@codeyam/codeyam-cli 0.1.0-staging.b8a55ba → 0.1.0-staging.bd4126b

package/codeyam-cli/src/utils/backgroundServer.js

@@ -2,7 +2,8 @@ import { spawn } from 'child_process';
 import * as path from 'path';
 import * as fs from 'fs';
 import { fileURLToPath } from 'url';
-import { isServerRunning, saveServerState } from "./serverState.js";
+import { isServerRunning, saveServerState, killServer } from "./serverState.js";
+import { cliVersion } from "./versionInfo.js";
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = path.dirname(__filename);
 export async function startBackgroundServer(options) {
@@ -11,7 +12,15 @@ export async function startBackgroundServer(options) {
     // Check if server is already running
     const { running, state } = isServerRunning();
     if (running && state) {
-        return { url: state.url, pid: state.pid, wasAlreadyRunning: true };
+        // Check for version mismatch - restart if CLI was updated
+        if (state.cliVersion !== cliVersion) {
+            console.log(`CLI version mismatch (server: ${state.cliVersion ?? 'unknown'} → CLI: ${cliVersion}), restarting server...`);
+            killServer();
+            // Fall through to spawn new server
+        }
+        else {
+            return { url: state.url, pid: state.pid, wasAlreadyRunning: true };
+        }
     }
     // Bootstrap new background server process
     const serverScriptPath = path.join(__dirname, '..', 'webserver', 'bootstrap.js');
@@ -20,24 +29,32 @@ export async function startBackgroundServer(options) {
     if (!fs.existsSync(logDir)) {
         fs.mkdirSync(logDir, { recursive: true });
     }
-    const outLog = fs.openSync(path.join(logDir, 'background-server.log'), 'a');
-    const errLog = fs.openSync(path.join(logDir, 'background-server-error.log'), 'a');
-    const child = spawn('node', [serverScriptPath], {
-        detached: true,
-        stdio: ['ignore', outLog, errLog],
-        env: {
-            ...process.env,
-            CODEYAM_PORT: port.toString(),
-            CODEYAM_ROOT_PATH: rootPath,
-            CODEYAM_PROJECT: project ? JSON.stringify(project) : '',
-            CODEYAM_BRANCH: branch ? JSON.stringify(branch) : '',
-            CODEYAM_PROCESS_NAME: `codeyam-${processName}`,
-        },
-    });
-    // Detach the child process so it can run independently
-    child.unref();
+    const serverEnv = {
+        CODEYAM_PORT: port.toString(),
+        CODEYAM_ROOT_PATH: rootPath,
+        CODEYAM_PROJECT: project ? JSON.stringify(project) : '',
+        CODEYAM_BRANCH: branch ? JSON.stringify(branch) : '',
+        CODEYAM_PROCESS_NAME: `codeyam-${processName}`,
+        ...(process.env.CODEYAM_TRACE_TRANSFORMS
+            ? { CODEYAM_TRACE_TRANSFORMS: process.env.CODEYAM_TRACE_TRANSFORMS }
+            : {}),
+    };
+    let childPid;
+    if (process.platform === 'win32') {
+        childPid = await spawnServerWindows(serverScriptPath, serverEnv, logDir);
+    }
+    else {
+        const outLog = fs.openSync(path.join(logDir, 'background-server.log'), 'a');
+        const errLog = fs.openSync(path.join(logDir, 'background-server-error.log'), 'a');
+        const child = spawn('node', [serverScriptPath], {
+            detached: true,
+            stdio: ['ignore', outLog, errLog],
+            env: { ...process.env, ...serverEnv },
+        });
+        child.unref();
+        childPid = child.pid;
+    }
     // Poll health endpoint until server is ready (includes FileWatcher initial sync)
-    // This replaces the old arbitrary 1-second wait with actual readiness detection
     const healthUrl = `${url}/api/health`;
