@cornerstonejs/tools 1.52.0 → 1.54.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cjs/drawingSvg/drawPath.d.ts +11 -0
- package/dist/cjs/drawingSvg/drawPath.js +55 -0
- package/dist/cjs/drawingSvg/drawPath.js.map +1 -0
- package/dist/cjs/drawingSvg/drawPolyline.d.ts +1 -1
- package/dist/cjs/drawingSvg/drawPolyline.js +2 -10
- package/dist/cjs/drawingSvg/drawPolyline.js.map +1 -1
- package/dist/cjs/drawingSvg/index.d.ts +2 -1
- package/dist/cjs/drawingSvg/index.js +3 -1
- package/dist/cjs/drawingSvg/index.js.map +1 -1
- package/dist/cjs/enums/WorkerTypes.d.ts +8 -0
- package/dist/cjs/enums/WorkerTypes.js +12 -0
- package/dist/cjs/enums/WorkerTypes.js.map +1 -0
- package/dist/cjs/enums/index.d.ts +2 -1
- package/dist/cjs/enums/index.js +3 -1
- package/dist/cjs/enums/index.js.map +1 -1
- package/dist/cjs/eventDispatchers/shared/getActiveToolForMouseEvent.js.map +1 -1
- package/dist/cjs/eventListeners/annotations/contourSegmentation/contourSegmentationCompleted.d.ts +1 -1
- package/dist/cjs/eventListeners/annotations/contourSegmentation/contourSegmentationCompleted.js +171 -89
- package/dist/cjs/eventListeners/annotations/contourSegmentation/contourSegmentationCompleted.js.map +1 -1
- package/dist/cjs/eventListeners/segmentation/imageChangeEventListener.js +4 -3
- package/dist/cjs/eventListeners/segmentation/imageChangeEventListener.js.map +1 -1
- package/dist/cjs/eventListeners/segmentation/labelmap/onLabelmapSegmentationDataModified.js +58 -47
- package/dist/cjs/eventListeners/segmentation/labelmap/onLabelmapSegmentationDataModified.js.map +1 -1
- package/dist/cjs/stateManagement/annotation/FrameOfReferenceSpecificAnnotationManager.d.ts +1 -0
- package/dist/cjs/stateManagement/annotation/FrameOfReferenceSpecificAnnotationManager.js +5 -0
- package/dist/cjs/stateManagement/annotation/FrameOfReferenceSpecificAnnotationManager.js.map +1 -1
- package/dist/cjs/stateManagement/annotation/annotationState.d.ts +7 -1
- package/dist/cjs/stateManagement/annotation/annotationState.js +54 -1
- package/dist/cjs/stateManagement/annotation/annotationState.js.map +1 -1
- package/dist/cjs/stateManagement/annotation/helpers/state.d.ts +2 -1
- package/dist/cjs/stateManagement/annotation/helpers/state.js +14 -3
- package/dist/cjs/stateManagement/annotation/helpers/state.js.map +1 -1
- package/dist/cjs/stateManagement/index.d.ts +6 -1
- package/dist/cjs/stateManagement/index.js +6 -1
- package/dist/cjs/stateManagement/index.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/SegmentationStateManager.js +4 -1
- package/dist/cjs/stateManagement/segmentation/SegmentationStateManager.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/addRepresentationData.d.ts +12 -0
- package/dist/cjs/stateManagement/segmentation/addRepresentationData.js +35 -0
- package/dist/cjs/stateManagement/segmentation/addRepresentationData.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/addSegmentationRepresentation.js +32 -14
- package/dist/cjs/stateManagement/segmentation/addSegmentationRepresentation.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/config/segmentationVisibility.js +3 -52
- package/dist/cjs/stateManagement/segmentation/config/segmentationVisibility.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/convertStackToVolumeSegmentation.d.ts +9 -2
- package/dist/cjs/stateManagement/segmentation/convertStackToVolumeSegmentation.js +44 -27
- package/dist/cjs/stateManagement/segmentation/convertStackToVolumeSegmentation.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/convertVolumeToStackSegmentation.d.ts +13 -0
- package/dist/cjs/stateManagement/segmentation/convertVolumeToStackSegmentation.js +52 -26
- package/dist/cjs/stateManagement/segmentation/convertVolumeToStackSegmentation.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/helpers/validateSegmentationInput.js +6 -9
- package/dist/cjs/stateManagement/segmentation/helpers/validateSegmentationInput.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/index.d.ts +3 -1
- package/dist/cjs/stateManagement/segmentation/index.js +5 -1
- package/dist/cjs/stateManagement/segmentation/index.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/polySeg/Contour/computeAndAddContourRepresentation.d.ts +2 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Contour/computeAndAddContourRepresentation.js +8 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Contour/computeAndAddContourRepresentation.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.d.ts +2 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js +11 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.d.ts +7 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.js +162 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.d.ts +6 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js +71 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.d.ts +6 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.js +120 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/computeAndAddSurfaceRepresentation.d.ts +4 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/computeAndAddSurfaceRepresentation.js +12 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/computeAndAddSurfaceRepresentation.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/convertContourToSurface.d.ts +3 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/convertContourToSurface.js +52 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/convertContourToSurface.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/convertLabelmapToSurface.d.ts +3 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/convertLabelmapToSurface.js +60 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/convertLabelmapToSurface.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/createAndCacheSurfacesFromRaw.d.ts +5 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/createAndCacheSurfacesFromRaw.js +56 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/createAndCacheSurfacesFromRaw.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/surfaceComputationStrategies.d.ts +12 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/surfaceComputationStrategies.js +94 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/surfaceComputationStrategies.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/updateSurfaceData.d.ts +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/updateSurfaceData.js +74 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/Surface/updateSurfaceData.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/canComputeRequestedRepresentation.d.ts +2 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/canComputeRequestedRepresentation.js +83 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/canComputeRequestedRepresentation.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/computeAndAddRepresentation.d.ts +3 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/computeAndAddRepresentation.js +64 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/computeAndAddRepresentation.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/index.d.ts +5 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/index.js +12 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/index.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/registerPolySegWorker.d.ts +1 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/registerPolySegWorker.js +27 -0
- package/dist/cjs/stateManagement/segmentation/polySeg/registerPolySegWorker.js.map +1 -0
- package/dist/cjs/stateManagement/segmentation/segmentIndex.js +4 -0
- package/dist/cjs/stateManagement/segmentation/segmentIndex.js.map +1 -1
- package/dist/cjs/stateManagement/segmentation/segmentationState.d.ts +6 -1
- package/dist/cjs/stateManagement/segmentation/segmentationState.js +30 -1
- package/dist/cjs/stateManagement/segmentation/segmentationState.js.map +1 -1
- package/dist/cjs/store/ToolGroupManager/ToolGroup.d.ts +3 -1
- package/dist/cjs/store/ToolGroupManager/ToolGroup.js +3 -2
- package/dist/cjs/store/ToolGroupManager/ToolGroup.js.map +1 -1
- package/dist/cjs/tools/ScaleOverlayTool.js +2 -1
- package/dist/cjs/tools/ScaleOverlayTool.js.map +1 -1
- package/dist/cjs/tools/SegmentationIntersectionTool.js +1 -1
- package/dist/cjs/tools/SegmentationIntersectionTool.js.map +1 -1
- package/dist/cjs/tools/annotation/LivewireContourSegmentationTool.js +1 -1
- package/dist/cjs/tools/annotation/LivewireContourSegmentationTool.js.map +1 -1
- package/dist/cjs/tools/annotation/LivewireContourTool.d.ts +4 -3
- package/dist/cjs/tools/annotation/LivewireContourTool.js +26 -26
- package/dist/cjs/tools/annotation/LivewireContourTool.js.map +1 -1
- package/dist/cjs/tools/annotation/PlanarFreehandContourSegmentationTool.d.ts +1 -2
- package/dist/cjs/tools/annotation/PlanarFreehandContourSegmentationTool.js +0 -11
- package/dist/cjs/tools/annotation/PlanarFreehandContourSegmentationTool.js.map +1 -1
- package/dist/cjs/tools/annotation/PlanarFreehandROITool.js +2 -2
- package/dist/cjs/tools/annotation/PlanarFreehandROITool.js.map +1 -1
- package/dist/cjs/tools/annotation/ProbeTool.js +3 -0
- package/dist/cjs/tools/annotation/ProbeTool.js.map +1 -1
- package/dist/cjs/tools/annotation/SplineROITool.d.ts +6 -3
- package/dist/cjs/tools/annotation/SplineROITool.js +37 -18
- package/dist/cjs/tools/annotation/SplineROITool.js.map +1 -1
- package/dist/cjs/tools/annotation/planarFreehandROITool/closedContourEditLoop.js +12 -7
- package/dist/cjs/tools/annotation/planarFreehandROITool/closedContourEditLoop.js.map +1 -1
- package/dist/cjs/tools/annotation/planarFreehandROITool/drawLoop.js +25 -19
- package/dist/cjs/tools/annotation/planarFreehandROITool/drawLoop.js.map +1 -1
- package/dist/cjs/tools/annotation/planarFreehandROITool/openContourEditLoop.js +16 -10
- package/dist/cjs/tools/annotation/planarFreehandROITool/openContourEditLoop.js.map +1 -1
- package/dist/cjs/tools/annotation/planarFreehandROITool/openContourEndEditLoop.js +1 -1
- package/dist/cjs/tools/annotation/planarFreehandROITool/openContourEndEditLoop.js.map +1 -1
