@cornerstonejs/tools 1.52.0 → 1.54.0

package/dist/cjs/utilities/segmentation/getUniqueSegmentIndices.js

@@ -0,0 +1,59 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getUniqueSegmentIndices = void 0;
+const core_1 = require("@cornerstonejs/core");
+const enums_1 = require("../../enums");
+const segmentationState_1 = require("../../stateManagement/segmentation/segmentationState");
+const stackVolumeCheck_1 = require("../../tools/segmentation/strategies/utils/stackVolumeCheck");
+function getUniqueSegmentIndices(segmentationId) {
+    var _a, _b, _c, _d;
+    const segmentation = (0, segmentationState_1.getSegmentation)(segmentationId);
+    if (segmentation.type === enums_1.SegmentationRepresentations.Labelmap) {
+        const labelmapData = segmentation.representationData[enums_1.SegmentationRepresentations.Labelmap];
+        const keySet = new Set();
+        if ((0, stackVolumeCheck_1.isVolumeSegmentation)(labelmapData)) {
+            const volume = core_1.cache.getVolume(segmentationId);
+            const scalarData = volume.getScalarData();
+            for (let i = 0; i < scalarData.length; i++) {
+                const segmentIndex = scalarData[i];
+                if (segmentIndex !== 0) {
+                    keySet.add(segmentIndex);
+                }
+            }
+        }
+        else {
+            labelmapData.imageIdReferenceMap.forEach((segmentationImageId) => {
+                const image = core_1.cache.getImage(segmentationImageId);
+                const scalarData = image.getPixelData();
+                for (let i = 0; i < scalarData.length; i++) {
+                    const segmentIndex = scalarData[i];
+                    if (segmentIndex !== 0) {
+                        keySet.add(segmentIndex);
+                    }
+                }
+            });
+        }
+        return Array.from(keySet)
+            .map((it) => parseInt(it))
+            .sort();
+    }
+    else if (segmentation.type === enums_1.SegmentationRepresentations.Contour) {
+        const annotationUIDsMap = (_a = segmentation.representationData.CONTOUR) === null || _a === void 0 ? void 0 : _a.annotationUIDsMap;
+        const indices = new Set(annotationUIDsMap.keys());
+        const geometryIds = (_b = segmentation.representationData.CONTOUR) === null || _b === void 0 ? void 0 : _b.geometryIds;
+        if (!geometryIds) {
+            throw new Error(`No geometryIds found for segmentationId ${segmentationId}`);
+        }
+        geometryIds.forEach((geometryId) => {
+            const geometry = core_1.cache.getGeometry(geometryId);
+            indices.add(geometry.data.getSegmentIndex());
+        });
+        return Array.from(indices.values()).sort();
+    }
+    else if (segmentation.type === enums_1.SegmentationRepresentations.Surface) {
+        const geometryIds = (_d = (_c = segmentation.representationData.SURFACE) === null || _c === void 0 ? void 0 : _c.geometryIds) !== null && _d !== void 0 ? _d : [];
+        return Array.from(geometryIds.keys());
+    }
+}
+exports.getUniqueSegmentIndices = getUniqueSegmentIndices;
+//# sourceMappingURL=getUniqueSegmentIndices.js.map

package/dist/cjs/utilities/segmentation/getUniqueSegmentIndices.js.map

@@ -0,0 +1 @@
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package/dist/cjs/utilities/segmentation/index.d.ts

@@ -14,4 +14,8 @@ import contourAndFindLargestBidirectional from './contourAndFindLargestBidirecti
 import createBidirectionalToolData from './createBidirectionalToolData';
 import segmentContourAction from './segmentContourAction';
 import { invalidateBrushCursor } from './invalidateBrushCursor';
-export { thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, rectangleROIThresholdVolumeByRange, triggerSegmentationRender, floodFill, getBrushSizeForToolGroup, setBrushSizeForToolGroup, getBrushThresholdForToolGroup, setBrushThresholdForToolGroup, thresholdSegmentationByRange, createImageIdReferenceMap, contourAndFindLargestBidirectional, createBidirectionalToolData, segmentContourAction, invalidateBrushCursor, };
+import { getUniqueSegmentIndices } from './getUniqueSegmentIndices';
+import { getSegmentAtWorldPoint } from './getSegmentAtWorldPoint';
+import { getSegmentAtLabelmapBorder } from './getSegmentAtLabelmapBorder';
+import { getHoveredContourSegmentationAnnotation } from './getHoveredContourSegmentationAnnotation';
+export { thresholdVolumeByRange, createMergedLabelmapForIndex, isValidRepresentationConfig, getDefaultRepresentationConfig, createLabelmapVolumeForViewport, rectangleROIThresholdVolumeByRange, triggerSegmentationRender, floodFill, getBrushSizeForToolGroup, setBrushSizeForToolGroup, getBrushThresholdForToolGroup, setBrushThresholdForToolGroup, thresholdSegmentationByRange, createImageIdReferenceMap, contourAndFindLargestBidirectional, createBidirectionalToolData, segmentContourAction, invalidateBrushCursor, getUniqueSegmentIndices, getSegmentAtWorldPoint, getSegmentAtLabelmapBorder, getHoveredContourSegmentationAnnotation, };

