@cleocode/core 2026.4.30 → 2026.4.35

package/dist/nexus/nexus-bridge.js

@@ -0,0 +1,321 @@
+/**
+ * Nexus Bridge Generator
+ *
+ * Generates .cleo/nexus-bridge.md from nexus.db content. This file is
+ * the code intelligence equivalent of memory-bridge.md — it summarizes
+ * the codebase graph for agent consumption.
+ *
+ * Content assembly:
+ *   - Index status (file count, node count, relation count, last indexed)
+ *   - Symbol counts by kind (functions, classes, methods, etc.)
+ *   - Relation counts by type (calls, imports, extends, etc.)
+ *   - Top entry points (most outgoing CALLS edges, exported)
+ *   - Functional clusters (communities by symbol count)
+ *   - Code intelligence command reference
+ *
+ * Regeneration triggers:
+ *   - cleo nexus analyze (called after pipeline flush)
+ *   - Manual: cleo nexus refresh-bridge
+ *
+ * @task T551
+ * @epic T549
+ */
+import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'node:fs';
+import { join } from 'node:path';
+// ============================================================================
+// DB helpers
+// ============================================================================
+/** Type-safe wrapper for DatabaseSync.prepare().all(). */
+function typedAll(db, sql, ...params) {
+    return db.prepare(sql).all(...params);
+}
+/** Type-safe wrapper for DatabaseSync.prepare().get(). */
+function typedGet(db, sql, ...params) {
+    return db.prepare(sql).get(...params);
+}
+// ============================================================================
+// Query helpers
+// ============================================================================
+/** Query total node/relation counts and last indexed timestamp. */
+function queryIndexMeta(db, projectId) {
+    try {
+        const nodeMeta = typedGet(db, `SELECT COUNT(*) as total_nodes,
+              COUNT(CASE WHEN kind = 'file' THEN 1 END) as file_count,
+              MAX(indexed_at) as last_indexed_at
+       FROM nexus_nodes
+       WHERE project_id = ?`, projectId);
+        const relMeta = typedGet(db, `SELECT COUNT(*) as total_relations
+       FROM nexus_relations
+       WHERE project_id = ?`, projectId);
+        return {
+            total_nodes: nodeMeta?.total_nodes ?? 0,
+            total_relations: relMeta?.total_relations ?? 0,
+            file_count: nodeMeta?.file_count ?? 0,
+            last_indexed_at: nodeMeta?.last_indexed_at ?? null,
+        };
+    }
+    catch {
+        return {
+            total_nodes: 0,
+            total_relations: 0,
+            file_count: 0,
+            last_indexed_at: null,
+        };
+    }
+}
+/** Query node counts grouped by kind. */
+function queryNodeKindCounts(db, projectId) {
+    try {
+        return typedAll(db, `SELECT kind, COUNT(*) as count
+       FROM nexus_nodes
+       WHERE project_id = ?
+         AND kind NOT IN ('file', 'folder', 'community', 'process')
+       GROUP BY kind
+       ORDER BY count DESC
+       LIMIT 10`, projectId);
+    }
+    catch {
+        return [];
+    }
+}
+/** Query relation counts grouped by type. */
+function queryRelationTypeCounts(db, projectId) {
+    try {
+        return typedAll(db, `SELECT type, COUNT(*) as count
+       FROM nexus_relations
+       WHERE project_id = ?
+         AND type NOT IN ('member_of', 'step_in_process', 'entry_point_of')
+       GROUP BY type
+       ORDER BY count DESC
+       LIMIT 8`, projectId);
+    }
+    catch {
+        return [];
+    }
+}
+/** Query top entry points by outgoing CALLS edge count. */
+function queryTopEntryPoints(db, projectId, limit = 5) {
+    try {
+        return typedAll(db, `SELECT n.name, n.file_path, COUNT(*) as callees, n.is_exported
+       FROM nexus_relations r
+       JOIN nexus_nodes n ON r.source_id = n.id
+       WHERE r.type = 'calls'
+         AND r.project_id = ?
+         AND n.kind IN ('function', 'method', 'constructor')
+       GROUP BY r.source_id
+       ORDER BY callees DESC
+       LIMIT ?`, projectId, limit);
+    }
+    catch {
+        return [];
+    }
+}
+/** Query community nodes ordered by member count. */
+function queryCommunities(db, projectId, limit = 6) {
+    try {
+        return typedAll(db, `SELECT id, label, meta_json, indexed_at
+       FROM nexus_nodes
+       WHERE project_id = ?
+         AND kind = 'community'
+       ORDER BY indexed_at DESC
+       LIMIT ?`, projectId, limit);
+    }
+    catch {
+        return [];
+    }
