@codeyam/codeyam-cli 0.1.0-staging.b8a55ba → 0.1.0-staging.bd4126b

package/codeyam-cli/src/utils/wipe.js

@@ -0,0 +1,128 @@
+import { getDatabase, updateProjectMetadata } from "../../../packages/database/index.js";
+/**
+ * Get counts of what would be deleted by a wipe operation.
+ * Used to show confirmation prompt before wipe.
+ */
+export async function getWipeStats(projectId) {
+    const db = getDatabase();
+    const [analyses, scenarios, entities, commits, files] = await Promise.all([
+        db
+            .selectFrom('analyses')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+        db
+            .selectFrom('scenarios')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+        db
+            .selectFrom('entities')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+        db
+            .selectFrom('commits')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+        db
+            .selectFrom('files')
+            .select(db.fn.countAll().as('count'))
+            .where('project_id', '=', projectId)
+            .executeTakeFirst(),
+    ]);
+    return {
+        analyses: Number(analyses?.count ?? 0),
+        scenarios: Number(scenarios?.count ?? 0),
+        entities: Number(entities?.count ?? 0),
+        commits: Number(commits?.count ?? 0),
+        files: Number(files?.count ?? 0),
+    };
+}
+/**
+ * Check if a project has any existing analyses.
+ * Used by baseline command to determine if wipe is needed.
+ */
+export async function hasExistingAnalyses(projectId) {
+    const db = getDatabase();
+    const result = await db
+        .selectFrom('analyses')
+        .select(db.fn.countAll().as('count'))
+        .where('project_id', '=', projectId)
+        .executeTakeFirst();
+    return Number(result?.count ?? 0) > 0;
+}
+/**
+ * Wipe all analysis data for a project.
+ *
+ * Deletes in order to respect foreign key constraints:
+ * 1. Analyses (scenarios cascade via FK)
+ * 2. Entities
+ * 3. Commits (but keeps _local branch structure)
+ * 4. Files
+ *
+ * Also resets project metadata (baselineCompleted, baselineStatus, baselineSha).
+ */
+export async function wipeProject(projectId) {
+    const db = getDatabase();
+    // Get counts before deletion for return value
+    const stats = await getWipeStats(projectId);
+    console.log('[wipe] Starting wipe for project', projectId);
+    // Delete in order respecting FK cascades
+    // 1. Analyses (scenarios will cascade automatically via FK)
+    console.log('[wipe] Deleting analyses...');
+    await db.deleteFrom('analyses').where('project_id', '=', projectId).execute();
+    // 2. Entities
+    console.log('[wipe] Deleting entities...');
+    await db.deleteFrom('entities').where('project_id', '=', projectId).execute();
+    // 3. Commits (keep _local branch structure, just delete commits)
+    console.log('[wipe] Deleting commits...');
+    await db.deleteFrom('commits').where('project_id', '=', projectId).execute();
+    // 4. Files
+    console.log('[wipe] Deleting files...');
+    await db.deleteFrom('files').where('project_id', '=', projectId).execute();
+    // Reset project metadata
+    console.log('[wipe] Resetting project metadata...');
+    await updateProjectMetadata({
+        projectId,
+        updateCallback: (metadata) => {
+            delete metadata.baselineCompleted;
+            delete metadata.baselineSha;
+        },
+    });
+    console.log('[wipe] Wipe completed');
+    return stats;
+}
+/**
+ * Format wipe stats for display.
+ */
+export function formatWipeStats(stats) {
+    const lines = [];
+    if (stats.entities > 0) {
+        lines.push(`  • ${stats.entities.toLocaleString()} entities`);
+    }
+    if (stats.analyses > 0) {
+        lines.push(`  • ${stats.analyses.toLocaleString()} analyses`);
+    }
+    if (stats.scenarios > 0) {
+        lines.push(`  • ${stats.scenarios.toLocaleString()} scenarios`);
+    }
+    if (stats.commits > 0) {
+        lines.push(`  • ${stats.commits.toLocaleString()} commits`);
+    }
+    if (stats.files > 0) {
+        lines.push(`  • ${stats.files.toLocaleString()} files`);
+    }
+    return lines.join('\n');
+}
+/**
+ * Check if wipe stats indicate there's something to delete.
+ */
+export function hasDataToWipe(stats) {
+    return (stats.analyses > 0 ||
+        stats.entities > 0 ||
+        stats.commits > 0 ||
+        stats.files > 0);
+}
+//# sourceMappingURL=wipe.js.map