package/dist/cjs/utilities/segmentation/index.js

@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.invalidateBrushCursor = exports.segmentContourAction = exports.createBidirectionalToolData = exports.contourAndFindLargestBidirectional = exports.createImageIdReferenceMap = exports.thresholdSegmentationByRange = exports.setBrushThresholdForToolGroup = exports.getBrushThresholdForToolGroup = exports.setBrushSizeForToolGroup = exports.getBrushSizeForToolGroup = exports.floodFill = exports.triggerSegmentationRender = exports.rectangleROIThresholdVolumeByRange = exports.createLabelmapVolumeForViewport = exports.getDefaultRepresentationConfig = exports.isValidRepresentationConfig = exports.createMergedLabelmapForIndex = exports.thresholdVolumeByRange = void 0;
+exports.getHoveredContourSegmentationAnnotation = exports.getSegmentAtLabelmapBorder = exports.getSegmentAtWorldPoint = exports.getUniqueSegmentIndices = exports.invalidateBrushCursor = exports.segmentContourAction = exports.createBidirectionalToolData = exports.contourAndFindLargestBidirectional = exports.createImageIdReferenceMap = exports.thresholdSegmentationByRange = exports.setBrushThresholdForToolGroup = exports.getBrushThresholdForToolGroup = exports.setBrushSizeForToolGroup = exports.getBrushSizeForToolGroup = exports.floodFill = exports.triggerSegmentationRender = exports.rectangleROIThresholdVolumeByRange = exports.createLabelmapVolumeForViewport = exports.getDefaultRepresentationConfig = exports.isValidRepresentationConfig = exports.createMergedLabelmapForIndex = exports.thresholdVolumeByRange = void 0;
 const thresholdVolumeByRange_1 = __importDefault(require("./thresholdVolumeByRange"));
 exports.thresholdVolumeByRange = thresholdVolumeByRange_1.default;
 const rectangleROIThresholdVolumeByRange_1 = __importDefault(require("./rectangleROIThresholdVolumeByRange"));
@@ -38,4 +38,12 @@ const segmentContourAction_1 = __importDefault(require("./segmentContourAction")
 exports.segmentContourAction = segmentContourAction_1.default;
 const invalidateBrushCursor_1 = require("./invalidateBrushCursor");
 Object.defineProperty(exports, "invalidateBrushCursor", { enumerable: true, get: function () { return invalidateBrushCursor_1.invalidateBrushCursor; } });
+const getUniqueSegmentIndices_1 = require("./getUniqueSegmentIndices");
+Object.defineProperty(exports, "getUniqueSegmentIndices", { enumerable: true, get: function () { return getUniqueSegmentIndices_1.getUniqueSegmentIndices; } });
+const getSegmentAtWorldPoint_1 = require("./getSegmentAtWorldPoint");
+Object.defineProperty(exports, "getSegmentAtWorldPoint", { enumerable: true, get: function () { return getSegmentAtWorldPoint_1.getSegmentAtWorldPoint; } });
+const getSegmentAtLabelmapBorder_1 = require("./getSegmentAtLabelmapBorder");
+Object.defineProperty(exports, "getSegmentAtLabelmapBorder", { enumerable: true, get: function () { return getSegmentAtLabelmapBorder_1.getSegmentAtLabelmapBorder; } });
+const getHoveredContourSegmentationAnnotation_1 = require("./getHoveredContourSegmentationAnnotation");
+Object.defineProperty(exports, "getHoveredContourSegmentationAnnotation", { enumerable: true, get: function () { return getHoveredContourSegmentationAnnotation_1.getHoveredContourSegmentationAnnotation; } });
 //# sourceMappingURL=index.js.map

package/dist/cjs/utilities/segmentation/index.js.map

@@ -1 +1 @@
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package/dist/cjs/utilities/triggerAnnotationRenderForToolGroupIds.d.ts

@@ -0,0 +1,2 @@
+export declare function triggerAnnotationRenderForToolGroupIds(toolGroupIds: string[]): void;
+export default triggerAnnotationRenderForToolGroupIds;