- package/dist/cjs/tools/annotation/planarFreehandROITool/renderMethods.js +19 -7
- package/dist/cjs/tools/annotation/planarFreehandROITool/renderMethods.js.map +1 -1
- package/dist/cjs/tools/annotation/splines/LinearSpline.js +1 -1
- package/dist/cjs/tools/annotation/splines/LinearSpline.js.map +1 -1
- package/dist/cjs/tools/annotation/splines/Spline.d.ts +2 -0
- package/dist/cjs/tools/annotation/splines/Spline.js +7 -3
- package/dist/cjs/tools/annotation/splines/Spline.js.map +1 -1
- package/dist/cjs/tools/base/AnnotationTool.js +1 -1
- package/dist/cjs/tools/base/AnnotationTool.js.map +1 -1
- package/dist/cjs/tools/base/BaseTool.js.map +1 -1
- package/dist/cjs/tools/base/ContourBaseTool.d.ts +1 -0
- package/dist/cjs/tools/base/ContourBaseTool.js +18 -1
- package/dist/cjs/tools/base/ContourBaseTool.js.map +1 -1
- package/dist/cjs/tools/base/ContourSegmentationBaseTool.d.ts +1 -2
- package/dist/cjs/tools/base/ContourSegmentationBaseTool.js +28 -24
- package/dist/cjs/tools/base/ContourSegmentationBaseTool.js.map +1 -1
- package/dist/cjs/tools/displayTools/Contour/contourConfig.js +1 -0
- package/dist/cjs/tools/displayTools/Contour/contourConfig.js.map +1 -1
- package/dist/cjs/tools/displayTools/Contour/contourDisplay.js +9 -6
- package/dist/cjs/tools/displayTools/Contour/contourDisplay.js.map +1 -1
- package/dist/cjs/tools/displayTools/Contour/removeContourFromElement.js.map +1 -1
- package/dist/cjs/tools/displayTools/Contour/{addContourSetsToElement.d.ts → vtkContour/addContourSetsToElement.d.ts} +1 -1
- package/dist/cjs/tools/displayTools/Contour/vtkContour/addContourSetsToElement.js.map +1 -0
- package/dist/cjs/tools/displayTools/Contour/vtkContour/addOrUpdateVTKContourSets.d.ts +3 -0
- package/dist/cjs/tools/displayTools/Contour/vtkContour/addOrUpdateVTKContourSets.js +14 -0
- package/dist/cjs/tools/displayTools/Contour/vtkContour/addOrUpdateVTKContourSets.js.map +1 -0
- package/dist/cjs/tools/displayTools/Contour/vtkContour/contourConfigCache.js.map +1 -0
- package/dist/cjs/tools/displayTools/Contour/vtkContour/updateVTKContourSets.d.ts +3 -0
- package/dist/cjs/tools/displayTools/Contour/{updateContourSets.js → vtkContour/updateVTKContourSets.js} +4 -4
- package/dist/cjs/tools/displayTools/Contour/vtkContour/updateVTKContourSets.js.map +1 -0
- package/dist/cjs/tools/displayTools/Contour/{utils.d.ts → vtkContour/utils.d.ts} +2 -2
- package/dist/cjs/tools/displayTools/Contour/vtkContour/utils.js.map +1 -0
- package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.js +1 -1
- package/dist/cjs/tools/displayTools/Labelmap/addLabelmapToElement.js.map +1 -1
- package/dist/cjs/tools/displayTools/Labelmap/index.d.ts +2 -1
- package/dist/cjs/tools/displayTools/Labelmap/index.js +4 -1
- package/dist/cjs/tools/displayTools/Labelmap/index.js.map +1 -1
- package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.js +20 -2
- package/dist/cjs/tools/displayTools/Labelmap/labelmapDisplay.js.map +1 -1
- package/dist/cjs/tools/displayTools/Labelmap/validateLabelmap.d.ts +4 -0
- package/dist/cjs/tools/displayTools/Labelmap/validateLabelmap.js +38 -0
- package/dist/cjs/tools/displayTools/Labelmap/validateLabelmap.js.map +1 -0
- package/dist/cjs/tools/displayTools/Surface/addOrUpdateSurfaceToElement.d.ts +3 -0
- package/dist/cjs/tools/displayTools/Surface/addOrUpdateSurfaceToElement.js +112 -0
- package/dist/cjs/tools/displayTools/Surface/addOrUpdateSurfaceToElement.js.map +1 -0
- package/dist/cjs/tools/displayTools/Surface/surfaceConfig.d.ts +3 -0
- package/dist/cjs/tools/displayTools/Surface/surfaceConfig.js +11 -0
- package/dist/cjs/tools/displayTools/Surface/surfaceConfig.js.map +1 -0
- package/dist/cjs/tools/displayTools/Surface/surfaceDisplay.d.ts +7 -0
- package/dist/cjs/tools/displayTools/Surface/surfaceDisplay.js +173 -27
- package/dist/cjs/tools/displayTools/Surface/surfaceDisplay.js.map +1 -1
- package/dist/cjs/tools/displayTools/registerDisplayToolsWorker.d.ts +1 -0
- package/dist/cjs/tools/displayTools/registerDisplayToolsWorker.js +27 -0
- package/dist/cjs/tools/displayTools/registerDisplayToolsWorker.js.map +1 -0
- package/dist/cjs/tools/segmentation/BrushTool.js +1 -1
- package/dist/cjs/tools/segmentation/BrushTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/CircleScissorsTool.js +1 -1
- package/dist/cjs/tools/segmentation/CircleScissorsTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/PaintFillTool.js +1 -1
- package/dist/cjs/tools/segmentation/PaintFillTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/RectangleScissorsTool.js +1 -1
- package/dist/cjs/tools/segmentation/RectangleScissorsTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/SegmentSelectTool.d.ts +6 -2
- package/dist/cjs/tools/segmentation/SegmentSelectTool.js +45 -35
- package/dist/cjs/tools/segmentation/SegmentSelectTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/SphereScissorsTool.js +1 -1
- package/dist/cjs/tools/segmentation/SphereScissorsTool.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/BrushStrategy.js +7 -5
- package/dist/cjs/tools/segmentation/strategies/BrushStrategy.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/compositions/regionFill.js +1 -1
- package/dist/cjs/tools/segmentation/strategies/compositions/regionFill.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/fillSphere.js +14 -5
- package/dist/cjs/tools/segmentation/strategies/fillSphere.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/utils/getStrategyData.js +21 -9
- package/dist/cjs/tools/segmentation/strategies/utils/getStrategyData.js.map +1 -1
- package/dist/cjs/tools/segmentation/strategies/utils/stackVolumeCheck.d.ts +5 -5
- package/dist/cjs/tools/segmentation/strategies/utils/stackVolumeCheck.js +15 -8
- package/dist/cjs/tools/segmentation/strategies/utils/stackVolumeCheck.js.map +1 -1
- package/dist/cjs/types/AnnotationTypes.d.ts +2 -0
- package/dist/cjs/types/ContourAnnotation.d.ts +6 -0
- package/dist/cjs/types/ContourAnnotation.js +7 -0
- package/dist/cjs/types/ContourAnnotation.js.map +1 -1
- package/dist/cjs/types/ContourSegmentationAnnotation.d.ts +0 -1
- package/dist/cjs/types/ContourTypes.d.ts +1 -0
- package/dist/cjs/types/EventTypes.d.ts +4 -1
- package/dist/cjs/types/ISpline.d.ts +1 -0
- package/dist/cjs/types/LabelmapTypes.d.ts +5 -1
- package/dist/cjs/types/PolySeg.d.ts +6 -0
- package/dist/cjs/types/PolySeg.js +3 -0
- package/dist/cjs/types/PolySeg.js.map +1 -0
- package/dist/cjs/types/SegmentationStateTypes.d.ts +12 -2
- package/dist/cjs/types/SplineProps.d.ts +1 -0
- package/dist/cjs/types/SurfaceTypes.d.ts +1 -1
- package/dist/cjs/types/index.d.ts +2 -1
- package/dist/cjs/utilities/boundingBox/getBoundingBoxAroundShape.js +6 -6
- package/dist/cjs/utilities/boundingBox/getBoundingBoxAroundShape.js.map +1 -1
- package/dist/cjs/utilities/contourSegmentation/addContourSegmentationAnnotation.d.ts +2 -0
- package/dist/cjs/utilities/contourSegmentation/addContourSegmentationAnnotation.js +20 -0
- package/dist/cjs/utilities/contourSegmentation/addContourSegmentationAnnotation.js.map +1 -0
- package/dist/cjs/utilities/contourSegmentation/areSameSegment.js +0 -2
- package/dist/cjs/utilities/contourSegmentation/areSameSegment.js.map +1 -1
- package/dist/cjs/utilities/contourSegmentation/index.d.ts +2 -0
- package/dist/cjs/utilities/contourSegmentation/index.js +5 -1
- package/dist/cjs/utilities/contourSegmentation/index.js.map +1 -1
- package/dist/cjs/utilities/contourSegmentation/removeContourSegmentationAnnotation.d.ts +2 -0
- package/dist/cjs/utilities/contourSegmentation/removeContourSegmentationAnnotation.js +19 -0
- package/dist/cjs/utilities/contourSegmentation/removeContourSegmentationAnnotation.js.map +1 -0
- package/dist/cjs/utilities/contours/detectContourHoles.js.map +1 -1
- package/dist/cjs/utilities/contours/generateContourSetsFromLabelmap.js +2 -2
- package/dist/cjs/utilities/contours/generateContourSetsFromLabelmap.js.map +1 -1
- package/dist/cjs/utilities/contours/getContourHolesDataCanvas.d.ts +3 -0
- package/dist/cjs/utilities/contours/getContourHolesDataCanvas.js +21 -0
- package/dist/cjs/utilities/contours/getContourHolesDataCanvas.js.map +1 -0
- package/dist/cjs/utilities/contours/getContourHolesDataWorld.d.ts +3 -0
- package/dist/cjs/utilities/contours/getContourHolesDataWorld.js +10 -0
- package/dist/cjs/utilities/contours/getContourHolesDataWorld.js.map +1 -0
- package/dist/cjs/utilities/contours/getDeduplicatedVTKPolyDataPoints.d.ts +11 -0
- package/dist/cjs/utilities/contours/getDeduplicatedVTKPolyDataPoints.js +50 -0
- package/dist/cjs/utilities/contours/getDeduplicatedVTKPolyDataPoints.js.map +1 -0
- package/dist/cjs/utilities/contours/index.d.ts +5 -2
- package/dist/cjs/utilities/contours/index.js +9 -3
- package/dist/cjs/utilities/contours/index.js.map +1 -1
- package/dist/cjs/utilities/contours/updateContourPolyline.d.ts +10 -0
- package/dist/cjs/utilities/contours/updateContourPolyline.js +64 -0
- package/dist/cjs/utilities/contours/updateContourPolyline.js.map +1 -0
- package/dist/cjs/utilities/index.d.ts +3 -1
- package/dist/cjs/utilities/index.js +5 -1
- package/dist/cjs/utilities/index.js.map +1 -1
- package/dist/cjs/utilities/math/polyline/containsPoint.js.map +1 -1
- package/dist/cjs/utilities/math/polyline/containsPoints.d.ts +2 -0
- package/dist/cjs/utilities/math/polyline/containsPoints.js +16 -0
- package/dist/cjs/utilities/math/polyline/containsPoints.js.map +1 -0
- package/dist/cjs/utilities/math/polyline/getWindingDirection.d.ts +2 -0
- package/dist/cjs/utilities/math/polyline/getWindingDirection.js +12 -0
- package/dist/cjs/utilities/math/polyline/getWindingDirection.js.map +1 -0
- package/dist/cjs/utilities/math/polyline/index.d.ts +4 -1
- package/dist/cjs/utilities/math/polyline/index.js +7 -1
- package/dist/cjs/utilities/math/polyline/index.js.map +1 -1
- package/dist/cjs/utilities/math/polyline/isPointInsidePolyline3D.d.ts +2 -0
- package/dist/cjs/utilities/math/polyline/isPointInsidePolyline3D.js +34 -0
- package/dist/cjs/utilities/math/polyline/isPointInsidePolyline3D.js.map +1 -0
- package/dist/cjs/utilities/math/polyline/planarFreehandROIInternalTypes.d.ts +1 -0