+}
+/** Query count of execution flow (process) nodes. */
+function queryProcessCount(db, projectId) {
+    try {
+        const row = typedGet(db, `SELECT COUNT(*) as count
+       FROM nexus_nodes
+       WHERE project_id = ?
+         AND kind = 'process'`, projectId);
+        return row?.count ?? 0;
+    }
+    catch {
+        return 0;
+    }
+}
+// ============================================================================
+// Content generation
+// ============================================================================
+/**
+ * Generate nexus bridge markdown content from nexus.db.
+ * Returns the full markdown string (does not write to disk).
+ *
+ * @param projectId - Project registry ID used to scope nexus.db queries
+ * @param repoPath - Absolute path to the repository root (used for display)
+ * @returns Markdown string summarizing the code intelligence index
+ */
+export async function generateNexusBridgeContent(projectId, repoPath) {
+    const { getNexusDb, getNexusNativeDb } = await import('../store/nexus-sqlite.js');
+    // Ensure DB is initialized
+    await getNexusDb();
+    const nativeDb = getNexusNativeDb();
+    if (!nativeDb) {
+        return buildEmptyBridge(repoPath);
+    }
+    // Check whether this project has been indexed at all
+    const meta = queryIndexMeta(nativeDb, projectId);
+    if (meta.total_nodes === 0) {
+        return buildEmptyBridge(repoPath);
+    }
+    const lines = [
+        '# CLEO Nexus Bridge — Code Intelligence',
+        '',
+        `> Auto-generated from nexus index. Regenerate with \`cleo nexus analyze\`.`,
+        `> Project: ${repoPath}`,
+        '',
+    ];
+    // --- Index Status ---
+    const kindCounts = queryNodeKindCounts(nativeDb, projectId);
+    const relCounts = queryRelationTypeCounts(nativeDb, projectId);
+    const processCount = queryProcessCount(nativeDb, projectId);
+    const communities = queryCommunities(nativeDb, projectId);
+    const symbolBreakdown = kindCounts.map((r) => `${r.kind}s: ${r.count}`).join(', ');
+    const callsCount = relCounts.find((r) => r.type === 'calls')?.count ?? 0;
+    const importsCount = relCounts.find((r) => r.type === 'imports')?.count ?? 0;
+    const extendsCount = relCounts.find((r) => r.type === 'extends')?.count ?? 0;
+    const freshnessLabel = meta.last_indexed_at ? meta.last_indexed_at.slice(0, 10) : 'unknown';
+    lines.push('## Index Status');
+    lines.push('');
+    lines.push(`- **Files**: ${meta.file_count.toLocaleString()} indexed`);
+    lines.push(`- **Symbols**: ${meta.total_nodes.toLocaleString()} total${symbolBreakdown ? ` (${symbolBreakdown})` : ''}`);
+    lines.push(`- **Relations**: ${meta.total_relations.toLocaleString()} total (calls: ${callsCount.toLocaleString()}, imports: ${importsCount.toLocaleString()}, extends: ${extendsCount.toLocaleString()})`);
+    lines.push(`- **Communities**: ${communities.length} functional clusters`);
+    lines.push(`- **Execution Flows**: ${processCount} traced processes`);
+    lines.push(`- **Last Indexed**: ${meta.last_indexed_at ?? 'never'}`);
+    lines.push(`- **Date**: ${freshnessLabel}`);
+    lines.push('');
+    // --- Top Entry Points ---
+    const entryPoints = queryTopEntryPoints(nativeDb, projectId);
+    if (entryPoints.length > 0) {
+        lines.push('## Top Entry Points');
+        lines.push('');
+        entryPoints.forEach((ep, i) => {
+            const name = ep.name ?? '(unknown)';
+            const filePath = ep.file_path ?? '';
+            const displayPath = filePath.length > 60 ? `...${filePath.slice(-57)}` : filePath;
+            lines.push(`${i + 1}. \`${name}\` — ${displayPath} (${ep.callees} callees)`);
+        });
+        lines.push('');
+    }
+    // --- Functional Clusters ---
+    if (communities.length > 0) {
+        lines.push('## Functional Clusters');
+        lines.push('');
+        communities.forEach((c, i) => {
+            let symbolCount = 0;
+            let topFolder = '';
+            try {
+                if (c.meta_json) {
+                    const meta = JSON.parse(c.meta_json);
+                    symbolCount = typeof meta['symbolCount'] === 'number' ? meta['symbolCount'] : 0;
+                    const folders = meta['topFolders'];
+                    if (Array.isArray(folders) && folders.length > 0) {
+                        topFolder = String(folders[0]);
+                    }
+                }