package/dist/cjs/utilities/triggerAnnotationRenderForToolGroupIds.js

@@ -0,0 +1,32 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.triggerAnnotationRenderForToolGroupIds = void 0;
+const core_1 = require("@cornerstonejs/core");
+const triggerAnnotationRender_1 = __importDefault(require("./triggerAnnotationRender"));
+const ToolGroupManager_1 = require("../store/ToolGroupManager");
+function triggerAnnotationRenderForToolGroupIds(toolGroupIds) {
+    toolGroupIds.forEach((toolGroupId) => {
+        const toolGroup = (0, ToolGroupManager_1.getToolGroup)(toolGroupId);
+        if (!toolGroup) {
+            console.warn(`ToolGroup not available for ${toolGroupId}`);
+            return;
+        }
+        const viewportsInfo = toolGroup.getViewportsInfo();
+        viewportsInfo.forEach((viewportInfo) => {
+            const { renderingEngineId, viewportId } = viewportInfo;
+            const renderingEngine = (0, core_1.getRenderingEngine)(renderingEngineId);
+            if (!renderingEngine) {
+                console.warn(`RenderingEngine not available for ${renderingEngineId}`);
+                return;
+            }
+            const viewport = renderingEngine.getViewport(viewportId);
+            (0, triggerAnnotationRender_1.default)(viewport.element);
+        });
+    });
+}
+exports.triggerAnnotationRenderForToolGroupIds = triggerAnnotationRenderForToolGroupIds;
+exports.default = triggerAnnotationRenderForToolGroupIds;
+//# sourceMappingURL=triggerAnnotationRenderForToolGroupIds.js.map

package/dist/cjs/utilities/triggerAnnotationRenderForToolGroupIds.js.map

@@ -0,0 +1 @@
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package/dist/cjs/workers/clippingPlaneWorker.d.ts

@@ -0,0 +1 @@
+export {};

package/dist/cjs/workers/clippingPlaneWorker.js

@@ -0,0 +1,63 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const comlink_1 = require("comlink");
+const Plane_1 = __importDefault(require("@kitware/vtk.js/Common/DataModel/Plane"));
+const ClipClosedSurface_1 = __importDefault(require("@kitware/vtk.js/Filters/General/ClipClosedSurface"));
+const PolyData_1 = __importDefault(require("@kitware/vtk.js/Common/DataModel/PolyData"));
+const obj = {
+    clipSurfaceWithPlanes({ planesInfo, pointsAndPolys }, progressCallback, updateCacheCallback) {
+        const numberOfPlanes = planesInfo.length;
+        const clippingFilter = ClipClosedSurface_1.default.newInstance({
+            clippingPlanes: [],
+            activePlaneId: 2,
+            passPointData: false,
+        });
+        clippingFilter.setGenerateOutline(true);
+        clippingFilter.setGenerateFaces(false);
+        const plane1 = Plane_1.default.newInstance();
+        const plane2 = Plane_1.default.newInstance();
+        try {
+            for (const [index, planeInfo] of planesInfo.entries()) {
+                const { sliceIndex, planes } = planeInfo;
+                const polyDataResults = new Map();
+                for (const polyDataInfo of pointsAndPolys) {
+                    const { points, polys, id } = polyDataInfo;
+                    const surfacePolyData = PolyData_1.default.newInstance();
+                    surfacePolyData.getPoints().setData(points, 3);
+                    surfacePolyData.getPolys().setData(polys, 3);
+                    clippingFilter.setInputData(surfacePolyData);
+                    const clippingPlanes = [plane1, plane2];
+                    plane1.setOrigin(planes[0].origin);
+                    plane1.setNormal(planes[0].normal);
+                    plane2.setOrigin(planes[1].origin);
+                    plane2.setNormal(planes[1].normal);
+                    clippingFilter.setClippingPlanes(clippingPlanes);
+                    clippingFilter.update();
+                    const polyData = clippingFilter.getOutputData();
+                    if (polyData) {
+                        polyDataResults.set(id, {
+                            points: polyData.getPoints().getData(),
+                            lines: polyData.getLines().getData(),
+                        });
+                    }
+                }
+                progressCallback({ progress: (index + 1) / numberOfPlanes });
+                updateCacheCallback({ sliceIndex, polyDataResults });
+            }
+        }
+        catch (e) {
+            console.error('Error during processing', e);
+        }
+        finally {
+            pointsAndPolys = null;
+            clippingFilter.delete();
+            plane1.delete();
+            plane2.delete();
+        }
+    },
+};
+(0, comlink_1.expose)(obj);
+//# sourceMappingURL=clippingPlaneWorker.js.map

package/dist/cjs/workers/clippingPlaneWorker.js.map

@@ -0,0 +1 @@
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package/dist/cjs/workers/polySegConverters.d.ts

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+export {};

