@codeyam/codeyam-cli 0.1.0-staging.15d0f46 → 0.1.0-staging.1669d45

package/codeyam-cli/src/utils/__tests__/setupClaudeCodeSettings.test.js

@@ -56,7 +56,7 @@ describe('setupClaudeCodeSettings', () => {
             const writtenContent = mockFs.writeFileSync.mock
                 .calls[0][1];
             const settings = JSON.parse(writtenContent);
-            expect(settings.permissions.allow).toContain('Skill(codeyam-setup)');
+            expect(settings.permissions.allow).toContain('Skill(codeyam:setup)');
             expect(settings.permissions.allow).toContain('Bash(codeyam)');
             expect(settings.permissions.allow).toContain('Read(.codeyam/**)');
             expect(result).toBe(true);
@@ -71,11 +71,11 @@ describe('setupClaudeCodeSettings', () => {
                 writtenSettings = JSON.parse(content);
             });
             const result = setupClaudeCodeSettings(projectRoot);
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-setup)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-sim)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-debug)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-test)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-verify)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:setup)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:sim)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:debug)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:test)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:verify)');
             expect(writtenSettings.permissions.allow).toContain('Bash(codeyam:*)');
             expect(writtenSettings.otherSetting).toBe('value');
             expect(result).toBe(true);
@@ -93,8 +93,8 @@ describe('setupClaudeCodeSettings', () => {
             });
             const result = setupClaudeCodeSettings(projectRoot);
             expect(writtenSettings.permissions.allow).toContain('some-other-tool');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-setup)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-sim)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:setup)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:sim)');
             expect(writtenSettings.permissions.allow).toContain('Write(.codeyam/**)');
             expect(result).toBe(true);
         });
@@ -103,11 +103,11 @@ describe('setupClaudeCodeSettings', () => {
             mockFs.readFileSync.mockReturnValue(JSON.stringify({
                 permissions: {
                     allow: [
-                        'Skill(codeyam-setup)',
-                        'Skill(codeyam-sim)',
-                        'Skill(codeyam-debug)',
-                        'Skill(codeyam-test)',
-                        'Skill(codeyam-verify)',
+                        'Skill(codeyam:setup)',
+                        'Skill(codeyam:sim)',
+                        'Skill(codeyam:debug)',
+                        'Skill(codeyam:test)',
+                        'Skill(codeyam:verify)',
                         'Bash(codeyam)',
                         'Bash(codeyam:*)',
                         'Read(.codeyam/**)',
@@ -132,10 +132,10 @@ describe('setupClaudeCodeSettings', () => {
             mockFs.readFileSync.mockReturnValue(JSON.stringify({
                 permissions: {
                     allow: [
-                        'Skill(codeyam-setup)',
-                        'Skill(codeyam-sim)',
+                        'Skill(codeyam:setup)',
+                        'Skill(codeyam:sim)',
                         'other-tool',
-                        // Missing: Skill(codeyam-debug), Skill(codeyam-test), Skill(codeyam-verify), all Bash and file ops
+                        // Missing: Skill(codeyam:debug), Skill(codeyam:test), Skill(codeyam:verify), all Bash and file ops
                     ],
                 },
             }));
@@ -144,15 +144,15 @@ describe('setupClaudeCodeSettings', () => {
                 writtenSettings = JSON.parse(content);
             });
             const result = setupClaudeCodeSettings(projectRoot);
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-setup)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-sim)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-debug)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-test)');
-            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam-verify)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:setup)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:sim)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:debug)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:test)');
+            expect(writtenSettings.permissions.allow).toContain('Skill(codeyam:verify)');
             expect(writtenSettings.permissions.allow).toContain('Bash(codeyam)');
             expect(writtenSettings.permissions.allow).toContain('other-tool');
             // Should not duplicate existing ones
-            const setupCount = writtenSettings.permissions.allow.filter((p) => p === 'Skill(codeyam-setup)').length;
+            const setupCount = writtenSettings.permissions.allow.filter((p) => p === 'Skill(codeyam:setup)').length;
             expect(setupCount).toBe(1);
             expect(result).toBe(true);
         });
@@ -195,11 +195,11 @@ describe('setupClaudeCodeSettings', () => {
             mockFs.readFileSync.mockReturnValue(JSON.stringify({
                 permissions: {
                     allow: [
-                        'Skill(codeyam-setup)',
-                        'Skill(codeyam-sim)',
-                        'Skill(codeyam-debug)',
-                        'Skill(codeyam-test)',
-                        'Skill(codeyam-verify)',
+                        'Skill(codeyam:setup)',
+                        'Skill(codeyam:sim)',
+                        'Skill(codeyam:debug)',
+                        'Skill(codeyam:test)',
+                        'Skill(codeyam:verify)',
                         'Bash(codeyam)',
                         'Bash(codeyam:*)',
                         'Read(.codeyam/**)',