     const maxWaitMs = 60000; // 60 second timeout (initial sync can take time for large projects)
     const pollIntervalMs = 200;
@@ -61,14 +78,78 @@ export async function startBackgroundServer(options) {
     }
     // Save server state
     const serverState = {
-        pid: child.pid,
+        pid: childPid,
         port,
         url,
         startTime: Date.now(),
         projectRoot: rootPath,
         logDir,
+        cliVersion,
     };
     saveServerState(serverState);
-    return { url, pid: child.pid, wasAlreadyRunning: false };
+    return { url, pid: childPid, wasAlreadyRunning: false };
+}
+/**
+ * On Windows, Node's spawn with detached:true uses DETACHED_PROCESS |
+ * CREATE_NEW_PROCESS_GROUP flags, and windowsHide adds CREATE_NO_WINDOW.
+ * These flags conflict — the result is neither properly hidden nor properly
+ * detached (the process still gets killed by the parent's Job Object).
+ *
+ * Instead, we use PowerShell's Start-Process which creates a truly independent
+ * process with a hidden window via -WindowStyle Hidden.
+ *
+ * Flow: write .ps1 script that sets env vars and starts node directly →
+ * run PowerShell hidden → capture the node PID from stdout.
+ *
+ * Log redirection is handled by bootstrap.ts via the CODEYAM_LOG_DIR env var
+ * (since Start-Process -WindowStyle Hidden can't use -RedirectStandardOutput).
+ */
+async function spawnServerWindows(serverScriptPath, serverEnv, logDir) {
+    // Escape single quotes for PowerShell single-quoted strings (' → '')
+    const psEscape = (s) => s.replace(/'/g, "''");
+    // Build PowerShell script that sets env vars and starts node hidden
+    const psScriptPath = path.join(logDir, 'start-server.ps1');
+    const envLines = Object.entries(serverEnv).map(([key, val]) => `$env:${key} = '${psEscape(val)}'`);
+    fs.writeFileSync(psScriptPath, [
+        ...envLines,
+        // Tell bootstrap.ts to redirect stdout/stderr to log files
+        `$env:CODEYAM_LOG_DIR = '${psEscape(logDir)}'`,
+        // Start node with bootstrap.js in a hidden window
+        `$bootstrapPath = '${psEscape(serverScriptPath)}'`,
+        `$p = Start-Process -FilePath "node" -ArgumentList ('"{0}"' -f $bootstrapPath) -WindowStyle Hidden -PassThru`,
+        `Write-Output $p.Id`,
+    ].join('\n'));
+    // Run PowerShell hidden to start the server and get the PID
+    return new Promise((resolve, reject) => {
+        const ps = spawn('powershell.exe', ['-NoProfile', '-ExecutionPolicy', 'Bypass', '-File', psScriptPath], {
+            windowsHide: true,
+            stdio: ['ignore', 'pipe', 'pipe'],
+        });
+        let stdout = '';
+        let stderr = '';
+        ps.stdout.on('data', (d) => {
+            stdout += d.toString();
+        });
+        ps.stderr.on('data', (d) => {
+            stderr += d.toString();
+        });
+        const timeout = setTimeout(() => {
+            ps.kill();
+            reject(new Error('Timed out waiting for PowerShell to start server (30s)'));
+        }, 30000);
+        ps.on('close', (code) => {
+            clearTimeout(timeout);
+            if (code !== 0) {
+                reject(new Error(`Failed to start server via PowerShell (exit ${code}): ${stderr}`));
+                return;
+            }
+            const pid = parseInt(stdout.trim(), 10);
+            if (isNaN(pid)) {
+                reject(new Error(`Failed to parse server PID from PowerShell output: ${stdout}`));
+                return;
+            }
+            resolve(pid);
+        });
+    });
 }
 //# sourceMappingURL=backgroundServer.js.map