package/dist/cjs/workers/polySegConverters.js

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+"use strict";
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const comlink_1 = require("comlink");
+const ImageData_1 = __importDefault(require("@kitware/vtk.js/Common/DataModel/ImageData"));
+const DataArray_1 = __importDefault(require("@kitware/vtk.js/Common/Core/DataArray"));
+const polyseg_wasm_1 = __importDefault(require("@icr/polyseg-wasm"));
+const core_1 = require("@cornerstonejs/core");
+const boundingBox_1 = require("../utilities/boundingBox");
+const utilities_1 = require("../utilities");
+const polyline_1 = require("../utilities/math/polyline");
+const polySegConverters = {
+    polySeg: null,
+    polySegInitializing: false,
+    polySegInitializingPromise: null,
+    initializePolySeg(progressCallback) {
+        var _a;
+        return __awaiter(this, void 0, void 0, function* () {
+            if (this.polySegInitializing) {
+                yield this.polySegInitializingPromise;
+                return;
+            }
+            if ((_a = this.polySeg) === null || _a === void 0 ? void 0 : _a.instance) {
+                return;
+            }
+            this.polySegInitializing = true;
+            this.polySegInitializingPromise = new Promise((resolve) => {
+                this.polySeg = new polyseg_wasm_1.default();
+                this.polySeg
+                    .initialize({
+                    updateProgress: progressCallback,
+                })
+                    .then(() => {
+                    this.polySegInitializing = false;
+                    resolve();
+                });
+            });
+            yield this.polySegInitializingPromise;
+        });
+    },
+    convertContourToSurface(args, ...callbacks) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const { polylines, numPointsArray } = args;
+            const [progressCallback] = callbacks;
+            yield this.initializePolySeg(progressCallback);
+            const results = yield this.polySeg.instance.convertContourRoiToSurface(polylines, numPointsArray);
+            return results;
+        });
+    },
+    convertLabelmapToSurface(args, ...callbacks) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const [progressCallback] = callbacks;
+            yield this.initializePolySeg(progressCallback);
+            const results = this.polySeg.instance.convertLabelmapToSurface(args.scalarData, args.dimensions, args.spacing, args.direction, args.origin, [args.segmentIndex]);
+            return results;
+        });
+    },
+    convertContourToVolumeLabelmap(args, ...callbacks) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const [progressCallback] = callbacks;
+            const polySeg = yield new polyseg_wasm_1.default();
+            yield polySeg.initialize({
+                updateProgress: progressCallback,
+            });
+            const { segmentIndices, scalarData, annotationUIDsInSegmentMap, dimensions, origin, direction, spacing, } = args;
+            const segmentationVoxelManager = core_1.utilities.VoxelManager.createVolumeVoxelManager(dimensions, scalarData);
+            const imageData = ImageData_1.default.newInstance();
+            imageData.setDimensions(dimensions);
+            imageData.setOrigin(origin);
+            imageData.setDirection(direction);
+            imageData.setSpacing(spacing);
+            const scalarArray = DataArray_1.default.newInstance({
+                name: 'Pixels',
+                numberOfComponents: 1,
+                values: scalarData,
+            });
+            imageData.getPointData().setScalars(scalarArray);
+            imageData.modified();
+            for (const index of segmentIndices) {
+                const annotations = annotationUIDsInSegmentMap.get(index);
+                for (const annotation of annotations) {
+                    const bounds = (0, boundingBox_1.getBoundingBoxAroundShapeWorld)(annotation.data.contour.polyline);
+                    const [iMin, jMin, kMin] = core_1.utilities.transformWorldToIndex(imageData, [
+                        bounds[0][0],
+                        bounds[1][0],
+                        bounds[2][0],
+                    ]);
+                    const [iMax, jMax, kMax] = core_1.utilities.transformWorldToIndex(imageData, [
+                        bounds[0][1],
+                        bounds[1][1],
+                        bounds[2][1],
+                    ]);
+                    (0, utilities_1.pointInShapeCallback)(imageData, (pointLPS) => {
+                        return (0, polyline_1.isPointInsidePolyline3D)(pointLPS, annotation.data.contour.polyline);
+                    }, ({ pointIJK }) => {
+                        segmentationVoxelManager.setAtIJKPoint(pointIJK, index);
+                    }, [
+                        [iMin, iMax],
+                        [jMin, jMax],
+                        [kMin, kMax],
+                    ]);
+                }
+            }
+            return segmentationVoxelManager.scalarData;
+        });
+    },
+    convertContourToStackLabelmap(args, ...callbacks) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const [progressCallback] = callbacks;
+            const polySeg = yield new polyseg_wasm_1.default();
+            yield polySeg.initialize({
+                updateProgress: progressCallback,
+            });
+            const { segmentationsInfo, annotationUIDsInSegmentMap, segmentIndices } = args;
+            const segmentationVoxelManagers = new Map();
+            segmentationsInfo.forEach((segmentationInfo, referencedImageId) => {
+                const { dimensions, scalarData, direction, spacing, origin } = segmentationInfo;
+                const manager = core_1.utilities.VoxelManager.createVolumeVoxelManager(dimensions, scalarData);
+                const imageData = ImageData_1.default.newInstance();
+                imageData.setDimensions(dimensions);
+                imageData.setOrigin(origin);
+                imageData.setDirection(direction);
+                imageData.setSpacing(spacing);
+                const scalarArray = DataArray_1.default.newInstance({
+                    name: 'Pixels',
+                    numberOfComponents: 1,
+                    values: scalarData,
+                });
+                imageData.getPointData().setScalars(scalarArray);
+                imageData.modified();
+                segmentationVoxelManagers.set(referencedImageId, { manager, imageData });
+            });