package/codeyam-cli/src/utils/wipe.js.map

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package/codeyam-cli/src/webserver/__tests__/dependency-smoke.test.js

@@ -0,0 +1,66 @@
+/**
+ * General smoke test to catch dependency incompatibilities that would crash
+ * the server at startup. Auto-discovers all runtime dependencies from the
+ * webserver's package.json and verifies each can be loaded without errors.
+ *
+ * ESM-only packages (like react-markdown) are expected to fail require() —
+ * the server loads them via import(). But if a CJS package internally tries
+ * to require() an ESM-only transitive dep, that's a real conflict this test
+ * catches (e.g. react-syntax-highlighter v15→v16 broke because refractor v5
+ * became ESM-only).
+ */
+import * as fs from 'fs';
+import * as path from 'path';
+const webserverPkg = JSON.parse(fs.readFileSync(path.join(__dirname, '..', 'package.json'), 'utf8'));
+const deps = Object.keys(webserverPkg.dependencies || {}).filter((dep) => !dep.startsWith('@types/'));
+/**
+ * Check if a package declares "type": "module" in its package.json.
+ * These packages are ESM-only and expected to fail require().
+ */
+function isPackageEsmOnly(dep) {
+    let resolved;
+    try {
+        resolved = require.resolve(dep);
+    }
+    catch {
+        // Can't even resolve → likely ESM-only without a CJS entry
+        return true;
+    }
+    try {
+        // Walk up from the resolved entry point to find the package's package.json
+        let dir = path.dirname(resolved);
+        for (let i = 0; i < 5; i++) {
+            const pkgPath = path.join(dir, 'package.json');
+            if (fs.existsSync(pkgPath)) {
+                const pkg = JSON.parse(fs.readFileSync(pkgPath, 'utf8'));
+                return pkg.type === 'module';
+            }
+            dir = path.dirname(dir);
+        }
+    }
+    catch { }
+    return false;
+}
+describe('server dependency smoke tests', () => {
+    it.each(deps)('%s loads without CJS/ESM conflicts', (dep) => {
+        try {
+            require(dep);
+        }
+        catch (e) {
+            // If the package itself is ESM-only ("type": "module"), require() is
+            // expected to fail. The server loads these via import() and they work fine.
+            if (isPackageEsmOnly(dep)) {
+                return;
+            }
+            // For CJS packages, ANY error is a real problem — including internal
+            // CJS→ESM conflicts where a CJS dep tries to require() an ESM-only
+            // transitive dependency (exactly the react-syntax-highlighter v16 bug).
+            throw e;
+        }
+    });
+    // Sub-path imports that the server actually uses at runtime
+    it('react-syntax-highlighter CJS prism styles load', () => {
+        expect(() => require('react-syntax-highlighter/dist/cjs/styles/prism')).not.toThrow();
+    });
+});
+//# sourceMappingURL=dependency-smoke.test.js.map

package/codeyam-cli/src/webserver/__tests__/dependency-smoke.test.js.map

@@ -0,0 +1 @@
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package/codeyam-cli/src/webserver/app/lib/database.js