package/codeyam-cli/src/utils/backgroundServer.js.map

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package/codeyam-cli/src/utils/database.js

@@ -1,6 +1,7 @@
 import { setupSecrets } from "./secrets.js";
 import { generateSha, loadBranches, loadProject, upsertBranches, upsertCommits, upsertProjects, } from "../../../packages/database/index.js";
 import { randomUUID } from 'crypto';
+import { execSync } from 'child_process';
 import path from 'path';
 import { getProjectRoot } from "../state.js";
 import { updateCommitBranchesInDb } from "../../../packages/github/index.js";
@@ -152,8 +153,52 @@ export async function ensureLocalBranch(project) {
  */
 export async function createFakeCommit(project, branch, files) {
     await initializeEnvironment();
+    const projectRoot = getProjectRoot();
     // Generate unique commit SHA
     const sha = generateSha(`${project.slug}-local-${Date.now()}-${Math.random()}`);
+    // Generate git diff for each file to support proper change detection
+    const commitFiles = files.map((fileName) => {
+        let patch = '';
+        if (projectRoot) {
+            try {
+                // Get the diff between HEAD and the working copy
+                // This captures both staged and unstaged changes
+                patch = execSync(`git diff HEAD -- "${fileName}"`, {
+                    cwd: projectRoot,
+                    encoding: 'utf8',
+                    stdio: ['pipe', 'pipe', 'ignore'],
+                    maxBuffer: 1024 * 1024 * 10, // 10MB buffer for large diffs
+                });
+                // If no diff from HEAD, check if it's a new untracked file
+                if (!patch) {
+                    // For untracked files, generate a patch showing all lines as additions
+                    try {
+                        const fileContent = execSync(`cat "${fileName}"`, {
+                            cwd: projectRoot,
+                            encoding: 'utf8',
+                            stdio: ['pipe', 'pipe', 'ignore'],
+                        });
+                        if (fileContent) {
+                            const lines = fileContent.split('\n');
+                            patch = `@@ -0,0 +1,${lines.length} @@\n${lines.map((l) => `+${l}`).join('\n')}`;
+                        }
+                    }
+                    catch {
+                        // File might not exist, that's ok
+                    }
+                }
+            }
+            catch {
+                // Git diff failed, leave patch empty
+                // This can happen if the file is new and untracked
+            }
+        }
+        return {
+            fileName,
+            status: 'modified',
+            patch,
+        };
+    });
     const commit = {
         sha,
         projectId: project.id,
@@ -167,11 +212,7 @@ export async function createFakeCommit(project, branch, files) {
         },
         committedAt: new Date().toISOString(),
         parents: [], // No parents for simplicity
-        files: files.map((fileName) => ({
-            fileName,
-            status: 'modified', // Safe default for analysis
-            patch: '', // Empty patch is fine - system doesn't require it
-        })),
+        files: commitFiles,
         metadata: {
             baseline: false,
             receivedAt: new Date().toISOString(),
@@ -191,4 +232,49 @@ export async function createFakeCommit(project, branch, files) {
     });
     return createdCommits[0];
 }
+/**
+ * Create a baseline commit using a real git SHA.
+ *
+ * Unlike createFakeCommit which generates a random SHA, this uses the actual
+ * git HEAD SHA. This makes baselineSha meaningful for debugging and
+ * reproducibility.
+ *
+ * The commit is still marked with local:// URL to indicate it was created
+ * by the CLI (not fetched from GitHub).
+ */
+export async function createBaselineCommit(project, branch, realGitSha) {
+    await initializeEnvironment();
+    const commit = {
+        sha: realGitSha,
+        projectId: project.id,
+        branchId: branch.id,
+        message: `Baseline at ${realGitSha.substring(0, 8)}`,
+        url: `local://codeyam/${project.slug}/${realGitSha}`,
+        htmlUrl: `local://codeyam/${project.slug}/${realGitSha}`,
+        author: {
+            username: 'local-dev',
+            avatarUrl: 'https://github.com/identicons/local-dev.png',
+        },
+        committedAt: new Date().toISOString(),
+        parents: [],
+        files: [], // Baseline doesn't track specific changed files
+        metadata: {
+            baseline: true,
+            receivedAt: new Date().toISOString(),
+        },
+    };
+    const createdCommits = await upsertCommits({
+        projectId: project.id,
+        commits: [commit],
+    });
+    if (!createdCommits || createdCommits.length === 0) {
+        throw new Error('Failed to create baseline commit');
+    }
+    await updateCommitBranchesInDb({
+        projectId: project.id,
+        commit: createdCommits[0],
+        branch,
+    });
+    return createdCommits[0];
+}
 //# sourceMappingURL=database.js.map