+            for (const index of segmentIndices) {
+                const annotations = annotationUIDsInSegmentMap.get(index);
+                for (const annotation of annotations) {
+                    if (!(annotation === null || annotation === void 0 ? void 0 : annotation.data)) {
+                        continue;
+                    }
+                    const bounds = (0, boundingBox_1.getBoundingBoxAroundShapeWorld)(annotation.data.contour.polyline);
+                    const { referencedImageId } = annotation.metadata;
+                    const { manager: segmentationVoxelManager, imageData } = segmentationVoxelManagers.get(referencedImageId);
+                    const [iMin, jMin, kMin] = core_1.utilities.transformWorldToIndex(imageData, [
+                        bounds[0][0],
+                        bounds[1][0],
+                        bounds[2][0],
+                    ]);
+                    const [iMax, jMax, kMax] = core_1.utilities.transformWorldToIndex(imageData, [
+                        bounds[0][1],
+                        bounds[1][1],
+                        bounds[2][1],
+                    ]);
+                    (0, utilities_1.pointInShapeCallback)(imageData, (pointLPS) => {
+                        return (0, polyline_1.isPointInsidePolyline3D)(pointLPS, annotation.data.contour.polyline);
+                    }, ({ pointIJK }) => {
+                        segmentationVoxelManager.setAtIJKPoint(pointIJK, index);
+                    }, [
+                        [iMin, iMax],
+                        [jMin, jMax],
+                        [kMin, kMax],
+                    ]);
+                }
+            }
+            segmentationsInfo.forEach((segmentationInfo, referencedImageId) => {
+                const { manager: segmentationVoxelManager } = segmentationVoxelManagers.get(referencedImageId);
+                segmentationInfo.scalarData = segmentationVoxelManager.scalarData;
+            });
+            return segmentationsInfo;
+        });
+    },
+    convertSurfaceToVolumeLabelmap(args, ...callbacks) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const [progressCallback] = callbacks;
+            yield this.initializePolySeg(progressCallback);
+            const results = this.polySeg.instance.convertSurfaceToLabelmap(args.points, args.polys, args.dimensions, args.spacing, args.direction, args.origin);
+            return results;
+        });
+    },
+    convertSurfacesToVolumeLabelmap(args, ...callbacks) {
+        return __awaiter(this, void 0, void 0, function* () {
+            const [progressCallback] = callbacks;
+            yield this.initializePolySeg(progressCallback);
+            const { segmentsInfo } = args;
+            const promises = Array.from(segmentsInfo.keys()).map((segmentIndex) => {
+                const { points, polys } = segmentsInfo.get(segmentIndex);
+                const result = this.polySeg.instance.convertSurfaceToLabelmap(points, polys, args.dimensions, args.spacing, args.direction, args.origin);
+                return Object.assign(Object.assign({}, result), { segmentIndex });
+            });
+            const results = yield Promise.all(promises);
+            const targetImageData = ImageData_1.default.newInstance();
+            targetImageData.setDimensions(args.dimensions);
+            targetImageData.setOrigin(args.origin);
+            targetImageData.setSpacing(args.spacing);
+            targetImageData.setDirection(args.direction);
+            const totalSize = args.dimensions[0] * args.dimensions[1] * args.dimensions[2];
+            const scalarArray = DataArray_1.default.newInstance({
+                name: 'Pixels',
+                numberOfComponents: 1,
+                values: new Uint8Array(totalSize),
+            });
+            targetImageData.getPointData().setScalars(scalarArray);
+            targetImageData.modified();
+            const segmentationVoxelManager = core_1.utilities.VoxelManager.createVolumeVoxelManager(args.dimensions, targetImageData.getPointData().getScalars().getData());
+            const outputVolumesInfo = results.map((result) => {
+                const { data, dimensions, direction, origin, spacing } = result;
+                const volume = ImageData_1.default.newInstance();
+                volume.setDimensions(dimensions);
+                volume.setOrigin(origin);
+                volume.setSpacing(spacing);
+                volume.setDirection(direction);
+                const scalarArray = DataArray_1.default.newInstance({
+                    name: 'Pixels',
+                    numberOfComponents: 1,
+                    values: data,
+                });
+                volume.getPointData().setScalars(scalarArray);
+                volume.modified();
+                const voxelManager = core_1.utilities.VoxelManager.createVolumeVoxelManager(dimensions, data);
+                const extent = volume.getExtent();
+                return {
+                    volume,
+                    voxelManager,
+                    extent,
+                    scalarData: data,
+                    segmentIndex: result.segmentIndex,
+                };
+            });
+            (0, utilities_1.pointInShapeCallback)(targetImageData, () => true, ({ pointIJK, pointLPS }) => {
+                try {
+                    for (const volumeInfo of outputVolumesInfo) {
+                        const { volume, extent, voxelManager, segmentIndex } = volumeInfo;
+                        const index = volume.worldToIndex(pointLPS);
+                        if (index[0] < extent[0] ||
+                            index[0] > extent[1] ||
+                            index[1] < extent[2] ||
+                            index[1] > extent[3] ||
+                            index[2] < extent[4] ||
+                            index[2] > extent[5]) {
+                            continue;
+                        }
+                        const roundedIndex = index.map(Math.round);
+                        const value = voxelManager.getAtIJK(...roundedIndex);
+                        if (value > 0) {
+                            segmentationVoxelManager.setAtIJKPoint(pointIJK, segmentIndex);
+                            break;
+                        }
+                    }
+                }
+                catch (error) {
+                }
+            });
+            return segmentationVoxelManager.scalarData;
+        });
+    },
+};
+(0, comlink_1.expose)(polySegConverters);
+//# sourceMappingURL=polySegConverters.js.map