@@ -1,5 +1,6 @@
 import { loadCommits, loadEntities, loadAnalyses, loadEntity, updateProjectMetadata, } from "../../../../../packages/database/index.js";
 import { initializeEnvironment, requireBranchAndProject, } from "../../../utils/database.js";
+export { requireBranchAndProject };
 import { getProjectRoot } from "../../../state.js";
 import path from 'path';
 import fs from 'fs/promises';
@@ -14,9 +15,9 @@ export async function getProjectRuns(projectId, branchId, limit = 50) {
 }
 export async function getAllEntities() {
     await initializeEnvironment();
-    const allEntities = await loadEntities({});
+    const allEntities = await loadEntities({ excludeMetadata: true });
     if (!allEntities || allEntities.length === 0) {
-        return allEntities;
+        return [];
     }
     // Filter out superseded entities - only return current versions
     const entities = allEntities.filter((e) => !e.metadata?.isSuperseded);
@@ -29,6 +30,7 @@ export async function getAllEntities() {
     const allShas = [...new Set([...entityShas, ...previousVersionShas])];
     const analyses = await loadAnalyses({
         entityShas: allShas,
+        excludeMetadata: true,
     });
     // Create a map of entity SHA to analyses
     const analysisMap = new Map();
@@ -42,7 +44,7 @@ export async function getAllEntities() {
     }
     // Attach analyses to entities
     // If entity has no analyses but has previousVersionWithAnalyses, inherit from that version
-    return entities.map((entity) => {
+    const result = entities.map((entity) => {
         const directAnalyses = analysisMap.get(entity.sha) || [];
         if (directAnalyses.length > 0) {
             return {
@@ -64,6 +66,7 @@ export async function getAllEntities() {
             analyses: [],
         };
     });
+    return result;
 }
 /**
  * Load current (non-superseded) entities matching the given criteria.
@@ -111,27 +114,19 @@ export async function getAnalysesForEntity(entitySha, includeEntity) {
 /**
  * Get the latest analysis for an entity, looking across all versions of that entity.
  * This handles the case where an entity has changed since its last analysis -
- * we still want to show the previous analysis results (marked as out of date).
+ * we still want to show the most recent analysis results (which may be from a different version).
  *
- * First tries exact sha match, then falls back to querying by entity name.
+ * Queries by entity name to find all analyses across versions, then returns the most recent.
  */
 export async function getLatestAnalysisForEntity(entity) {
     await initializeEnvironment();
-    // First try exact sha match
-    const exactMatch = await loadAnalyses({
-        entityShas: [entity.sha],
-        limit: 1,
-    });
-    if (exactMatch && exactMatch.length > 0) {
-        return exactMatch[0];
-    }
-    // Fall back to querying by entity name to find analysis from previous versions
-    // This handles the case where entity code changed but we want to show the old analysis
+    // Query by entity name to get ALL analyses across all versions of this entity
+    // This ensures we always show the most recent analysis, even if it's from a different version
     if (entity.name && entity.projectId) {
         const byName = await loadAnalyses({
             projectId: entity.projectId,
             entityName: entity.name,
-            limit: 10, // Get a few to find the most recent completed one
+            limit: 10, // Get recent analyses
         });
         if (byName && byName.length > 0) {
             // Filter to analyses that have scenarios (completed analyses)
@@ -143,18 +138,48 @@ export async function getLatestAnalysisForEntity(entity) {
                 return hasScenarios && filePathMatches;
             });
             if (completedAnalyses.length > 0) {
-                // Return the most recent completed analysis
+                // Sort by createdAt descending and return the most recent
+                completedAnalyses.sort((a, b) => {
+                    const dateA = new Date(a.createdAt || 0).getTime();
+                    const dateB = new Date(b.createdAt || 0).getTime();
+                    return dateB - dateA;
+                });
                 return completedAnalyses[0];
             }
             // If no completed analyses with matching file path, return most recent with scenarios
-            const anyCompleted = byName.find((a) => a.scenarios && a.scenarios.length > 0);
-            if (anyCompleted) {
-                return anyCompleted;