- package/dist/cjs/utilities/segmentation/contourAndFindLargestBidirectional.js +0 -1
- package/dist/cjs/utilities/segmentation/contourAndFindLargestBidirectional.js.map +1 -1
- package/dist/cjs/utilities/segmentation/getHoveredContourSegmentationAnnotation.d.ts +1 -0
- package/dist/cjs/utilities/segmentation/getHoveredContourSegmentationAnnotation.js +18 -0
- package/dist/cjs/utilities/segmentation/getHoveredContourSegmentationAnnotation.js.map +1 -0
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- package/dist/cjs/tools/displayTools/Surface/addSurfaceToElement.d.ts +0 -2
- package/dist/cjs/tools/displayTools/Surface/addSurfaceToElement.js +0 -84
- package/dist/cjs/tools/displayTools/Surface/addSurfaceToElement.js.map +0 -1
- package/dist/cjs/utilities/contours/mergePoints.d.ts +0 -8
- package/dist/cjs/utilities/contours/mergePoints.js +0 -77
- package/dist/cjs/utilities/contours/mergePoints.js.map +0 -1
- package/dist/esm/tools/displayTools/Contour/addContourSetsToElement.js.map +0 -1
- package/dist/esm/tools/displayTools/Contour/addOrUpdateContourSets.js.map +0 -1
- package/dist/esm/tools/displayTools/Contour/contourConfigCache.js.map +0 -1
- package/dist/esm/tools/displayTools/Contour/updateContourSets.js.map +0 -1
- package/dist/esm/tools/displayTools/Contour/utils.js.map +0 -1
- package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js +0 -18
- package/dist/esm/tools/displayTools/Labelmap/validateRepresentationData.js.map +0 -1
- package/dist/esm/tools/displayTools/Surface/addSurfaceToElement.js +0 -79
- package/dist/esm/tools/displayTools/Surface/addSurfaceToElement.js.map +0 -1
- package/dist/esm/utilities/contours/mergePoints.js +0 -73
- package/dist/esm/utilities/contours/mergePoints.js.map +0 -1
- package/dist/types/tools/displayTools/Contour/addContourSetsToElement.d.ts.map +0 -1
- package/dist/types/tools/displayTools/Contour/addOrUpdateContourSets.d.ts +0 -4
- package/dist/types/tools/displayTools/Contour/addOrUpdateContourSets.d.ts.map +0 -1
- package/dist/types/tools/displayTools/Contour/contourConfigCache.d.ts.map +0 -1
- package/dist/types/tools/displayTools/Contour/updateContourSets.d.ts +0 -4
- package/dist/types/tools/displayTools/Contour/updateContourSets.d.ts.map +0 -1
- package/dist/types/tools/displayTools/Contour/utils.d.ts.map +0 -1
- package/dist/types/tools/displayTools/Labelmap/validateRepresentationData.d.ts +0 -4
- package/dist/types/tools/displayTools/Labelmap/validateRepresentationData.d.ts.map +0 -1
- package/dist/types/tools/displayTools/Surface/addSurfaceToElement.d.ts +0 -3
- package/dist/types/tools/displayTools/Surface/addSurfaceToElement.d.ts.map +0 -1
- package/dist/types/utilities/contours/mergePoints.d.ts +0 -9
- package/dist/types/utilities/contours/mergePoints.d.ts.map +0 -1
- package/src/tools/displayTools/Labelmap/validateRepresentationData.ts +0 -36
- package/src/tools/displayTools/Surface/addSurfaceToElement.ts +0 -115
- package/src/utilities/contours/mergePoints.ts +0 -108
- /package/dist/cjs/tools/displayTools/Contour/{addContourSetsToElement.js → vtkContour/addContourSetsToElement.js} +0 -0
- /package/dist/cjs/tools/displayTools/Contour/{contourConfigCache.d.ts → vtkContour/contourConfigCache.d.ts} +0 -0
- /package/dist/cjs/tools/displayTools/Contour/{contourConfigCache.js → vtkContour/contourConfigCache.js} +0 -0
- /package/dist/cjs/tools/displayTools/Contour/{utils.js → vtkContour/utils.js} +0 -0
- /package/dist/esm/tools/displayTools/Contour/{addContourSetsToElement.js → vtkContour/addContourSetsToElement.js} +0 -0
- /package/dist/esm/tools/displayTools/Contour/{contourConfigCache.js → vtkContour/contourConfigCache.js} +0 -0
- /package/dist/esm/tools/displayTools/Contour/{utils.js → vtkContour/utils.js} +0 -0
- /package/dist/types/tools/displayTools/Contour/{contourConfigCache.d.ts → vtkContour/contourConfigCache.d.ts} +0 -0
- /package/src/tools/displayTools/Contour/{contourConfigCache.ts → vtkContour/contourConfigCache.ts} +0 -0
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import removeSegmentationsFromToolGroup from './removeSegmentationsFromToolGroup';
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import addSegmentations from './addSegmentations';
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import addSegmentationRepresentations from './addSegmentationRepresentations';
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import addRepresentationData from './addRepresentationData';
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import { convertStackToVolumeSegmentation } from './convertStackToVolumeSegmentation';
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import { convertVolumeToStackSegmentation } from './convertVolumeToStackSegmentation';
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import * as activeSegmentation from './activeSegmentation';
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@@ -9,5 +10,6 @@ import * as state from './segmentationState';
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import * as config from './config';
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import * as segmentIndex from './segmentIndex';
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import * as triggerSegmentationEvents from './triggerSegmentationEvents';
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-
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import * as polySegManager from './polySeg';
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export { addSegmentations, addSegmentationRepresentations, removeSegmentationsFromToolGroup, addRepresentationData, state, activeSegmentation, segmentLocking, config, segmentIndex, triggerSegmentationEvents, convertStackToVolumeSegmentation, convertVolumeToStackSegmentation, polySegManager as polySeg, };
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//# sourceMappingURL=index.js.map
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/stateManagement/segmentation/index.ts"],"names":[],"mappings":"AAAA,OAAO,gCAAgC,MAAM,oCAAoC,CAAC;AAClF,OAAO,gBAAgB,MAAM,oBAAoB,CAAC;AAClD,OAAO,8BAA8B,MAAM,kCAAkC,CAAC;AAC9E,OAAO,EAAE,gCAAgC,EAAE,MAAM,oCAAoC,CAAC;AACtF,OAAO,EAAE,gCAAgC,EAAE,MAAM,oCAAoC,CAAC;
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/stateManagement/segmentation/index.ts"],"names":[],"mappings":"AAAA,OAAO,gCAAgC,MAAM,oCAAoC,CAAC;AAClF,OAAO,gBAAgB,MAAM,oBAAoB,CAAC;AAClD,OAAO,8BAA8B,MAAM,kCAAkC,CAAC;AAC9E,OAAO,qBAAqB,MAAM,yBAAyB,CAAC;AAC5D,OAAO,EAAE,gCAAgC,EAAE,MAAM,oCAAoC,CAAC;AACtF,OAAO,EAAE,gCAAgC,EAAE,MAAM,oCAAoC,CAAC;AAGtF,OAAO,KAAK,kBAAkB,MAAM,sBAAsB,CAAC;AAC3D,OAAO,KAAK,cAAc,MAAM,kBAAkB,CAAC;AACnD,OAAO,KAAK,KAAK,MAAM,qBAAqB,CAAC;AAC7C,OAAO,KAAK,MAAM,MAAM,UAAU,CAAC;AACnC,OAAO,KAAK,YAAY,MAAM,gBAAgB,CAAC;AAC/C,OAAO,KAAK,yBAAyB,MAAM,6BAA6B,CAAC;AACzE,OAAO,KAAK,cAAc,MAAM,WAAW,CAAC;AAE5C,OAAO,EAEL,gBAAgB,EAChB,8BAA8B,EAC9B,gCAAgC,EAChC,qBAAqB,EAErB,KAAK,EACL,kBAAkB,EAClB,cAAc,EACd,MAAM,EACN,YAAY,EACZ,yBAAyB,EACzB,gCAAgC,EAChC,gCAAgC,EAChC,cAAc,IAAI,OAAO,GAC1B,CAAC"}
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{"version":3,"file":"computeAndAddContourRepresentation.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Contour/computeAndAddContourRepresentation.ts"],"names":[],"mappings":"AAWA,MAAM,UAAU,kCAAkC,CAChD,cAAsB,EACtB,UAAoC,EAAE;IAEtC,MAAM,IAAI,KAAK,CAAC,qBAAqB,CAAC,CAAC;AACzC,CAAC"}
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import { SegmentationRepresentations } from '../../../../enums';
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import { computeAndAddRepresentation } from '../computeAndAddRepresentation';
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import { computeLabelmapData } from './labelmapComputationStrategies';
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export function computeAndAddLabelmapRepresentation(segmentationId, options = {}) {
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return computeAndAddRepresentation(segmentationId, SegmentationRepresentations.Labelmap, () => computeLabelmapData(segmentationId, options), () => { });
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}
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//# sourceMappingURL=computeAndAddLabelmapRepresentation.js.map
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{"version":3,"file":"computeAndAddLabelmapRepresentation.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Labelmap/computeAndAddLabelmapRepresentation.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,2BAA2B,EAAE,MAAM,mBAAmB,CAAC;AAChE,OAAO,EAAE,2BAA2B,EAAE,MAAM,gCAAgC,CAAC;AAC7E,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AAYtE,MAAM,UAAU,mCAAmC,CACjD,cAAsB,EACtB,UAAoC,EAAE;IAEtC,OAAO,2BAA2B,CAChC,cAAc,EACd,2BAA2B,CAAC,QAAQ,EACpC,GAAG,EAAE,CAAC,mBAAmB,CAAC,cAAc,EAAE,OAAO,CAAC,EAClD,GAAG,EAAE,GAAE,CAAC,CACT,CAAC;AACJ,CAAC"}
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@@ -0,0 +1,142 @@
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1
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import { vec3 } from 'gl-matrix';
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import { cache, utilities, getWebWorkerManager, volumeLoader, imageLoader, metaData, Enums, triggerEvent, eventTarget, } from '@cornerstonejs/core';
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import { getAnnotation } from '../../..';
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import { WorkerTypes } from '../../../../enums';
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const workerManager = getWebWorkerManager();
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const triggerWorkerProgress = (eventTarget, progress) => {
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triggerEvent(eventTarget, Enums.Events.WEB_WORKER_PROGRESS, {
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progress,
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type: WorkerTypes.POLYSEG_CONTOUR_TO_LABELMAP,
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});
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};