package/codeyam-cli/src/utils/database.js.map

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package/codeyam-cli/src/utils/generateReport.js

@@ -122,8 +122,9 @@ function generateDelta(options) {
     fs.mkdirSync(deltaDir, { recursive: true });
     try {
         // 1. Generate tracked changes patch
+        // Note: execGit().trim() strips the trailing newline, but git patches require it
         const patchContent = execGit('diff --binary HEAD', projectRoot) || '';
-        fs.writeFileSync(path.join(deltaDir, 'tracked.patch'), patchContent);
+        fs.writeFileSync(path.join(deltaDir, 'tracked.patch'), patchContent ? patchContent + '\n' : '');
         // 2. Copy untracked files (respecting .gitignore)
         const untrackedFiles = execGit('ls-files --others --exclude-standard', projectRoot);
         if (untrackedFiles) {
@@ -158,7 +159,7 @@ function generateDelta(options) {
         else {
             fs.writeFileSync(path.join(deltaDir, 'codeyam-log.txt'), '# Log file not found\n');
         }
-        // 6. Add debug report if exists (from /debug-codeyam workflow)
+        // 6. Add debug report if exists (from /codeyam-diagnose workflow)
         const debugReportPath = path.join(projectRoot, '.codeyam', 'debug-report.md');
         if (fs.existsSync(debugReportPath)) {
             fs.copyFileSync(debugReportPath, path.join(deltaDir, 'debug-report.md'));
@@ -213,7 +214,7 @@ export async function generateBundleArchive(options) {
             ...(feedback || { issueType: 'other', source: 'cli' }),
             debugReport,
         };
-        log('Found debug report from /debug-codeyam workflow');
+        log('Found debug report from /codeyam-diagnose workflow');
     }
     const metadata = {
         timestamp: new Date().toISOString(),

package/codeyam-cli/src/utils/generateReport.js.map

@@ -1 +1 @@
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package/codeyam-cli/src/utils/git.js

@@ -0,0 +1,79 @@
+import { execSync } from 'child_process';
+/**
+ * Check if the git working directory is clean (no uncommitted changes to tracked files).
+ * Used by baseline command to ensure we're analyzing a known git state.
+ *
+ * Note: Untracked files are ignored - they're not part of the commit SHA
+ * and typically include things like .idea/, .codeyam/, editor configs, etc.
+ */
+export function checkGitClean(rootPath) {
+    const workingDir = rootPath || process.cwd();
+    try {
+        const output = execSync('git status --porcelain', {
+            cwd: workingDir,
+            encoding: 'utf8',
+            stdio: ['pipe', 'pipe', 'ignore'],
+        });
+        const lines = output
+            .trim()
+            .split('\n')
+            .filter((line) => line.length > 0);
+        // Filter out untracked files (lines starting with ??)
+        // We only care about changes to tracked files
+        const trackedChanges = lines.filter((line) => !line.startsWith('??'));
+        if (trackedChanges.length === 0) {
+            return { clean: true, files: [] };
+        }
+        // Parse file paths from git status output
+        const files = trackedChanges.map((line) => {
+            // Git status format: XY filename
+            // Skip the two status characters and any following whitespace
+            return line
+                .slice(2)
+                .replace(/^[ \t]+/, '')
+                .trim();
+        });
+        return { clean: false, files };
+    }
+    catch (error) {
+        // If git status fails, assume not clean (safer)
+        console.error('Failed to check git status:', error);
+        return { clean: false, files: ['(unable to determine)'] };
+    }
+}
+/**
+ * Get the current HEAD commit SHA.
+ * Used by baseline command to create a commit record with the real git SHA.
+ */
+export function getHeadSha(rootPath) {
+    const workingDir = rootPath || process.cwd();
+    try {
+        const output = execSync('git rev-parse HEAD', {
+            cwd: workingDir,
+            encoding: 'utf8',
+            stdio: ['pipe', 'pipe', 'ignore'],
+        });
+        return output.trim();
+    }
+    catch (error) {
+        throw new Error(`Failed to get HEAD SHA: ${error}`);
+    }
+}
+/**
+ * Check if we're in a git repository.
+ */
+export function isGitRepo(rootPath) {
+    const workingDir = rootPath || process.cwd();
+    try {
+        execSync('git rev-parse --git-dir', {
+            cwd: workingDir,
+            encoding: 'utf8',
+            stdio: ['pipe', 'pipe', 'ignore'],
+        });
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+//# sourceMappingURL=git.js.map