+            const withScenarios = byName.filter((a) => a.scenarios && a.scenarios.length > 0);
+            if (withScenarios.length > 0) {
+                withScenarios.sort((a, b) => {
+                    const dateA = new Date(a.createdAt || 0).getTime();
+                    const dateB = new Date(b.createdAt || 0).getTime();
+                    return dateB - dateA;
+                });
+                return withScenarios[0];
             }
         }
     }
+    // Fall back to exact sha match (for entities without name/projectId)
+    const exactMatch = await loadAnalyses({
+        entityShas: [entity.sha],
+        limit: 1,
+    });
+    if (exactMatch && exactMatch.length > 0) {
+        return exactMatch[0];
+    }
     return null;
 }
+/**
+ * Get the analysis for the exact entity SHA, even if it errored and has no scenarios.
+ * This is used to detect if an analysis was attempted but failed.
+ */
+export async function getAnalysisForExactEntitySha(entitySha) {
+    await initializeEnvironment();
+    const analyses = await loadAnalyses({
+        entityShas: [entitySha],
+        limit: 1,
+    });
+    return analyses?.[0] ?? null;
+}
 export async function getEntityBySha(entitySha) {
     await initializeEnvironment();
     const projectSlug = await getProjectSlug();
@@ -178,11 +203,22 @@ export async function getRelatedEntities(entity) {
         for (const importedExport of importedExportsData) {
             if (!importedExport.filePath || !importedExport.name)
                 continue;
-            const entities = await loadEntities({
+            const resolvedFilePath = importedExport.resolvedFilePath ?? importedExport.filePath;
+            const resolvedName = importedExport.resolvedName ?? importedExport.name;
+            let entities = await loadEntities({
                 projectId: entity.projectId,
-                filePaths: [importedExport.filePath],
-                names: [importedExport.name],
+                filePaths: [resolvedFilePath],
+                names: [resolvedName],
             });
+            // Fallback: try finding by 'default' if the import is default
+            if ((!entities || entities.length === 0) &&
+                importedExport.resolvedIsDefault) {
+                entities = await loadEntities({
+                    projectId: entity.projectId,
+                    filePaths: [resolvedFilePath],
+                    names: ['default'],
+                });
+            }
             if (entities && entities.length > 0) {
                 const foundEntity = entities[0];
                 // Get screenshot from first analysis if available
@@ -327,10 +363,12 @@ export async function getCurrentCommit() {
         }
         const { project, branch } = await requireBranchAndProject(projectSlug);
         // Load the latest commit for this branch
+        // skipRelations: true avoids loading analyses/entities which we don't need for commit metadata
         const commits = await loadCommits({
             projectId: project.id,
             branchId: branch.id,
             limit: 1,
+            skipRelations: true,
         });
         if (commits && commits.length > 0) {
             return commits[0];
@@ -376,6 +414,33 @@ export async function getEntityCodeFromFilesystem(entity) {
         return null;
     }
 }
+/**
+ * Check if the file on disk has been modified since the entity was created/updated.
+ * This helps detect changes that the file watcher may not have processed yet.
+ */
+export async function hasFileBeenModifiedSinceEntity(entity) {
+    try {
+        const projectRoot = getProjectRoot();
+        if (!projectRoot || !entity.filePath) {
+            return false;
+        }
+        const fullPath = path.join(projectRoot, entity.filePath);
+        const stats = await fs.stat(fullPath);
+        const fileModTime = stats.mtime.getTime();
+        // Use entity's updatedAt or createdAt timestamp
+        const entityTime = entity.updatedAt || entity.createdAt;
+        if (!entityTime) {
+            return false;
+        }
+        const entityTimestamp = new Date(entityTime).getTime();
+        // Add a small buffer (1 second) to account for timing differences
+        return fileModTime > entityTimestamp + 1000;
+    }
+    catch (error) {
+        // If we can't check, assume no change
+        return false;
+    }
+}
 export async function getEntityHistory(entity) {
     await initializeEnvironment();
     if (!entity.filePath || !entity.name || !entity.projectId) {