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export async function convertContourToVolumeLabelmap(contourRepresentationData, options = {}) {
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const { viewport } = options;
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const imageIds = utilities.getViewportImageIds(viewport);
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if (!imageIds) {
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throw new Error('No imageIds found, labelmap computation from contour requires viewports with imageIds');
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}
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const segmentationVolumeId = utilities.uuidv4();
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const volumeProps = utilities.generateVolumePropsFromImageIds(imageIds, segmentationVolumeId);
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const { metadata, dimensions, origin, direction, spacing, scalarData } = volumeProps;
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const segmentationVolume = await volumeLoader.createLocalSegmentationVolume({
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dimensions,
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origin,
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direction,
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spacing,
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metadata,
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imageIds: imageIds.map((imageId) => `generated://${imageId}`),
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referencedImageIds: imageIds,
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}, segmentationVolumeId);
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const { segmentIndices, annotationUIDsInSegmentMap } = _getAnnotationMapFromSegmentation(contourRepresentationData, options);
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triggerWorkerProgress(eventTarget, 0);
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const newScalarData = await workerManager.executeTask('polySeg', 'convertContourToVolumeLabelmap', {
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segmentIndices,
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dimensions,
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scalarData,
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origin,
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direction,
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spacing,
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annotationUIDsInSegmentMap,
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}, {
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callbacks: [
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(progress) => {
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triggerWorkerProgress(eventTarget, progress);
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},
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],
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});
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triggerWorkerProgress(eventTarget, 100);
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segmentationVolume.imageData
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.getPointData()
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.getScalars()
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.setData(newScalarData);
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segmentationVolume.imageData.modified();
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segmentationVolume.modified();
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return {
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volumeId: segmentationVolume.volumeId,
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};
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}
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export async function convertContourToStackLabelmap(contourRepresentationData, options = {}) {
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if (!options.viewport) {
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throw new Error('No viewport provided, labelmap computation from contour requires viewports');
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}
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const viewport = options.viewport;
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const imageIds = viewport.getImageIds();
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if (!imageIds) {
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throw new Error('No imageIds found, labelmap computation from contour requires viewports with imageIds');
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}
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imageIds.forEach((imageId) => {
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if (!cache.getImageLoadObject(imageId)) {
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throw new Error('ImageIds must be cached before converting contour to labelmap');
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}
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});
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const { imageIds: segmentationImageIds } = await imageLoader.createAndCacheDerivedSegmentationImages(imageIds);
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const { segmentIndices, annotationUIDsInSegmentMap } = _getAnnotationMapFromSegmentation(contourRepresentationData, options);
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const segmentationsInfo = new Map();
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segmentationImageIds.forEach((segImageId, index) => {
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const segImage = cache.getImage(segImageId);
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const imagePlaneModule = metaData.get(Enums.MetadataModules.IMAGE_PLANE, segImageId);
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let { columnCosines, rowCosines, rowPixelSpacing, columnPixelSpacing, imagePositionPatient, } = imagePlaneModule;
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79
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columnCosines = columnCosines ?? [0, 1, 0];
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rowCosines = rowCosines ?? [1, 0, 0];
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81
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rowPixelSpacing = rowPixelSpacing ?? 1;
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columnPixelSpacing = columnPixelSpacing ?? 1;
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imagePositionPatient = imagePositionPatient ?? [0, 0, 0];
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84
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+
const rowCosineVec = vec3.fromValues(rowCosines[0], rowCosines[1], rowCosines[2]);
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85
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const colCosineVec = vec3.fromValues(columnCosines[0], columnCosines[1], columnCosines[2]);
|
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86
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+
const scanAxisNormal = vec3.create();
|
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87
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+
vec3.cross(scanAxisNormal, rowCosineVec, colCosineVec);
|
|
88
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+
const direction = [...rowCosineVec, ...colCosineVec, ...scanAxisNormal];
|
|
89
|
+
const spacing = [rowPixelSpacing, columnPixelSpacing, 1];
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90
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+
const origin = imagePositionPatient;
|
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91
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+
segmentationsInfo.set(imageIds[index], {
|
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92
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direction,
|
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93
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spacing,
|
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origin,
|
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95
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+
scalarData: segImage.getPixelData(),
|
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96
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+
imageId: segImageId,
|
|
97
|
+
dimensions: [segImage.width, segImage.height, 1],
|
|
98
|
+
});
|
|
99
|
+
});
|
|
100
|
+
triggerWorkerProgress(eventTarget, 0);
|
|
101
|
+
const newSegmentationsScalarData = await workerManager.executeTask('polySeg', 'convertContourToStackLabelmap', {
|
|
102
|
+
segmentationsInfo,
|
|
103
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+
annotationUIDsInSegmentMap,
|
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+
segmentIndices,
|
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105
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+
}, {
|
|
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+
callbacks: [
|
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107
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+
(progress) => {
|
|
108
|
+
triggerWorkerProgress(eventTarget, progress);
|
|
109
|
+
},
|
|
110
|
+
],
|
|
111
|
+
});
|
|
112
|
+
triggerWorkerProgress(eventTarget, 100);
|
|
113
|
+
const imageIdReferenceMap = new Map();
|
|
114
|
+
newSegmentationsScalarData.forEach(({ scalarData }, referencedImageId) => {
|
|
115
|
+
const segmentationInfo = segmentationsInfo.get(referencedImageId);
|
|
116
|
+
const { imageId: segImageId } = segmentationInfo;
|
|
117
|
+
const segImage = cache.getImage(segImageId);
|
|
118
|
+
segImage.getPixelData().set(scalarData);
|
|
119
|
+
segImage.imageFrame?.pixelData?.set(scalarData);
|
|
120
|
+
imageIdReferenceMap.set(referencedImageId, segImageId);