package/codeyam-cli/src/utils/git.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"git.js","sourceRoot":"","sources":["../../../../src/utils/git.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AAOzC;;;;;;GAMG;AACH,MAAM,UAAU,aAAa,CAAC,QAAiB;IAC7C,MAAM,UAAU,GAAG,QAAQ,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;IAE7C,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,QAAQ,CAAC,wBAAwB,EAAE;YAChD,GAAG,EAAE,UAAU;YACf,QAAQ,EAAE,MAAM;YAChB,KAAK,EAAE,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,CAAC;SAClC,CAAC,CAAC;QAEH,MAAM,KAAK,GAAG,MAAM;aACjB,IAAI,EAAE;aACN,KAAK,CAAC,IAAI,CAAC;aACX,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;QAErC,sDAAsD;QACtD,8CAA8C;QAC9C,MAAM,cAAc,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC;QAEtE,IAAI,cAAc,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAChC,OAAO,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC;QACpC,CAAC;QAED,0CAA0C;QAC1C,MAAM,KAAK,GAAG,cAAc,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE;YACxC,iCAAiC;YACjC,8DAA8D;YAC9D,OAAO,IAAI;iBACR,KAAK,CAAC,CAAC,CAAC;iBACR,OAAO,CAAC,SAAS,EAAE,EAAE,CAAC;iBACtB,IAAI,EAAE,CAAC;QACZ,CAAC,CAAC,CAAC;QAEH,OAAO,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC;IACjC,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,gDAAgD;QAChD,OAAO,CAAC,KAAK,CAAC,6BAA6B,EAAE,KAAK,CAAC,CAAC;QACpD,OAAO,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,CAAC,uBAAuB,CAAC,EAAE,CAAC;IAC5D,CAAC;AACH,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,UAAU,CAAC,QAAiB;IAC1C,MAAM,UAAU,GAAG,QAAQ,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;IAE7C,IAAI,CAAC;QACH,MAAM,MAAM,GAAG,QAAQ,CAAC,oBAAoB,EAAE;YAC5C,GAAG,EAAE,UAAU;YACf,QAAQ,EAAE,MAAM;YAChB,KAAK,EAAE,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,CAAC;SAClC,CAAC,CAAC;QAEH,OAAO,MAAM,CAAC,IAAI,EAAE,CAAC;IACvB,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,MAAM,IAAI,KAAK,CAAC,2BAA2B,KAAK,EAAE,CAAC,CAAC;IACtD,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,SAAS,CAAC,QAAiB;IACzC,MAAM,UAAU,GAAG,QAAQ,IAAI,OAAO,CAAC,GAAG,EAAE,CAAC;IAE7C,IAAI,CAAC;QACH,QAAQ,CAAC,yBAAyB,EAAE;YAClC,GAAG,EAAE,UAAU;YACf,QAAQ,EAAE,MAAM;YAChB,KAAK,EAAE,CAAC,MAAM,EAAE,MAAM,EAAE,QAAQ,CAAC;SAClC,CAAC,CAAC;QACH,OAAO,IAAI,CAAC;IACd,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,KAAK,CAAC;IACf,CAAC;AACH,CAAC"}