package/codeyam-cli/src/utils/analysisRunner.js

@@ -3,7 +3,6 @@ import * as path from 'path';
 import { ProgressReporter, withoutSpinner } from "./progress.js";
 import { createFakeCommit, requireBranchAndProject, testEnvironment, } from "./database.js";
 import { startBackgroundServer } from "./backgroundServer.js";
-import { isServerRunning } from "./serverState.js";
 import { updateCommitMetadata } from "../../../packages/database/index.js";
 import { getCurrentEntities } from "../webserver/app/lib/database.js";
 import { pushNewCommitRun } from "../../../packages/utils/server.js";
@@ -49,22 +48,18 @@ export async function runAnalysisForEntities(options) {
     reporter.start('Loading project from database...');
     const { project, branch } = await requireBranchAndProject(projectSlug);
     reporter.succeed('Loaded project and branch');
-    // Start web server if not already running
+    // Start web server if not already running (also handles version mismatch detection)
     reporter.start('Starting web server...');
-    const { running, state } = isServerRunning();
-    let serverUrl;
-    if (running && state) {
-        serverUrl = state.url;
+    const { url: serverUrl, wasAlreadyRunning } = await startBackgroundServer({
+        port: 3111,
+        rootPath: projectRoot,
+        project,
+        branch,
+    });
+    if (wasAlreadyRunning) {
         reporter.succeed(`Web server already running at ${serverUrl}`);
     }
     else {
-        const { url } = await startBackgroundServer({
-            port: 3111,
-            rootPath: projectRoot,
-            project,
-            branch,
-        });
-        serverUrl = url;
         reporter.succeed(`Web server started at ${serverUrl}`);
     }
     // Resolve entity SHAs if entity names are provided

package/codeyam-cli/src/utils/analysisRunner.js.map

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package/codeyam-cli/src/utils/backgroundServer.js

@@ -2,7 +2,8 @@ import { spawn } from 'child_process';
 import * as path from 'path';
 import * as fs from 'fs';
 import { fileURLToPath } from 'url';
-import { isServerRunning, saveServerState } from "./serverState.js";
+import { isServerRunning, saveServerState, killServer } from "./serverState.js";
+import { cliVersion } from "./versionInfo.js";
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = path.dirname(__filename);
 export async function startBackgroundServer(options) {
@@ -11,7 +12,15 @@ export async function startBackgroundServer(options) {
     // Check if server is already running
     const { running, state } = isServerRunning();
     if (running && state) {
-        return { url: state.url, pid: state.pid, wasAlreadyRunning: true };
+        // Check for version mismatch - restart if CLI was updated
+        if (state.cliVersion !== cliVersion) {
+            console.log(`CLI version mismatch (server: ${state.cliVersion ?? 'unknown'} → CLI: ${cliVersion}), restarting server...`);
+            killServer();
+            // Fall through to spawn new server
+        }
+        else {
+            return { url: state.url, pid: state.pid, wasAlreadyRunning: true };
+        }
     }
     // Bootstrap new background server process
     const serverScriptPath = path.join(__dirname, '..', 'webserver', 'bootstrap.js');
@@ -67,6 +76,7 @@ export async function startBackgroundServer(options) {
         startTime: Date.now(),
         projectRoot: rootPath,
         logDir,
+        cliVersion,
     };
     saveServerState(serverState);
     return { url, pid: child.pid, wasAlreadyRunning: false };

package/codeyam-cli/src/utils/backgroundServer.js.map

@@ -1 +1 @@
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package/codeyam-cli/src/utils/database.js