|
|
121
|
+
});
|
|
122
|
+
return {
|
|
123
|
+
imageIdReferenceMap,
|
|
124
|
+
};
|
|
125
|
+
}
|
|
126
|
+
function _getAnnotationMapFromSegmentation(contourRepresentationData, options = {}) {
|
|
127
|
+
const annotationMap = contourRepresentationData.annotationUIDsMap;
|
|
128
|
+
const segmentIndices = options.segmentIndices?.length
|
|
129
|
+
? options.segmentIndices
|
|
130
|
+
: Array.from(annotationMap.keys());
|
|
131
|
+
const annotationUIDsInSegmentMap = new Map();
|
|
132
|
+
segmentIndices.forEach((index) => {
|
|
133
|
+
const annotationUIDsInSegment = annotationMap.get(index);
|
|
134
|
+
const annotations = Array.from(annotationUIDsInSegment).map((uid) => {
|
|
135
|
+
const annotation = getAnnotation(uid);
|
|
136
|
+
return annotation;
|
|
137
|
+
});
|
|
138
|
+
annotationUIDsInSegmentMap.set(index, annotations);
|
|
139
|
+
});
|
|
140
|
+
return { segmentIndices, annotationUIDsInSegmentMap };
|
|
141
|
+
}
|
|
142
|
+
//# sourceMappingURL=convertContourToLabelmap.js.map
|
package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"convertContourToLabelmap.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Labelmap/convertContourToLabelmap.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,IAAI,EAAE,MAAM,WAAW,CAAC;AACjC,OAAO,EAEL,KAAK,EACL,SAAS,EACT,mBAAmB,EACnB,YAAY,EACZ,WAAW,EACX,QAAQ,EACR,KAAK,EACL,YAAY,EACZ,WAAW,GACZ,MAAM,qBAAqB,CAAC;AAM7B,OAAO,EAAE,aAAa,EAAE,MAAM,UAAU,CAAC;AACzC,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAEhD,MAAM,aAAa,GAAG,mBAAmB,EAAE,CAAC;AAE5C,MAAM,qBAAqB,GAAG,CAAC,WAAW,EAAE,QAAQ,EAAE,EAAE;IACtD,YAAY,CAAC,WAAW,EAAE,KAAK,CAAC,MAAM,CAAC,mBAAmB,EAAE;QAC1D,QAAQ;QACR,IAAI,EAAE,WAAW,CAAC,2BAA2B;KAC9C,CAAC,CAAC;AACL,CAAC,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,8BAA8B,CAClD,yBAAkD,EAClD,UAAoC,EAAE;IAEtC,MAAM,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC;IAE7B,MAAM,QAAQ,GAAG,SAAS,CAAC,mBAAmB,CAAC,QAAQ,CAAC,CAAC;IAEzD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CACb,uFAAuF,CACxF,CAAC;KACH;IAED,MAAM,oBAAoB,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC;IAEhD,MAAM,WAAW,GAAG,SAAS,CAAC,+BAA+B,CAC3D,QAAQ,EACR,oBAAoB,CACrB,CAAC;IAEF,MAAM,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,EAAE,SAAS,EAAE,OAAO,EAAE,UAAU,EAAE,GACpE,WAAW,CAAC;IAEd,MAAM,kBAAkB,GAAG,MAAM,YAAY,CAAC,6BAA6B,CACzE;QACE,UAAU;QACV,MAAM;QACN,SAAS;QACT,OAAO;QACP,QAAQ;QACR,QAAQ,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,eAAe,OAAO,EAAE,CAAC;QAC7D,kBAAkB,EAAE,QAAQ;KAC7B,EACD,oBAAoB,CACrB,CAAC;IAEF,MAAM,EAAE,cAAc,EAAE,0BAA0B,EAAE,GAClD,iCAAiC,CAAC,yBAAyB,EAAE,OAAO,CAAC,CAAC;IAExE,qBAAqB,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;IAEtC,MAAM,aAAa,GAAG,MAAM,aAAa,CAAC,WAAW,CACnD,SAAS,EACT,gCAAgC,EAChC;QACE,cAAc;QACd,UAAU;QACV,UAAU;QACV,MAAM;QACN,SAAS;QACT,OAAO;QACP,0BAA0B;KAC3B,EACD;QACE,SAAS,EAAE;YACT,CAAC,QAAQ,EAAE,EAAE;gBACX,qBAAqB,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC;YAC/C,CAAC;SACF;KACF,CACF,CAAC;IAEF,qBAAqB,CAAC,WAAW,EAAE,GAAG,CAAC,CAAC;IAExC,kBAAkB,CAAC,SAAS;SACzB,YAAY,EAAE;SACd,UAAU,EAAE;SACZ,OAAO,CAAC,aAAa,CAAC,CAAC;IAC1B,kBAAkB,CAAC,SAAS,CAAC,QAAQ,EAAE,CAAC;IAGxC,kBAAkB,CAAC,QAAQ,EAAE,CAAC;IAE9B,OAAO;QACL,QAAQ,EAAE,kBAAkB,CAAC,QAAQ;KACtC,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,6BAA6B,CACjD,yBAAkD,EAClD,UAAoC,EAAE;IAEtC,IAAI,CAAC,OAAO,CAAC,QAAQ,EAAE;QACrB,MAAM,IAAI,KAAK,CACb,4EAA4E,CAC7E,CAAC;KACH;IAED,MAAM,QAAQ,GAAG,OAAO,CAAC,QAAgC,CAAC;IAE1D,MAAM,QAAQ,GAAG,QAAQ,CAAC,WAAW,EAAE,CAAC;IAExC,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CACb,uFAAuF,CACxF,CAAC;KACH;IAGD,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE;QAC3B,IAAI,CAAC,KAAK,CAAC,kBAAkB,CAAC,OAAO,CAAC,EAAE;YACtC,MAAM,IAAI,KAAK,CACb,+DAA+D,CAChE,CAAC;SACH;IACH,CAAC,CAAC,CAAC;IAGH,MAAM,EAAE,QAAQ,EAAE,oBAAoB,EAAE,GACtC,MAAM,WAAW,CAAC,uCAAuC,CAAC,QAAQ,CAAC,CAAC;IAEtE,MAAM,EAAE,cAAc,EAAE,0BAA0B,EAAE,GAClD,iCAAiC,CAAC,yBAAyB,EAAE,OAAO,CAAC,CAAC;IAIxE,MAAM,iBAAiB,GAAG,IAAI,GAAG,EAAE,CAAC;IAGpC,oBAAoB,CAAC,OAAO,CAAC,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE;QAEjD,MAAM,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC;QAG5C,MAAM,gBAAgB,GAAG,QAAQ,CAAC,GAAG,CACnC,KAAK,CAAC,eAAe,CAAC,WAAW,EACjC,UAAU,CACX,CAAC;QAGF,IAAI,EACF,aAAa,EACb,UAAU,EACV,eAAe,EACf,kBAAkB,EAClB,oBAAoB,GACrB,GAAG,gBAAgB,CAAC;QAGrB,aAAa,GAAG,aAAa,IAAI,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QAC3C,UAAU,GAAG,UAAU,IAAI,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QACrC,eAAe,GAAG,eAAe,IAAI,CAAC,CAAC;QACvC,kBAAkB,GAAG,kBAAkB,IAAI,CAAC,CAAC;QAC7C,oBAAoB,GAAG,oBAAoB,IAAI,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QAGzD,MAAM,YAAY,GAAG,IAAI,CAAC,UAAU,CAClC,UAAU,CAAC,CAAC,CAAC,EACb,UAAU,CAAC,CAAC,CAAC,EACb,UAAU,CAAC,CAAC,CAAC,CACd,CAAC;QACF,MAAM,YAAY,GAAG,IAAI,CAAC,UAAU,CAClC,aAAa,CAAC,CAAC,CAAC,EAChB,aAAa,CAAC,CAAC,CAAC,EAChB,aAAa,CAAC,CAAC,CAAC,CACjB,CAAC;QAGF,MAAM,cAAc,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC;QACrC,IAAI,CAAC,KAAK,CAAC,cAAc,EAAE,YAAY,EAAE,YAAY,CAAC,CAAC;QAGvD,MAAM,SAAS,GAAG,CAAC,GAAG,YAAY,EAAE,GAAG,YAAY,EAAE,GAAG,cAAc,CAAC,CAAC;QACxE,MAAM,OAAO,GAAG,CAAC,eAAe,EAAE,kBAAkB,EAAE,CAAC,CAAC,CAAC;QAGzD,MAAM,MAAM,GAAG,oBAAoB,CAAC;QAGpC,iBAAiB,CAAC,GAAG,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE;YACrC,SAAS;YACT,OAAO;YACP,MAAM;YACN,UAAU,EAAE,QAAQ,CAAC,YAAY,EAAE;YACnC,OAAO,EAAE,UAAU;YACnB,UAAU,EAAE,CAAC,QAAQ,CAAC,KAAK,EAAE,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC;SACjD,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IAEH,qBAAqB,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;IAEtC,MAAM,0BAA0B,GAAG,MAAM,aAAa,CAAC,WAAW,CAChE,SAAS,EACT,+BAA+B,EAC/B;QACE,iBAAiB;QACjB,0BAA0B;QAC1B,cAAc;KACf,EACD;QACE,SAAS,EAAE;YACT,CAAC,QAAQ,EAAE,EAAE;gBACX,qBAAqB,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC;YAC/C,CAAC;SACF;KACF,CACF,CAAC;IAEF,qBAAqB,CAAC,WAAW,EAAE,GAAG,CAAC,CAAC;IAExC,MAAM,mBAAmB,GAAG,IAAI,GAAG,EAAE,CAAC;IACtC,0BAA0B,CAAC,OAAO,CAAC,CAAC,EAAE,UAAU,EAAE,EAAE,iBAAiB,EAAE,EAAE;QACvE,MAAM,gBAAgB,GAAG,iBAAiB,CAAC,GAAG,CAAC,iBAAiB,CAAC,CAAC;QAClE,MAAM,EAAE,OAAO,EAAE,UAAU,EAAE,GAAG,gBAAgB,CAAC;QAEjD,MAAM,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC;QAC5C,QAAQ,CAAC,YAAY,EAAE,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;QACxC,QAAQ,CAAC,UAAU,EAAE,SAAS,EAAE,GAAG,CAAC,UAAU,CAAC,CAAC;QAEhD,mBAAmB,CAAC,GAAG,CAAC,iBAAiB,EAAE,UAAU,CAAC,CAAC;IACzD,CAAC,CAAC,CAAC;IAEH,OAAO;QACL,mBAAmB;KACpB,CAAC;AACJ,CAAC;AAED,SAAS,iCAAiC,CACxC,yBAAkD,EAClD,UAAoC,EAAE;IAEtC,MAAM,aAAa,GAAG,yBAAyB,CAAC,iBAAiB,CAAC;IAElE,MAAM,cAAc,GAAG,OAAO,CAAC,cAAc,EAAE,MAAM;QACnD,CAAC,CAAC,OAAO,CAAC,cAAc;QACxB,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,aAAa,CAAC,IAAI,EAAE,CAAC,CAAC;IAErC,MAAM,0BAA0B,GAAG,IAAI,GAAG,EAAwB,CAAC;IACnE,cAAc,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE;QAC/B,MAAM,uBAAuB,GAAG,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;QAEzD,MAAM,WAAW,GAAG,KAAK,CAAC,IAAI,CAAC,uBAAuB,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,EAAE,EAAE;YAClE,MAAM,UAAU,GAAG,aAAa,CAAC,GAAG,CAAC,CAAC;YAEtC,OAAO,UAAU,CAAC;QACpB,CAAC,CAAC,CAAC;QAEH,0BAA0B,CAAC,GAAG,CAAC,KAAK,EAAE,WAAW,CAAC,CAAC;IACrD,CAAC,CAAC,CAAC;IAEH,OAAO,EAAE,cAAc,EAAE,0BAA0B,EAAE,CAAC;AACxD,CAAC"}
|
|
@@ -0,0 +1,53 @@
|
|
|
1
|
+
import { Enums, cache, eventTarget, getWebWorkerManager, triggerEvent, } from '@cornerstonejs/core';
|
|
2
|
+
import { WorkerTypes } from '../../../../enums';
|
|
3
|
+
const workerManager = getWebWorkerManager();
|
|
4
|
+
const triggerWorkerProgress = (eventTarget, progress) => {
|
|
5
|
+
triggerEvent(eventTarget, Enums.Events.WEB_WORKER_PROGRESS, {
|
|
6
|
+
progress,
|
|
7
|
+
type: WorkerTypes.POLYSEG_SURFACE_TO_LABELMAP,
|
|
8
|
+
});
|
|
9
|
+
};
|
|
10
|
+
export async function convertSurfaceToVolumeLabelmap(surfaceRepresentationData, segmentationVolume) {
|
|
11
|
+
const { geometryIds } = surfaceRepresentationData;
|
|
12
|
+
if (!geometryIds?.size) {
|
|
13
|
+
throw new Error('No geometry IDs found for surface representation');
|
|
14
|
+
}
|
|
15
|
+
const segmentsInfo = new Map();
|
|
16
|
+
geometryIds.forEach((geometryId, segmentIndex) => {
|
|
17
|
+
const geometry = cache.getGeometry(geometryId);
|
|
18
|
+
const geometryData = geometry.data;
|
|
19
|
+
const points = geometryData.getPoints();
|
|
20
|
+
const polys = geometryData.getPolys();
|
|
21
|
+
segmentsInfo.set(segmentIndex, {
|
|
22
|
+
points,
|
|
23
|
+
polys,
|
|
24
|
+
});
|
|
25
|
+
});
|
|
26
|
+
const { dimensions, direction, origin, spacing } = segmentationVolume;
|
|
27
|
+
triggerWorkerProgress(eventTarget, 0);
|
|
28
|
+
const newScalarData = await workerManager.executeTask('polySeg', 'convertSurfacesToVolumeLabelmap', {
|
|
29
|
+
segmentsInfo,
|
|
30
|
+
dimensions,
|
|
31
|
+
spacing,
|
|
32
|
+
direction,
|
|
33
|
+
origin,
|
|
34
|
+
}, {
|
|
35
|
+
callbacks: [
|
|
36
|
+
(progress) => {
|
|
37
|
+
triggerWorkerProgress(eventTarget, progress);
|
|
38
|
+
},
|
|
39
|
+
],
|
|
40
|
+
});
|
|
41
|
+
triggerWorkerProgress(eventTarget, 100);
|
|
42
|
+
segmentationVolume.imageData
|
|
43
|
+
.getPointData()
|
|
44
|
+
.getScalars()
|
|
45
|
+
.setData(newScalarData);
|
|
46
|
+
segmentationVolume.imageData.modified();
|
|
47
|
+
segmentationVolume.modified();
|
|
48
|
+
return {
|
|
49
|
+
volumeId: segmentationVolume.volumeId,
|
|
50
|
+
};
|
|
51
|
+
}
|
|
52
|
+
export async function convertSurfaceToStackLabelmap() { }
|
|
53
|
+
//# sourceMappingURL=convertSurfaceToLabelmap.js.map
|