+            }
+            catch {
+                // ignore parse errors
+            }
+            const symbolsLabel = symbolCount > 0 ? ` (${symbolCount} symbols)` : '';
+            const folderLabel = topFolder ? ` — ${topFolder}` : '';
+            lines.push(`${i + 1}. **${c.label}**${symbolsLabel}${folderLabel}`);
+        });
+        lines.push('');
+    }
+    // --- Code Intelligence Commands ---
+    lines.push('## Code Intelligence Commands');
+    lines.push('');
+    lines.push('| Need | Command |');
+    lines.push('|------|---------|');
+    lines.push('| What calls this function? | `cleo nexus context <symbol>` |');
+    lines.push('| What breaks if I change this? | `cleo nexus impact <symbol>` |');
+    lines.push('| What functional areas exist? | `cleo nexus clusters` |');
+    lines.push('| What execution flows exist? | `cleo nexus flows` |');
+    lines.push('| Re-index after code changes | `cleo nexus analyze` |');
+    lines.push('| Index freshness check | `cleo nexus status` |');
+    lines.push('');
+    return lines.join('\n');
+}
+/**
+ * Write nexus bridge content to .cleo/nexus-bridge.md.
+ *
+ * @param projectRoot - Absolute path to the project root
+ * @param projectId - Project registry ID (used to scope nexus.db queries)
+ * @returns Result with path and whether the file was written
+ */
+export async function writeNexusBridge(projectRoot, projectId) {
+    const cleoDir = join(projectRoot, '.cleo');
+    const bridgePath = join(cleoDir, 'nexus-bridge.md');
+    // Derive project ID from path if not provided (matches nexus analyze convention)
+    const resolvedProjectId = projectId ?? Buffer.from(projectRoot).toString('base64url').slice(0, 32);
+    try {
+        const content = await generateNexusBridgeContent(resolvedProjectId, projectRoot);
+        if (!existsSync(cleoDir)) {
+            mkdirSync(cleoDir, { recursive: true });
+        }
+        // Only write if content changed (avoid unnecessary git noise)
+        if (existsSync(bridgePath)) {
+            const existing = readFileSync(bridgePath, 'utf-8');
+            // Compare without the date line since it changes daily
+            const stripDate = (s) => s.replace(/^> Date: .*/m, '');
+            if (stripDate(existing) === stripDate(content)) {
+                return { path: bridgePath, written: false };
+            }
+        }
+        writeFileSync(bridgePath, content, 'utf-8');
+        return { path: bridgePath, written: true };
+    }
+    catch (err) {
+        console.error('[CLEO] Failed to write nexus bridge:', err instanceof Error ? err.message : String(err));
+        return { path: bridgePath, written: false };
+    }
+}
+/**
+ * Best-effort nexus bridge refresh. Never throws.
+ * Called after cleo nexus analyze completes.
+ *
+ * @param projectRoot - Absolute path to the project root
+ * @param projectId - Project registry ID (used to scope nexus.db queries)
+ */
+export async function refreshNexusBridge(projectRoot, projectId) {
+    try {
+        await writeNexusBridge(projectRoot, projectId);
+    }
+    catch (err) {
+        console.error('[CLEO] Nexus bridge refresh failed:', err instanceof Error ? err.message : String(err));
+    }
+}
+// ============================================================================
+// Helpers
+// ============================================================================
+/** Build placeholder content when no index data exists. */
+function buildEmptyBridge(repoPath) {
+    return [
+        '# CLEO Nexus Bridge — Code Intelligence',
+        '',
+        `> Auto-generated from nexus index. Regenerate with \`cleo nexus analyze\`.`,
+        `> Project: ${repoPath}`,
+        '',
+        '## Index Status',
+        '',
+        'Not indexed. Run `cleo nexus analyze` to build the code intelligence index.',
+        '',
+        '## Code Intelligence Commands',
+        '',
+        '| Need | Command |',
+        '|------|---------|',
+        '| Build the index | `cleo nexus analyze` |',
+        '| Check index status | `cleo nexus status` |',
+        '| What calls this function? | `cleo nexus context <symbol>` |',
+        '| What breaks if I change this? | `cleo nexus impact <symbol>` |',
+        '| What functional areas exist? | `cleo nexus clusters` |',
+        '| What execution flows exist? | `cleo nexus flows` |',
+        '',
+    ].join('\n');
+}
+//# sourceMappingURL=nexus-bridge.js.map

