClosedSurface';
-import vtkPolyData from '@kitware/vtk.js/Common/DataModel/PolyData';
-import vtkCellArray from '@kitware/vtk.js/Common/Core/CellArray';
-import { pointToString } from '../../../utilities/pointToString';
-
-const polyDataCache = new Map();
-
-function addSurfaceToElement(
-  element: HTMLDivElement,
-  surface: any,
-  actorUID: string
-): void {
-  const enabledElement = getEnabledElement(element);
-  const { viewport } = enabledElement;
-
-  // Default to true since we are setting a new segmentation, however,
-  // in the event listener, we will make other segmentations visible/invisible
-  // based on the config
-  const points = surface.getPoints();
-  const polys = surface.getPolys();
-  const color = surface.getColor();
-
-  const polyData = vtkPolyData.newInstance();
-  polyData.getPoints().setData(points, 3);
-
-  const triangles = vtkCellArray.newInstance({
-    values: Float32Array.from(polys),
-  });
-  polyData.setPolys(triangles);
-
-  const mapper = vtkMapper.newInstance({});
-  let clippingFilter;
-  if (!(viewport instanceof VolumeViewport3D)) {
-    clippingFilter = vtkClipClosedSurface.newInstance({
-      clippingPlanes: [],
-      activePlaneId: 2,
-      passPointData: false,
-    });
-    clippingFilter.setInputData(polyData);
-    clippingFilter.setGenerateOutline(true);
-    clippingFilter.setGenerateFaces(false);
-    clippingFilter.update();
-    const filteredData = clippingFilter.getOutputData();
-    mapper.setInputData(filteredData);
-  } else {
-    mapper.setInputData(polyData);
-  }
-
-  const actor = vtkActor.newInstance();
-  actor.setMapper(mapper);
-
-  // sets the color of the surface actor
-  actor.getProperty().setColor(color[0] / 255, color[1] / 255, color[2] / 255);
-  viewport.addActor({
-    actor,
-    uid: actorUID,
-    clippingFilter,
-  });
-
-  element.addEventListener(
-    Enums.Events.CLIPPING_PLANES_UPDATED,
-    updateSurfacePlanes
-  );
-}
-
-/**
- * Updates the clipping planes of a surface and caches the resulting poly data
- * @param evt
- */
-function updateSurfacePlanes(evt) {
-  const { actorEntry, vtkPlanes, viewport } = evt.detail;
-  if (!actorEntry?.clippingFilter) {
-    return;
-  }
-
-  const mapper = actorEntry.actor.getMapper();
-
-  const { viewPlaneNormal } = viewport.getCamera();
-  const imageIndex = viewport.getCurrentImageIdIndex();
-
-  // we should not use the focalPoint here, since the pan and zoom updates it,
-  // imageIndex is reliable enough
-  const cacheId = `${viewport.id}-${pointToString(
-    viewPlaneNormal
-  )}-${imageIndex}`;
-
-  let actorCache = polyDataCache.get(actorEntry.uid);
-  if (!actorCache) {
-    actorCache = new Map();
-    polyDataCache.set(actorEntry.uid, actorCache);
-  }
-
-  let polyData = actorCache.get(cacheId);
-  if (!polyData) {
-    const clippingFilter = actorEntry.clippingFilter;
-    clippingFilter.setClippingPlanes(vtkPlanes);
-    try {
-      clippingFilter.update();
-      polyData = clippingFilter.getOutputData();
-      actorCache.set(cacheId, polyData);
-    } catch (e) {
-      console.error('Error clipping surface', e);
-    }
-  }
-  mapper.setInputData(polyData);
-}
-
-export default addSurfaceToElement;

package/src/utilities/contours/mergePoints.ts

@@ -1,108 +0,0 @@
-/**
- * Checks if point is within array
- * @param {*} array
- * @param {*} pt
- * @returns
- */
-function ptInArray(array, pt) {
-  let index = -1;
-  for (let i = 0; i < array.length; i++) {
-    if (isSamePoint(pt, array[i])) {
-      index = i;
-    }
-  }
-  return index;
-}
-
-/**
- * Checks if point A and point B contain same values
- * @param {*} ptA
- * @param {*} ptB
- * @returns
- */
-function isSamePoint(ptA, ptB) {
-  if (ptA[0] == ptB[0] && ptA[1] == ptB[1] && ptA[2] == ptB[2]) {
-    return true;
-  } else {
-    return false;
-  }
-}
-
-/**
- * Goes through linesArray and replaces all references of old index with new index
- * @param {*} linesArray
- * @param {*} oldIndex
- * @param {*} newIndex
- */
-function replacePointIndexReferences(linesArray, oldIndex, newIndex) {
-  for (let i = 0; i < linesArray.length; i++) {
-    const line = linesArray[i];
-    if (line.a == oldIndex) {
-      line.a = newIndex;
-    } else if (line.b == oldIndex) {
-      line.b = newIndex;
-    }
-  }
-}
-
-/**
- * Iterate through polyData from vtkjs and merge any points that are the same
- * then update merged point references within lines array
- * @param {*} polyData
- * @param {*} bypass
- * @returns
- */
-export function removeDuplicatePoints(polyData, bypass = false) {
-  const points = polyData.getPoints();
-  const lines = polyData.getLines();
-
-  const pointsArray = [];
-  for (let i = 0; i < points.getNumberOfPoints(); i++) {
-    const pt = points.getPoint(i).slice();
-    pointsArray.push(pt);
-  }
-  const linesArray = [];
-  for (let i = 0; i < lines.getNumberOfCells(); i++) {
-    const cell = lines.getCell(i * 3).slice();
-    //console.log(JSON.stringify(cell));
-    const a = cell[0];
-    const b = cell[1];
-    const line = {
-      a,
-      b,
-    };
-    linesArray.push(line);
-  }
-
-  if (bypass) {
-    return { points: pointsArray, lines: linesArray };
-  }
-
-  // Iterate through points and replace any duplicates
-  const newPoints = [];
-  for (let i = 0; i < pointsArray.length; i++) {
-    const pt = pointsArray[i];
-    let index = ptInArray(newPoints, pt);
-
-    if (index >= 0) {
-      // Duplicate Point -> replace references in lines
-      replacePointIndexReferences(linesArray, i, index);
-    } else {
-      index = newPoints.length;
-      newPoints.push(pt);
-      replacePointIndexReferences(linesArray, i, index);
-    }
-  }
-
-  // Final pass through lines, remove any that refer to exact same point
-  const newLines = [];
-  linesArray.forEach((line) => {
-    if (line.a != line.b) {
-      newLines.push(line);
-    }
-  });
-
-  return { points: newPoints, lines: newLines };
-}
-
-export default { removeDuplicatePoints };