package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"convertSurfaceToLabelmap.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Labelmap/convertSurfaceToLabelmap.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,KAAK,EAEL,KAAK,EACL,WAAW,EACX,mBAAmB,EACnB,YAAY,GACb,MAAM,qBAAqB,CAAC;AAE7B,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAEhD,MAAM,aAAa,GAAG,mBAAmB,EAAE,CAAC;AAE5C,MAAM,qBAAqB,GAAG,CAAC,WAAW,EAAE,QAAQ,EAAE,EAAE;IACtD,YAAY,CAAC,WAAW,EAAE,KAAK,CAAC,MAAM,CAAC,mBAAmB,EAAE;QAC1D,QAAQ;QACR,IAAI,EAAE,WAAW,CAAC,2BAA2B;KAC9C,CAAC,CAAC;AACL,CAAC,CAAC;AAEF,MAAM,CAAC,KAAK,UAAU,8BAA8B,CAClD,yBAAkD,EAClD,kBAAsC;IAEtC,MAAM,EAAE,WAAW,EAAE,GAAG,yBAAyB,CAAC;IAClD,IAAI,CAAC,WAAW,EAAE,IAAI,EAAE;QACtB,MAAM,IAAI,KAAK,CAAC,kDAAkD,CAAC,CAAC;KACrE;IAED,MAAM,YAAY,GAAG,IAAI,GAAG,EAM3B,CAAC;IAEF,WAAW,CAAC,OAAO,CAAC,CAAC,UAAU,EAAE,YAAY,EAAE,EAAE;QAC/C,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAC;QAC/C,MAAM,YAAY,GAAG,QAAQ,CAAC,IAAsB,CAAC;QACrD,MAAM,MAAM,GAAG,YAAY,CAAC,SAAS,EAAE,CAAC;QACxC,MAAM,KAAK,GAAG,YAAY,CAAC,QAAQ,EAAE,CAAC;QAEtC,YAAY,CAAC,GAAG,CAAC,YAAY,EAAE;YAC7B,MAAM;YACN,KAAK;SACN,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IAEH,MAAM,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,EAAE,OAAO,EAAE,GAAG,kBAAkB,CAAC;IAEtE,qBAAqB,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;IAEtC,MAAM,aAAa,GAAG,MAAM,aAAa,CAAC,WAAW,CACnD,SAAS,EACT,iCAAiC,EACjC;QACE,YAAY;QACZ,UAAU;QACV,OAAO;QACP,SAAS;QACT,MAAM;KACP,EACD;QACE,SAAS,EAAE;YACT,CAAC,QAAQ,EAAE,EAAE;gBACX,qBAAqB,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC;YAC/C,CAAC;SACF;KACF,CACF,CAAC;IAEF,qBAAqB,CAAC,WAAW,EAAE,GAAG,CAAC,CAAC;IAExC,kBAAkB,CAAC,SAAS;SACzB,YAAY,EAAE;SACd,UAAU,EAAE;SACZ,OAAO,CAAC,aAAa,CAAC,CAAC;IAC1B,kBAAkB,CAAC,SAAS,CAAC,QAAQ,EAAE,CAAC;IAGxC,kBAAkB,CAAC,QAAQ,EAAE,CAAC;IAE9B,OAAO;QACL,QAAQ,EAAE,kBAAkB,CAAC,QAAQ;KACtC,CAAC;AACJ,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,6BAA6B,KAAI,CAAC"}
|
package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.js
ADDED
|
@@ -0,0 +1,108 @@
|
|
|
1
|
+
import { VolumeViewport, volumeLoader, utilities, } from '@cornerstonejs/core';
|
|
2
|
+
import { getUniqueSegmentIndices } from '../../../../utilities/segmentation';
|
|
3
|
+
import { getSegmentation } from '../../segmentationState';
|
|
4
|
+
import { convertContourToStackLabelmap, convertContourToVolumeLabelmap, } from './convertContourToLabelmap';
|
|
5
|
+
import { convertSurfaceToVolumeLabelmap } from './convertSurfaceToLabelmap';
|
|
6
|
+
import { computeStackSegmentationFromVolume } from '../../convertVolumeToStackSegmentation';
|
|
7
|
+
export async function computeLabelmapData(segmentationId, options = {}) {
|
|
8
|
+
const segmentIndices = options.segmentIndices?.length
|
|
9
|
+
? options.segmentIndices
|
|
10
|
+
: getUniqueSegmentIndices(segmentationId);
|
|
11
|
+
let rawLabelmapData;
|
|
12
|
+
const segmentation = getSegmentation(segmentationId);
|
|
13
|
+
const representationData = segmentation.representationData;
|
|
14
|
+
try {
|
|
15
|
+
if (representationData.CONTOUR) {
|
|
16
|
+
rawLabelmapData = await computeLabelmapFromContourSegmentation(segmentationId, {
|
|
17
|
+
segmentIndices,
|
|
18
|
+
...options,
|
|
19
|
+
});
|
|
20
|
+
}
|
|
21
|
+
else if (representationData.SURFACE) {
|
|
22
|
+
rawLabelmapData = await computeLabelmapFromSurfaceSegmentation(segmentation.segmentationId, {
|
|
23
|
+
segmentIndices,
|
|
24
|
+
...options,
|
|
25
|
+
});
|
|
26
|
+
}
|
|
27
|
+
}
|
|
28
|
+
catch (error) {
|
|
29
|
+
console.error(error);
|
|
30
|
+
throw error;
|
|
31
|
+
}
|
|
32
|
+
if (!rawLabelmapData) {
|
|
33
|
+
throw new Error('Not enough data to convert to surface, currently only support converting volume labelmap to surface if available');
|
|
34
|
+
}
|
|
35
|
+
return rawLabelmapData;
|
|
36
|
+
}
|
|
37
|
+
async function computeLabelmapFromContourSegmentation(segmentationId, options = {}) {
|
|
38
|
+
const isVolume = options.viewport instanceof VolumeViewport ?? true;
|
|
39
|
+
if (isVolume && !options.viewport) {
|
|
40
|
+
throw new Error('Cannot compute labelmap from contour segmentation without providing the viewport');
|
|
41
|
+
}
|
|
42
|
+
const segmentIndices = options.segmentIndices?.length
|
|
43
|
+
? options.segmentIndices
|
|
44
|
+
: getUniqueSegmentIndices(segmentationId);
|
|
45
|
+
const segmentation = getSegmentation(segmentationId);
|
|
46
|
+
const representationData = segmentation.representationData.CONTOUR;
|
|
47
|
+
let result;
|
|
48
|
+
if (isVolume) {
|
|
49
|
+
result = await convertContourToVolumeLabelmap(representationData, {
|
|
50
|
+
segmentIndices,
|
|
51
|
+
segmentationRepresentationUID: options.segmentationRepresentationUID,
|
|
52
|
+
viewport: options.viewport,
|
|
53
|
+
});
|
|
54
|
+
}
|
|
55
|
+
else {
|
|
56
|
+
result = await convertContourToStackLabelmap(representationData, {
|
|
57
|
+
segmentIndices,
|
|
58
|
+
segmentationRepresentationUID: options.segmentationRepresentationUID,
|
|
59
|
+
viewport: options.viewport,
|
|
60
|
+
});
|
|
61
|
+
}
|
|
62
|
+
return result;
|
|
63
|
+
}
|
|
64
|
+
async function computeLabelmapFromSurfaceSegmentation(segmentationId, options = {}) {
|
|
65
|
+
const isVolume = options.viewport instanceof VolumeViewport ?? true;
|
|
66
|
+
const segmentIndices = options.segmentIndices?.length
|
|
67
|
+
? options.segmentIndices
|
|
68
|
+
: getUniqueSegmentIndices(segmentationId);
|
|
69
|
+
const segmentation = getSegmentation(segmentationId);
|
|
70
|
+
const segmentsGeometryIds = new Map();
|
|
71
|
+
const representationData = segmentation.representationData.SURFACE;
|
|
72
|
+
representationData.geometryIds.forEach((geometryId, segmentIndex) => {
|
|
73
|
+
if (segmentIndices.includes(segmentIndex)) {
|
|
74
|
+
segmentsGeometryIds.set(segmentIndex, geometryId);
|
|
75
|
+
}
|
|
76
|
+
});
|
|
77
|
+
if (isVolume && !options.viewport) {
|
|
78
|
+
throw new Error('Cannot compute labelmap from surface segmentation without providing the viewport');
|
|
79
|
+
}
|
|
80
|
+
let segmentationVolume;
|
|
81
|
+
if (isVolume) {
|
|
82
|
+
const defaultActor = options.viewport.getDefaultActor();
|
|
83
|
+
const { uid: volumeId } = defaultActor;
|
|
84
|
+
segmentationVolume =
|
|
85
|
+
await volumeLoader.createAndCacheDerivedSegmentationVolume(volumeId);
|
|
86
|
+
}
|
|
87
|
+
else {
|
|
88
|
+
const imageIds = options.viewport.getImageIds();
|
|
89
|
+
const volumeId = 'generatedSegmentationVolumeId';
|
|
90
|
+
const volumeProps = utilities.generateVolumePropsFromImageIds(imageIds, volumeId);
|
|
91
|
+
delete volumeProps.imageIds;
|
|
92
|
+
segmentationVolume = await volumeLoader.createLocalSegmentationVolume({
|
|
93
|
+
...volumeProps,
|
|
94
|
+
scalarData: volumeProps.scalarData,
|
|
95
|
+
referencedImageIds: imageIds,
|
|
96
|
+
}, volumeId);
|
|
97
|
+
}
|
|
98
|
+
const result = await convertSurfaceToVolumeLabelmap({ geometryIds: segmentsGeometryIds }, segmentationVolume);
|
|
99
|
+
if (isVolume) {
|
|
100
|
+
return result;
|
|
101
|
+
}
|
|
102
|
+
const stackData = (await computeStackSegmentationFromVolume({
|
|
103
|
+
volumeId: segmentationVolume.volumeId,
|
|
104
|
+
}));
|
|
105
|
+
return stackData;
|
|
106
|
+
}
|
|
107
|
+
export { computeLabelmapFromContourSegmentation };
|
|
108
|
+
//# sourceMappingURL=labelmapComputationStrategies.js.map
|
package/dist/esm/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"labelmapComputationStrategies.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Labelmap/labelmapComputationStrategies.ts"],"names":[],"mappings":"AAAA,OAAO,EAEL,cAAc,EACd,YAAY,EACZ,SAAS,GACV,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,uBAAuB,EAAE,MAAM,oCAAoC,CAAC;AAC7E,OAAO,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAK1D,OAAO,EACL,6BAA6B,EAC7B,8BAA8B,GAC/B,MAAM,4BAA4B,CAAC;AACpC,OAAO,EAAE,8BAA8B,EAAE,MAAM,4BAA4B,CAAC;AAC5E,OAAO,EAAE,kCAAkC,EAAE,MAAM,wCAAwC,CAAC;AAQ5F,MAAM,CAAC,KAAK,UAAU,mBAAmB,CACvC,cAAsB,EACtB,UAAoC,EAAE;IAEtC,MAAM,cAAc,GAAG,OAAO,CAAC,cAAc,EAAE,MAAM;QACnD,CAAC,CAAC,OAAO,CAAC,cAAc;QACxB,CAAC,CAAC,uBAAuB,CAAC,cAAc,CAAC,CAAC;IAE5C,IAAI,eAAgC,CAAC;IACrC,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IACrD,MAAM,kBAAkB,GAAG,YAAY,CAAC,kBAAkB,CAAC;IAE3D,IAAI;QACF,IAAI,kBAAkB,CAAC,OAAO,EAAE;YAC9B,eAAe,GAAG,MAAM,sCAAsC,CAC5D,cAAc,EACd;gBACE,cAAc;gBACd,GAAG,OAAO;aACX,CACF,CAAC;SACH;aAAM,IAAI,kBAAkB,CAAC,OAAO,EAAE;YACrC,eAAe,GAAG,MAAM,sCAAsC,CAC5D,YAAY,CAAC,cAAc,EAC3B;gBACE,cAAc;gBACd,GAAG,OAAO;aACX,CACF,CAAC;SACH;KACF;IAAC,OAAO,KAAK,EAAE;QACd,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;QACrB,MAAM,KAAK,CAAC;KACb;IAED,IAAI,CAAC,eAAe,EAAE;QACpB,MAAM,IAAI,KAAK,CACb,kHAAkH,CACnH,CAAC;KACH;IAED,OAAO,eAAe,CAAC;AACzB,CAAC;AAED,KAAK,UAAU,sCAAsC,CACnD,cAAc,EACd,UAAoC,EAAE;IAEtC,MAAM,QAAQ,GAAG,OAAO,CAAC,QAAQ,YAAY,cAAc,IAAI,IAAI,CAAC;IAEpE,IAAI,QAAQ,IAAI,CAAC,OAAO,CAAC,QAAQ,EAAE;QAMjC,MAAM,IAAI,KAAK,CACb,kFAAkF,CACnF,CAAC;KACH;IAED,MAAM,cAAc,GAAG,OAAO,CAAC,cAAc,EAAE,MAAM;QACnD,CAAC,CAAC,OAAO,CAAC,cAAc;QACxB,CAAC,CAAC,uBAAuB,CAAC,cAAc,CAAC,CAAC;IAE5C,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IACrD,MAAM,kBAAkB,GAAG,YAAY,CAAC,kBAAkB,CAAC,OAAO,CAAC;IAEnE,IAAI,MAAM,CAAC;IAEX,IAAI,QAAQ,EAAE;QACZ,MAAM,GAAG,MAAM,8BAA8B,CAAC,kBAAkB,EAAE;YAChE,cAAc;YACd,6BAA6B,EAAE,OAAO,CAAC,6BAA6B;YACpE,QAAQ,EAAE,OAAO,CAAC,QAAQ;SAC3B,CAAC,CAAC;KACJ;SAAM;QACL,MAAM,GAAG,MAAM,6BAA6B,CAAC,kBAAkB,EAAE;YAC/D,cAAc;YACd,6BAA6B,EAAE,OAAO,CAAC,6BAA6B;YACpE,QAAQ,EAAE,OAAO,CAAC,QAAQ;SAC3B,CAAC,CAAC;KACJ;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,KAAK,UAAU,sCAAsC,CACnD,cAAc,EACd,UAAoC,EAAE;IAEtC,MAAM,QAAQ,GAAG,OAAO,CAAC,QAAQ,YAAY,cAAc,IAAI,IAAI,CAAC;IAEpE,MAAM,cAAc,GAAG,OAAO,CAAC,cAAc,EAAE,MAAM;QACnD,CAAC,CAAC,OAAO,CAAC,cAAc;QACxB,CAAC,CAAC,uBAAuB,CAAC,cAAc,CAAC,CAAC;IAE5C,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IAErD,MAAM,mBAAmB,GAAG,IAAI,GAAG,EAAyB,CAAC;IAC7D,MAAM,kBAAkB,GAAG,YAAY,CAAC,kBAAkB,CAAC,OAAO,CAAC;IACnE,kBAAkB,CAAC,WAAW,CAAC,OAAO,CAAC,CAAC,UAAU,EAAE,YAAY,EAAE,EAAE;QAClE,IAAI,cAAc,CAAC,QAAQ,CAAC,YAAY,CAAC,EAAE;YACzC,mBAAmB,CAAC,GAAG,CAAC,YAAY,EAAE,UAAU,CAAC,CAAC;SACnD;IACH,CAAC,CAAC,CAAC;IAEH,IAAI,QAAQ,IAAI,CAAC,OAAO,CAAC,QAAQ,EAAE;QAMjC,MAAM,IAAI,KAAK,CACb,kFAAkF,CACnF,CAAC;KACH;IAED,IAAI,kBAAkB,CAAC;IACvB,IAAI,QAAQ,EAAE;QACZ,MAAM,YAAY,GAAG,OAAO,CAAC,QAAQ,CAAC,eAAe,EAAE,CAAC;QACxD,MAAM,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,YAAY,CAAC;QACvC,kBAAkB;YAChB,MAAM,YAAY,CAAC,uCAAuC,CAAC,QAAQ,CAAC,CAAC;KACxE;SAAM;QAKL,MAAM,QAAQ,GAAI,OAAO,CAAC,QAAiC,CAAC,WAAW,EAAE,CAAC;QAC1E,MAAM,QAAQ,GAAG,+BAA+B,CAAC;QACjD,MAAM,WAAW,GAAG,SAAS,CAAC,+BAA+B,CAC3D,QAAQ,EACR,QAAQ,CACT,CAAC;QAIF,OAAO,WAAW,CAAC,QAAQ,CAAC;QAE5B,kBAAkB,GAAG,MAAM,YAAY,CAAC,6BAA6B,CACnE;YACE,GAAG,WAAW;YACd,UAAU,EAAE,WAAW,CAAC,UAAiC;YACzD,kBAAkB,EAAE,QAAQ;SAC7B,EACD,QAAQ,CACT,CAAC;KACH;IAED,MAAM,MAAM,GAAG,MAAM,8BAA8B,CACjD,EAAE,WAAW,EAAE,mBAAmB,EAAE,EACpC,kBAAkB,CACnB,CAAC;IAEF,IAAI,QAAQ,EAAE;QACZ,OAAO,MAAM,CAAC;KACf;IAGD,MAAM,SAAS,GAAG,CAAC,MAAM,kCAAkC,CAAC;QAC1D,QAAQ,EAAE,kBAAkB,CAAC,QAAQ;KACtC,CAAC,CAAkC,CAAC;IAErC,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,OAAO,EAAE,sCAAsC,EAAE,CAAC"}