package/codeyam-cli/src/utils/install-skills.js

@@ -3,49 +3,88 @@ import * as path from 'path';
 import { fileURLToPath } from 'url';
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = path.dirname(__filename);
-export async function installClaudeCodeSkills(projectRoot) {
+export async function installClaudeCodeSkills(projectRoot, options) {
+    const mode = options?.mode ?? 'memory';
     try {
-        // Create .claude/skills directories in project root
         const skillsDir = path.join(projectRoot, '.claude', 'skills');
+        const templatesDir = path.join(__dirname, '../../templates');
+        // Memory + setup skills — always installed
+        const memorySkillDir = path.join(skillsDir, 'codeyam-memory');
+        const newRuleSkillDir = path.join(skillsDir, 'codeyam-new-rule');
         const setupSkillDir = path.join(skillsDir, 'codeyam-setup');
-        const simSkillDir = path.join(skillsDir, 'codeyam-sim');
-        const testSkillDir = path.join(skillsDir, 'codeyam-test');
-        const verifySkillDir = path.join(skillsDir, 'codeyam-verify');
+        await fs.mkdir(memorySkillDir, { recursive: true });
+        await fs.mkdir(newRuleSkillDir, { recursive: true });
         await fs.mkdir(setupSkillDir, { recursive: true });
-        await fs.mkdir(simSkillDir, { recursive: true });
-        await fs.mkdir(testSkillDir, { recursive: true });
-        await fs.mkdir(verifySkillDir, { recursive: true });
-        // Create .claude/commands directory for slash commands
-        const commandsDir = path.join(projectRoot, '.claude', 'commands');
-        await fs.mkdir(commandsDir, { recursive: true });
-        // Create .codeyam/bin directory for helper scripts
+        await fs.copyFile(path.join(templatesDir, 'codeyam-memory.md'), path.join(memorySkillDir, 'SKILL.md'));
+        await fs.copyFile(path.join(templatesDir, 'codeyam-new-rule.md'), path.join(newRuleSkillDir, 'SKILL.md'));
+        await fs.copyFile(path.join(templatesDir, 'codeyam-setup.md'), path.join(setupSkillDir, 'SKILL.md'));
+        // Simulation skills — only in full mode
+        if (mode === 'full') {
+            const simSkillDir = path.join(skillsDir, 'codeyam-sim');
+            const testSkillDir = path.join(skillsDir, 'codeyam-test');
+            const verifySkillDir = path.join(skillsDir, 'codeyam-verify');
+            await fs.mkdir(simSkillDir, { recursive: true });
+            await fs.mkdir(testSkillDir, { recursive: true });
+            await fs.mkdir(verifySkillDir, { recursive: true });
+            await fs.copyFile(path.join(templatesDir, 'codeyam-sim.md'), path.join(simSkillDir, 'SKILL.md'));
+            await fs.copyFile(path.join(templatesDir, 'codeyam-test.md'), path.join(testSkillDir, 'SKILL.md'));
+            await fs.copyFile(path.join(templatesDir, 'codeyam-verify.md'), path.join(verifySkillDir, 'SKILL.md'));
+            // Diagnose command — only in full mode
+            const commandsDir = path.join(projectRoot, '.claude', 'commands');
+            await fs.mkdir(commandsDir, { recursive: true });
+            await fs.copyFile(path.join(templatesDir, 'codeyam-diagnose.md'), path.join(commandsDir, 'codeyam-diagnose.md'));
+        }
+        // Helper scripts and hooks — always installed
         const binDir = path.join(projectRoot, '.codeyam', 'bin');
         await fs.mkdir(binDir, { recursive: true });
-        // Find templates directory (go up from dist if built)
-        const templatesDir = path.join(__dirname, '../../templates');
-        // Copy skill files to proper SKILL.md locations