package/dist/cjs/workers/polySegConverters.js.map

@@ -0,0 +1 @@
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package/dist/esm/drawingSvg/drawPath.js

@@ -0,0 +1,49 @@
+import _getHash from './_getHash';
+import setNewAttributesIfValid from './setNewAttributesIfValid';
+import setAttributesIfNecessary from './setAttributesIfNecessary';
+export default function drawPath(svgDrawingHelper, annotationUID, pathUID, points, options) {
+    const hasSubArrays = points.length && points[0].length && Array.isArray(points[0][0]);
+    const pointsArrays = hasSubArrays ? points : [points];
+    const { color = 'dodgerblue', width = 10, fillColor = 'none', fillOpacity = 0, lineWidth, lineDash, closePath = false, } = options;
+    const strokeWidth = lineWidth || width;
+    const svgns = 'http://www.w3.org/2000/svg';
+    const svgNodeHash = _getHash(annotationUID, 'path', pathUID);
+    const existingNode = svgDrawingHelper.getSvgNode(svgNodeHash);
+    let pointsAttribute = '';
+    for (let i = 0, numArrays = pointsArrays.length; i < numArrays; i++) {
+        const points = pointsArrays[i];
+        const numPoints = points.length;
+        if (numPoints < 2) {
+            continue;
+        }
+        for (let j = 0; j < numPoints; j++) {
+            const point = points[j];
+            const cmd = j ? 'L' : 'M';
+            pointsAttribute += `${cmd} ${point[0]},${point[1]} `;
+        }
+        if (closePath) {
+            pointsAttribute += 'Z ';
+        }
+    }
+    if (!pointsAttribute) {
+        return;
+    }
+    const attributes = {
+        d: pointsAttribute,
+        stroke: color,
+        fill: fillColor,
+        'fill-opacity': fillOpacity,
+        'stroke-width': strokeWidth,
+        'stroke-dasharray': lineDash,
+    };
+    if (existingNode) {
+        setAttributesIfNecessary(attributes, existingNode);
+        svgDrawingHelper.setNodeTouched(svgNodeHash);
+    }
+    else {
+        const newNode = document.createElementNS(svgns, 'path');
+        setNewAttributesIfValid(attributes, newNode);
+        svgDrawingHelper.appendNode(newNode, svgNodeHash);
+    }
+}
+//# sourceMappingURL=drawPath.js.map

package/dist/esm/drawingSvg/drawPath.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"drawPath.js","sourceRoot":"","sources":["../../../src/drawingSvg/drawPath.ts"],"names":[],"mappings":"AACA,OAAO,QAAQ,MAAM,YAAY,CAAC;AAClC,OAAO,uBAAuB,MAAM,2BAA2B,CAAC;AAChE,OAAO,wBAAwB,MAAM,4BAA4B,CAAC;AASlE,MAAM,CAAC,OAAO,UAAU,QAAQ,CAC9B,gBAAkC,EAClC,aAAqB,EACrB,OAAe,EACf,MAAyC,EACzC,OAQC;IAID,MAAM,YAAY,GAChB,MAAM,CAAC,MAAM,IAAI,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,IAAI,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAEnE,MAAM,YAAY,GAAG,YAAY,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC;IACtD,MAAM,EACJ,KAAK,GAAG,YAAY,EACpB,KAAK,GAAG,EAAE,EACV,SAAS,GAAG,MAAM,EAClB,WAAW,GAAG,CAAC,EACf,SAAS,EACT,QAAQ,EACR,SAAS,GAAG,KAAK,GAClB,GAAG,OAAO,CAAC;IAGZ,MAAM,WAAW,GAAG,SAAS,IAAI,KAAK,CAAC;IAEvC,MAAM,KAAK,GAAG,4BAA4B,CAAC;IAC3C,MAAM,WAAW,GAAG,QAAQ,CAAC,aAAa,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC;IAC7D,MAAM,YAAY,GAAG,gBAAgB,CAAC,UAAU,CAAC,WAAW,CAAC,CAAC;IAC9D,IAAI,eAAe,GAAG,EAAE,CAAC;IAEzB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,SAAS,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE;QACnE,MAAM,MAAM,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC;QAC/B,MAAM,SAAS,GAAG,MAAM,CAAC,MAAM,CAAC;QAEhC,IAAI,SAAS,GAAG,CAAC,EAAE;YACjB,SAAS;SACV;QAED,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE;YAClC,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;YACxB,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC;YAE1B,eAAe,IAAI,GAAG,GAAG,IAAI,KAAK,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC;SACtD;QAED,IAAI,SAAS,EAAE;YACb,eAAe,IAAI,IAAI,CAAC;SACzB;KACF;IAED,IAAI,CAAC,eAAe,EAAE;QACpB,OAAO;KACR;IAED,MAAM,UAAU,GAAG;QACjB,CAAC,EAAE,eAAe;QAClB,MAAM,EAAE,KAAK;QACb,IAAI,EAAE,SAAS;QACf,cAAc,EAAE,WAAW;QAC3B,cAAc,EAAE,WAAW;QAC3B,kBAAkB,EAAE,QAAQ;KAC7B,CAAC;IAEF,IAAI,YAAY,EAAE;QAEhB,wBAAwB,CAAC,UAAU,EAAE,YAAY,CAAC,CAAC;QAEnD,gBAAgB,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC;KAC9C;SAAM;QACL,MAAM,OAAO,GAAG,QAAQ,CAAC,eAAe,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;QAExD,uBAAuB,CAAC,UAAU,EAAE,OAAO,CAAC,CAAC;QAC7C,gBAAgB,CAAC,UAAU,CAAC,OAAO,EAAE,WAAW,CAAC,CAAC;KACnD;AACH,CAAC"}