|
package/dist/esm/stateManagement/segmentation/polySeg/Surface/computeAndAddSurfaceRepresentation.js
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
1
|
+
import { SegmentationRepresentations } from '../../../../enums';
|
|
2
|
+
import { computeAndAddRepresentation } from '../computeAndAddRepresentation';
|
|
3
|
+
import { computeSurfaceData } from './surfaceComputationStrategies';
|
|
4
|
+
import { updateSurfaceData } from './updateSurfaceData';
|
|
5
|
+
export function computeAndAddSurfaceRepresentation(segmentationId, options = {}) {
|
|
6
|
+
return computeAndAddRepresentation(segmentationId, SegmentationRepresentations.Surface, () => computeSurfaceData(segmentationId, options), () => updateSurfaceData(segmentationId));
|
|
7
|
+
}
|
|
8
|
+
//# sourceMappingURL=computeAndAddSurfaceRepresentation.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"computeAndAddSurfaceRepresentation.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Surface/computeAndAddSurfaceRepresentation.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,2BAA2B,EAAE,MAAM,mBAAmB,CAAC;AAEhE,OAAO,EAAE,2BAA2B,EAAE,MAAM,gCAAgC,CAAC;AAC7E,OAAO,EAAE,kBAAkB,EAAE,MAAM,gCAAgC,CAAC;AACpE,OAAO,EAAE,iBAAiB,EAAE,MAAM,qBAAqB,CAAC;AAWxD,MAAM,UAAU,kCAAkC,CAChD,cAAsB,EACtB,UAAoC,EAAE;IAEtC,OAAO,2BAA2B,CAChC,cAAc,EACd,2BAA2B,CAAC,OAAO,EACnC,GAAG,EAAE,CAAC,kBAAkB,CAAC,cAAc,EAAE,OAAO,CAAC,EACjD,GAAG,EAAE,CAAC,iBAAiB,CAAC,cAAc,CAAC,CACxC,CAAC;AACJ,CAAC"}
|
|
@@ -0,0 +1,37 @@
|
|
|
1
|
+
import { Enums, eventTarget, triggerEvent } from '@cornerstonejs/core';
|
|
2
|
+
import { getWebWorkerManager } from '@cornerstonejs/core';
|
|
3
|
+
import { getAnnotation } from '../../../annotation/annotationState';
|
|
4
|
+
import { WorkerTypes } from '../../../../enums';
|
|
5
|
+
const workerManager = getWebWorkerManager();
|
|
6
|
+
const triggerWorkerProgress = (eventTarget, progress) => {
|
|
7
|
+
triggerEvent(eventTarget, Enums.Events.WEB_WORKER_PROGRESS, {
|
|
8
|
+
progress,
|
|
9
|
+
type: WorkerTypes.POLYSEG_CONTOUR_TO_SURFACE,
|
|
10
|
+
});
|
|
11
|
+
};
|
|
12
|
+
export async function convertContourToSurface(contourRepresentationData, segmentIndex) {
|
|
13
|
+
const { annotationUIDsMap } = contourRepresentationData;
|
|
14
|
+
const polylines = [];
|
|
15
|
+
const numPointsArray = [];
|
|
16
|
+
const annotationUIDs = annotationUIDsMap.get(segmentIndex);
|
|
17
|
+
for (const annotationUID of annotationUIDs) {
|
|
18
|
+
const annotation = getAnnotation(annotationUID);
|
|
19
|
+
const { polyline } = annotation.data.contour;
|
|
20
|
+
numPointsArray.push(polyline.length);
|
|
21
|
+
polyline.forEach((polyline) => polylines.push(...polyline));
|
|
22
|
+
}
|
|
23
|
+
triggerWorkerProgress(eventTarget, 0);
|
|
24
|
+
const results = await workerManager.executeTask('polySeg', 'convertContourToSurface', {
|
|
25
|
+
polylines,
|
|
26
|
+
numPointsArray,
|
|
27
|
+
}, {
|
|
28
|
+
callbacks: [
|
|
29
|
+
(progress) => {
|
|
30
|
+
triggerWorkerProgress(eventTarget, progress);
|
|
31
|
+
},
|
|
32
|
+
],
|
|
33
|
+
});
|
|
34
|
+
triggerWorkerProgress(eventTarget, 100);
|
|
35
|
+
return results;
|
|
36
|
+
}
|
|
37
|
+
//# sourceMappingURL=convertContourToSurface.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"convertContourToSurface.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Surface/convertContourToSurface.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAS,WAAW,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAC9E,OAAO,EAAE,mBAAmB,EAAE,MAAM,qBAAqB,CAAC;AAE1D,OAAO,EAAE,aAAa,EAAE,MAAM,qCAAqC,CAAC;AACpE,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAEhD,MAAM,aAAa,GAAG,mBAAmB,EAAE,CAAC;AAE5C,MAAM,qBAAqB,GAAG,CAAC,WAAW,EAAE,QAAQ,EAAE,EAAE;IACtD,YAAY,CAAC,WAAW,EAAE,KAAK,CAAC,MAAM,CAAC,mBAAmB,EAAE;QAC1D,QAAQ;QACR,IAAI,EAAE,WAAW,CAAC,0BAA0B;KAC7C,CAAC,CAAC;AACL,CAAC,CAAC;AASF,MAAM,CAAC,KAAK,UAAU,uBAAuB,CAC3C,yBAAkD,EAClD,YAAoB;IAEpB,MAAM,EAAE,iBAAiB,EAAE,GAAG,yBAAyB,CAAC;IAGxD,MAAM,SAAS,GAAG,EAAE,CAAC;IACrB,MAAM,cAAc,GAAG,EAAE,CAAC;IAC1B,MAAM,cAAc,GAAG,iBAAiB,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;IAE3D,KAAK,MAAM,aAAa,IAAI,cAAc,EAAE;QAC1C,MAAM,UAAU,GAAG,aAAa,CAAC,aAAa,CAAC,CAAC;QAChD,MAAM,EAAE,QAAQ,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,OAAO,CAAC;QAC7C,cAAc,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;QACrC,QAAQ,CAAC,OAAO,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC;KAC7D;IAED,qBAAqB,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;IAEtC,MAAM,OAAO,GAAG,MAAM,aAAa,CAAC,WAAW,CAC7C,SAAS,EACT,yBAAyB,EACzB;QACE,SAAS;QACT,cAAc;KACf,EACD;QACE,SAAS,EAAE;YACT,CAAC,QAAQ,EAAE,EAAE;gBACX,qBAAqB,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC;YAC/C,CAAC;SACF;KACF,CACF,CAAC;IAEF,qBAAqB,CAAC,WAAW,EAAE,GAAG,CAAC,CAAC;IAExC,OAAO,OAAO,CAAC;AACjB,CAAC"}
|
|
@@ -0,0 +1,45 @@
|
|
|
1
|
+
import { cache, eventTarget, triggerEvent, Enums, } from '@cornerstonejs/core';
|
|
2
|
+
import { getWebWorkerManager } from '@cornerstonejs/core';
|
|
3
|
+
import { computeVolumeSegmentationFromStack } from '../../convertStackToVolumeSegmentation';
|
|
4
|
+
import { WorkerTypes } from '../../../../enums';
|
|
5
|
+
const workerManager = getWebWorkerManager();
|
|
6
|
+
const triggerWorkerProgress = (eventTarget, progress) => {
|
|
7
|
+
triggerEvent(eventTarget, Enums.Events.WEB_WORKER_PROGRESS, {
|
|
8
|
+
progress,
|
|
9
|
+
type: WorkerTypes.POLYSEG_LABELMAP_TO_SURFACE,
|
|
10
|
+
});
|
|
11
|
+
};
|
|
12
|
+
export async function convertLabelmapToSurface(labelmapRepresentationData, segmentIndex, isVolume = true) {
|
|
13
|
+
let volumeId;
|
|
14
|
+
if (isVolume) {
|
|
15
|
+
volumeId = labelmapRepresentationData
|
|
16
|
+
.volumeId;
|
|
17
|
+
}
|
|
18
|
+
else {
|
|
19
|
+
const { imageIdReferenceMap } = labelmapRepresentationData;
|
|
20
|
+
({ volumeId } = await computeVolumeSegmentationFromStack({
|
|
21
|
+
imageIdReferenceMap,
|
|
22
|
+
}));
|
|
23
|
+
}
|
|
24
|
+
const volume = cache.getVolume(volumeId);
|
|
25
|
+
const scalarData = volume.getScalarData();
|
|
26
|
+
const { dimensions, spacing, origin, direction } = volume;
|
|
27
|
+
triggerWorkerProgress(eventTarget, 0);
|
|
28
|
+
const results = await workerManager.executeTask('polySeg', 'convertLabelmapToSurface', {
|
|
29
|
+
scalarData,
|
|
30
|
+
dimensions,
|
|
31
|
+
spacing,
|
|
32
|
+
origin,
|
|
33
|
+
direction,
|
|
34
|
+
segmentIndex,
|
|
35
|
+
}, {
|
|
36
|
+
callbacks: [
|
|
37
|
+
(progress) => {
|
|
38
|
+
triggerWorkerProgress(eventTarget, progress);
|
|
39
|
+
},
|
|
40
|
+
],
|
|
41
|
+
});
|
|
42
|
+
triggerWorkerProgress(eventTarget, 100);
|
|
43
|
+
return results;
|
|
44
|
+
}
|
|
45
|
+
//# sourceMappingURL=convertLabelmapToSurface.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"convertLabelmapToSurface.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Surface/convertLabelmapToSurface.ts"],"names":[],"mappings":"AAAA,OAAO,EAEL,KAAK,EACL,WAAW,EACX,YAAY,EACZ,KAAK,GACN,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EAAE,mBAAmB,EAAE,MAAM,qBAAqB,CAAC;AAM1D,OAAO,EAAE,kCAAkC,EAAE,MAAM,wCAAwC,CAAC;AAC5F,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAC;AAEhD,MAAM,aAAa,GAAG,mBAAmB,EAAE,CAAC;AAE5C,MAAM,qBAAqB,GAAG,CAAC,WAAW,EAAE,QAAQ,EAAE,EAAE;IACtD,YAAY,CAAC,WAAW,EAAE,KAAK,CAAC,MAAM,CAAC,mBAAmB,EAAE;QAC1D,QAAQ;QACR,IAAI,EAAE,WAAW,CAAC,2BAA2B;KAC9C,CAAC,CAAC;AACL,CAAC,CAAC;AAUF,MAAM,CAAC,KAAK,UAAU,wBAAwB,CAC5C,0BAAoD,EACpD,YAAoB,EACpB,QAAQ,GAAG,IAAI;IAEf,IAAI,QAAQ,CAAC;IACb,IAAI,QAAQ,EAAE;QACZ,QAAQ,GAAI,0BAA6D;aACtE,QAAQ,CAAC;KACb;SAAM;QACL,MAAM,EAAE,mBAAmB,EAAE,GAC3B,0BAA2D,CAAC;QAC9D,CAAC,EAAE,QAAQ,EAAE,GAAG,MAAM,kCAAkC,CAAC;YACvD,mBAAmB;SACpB,CAAC,CAAC,CAAC;KACL;IAED,MAAM,MAAM,GAAG,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC;IAEzC,MAAM,UAAU,GAAG,MAAM,CAAC,aAAa,EAAE,CAAC;IAC1C,MAAM,EAAE,UAAU,EAAE,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,GAAG,MAAM,CAAC;IAE1D,qBAAqB,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;IAEtC,MAAM,OAAO,GAAG,MAAM,aAAa,CAAC,WAAW,CAC7C,SAAS,EACT,0BAA0B,EAC1B;QACE,UAAU;QACV,UAAU;QACV,OAAO;QACP,MAAM;QACN,SAAS;QACT,YAAY;KACb,EACD;QACE,SAAS,EAAE;YACT,CAAC,QAAQ,EAAE,EAAE;gBACX,qBAAqB,CAAC,WAAW,EAAE,QAAQ,CAAC,CAAC;YAC/C,CAAC;SACF;KACF,CACF,CAAC;IAEF,qBAAqB,CAAC,WAAW,EAAE,GAAG,CAAC,CAAC;IAExC,OAAO,OAAO,CAAC;AACjB,CAAC"}
|
package/dist/esm/stateManagement/segmentation/polySeg/Surface/createAndCacheSurfacesFromRaw.js
ADDED
|
@@ -0,0 +1,41 @@
|
|
|
1
|
+
import { Enums, geometryLoader } from '@cornerstonejs/core';
|
|
2
|
+
import { getColorForSegmentIndex } from '../../config/segmentationColor';
|
|
3
|
+
import { findSegmentationRepresentationByUID, getSegmentation, } from '../../segmentationState';
|
|
4
|
+
export async function createAndCacheSurfacesFromRaw(segmentationId, rawSurfacesData, options = {}) {
|
|
5
|
+
let segmentationRepresentation, toolGroupId;
|
|
6
|
+
if (options.segmentationRepresentationUID) {
|
|
7
|
+
({ segmentationRepresentation, toolGroupId } =
|
|
8
|
+
findSegmentationRepresentationByUID(options.segmentationRepresentationUID));
|
|
9
|
+
}
|
|
10
|
+
const segmentation = getSegmentation(segmentationId);
|
|
11
|
+
const geometryIds = new Map();
|
|
12
|
+
const promises = Object.keys(rawSurfacesData).map(async (index) => {
|
|
13
|
+
const rawSurfaceData = rawSurfacesData[index];
|
|
14
|
+
const segmentIndex = rawSurfaceData.segmentIndex;
|
|
15
|
+
const color = segmentationRepresentation;
|
|
16
|
+
getColorForSegmentIndex(toolGroupId, segmentationRepresentation.segmentationRepresentationUID, segmentIndex).slice(0, 3);
|
|
17
|
+
if (!color) {
|
|
18
|
+
throw new Error('No color found for segment index, unable to create surface');
|
|
19
|
+
}
|
|
20
|
+
const closedSurface = {
|
|
21
|
+