package/codeyam-cli/src/webserver/app/lib/database.js.map

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package/codeyam-cli/src/webserver/app/lib/dbNotifier.js.map

@@ -1 +1 @@
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package/codeyam-cli/src/webserver/backgroundServer.js

@@ -6,6 +6,7 @@ import { setProjectRoot } from "../state.js";
 import { AnalysisQueue } from "../utils/queue/manager.js";
 import { checkForStaleProcesses } from "../utils/queue/heartbeat.js";
 import { dbNotifier } from "./app/lib/dbNotifier.js";
+import { loadEntities, loadAnalyses, updateProjectMetadata, } from "../../../packages/database/index.js";
 import fs from 'fs';
 import path from 'path';
 // NOTE: NODE_ENV must be set BEFORE this file is imported (see bootstrap.ts)
@@ -36,6 +37,7 @@ console.log(`Starting CodeYam background server on port ${port}...`);
 let fileWatcher = null;
 let analysisQueue = null;
 let heartbeatInterval = null;
+let rulesWatcher = null;
 // Memory monitoring - log every minute to track memory usage patterns
 setInterval(() => {
     const mem = process.memoryUsage();
@@ -57,6 +59,29 @@ async function main() {
     analysisQueue = new AnalysisQueue(rootPath, dbNotifier);
     await analysisQueue.start();
     console.log('📋 Analysis queue initialized');
+    // Existing user migration: if the project has entities with analyses but
+    // labs.simulations is undefined, auto-enable simulations to avoid breaking
+    // existing users when we change the default from true to false
+    if (project?.slug && project.metadata?.labs?.simulations === undefined) {
+        try {
+            const entities = await loadEntities({ excludeMetadata: true });
+            if (entities && entities.length > 0) {
+                const entityShas = entities.map((e) => e.sha);
+                const analyses = await loadAnalyses({ entityShas });
+                const hasAnalyses = analyses && analyses.length > 0;
+                if (hasAnalyses) {
+                    await updateProjectMetadata({
+                        projectSlug: project.slug,
+                        metadataUpdate: { labs: { simulations: true } },
+                    });
+                    console.log('🔄 Migrated existing project: simulations auto-enabled');
+                }
+            }
+        }
+        catch (error) {
+            console.warn('⚠️  Failed to run labs migration check:', error);
+        }
+    }
     // Start file watcher BEFORE the server if we have project and branch info
     // This ensures the database is in sync with the filesystem before accepting requests
     if (project?.id && branch?.id) {
@@ -101,6 +126,25 @@ async function main() {
         dbNotifier, // Pass the SAME dbNotifier instance to Remix routes
     });
     console.log(`✅ CodeYam server running at ${url}`);
+    // Watch .claude/rules/ for changes so the memory page auto-refreshes
+    try {
+        const rulesDir = path.join(rootPath, '.claude', 'rules');
+        fs.mkdirSync(rulesDir, { recursive: true });
+        const { default: chokidar } = await import('chokidar');
+        rulesWatcher = chokidar.watch(rulesDir, {
+            persistent: true,
+            ignoreInitial: true,
+            depth: 5,
+        });
+        rulesWatcher
+            .on('add', () => dbNotifier.notifyChange('rules'))
+            .on('change', () => dbNotifier.notifyChange('rules'))
+            .on('unlink', () => dbNotifier.notifyChange('rules'));
+        console.log(`👀 Watching .claude/rules/ for memory page updates`);
+    }
+    catch (error) {
+        console.warn('⚠️  Failed to start rules watcher:', error);
+    }
 }
 main().catch((error) => {
     console.error('❌ Failed to start CodeYam server:', error);
@@ -112,6 +156,9 @@ process.on('SIGTERM', () => {
     if (fileWatcher) {
         fileWatcher.stop();
     }
+    if (rulesWatcher) {
+        void rulesWatcher.close();
+    }
     if (analysisQueue) {
         analysisQueue.pause();
     }
@@ -125,6 +172,9 @@ process.on('SIGINT', () => {
     if (fileWatcher) {
         fileWatcher.stop();
     }
+    if (rulesWatcher) {
+        void rulesWatcher.close();
+    }
     if (analysisQueue) {
         analysisQueue.pause();
     }

package/codeyam-cli/src/webserver/backgroundServer.js.map

@@ -1 +1 @@
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