-        const setupSkillSrc = path.join(templatesDir, 'codeyam-setup-skill.md');
-        const simSkillSrc = path.join(templatesDir, 'codeyam-sim-skill.md');
-        const testSkillSrc = path.join(templatesDir, 'codeyam-test-skill.md');
-        const verifySkillSrc = path.join(templatesDir, 'codeyam-verify-skill.md');
-        const setupSkillDest = path.join(setupSkillDir, 'SKILL.md');
-        const simSkillDest = path.join(simSkillDir, 'SKILL.md');
-        const testSkillDest = path.join(testSkillDir, 'SKILL.md');
-        const verifySkillDest = path.join(verifySkillDir, 'SKILL.md');
-        await fs.copyFile(setupSkillSrc, setupSkillDest);
-        await fs.copyFile(simSkillSrc, simSkillDest);
-        await fs.copyFile(testSkillSrc, testSkillDest);
-        await fs.copyFile(verifySkillSrc, verifySkillDest);
-        // Copy command files to .claude/commands/
-        const debugCommandSrc = path.join(templatesDir, 'debug-codeyam.md');
-        const debugCommandDest = path.join(commandsDir, 'debug-codeyam.md');
-        await fs.copyFile(debugCommandSrc, debugCommandDest);
-        // Copy main stop hook (correct JSON format)
-        // const stopHookSrc = path.join(templatesDir, 'codeyam-stop-hook.sh');
-        // const stopHookDest = path.join(binDir, 'codeyam-stop-hook.sh');
-        // await fs.copyFile(stopHookSrc, stopHookDest);
-        // Make scripts executable
-        // await fs.chmod(stopHookDest, 0o755);
+        const rulesDir = path.join(projectRoot, '.codeyam', 'rules');
+        await fs.mkdir(rulesDir, { recursive: true });
+        // Memory pre-commit hook
+        try {
+            const memoryHookDest = path.join(binDir, 'memory-hook.sh');
+            await fs.copyFile(path.join(templatesDir, 'codeyam-memory-hook.sh'), memoryHookDest);
+            await fs.chmod(memoryHookDest, 0o755);
+        }
+        catch {
+            // Hook script is optional - skill will create it if missing
+        }
+        // Rule reflection hook
+        try {
+            const ruleReflectionHookDest = path.join(binDir, 'rule-reflection-hook.py');
+            await fs.copyFile(path.join(templatesDir, 'rule-reflection-hook.py'), ruleReflectionHookDest);
+            await fs.chmod(ruleReflectionHookDest, 0o755);
+        }
+        catch {
+            // Hook script is optional
+        }
+        // Rule notification hook
+        try {
+            const ruleNotificationHookDest = path.join(binDir, 'rule-notification-hook.py');
+            await fs.copyFile(path.join(templatesDir, 'rule-notification-hook.py'), ruleNotificationHookDest);
+            await fs.chmod(ruleNotificationHookDest, 0o755);
+        }
+        catch {
+            // Hook script is optional
+        }
+        // Prompt templates
+        try {
+            const promptsDestDir = path.join(binDir, 'prompts');
+            await fs.mkdir(promptsDestDir, { recursive: true });
+            const promptFiles = await fs.readdir(path.join(templatesDir, 'prompts'));
+            for (const file of promptFiles) {
+                await fs.copyFile(path.join(templatesDir, 'prompts', file), path.join(promptsDestDir, file));
+            }
+        }
+        catch {
+            // Prompt templates are optional
+        }
+        // Rules instructions
+        try {
+            await fs.copyFile(path.join(templatesDir, 'rules-instructions.md'), path.join(rulesDir, 'instructions.md'));
+        }
+        catch {
+            // Instructions file is optional - skill will guide if missing
+        }
         return {
             success: true,
             skillsPath: path.relative(projectRoot, skillsDir),