id: `segmentation_${segmentation.segmentationId}_surface_${segmentIndex}`,
|
|
22
|
+
color,
|
|
23
|
+
frameOfReferenceUID: 'test-frameOfReferenceUID',
|
|
24
|
+
data: {
|
|
25
|
+
points: rawSurfaceData.data.points,
|
|
26
|
+
polys: rawSurfaceData.data.polys,
|
|
27
|
+
},
|
|
28
|
+
};
|
|
29
|
+
const geometryId = closedSurface.id;
|
|
30
|
+
geometryIds.set(segmentIndex, geometryId);
|
|
31
|
+
return geometryLoader.createAndCacheGeometry(geometryId, {
|
|
32
|
+
type: Enums.GeometryType.SURFACE,
|
|
33
|
+
geometryData: closedSurface,
|
|
34
|
+
});
|
|
35
|
+
});
|
|
36
|
+
await Promise.all(promises);
|
|
37
|
+
return {
|
|
38
|
+
geometryIds,
|
|
39
|
+
};
|
|
40
|
+
}
|
|
41
|
+
//# sourceMappingURL=createAndCacheSurfacesFromRaw.js.map
|
package/dist/esm/stateManagement/segmentation/polySeg/Surface/createAndCacheSurfacesFromRaw.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"createAndCacheSurfacesFromRaw.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Surface/createAndCacheSurfacesFromRaw.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAS,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACnE,OAAO,EAAE,uBAAuB,EAAE,MAAM,gCAAgC,CAAC;AACzE,OAAO,EACL,mCAAmC,EACnC,eAAe,GAChB,MAAM,yBAAyB,CAAC;AAcjC,MAAM,CAAC,KAAK,UAAU,6BAA6B,CACjD,cAAsB,EACtB,eAAgC,EAChC,UAAoC,EAAE;IAGtC,IAAI,0BAA+B,EAAE,WAAgB,CAAC;IACtD,IAAI,OAAO,CAAC,6BAA6B,EAAE;QACzC,CAAC,EAAE,0BAA0B,EAAE,WAAW,EAAE;YAC1C,mCAAmC,CACjC,OAAO,CAAC,6BAA6B,CACtC,CAAC,CAAC;KACN;IAED,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IAErD,MAAM,WAAW,GAAG,IAAI,GAAG,EAAkB,CAAC;IAG9C,MAAM,QAAQ,GAAG,MAAM,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,GAAG,CAAC,KAAK,EAAE,KAAa,EAAE,EAAE;QACxE,MAAM,cAAc,GAAG,eAAe,CAAC,KAAK,CAAC,CAAC;QAC9C,MAAM,YAAY,GAAG,cAAc,CAAC,YAAY,CAAC;QAGjD,MAAM,KAAK,GAAG,0BAA0B,CAAC;QACzC,uBAAuB,CACrB,WAAW,EACX,0BAA0B,CAAC,6BAA6B,EACxD,YAAY,CACb,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QAEd,IAAI,CAAC,KAAK,EAAE;YACV,MAAM,IAAI,KAAK,CACb,4DAA4D,CAC7D,CAAC;SACH;QAED,MAAM,aAAa,GAAG;YACpB,EAAE,EAAE,gBAAgB,YAAY,CAAC,cAAc,YAAY,YAAY,EAAE;YACzE,KAAK;YACL,mBAAmB,EAAE,0BAA0B;YAC/C,IAAI,EAAE;gBACJ,MAAM,EAAE,cAAc,CAAC,IAAI,CAAC,MAAM;gBAClC,KAAK,EAAE,cAAc,CAAC,IAAI,CAAC,KAAK;aACjC;SACF,CAAC;QAEF,MAAM,UAAU,GAAG,aAAa,CAAC,EAAE,CAAC;QACpC,WAAW,CAAC,GAAG,CAAC,YAAY,EAAE,UAAU,CAAC,CAAC;QAE1C,OAAO,cAAc,CAAC,sBAAsB,CAAC,UAAU,EAAE;YACvD,IAAI,EAAE,KAAK,CAAC,YAAY,CAAC,OAAO;YAChC,YAAY,EAAE,aAAwC;SACvD,CAAC,CAAC;IACL,CAAC,CAAC,CAAC;IAEH,MAAM,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;IAE5B,OAAO;QACL,WAAW;KACZ,CAAC;AACJ,CAAC"}
|
|
@@ -0,0 +1,78 @@
|
|
|
1
|
+
import { getUniqueSegmentIndices } from '../../../../utilities/segmentation';
|
|
2
|
+
import { getSegmentation } from '../../segmentationState';
|
|
3
|
+
import { convertContourToSurface } from './convertContourToSurface';
|
|
4
|
+
import { createAndCacheSurfacesFromRaw } from './createAndCacheSurfacesFromRaw';
|
|
5
|
+
import { isVolumeSegmentation } from '../../../../tools/segmentation/strategies/utils/stackVolumeCheck';
|
|
6
|
+
import { convertLabelmapToSurface } from './convertLabelmapToSurface';
|
|
7
|
+
export async function computeSurfaceData(segmentationId, options = {}) {
|
|
8
|
+
const segmentIndices = options.segmentIndices?.length
|
|
9
|
+
? options.segmentIndices
|
|
10
|
+
: getUniqueSegmentIndices(segmentationId);
|
|
11
|
+
let rawSurfacesData;
|
|
12
|
+
const segmentation = getSegmentation(segmentationId);
|
|
13
|
+
const representationData = segmentation.representationData;
|
|
14
|
+
try {
|
|
15
|
+
if (representationData.CONTOUR) {
|
|
16
|
+
rawSurfacesData = await computeSurfaceFromContourSegmentation(segmentationId, {
|
|
17
|
+
segmentIndices,
|
|
18
|
+
...options,
|
|
19
|
+
});
|
|
20
|
+
}
|
|
21
|
+
else if (representationData.LABELMAP) {
|
|
22
|
+
rawSurfacesData = await computeSurfaceFromLabelmapSegmentation(segmentation.segmentationId, {
|
|
23
|
+
segmentIndices,
|
|
24
|
+
...options,
|
|
25
|
+
});
|
|
26
|
+
}
|
|
27
|
+
}
|
|
28
|
+
catch (error) {
|
|
29
|
+
console.error(error);
|
|
30
|
+
throw error;
|
|
31
|
+
}
|
|
32
|
+
if (!rawSurfacesData) {
|
|
33
|
+
throw new Error('Not enough data to convert to surface, currently only support converting volume labelmap to surface if available');
|
|
34
|
+
}
|
|
35
|
+
const surfacesData = await createAndCacheSurfacesFromRaw(segmentationId, rawSurfacesData, options);
|
|
36
|
+
return surfacesData;
|
|
37
|
+
}
|
|
38
|
+
async function computeSurfaceFromLabelmapSegmentation(segmentationId, options = {}) {
|
|
39
|
+
const segmentation = getSegmentation(segmentationId);
|
|
40
|
+
if (!segmentation?.representationData?.LABELMAP) {
|
|
41
|
+
console.warn('Only support surface update from labelmaps');
|
|
42
|
+
return;
|
|
43
|
+
}
|
|
44
|
+
const isVolume = isVolumeSegmentation(segmentation.representationData.LABELMAP);
|
|
45
|
+
const labelmapRepresentationData = segmentation.representationData.LABELMAP;
|
|
46
|
+
const segmentIndices = options.segmentIndices || getUniqueSegmentIndices(segmentationId);
|
|
47
|
+
const promises = segmentIndices.map((index) => {
|
|
48
|
+
const surface = convertLabelmapToSurface(labelmapRepresentationData, index, isVolume);
|
|
49
|
+
return surface;
|
|
50
|
+
});
|
|
51
|
+
const surfaces = await Promise.allSettled(promises);
|
|
52
|
+
const errors = surfaces.filter((p) => p.status === 'rejected');
|
|
53
|
+
if (errors.length > 0) {
|
|
54
|
+
console.error(errors);
|
|
55
|
+
throw new Error('Failed to convert labelmap to surface');
|
|
56
|
+
}
|
|
57
|
+
const rawSurfacesData = surfaces
|
|
58
|
+
.map((surface, index) => {
|
|
59
|
+
if (surface.status === 'fulfilled') {
|
|
60
|
+
return { segmentIndex: segmentIndices[index], data: surface.value };
|
|
61
|
+
}
|
|
62
|
+
})
|
|
63
|
+
.filter(Boolean);
|
|
64
|
+
return rawSurfacesData;
|
|
65
|
+
}
|
|
66
|
+
async function computeSurfaceFromContourSegmentation(segmentationId, options = {}) {
|
|
67
|
+
const segmentation = getSegmentation(segmentationId);
|
|
68
|
+
const contourRepresentationData = segmentation.representationData.CONTOUR;
|
|
69
|
+
const segmentIndices = options.segmentIndices || getUniqueSegmentIndices(segmentationId);
|
|
70
|
+
const promises = segmentIndices.map(async (index) => {
|
|
71
|
+
const surface = await convertContourToSurface(contourRepresentationData, index);
|
|
72
|
+
return { segmentIndex: index, data: surface };
|
|
73
|
+
});
|
|
74
|
+
const surfaces = await Promise.all(promises);
|
|
75
|
+
return surfaces;
|
|
76
|
+
}
|
|
77
|
+
export { computeSurfaceFromContourSegmentation, computeSurfaceFromLabelmapSegmentation, };
|
|
78
|
+
//# sourceMappingURL=surfaceComputationStrategies.js.map
|
package/dist/esm/stateManagement/segmentation/polySeg/Surface/surfaceComputationStrategies.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"surfaceComputationStrategies.js","sourceRoot":"","sources":["../../../../../../src/stateManagement/segmentation/polySeg/Surface/surfaceComputationStrategies.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,uBAAuB,EAAE,MAAM,oCAAoC,CAAC;AAC7E,OAAO,EAAE,eAAe,EAAE,MAAM,yBAAyB,CAAC;AAC1D,OAAO,EAAE,uBAAuB,EAAE,MAAM,2BAA2B,CAAC;AACpE,OAAO,EAAE,6BAA6B,EAAE,MAAM,iCAAiC,CAAC;AAMhF,OAAO,EAAE,oBAAoB,EAAE,MAAM,kEAAkE,CAAC;AACxG,OAAO,EAAE,wBAAwB,EAAE,MAAM,4BAA4B,CAAC;AActE,MAAM,CAAC,KAAK,UAAU,kBAAkB,CACtC,cAAsB,EACtB,UAAoC,EAAE;IAEtC,MAAM,cAAc,GAAG,OAAO,CAAC,cAAc,EAAE,MAAM;QACnD,CAAC,CAAC,OAAO,CAAC,cAAc;QACxB,CAAC,CAAC,uBAAuB,CAAC,cAAc,CAAC,CAAC;IAE5C,IAAI,eAAgC,CAAC;IACrC,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IACrD,MAAM,kBAAkB,GAAG,YAAY,CAAC,kBAAkB,CAAC;IAE3D,IAAI;QACF,IAAI,kBAAkB,CAAC,OAAO,EAAE;YAC9B,eAAe,GAAG,MAAM,qCAAqC,CAC3D,cAAc,EACd;gBACE,cAAc;gBACd,GAAG,OAAO;aACX,CACF,CAAC;SACH;aAAM,IAAI,kBAAkB,CAAC,QAAoC,EAAE;YAElE,eAAe,GAAG,MAAM,sCAAsC,CAC5D,YAAY,CAAC,cAAc,EAC3B;gBACE,cAAc;gBACd,GAAG,OAAO;aACX,CACF,CAAC;SACH;KACF;IAAC,OAAO,KAAK,EAAE;QACd,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;QACrB,MAAM,KAAK,CAAC;KACb;IAED,IAAI,CAAC,eAAe,EAAE;QACpB,MAAM,IAAI,KAAK,CACb,kHAAkH,CACnH,CAAC;KACH;IAED,MAAM,YAAY,GAAG,MAAM,6BAA6B,CACtD,cAAc,EACd,eAAe,EACf,OAAO,CACR,CAAC;IAEF,OAAO,YAAY,CAAC;AACtB,CAAC;AAED,KAAK,UAAU,sCAAsC,CACnD,cAAc,EACd,UAAoC,EAAE;IAGtC,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IAErD,IAAI,CAAC,YAAY,EAAE,kBAAkB,EAAE,QAAQ,EAAE;QAC/C,OAAO,CAAC,IAAI,CAAC,4CAA4C,CAAC,CAAC;QAC3D,OAAO;KACR;IAED,MAAM,QAAQ,GAAG,oBAAoB,CACnC,YAAY,CAAC,kBAAkB,CAAC,QAAQ,CACzC,CAAC;IAEF,MAAM,0BAA0B,GAAG,YAAY,CAAC,kBAAkB,CAAC,QAAQ,CAAC;IAE5E,MAAM,cAAc,GAClB,OAAO,CAAC,cAAc,IAAI,uBAAuB,CAAC,cAAc,CAAC,CAAC;IAEpE,MAAM,QAAQ,GAAG,cAAc,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,EAAE;QAC5C,MAAM,OAAO,GAAG,wBAAwB,CACtC,0BAEiC,EACjC,KAAK,EACL,QAAQ,CACT,CAAC;QAEF,OAAO,OAAO,CAAC;IACjB,CAAC,CAAC,CAAC;IAEH,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,UAAU,CAAC,QAAQ,CAAC,CAAC;IACpD,MAAM,MAAM,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,KAAK,UAAU,CAAC,CAAC;IAE/D,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE;QACrB,OAAO,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QACtB,MAAM,IAAI,KAAK,CAAC,uCAAuC,CAAC,CAAC;KAC1D;IAED,MAAM,eAAe,GAAG,QAAQ;SAC7B,GAAG,CAAC,CAAC,OAAO,EAAE,KAAK,EAAE,EAAE;QACtB,IAAI,OAAO,CAAC,MAAM,KAAK,WAAW,EAAE;YAClC,OAAO,EAAE,YAAY,EAAE,cAAc,CAAC,KAAK,CAAC,EAAE,IAAI,EAAE,OAAO,CAAC,KAAK,EAAE,CAAC;SACrE;IACH,CAAC,CAAC;SACD,MAAM,CAAC,OAAO,CAAC,CAAC;IAEnB,OAAO,eAAe,CAAC;AACzB,CAAC;AAQD,KAAK,UAAU,qCAAqC,CAClD,cAAsB,EACtB,UAAoC,EAAE;IAEtC,MAAM,YAAY,GAAG,eAAe,CAAC,cAAc,CAAC,CAAC;IAErD,MAAM,yBAAyB,GAAG,YAAY,CAAC,kBAAkB,CAAC,OAAO,CAAC;IAE1E,MAAM,cAAc,GAClB,OAAO,CAAC,cAAc,IAAI,uBAAuB,CAAC,cAAc,CAAC,CAAC;IAEpE,MAAM,QAAQ,GAAG,cAAc,CAAC,GAAG,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QAClD,MAAM,OAAO,GAAG,MAAM,uBAAuB,CAC3C,yBAAoD,EACpD,KAAK,CACN,CAAC;QAEF,OAAO,EAAE,YAAY,EAAE,KAAK,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC;IAChD,CAAC,CAAC,CAAC;IAEH,MAAM,QAAQ,GAAG,MAAM,OAAO,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;IAE7C,OAAO,QAAQ,CAAC;AAClB,CAAC;AAED,OAAO,EACL,qCAAqC,EACrC,sCAAsC,GACvC,CAAC"}
|