package/dist/esm/drawingSvg/drawPolyline.js

@@ -5,15 +5,7 @@ export default function drawPolyline(svgDrawingHelper, annotationUID, polylineUI
     if (points.length < 2) {
         return;
     }
-    const { fillColor, fillOpacity, color, width, lineWidth, lineDash } = Object.assign({
-        color: 'dodgerblue',
-        width: '2',
-        fillColor: 'none',
-        fillOpacity: 0,
-        lineWidth: undefined,
-        lineDash: undefined,
-        connectLastToFirst: false,
-    }, options);
+    const { color = 'dodgerblue', width = 10, fillColor = 'none', fillOpacity = 0, lineWidth, lineDash, closePath = false, } = options;
     const strokeWidth = lineWidth || width;
     const svgns = 'http://www.w3.org/2000/svg';
     const svgNodeHash = _getHash(annotationUID, 'polyline', polylineUID);
@@ -22,7 +14,7 @@ export default function drawPolyline(svgDrawingHelper, annotationUID, polylineUI
     for (const point of points) {
         pointsAttribute += `${point[0].toFixed(1)}, ${point[1].toFixed(1)} `;
     }
-    if (options.connectLastToFirst) {
+    if (closePath) {
         const firstPoint = points[0];
         pointsAttribute += `${firstPoint[0]}, ${firstPoint[1]}`;
     }