@@ -1,6 +1,7 @@
 import { setupSecrets } from "./secrets.js";
 import { generateSha, loadBranches, loadProject, upsertBranches, upsertCommits, upsertProjects, } from "../../../packages/database/index.js";
 import { randomUUID } from 'crypto';
+import { execSync } from 'child_process';
 import path from 'path';
 import { getProjectRoot } from "../state.js";
 import { updateCommitBranchesInDb } from "../../../packages/github/index.js";
@@ -152,8 +153,52 @@ export async function ensureLocalBranch(project) {
  */
 export async function createFakeCommit(project, branch, files) {
     await initializeEnvironment();
+    const projectRoot = getProjectRoot();
     // Generate unique commit SHA
     const sha = generateSha(`${project.slug}-local-${Date.now()}-${Math.random()}`);
+    // Generate git diff for each file to support proper change detection
+    const commitFiles = files.map((fileName) => {
+        let patch = '';
+        if (projectRoot) {
+            try {
+                // Get the diff between HEAD and the working copy
+                // This captures both staged and unstaged changes
+                patch = execSync(`git diff HEAD -- "${fileName}"`, {
+                    cwd: projectRoot,
+                    encoding: 'utf8',
+                    stdio: ['pipe', 'pipe', 'ignore'],
+                    maxBuffer: 1024 * 1024 * 10, // 10MB buffer for large diffs
+                });
+                // If no diff from HEAD, check if it's a new untracked file
+                if (!patch) {
+                    // For untracked files, generate a patch showing all lines as additions
+                    try {
+                        const fileContent = execSync(`cat "${fileName}"`, {
+                            cwd: projectRoot,
+                            encoding: 'utf8',
+                            stdio: ['pipe', 'pipe', 'ignore'],
+                        });
+                        if (fileContent) {
+                            const lines = fileContent.split('\n');
+                            patch = `@@ -0,0 +1,${lines.length} @@\n${lines.map((l) => `+${l}`).join('\n')}`;
+                        }
+                    }
+                    catch {
+                        // File might not exist, that's ok
+                    }
+                }
+            }
+            catch {
+                // Git diff failed, leave patch empty
+                // This can happen if the file is new and untracked
+            }
+        }
+        return {
+            fileName,
+            status: 'modified',
+            patch,
+        };
+    });
     const commit = {
         sha,
         projectId: project.id,
@@ -167,11 +212,7 @@ export async function createFakeCommit(project, branch, files) {
         },
         committedAt: new Date().toISOString(),
         parents: [], // No parents for simplicity
-        files: files.map((fileName) => ({
-            fileName,
-            status: 'modified', // Safe default for analysis
-            patch: '', // Empty patch is fine - system doesn't require it
-        })),
+        files: commitFiles,
         metadata: {
             baseline: false,
             receivedAt: new Date().toISOString(),
@@ -191,4 +232,49 @@ export async function createFakeCommit(project, branch, files) {
     });
     return createdCommits[0];
 }
+/**
+ * Create a baseline commit using a real git SHA.
+ *
+ * Unlike createFakeCommit which generates a random SHA, this uses the actual
+ * git HEAD SHA. This makes baselineSha meaningful for debugging and
+ * reproducibility.
+ *
+ * The commit is still marked with local:// URL to indicate it was created
+ * by the CLI (not fetched from GitHub).
+ */
+export async function createBaselineCommit(project, branch, realGitSha) {
+    await initializeEnvironment();
+    const commit = {
+        sha: realGitSha,
+        projectId: project.id,
+        branchId: branch.id,
+        message: `Baseline at ${realGitSha.substring(0, 8)}`,
+        url: `local://codeyam/${project.slug}/${realGitSha}`,
+        htmlUrl: `local://codeyam/${project.slug}/${realGitSha}`,
+        author: {
+            username: 'local-dev',
+            avatarUrl: 'https://github.com/identicons/local-dev.png',
+        },
+        committedAt: new Date().toISOString(),
+        parents: [],
+        files: [], // Baseline doesn't track specific changed files
+        metadata: {
+            baseline: true,
+            receivedAt: new Date().toISOString(),
+        },
+    };
+    const createdCommits = await upsertCommits({
+        projectId: project.id,
+        commits: [commit],
+    });
+    if (!createdCommits || createdCommits.length === 0) {
+        throw new Error('Failed to create baseline commit');
+    }
+    await updateCommitBranchesInDb({
+        projectId: project.id,
+        commit: createdCommits[0],
+        branch,
+    });
+    return createdCommits[0];
+}
 //# sourceMappingURL=database.js.map

package/codeyam-cli/src/utils/database.js.map

@@ -1 +1 @@
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