package/dist/esm/drawingSvg/drawPolyline.js.map

@@ -1 +1 @@
-{"version":3,"file":"drawPolyline.js","sourceRoot":"","sources":["../../../src/drawingSvg/drawPolyline.ts"],"names":[],"mappings":"AACA,OAAO,QAAQ,MAAM,YAAY,CAAC;AAClC,OAAO,uBAAuB,MAAM,2BAA2B,CAAC;AAChE,OAAO,wBAAwB,MAAM,4BAA4B,CAAC;AASlE,MAAM,CAAC,OAAO,UAAU,YAAY,CAClC,gBAAkC,EAClC,aAAqB,EACrB,WAAmB,EACnB,MAAsB,EACtB,OAQC;IAED,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE;QACrB,OAAO;KACR;IAED,MAAM,EAAE,SAAS,EAAE,WAAW,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,QAAQ,EAAE,GACjE,MAAM,CAAC,MAAM,CACX;QACE,KAAK,EAAE,YAAY;QACnB,KAAK,EAAE,GAAG;QACV,SAAS,EAAE,MAAM;QACjB,WAAW,EAAE,CAAC;QACd,SAAS,EAAE,SAAS;QACpB,QAAQ,EAAE,SAAS;QACnB,kBAAkB,EAAE,KAAK;KAC1B,EACD,OAAO,CACR,CAAC;IAGJ,MAAM,WAAW,GAAG,SAAS,IAAI,KAAK,CAAC;IAEvC,MAAM,KAAK,GAAG,4BAA4B,CAAC;IAC3C,MAAM,WAAW,GAAG,QAAQ,CAAC,aAAa,EAAE,UAAU,EAAE,WAAW,CAAC,CAAC;IACrE,MAAM,gBAAgB,GAAG,gBAAgB,CAAC,UAAU,CAAC,WAAW,CAAC,CAAC;IAElE,IAAI,eAAe,GAAG,EAAE,CAAC;IAEzB,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE;QAC1B,eAAe,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC;KACtE;IAED,IAAI,OAAO,CAAC,kBAAkB,EAAE;QAC9B,MAAM,UAAU,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;QAE7B,eAAe,IAAI,GAAG,UAAU,CAAC,CAAC,CAAC,KAAK,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;KACzD;IAED,MAAM,UAAU,GAAG;QACjB,MAAM,EAAE,eAAe;QACvB,MAAM,EAAE,KAAK;QACb,IAAI,EAAE,SAAS;QACf,cAAc,EAAE,WAAW;QAC3B,cAAc,EAAE,WAAW;QAC3B,kBAAkB,EAAE,QAAQ;KAC7B,CAAC;IAEF,IAAI,gBAAgB,EAAE;QAEpB,wBAAwB,CAAC,UAAU,EAAE,gBAAgB,CAAC,CAAC;QAEvD,gBAAgB,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC;KAC9C;SAAM;QACL,MAAM,WAAW,GAAG,QAAQ,CAAC,eAAe,CAAC,KAAK,EAAE,UAAU,CAAC,CAAC;QAEhE,uBAAuB,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;QAEjD,gBAAgB,CAAC,UAAU,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;KACvD;AACH,CAAC"}
+{"version":3,"file":"drawPolyline.js","sourceRoot":"","sources":["../../../src/drawingSvg/drawPolyline.ts"],"names":[],"mappings":"AACA,OAAO,QAAQ,MAAM,YAAY,CAAC;AAClC,OAAO,uBAAuB,MAAM,2BAA2B,CAAC;AAChE,OAAO,wBAAwB,MAAM,4BAA4B,CAAC;AASlE,MAAM,CAAC,OAAO,UAAU,YAAY,CAClC,gBAAkC,EAClC,aAAqB,EACrB,WAAmB,EACnB,MAAsB,EACtB,OAQC;IAED,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE;QACrB,OAAO;KACR;IAED,MAAM,EACJ,KAAK,GAAG,YAAY,EACpB,KAAK,GAAG,EAAE,EACV,SAAS,GAAG,MAAM,EAClB,WAAW,GAAG,CAAC,EACf,SAAS,EACT,QAAQ,EACR,SAAS,GAAG,KAAK,GAClB,GAAG,OAAO,CAAC;IAGZ,MAAM,WAAW,GAAG,SAAS,IAAI,KAAK,CAAC;IAEvC,MAAM,KAAK,GAAG,4BAA4B,CAAC;IAC3C,MAAM,WAAW,GAAG,QAAQ,CAAC,aAAa,EAAE,UAAU,EAAE,WAAW,CAAC,CAAC;IACrE,MAAM,gBAAgB,GAAG,gBAAgB,CAAC,UAAU,CAAC,WAAW,CAAC,CAAC;IAElE,IAAI,eAAe,GAAG,EAAE,CAAC;IAEzB,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE;QAC1B,eAAe,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC;KACtE;IAED,IAAI,SAAS,EAAE;QACb,MAAM,UAAU,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;QAE7B,eAAe,IAAI,GAAG,UAAU,CAAC,CAAC,CAAC,KAAK,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;KACzD;IAED,MAAM,UAAU,GAAG;QACjB,MAAM,EAAE,eAAe;QACvB,MAAM,EAAE,KAAK;QACb,IAAI,EAAE,SAAS;QACf,cAAc,EAAE,WAAW;QAC3B,cAAc,EAAE,WAAW;QAC3B,kBAAkB,EAAE,QAAQ;KAC7B,CAAC;IAEF,IAAI,gBAAgB,EAAE;QAEpB,wBAAwB,CAAC,UAAU,EAAE,gBAAgB,CAAC,CAAC;QAEvD,gBAAgB,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC;KAC9C;SAAM;QACL,MAAM,WAAW,GAAG,QAAQ,CAAC,eAAe,CAAC,KAAK,EAAE,UAAU,CAAC,CAAC;QAEhE,uBAAuB,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;QAEjD,gBAAgB,CAAC,UAAU,CAAC,WAAW,EAAE,WAAW,CAAC,CAAC;KACvD;AACH,CAAC"}

package/dist/esm/drawingSvg/index.js

@@ -6,6 +6,7 @@ import drawHandles from './drawHandles';
 import drawHandle from './drawHandle';
 import drawLine from './drawLine';
 import drawPolyline from './drawPolyline';
+import drawPath from './drawPath';
 import drawLinkedTextBox from './drawLinkedTextBox';
 import drawRect from './drawRect';
 import drawTextBox from './drawTextBox';
@@ -13,5 +14,5 @@ import drawArrow from './drawArrow';
 import drawRedactionRect from './drawRedactionRect';
 import setAttributesIfNecessary from './setAttributesIfNecessary';
 import setNewAttributesIfValid from './setNewAttributesIfValid';
-export { draw, drawCircle, drawEllipse, drawEllipseByCoordinates, drawHandles, drawHandle, drawLine, drawPolyline, drawLinkedTextBox, drawRect, drawTextBox, drawArrow, drawRedactionRect, setAttributesIfNecessary, setNewAttributesIfValid, };
+export { draw, drawCircle, drawEllipse, drawEllipseByCoordinates, drawHandles, drawHandle, drawLine, drawPolyline, drawPath, drawLinkedTextBox, drawRect, drawTextBox, drawArrow, drawRedactionRect, setAttributesIfNecessary, setNewAttributesIfValid, };
 //# sourceMappingURL=index.js.map