package/dist/nexus/nexus-bridge.js.map

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package/dist/nexus/permissions.js

@@ -0,0 +1,105 @@
+/**
+ * NEXUS permission enforcement - three-tier access control for cross-project operations.
+ *
+ * Permission model:
+ *   read (1)    - Query tasks, discover relationships
+ *   write (2)   - read + modify task fields, add relationships
+ *   execute (3) - write + create/delete tasks, run commands
+ *
+ * Hierarchical: execute includes write includes read.
+ * Same-project operations always have full permissions.
+ *
+ * @task T4574
+ * @epic T4540
+ */
+import { ExitCode } from '@cleocode/contracts';
+import { CleoError } from '../errors.js';
+import { nexusGetProject, nexusSetPermission } from './registry.js';
+// ── Constants ────────────────────────────────────────────────────────
+const PERMISSION_LEVELS = {
+    read: 1,
+    write: 2,
+    execute: 3,
+};
+// ── Functions ────────────────────────────────────────────────────────
+/**
+ * Convert a permission string to its numeric level.
+ * Returns 0 for invalid/unknown permissions.
+ */
+export function permissionLevel(permission) {
+    return PERMISSION_LEVELS[permission] ?? 0;
+}
+/**
+ * Get the permission level for a registered project.
+ * Returns 'read' as default if the project has no explicit permission.
+ */
+export async function getPermission(nameOrHash) {
+    const project = await nexusGetProject(nameOrHash);
+    if (!project)
+        return 'read';
+    return project.permissions ?? 'read';
+}
+/**
+ * Check if a project has sufficient permissions (non-throwing).
+ * Uses hierarchical comparison: execute >= write >= read.
+ *
+ * @returns true if the granted permission meets or exceeds the required level.
+ */
+export async function checkPermission(nameOrHash, required) {
+    // Test bypass
+    if (process.env['NEXUS_SKIP_PERMISSION_CHECK'] === 'true') {
+        return true;
+    }
+    const granted = await getPermission(nameOrHash);
+    return permissionLevel(granted) >= permissionLevel(required);
+}
+/**
+ * Require a permission level or throw CleoError.
+ * Used as a guard at the start of cross-project operations.
+ */
+export async function requirePermission(nameOrHash, required, operationName = 'operation') {
+    // Test bypass
+    if (process.env['NEXUS_SKIP_PERMISSION_CHECK'] === 'true') {
+        return;
+    }
+    const granted = await getPermission(nameOrHash);
+    if (permissionLevel(granted) < permissionLevel(required)) {
+        throw new CleoError(ExitCode.NEXUS_PERMISSION_DENIED, `Permission denied: '${required}' required for '${operationName}' on project '${nameOrHash}' (granted: ${granted})`);
+    }
+}
+/**
+ * Full permission check returning a structured result.
+ */
+export async function checkPermissionDetail(nameOrHash, required) {
+    const granted = await getPermission(nameOrHash);
+    return {
+        project: nameOrHash,
+        required,
+        granted,
+        allowed: permissionLevel(granted) >= permissionLevel(required),
+    };
+}
+/**
+ * Set the permission level for a project.
+ * Validates the permission value and updates the registry.
+ * @task T4574
+ */
+export async function setPermission(nameOrHash, permission) {
+    if (!nameOrHash) {
+        throw new CleoError(ExitCode.INVALID_INPUT, 'Project name or hash required');
+    }
+    await nexusSetPermission(nameOrHash, permission);
+}
+/** Convenience: check read access. */
+export async function canRead(nameOrHash) {
+    return checkPermission(nameOrHash, 'read');
+}
+/** Convenience: check write access. */
+export async function canWrite(nameOrHash) {
+    return checkPermission(nameOrHash, 'write');
+}
+/** Convenience: check execute access. */
+export async function canExecute(nameOrHash) {
+    return checkPermission(nameOrHash, 'execute');
+}
+//# sourceMappingURL=permissions.js.map

package/dist/nexus/permissions.js.map

@@ -0,0 +1 @@
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package/dist/nexus/query.js

@@ -0,0 +1,175 @@
+/**
+ * NEXUS query parser and resolver - cross-project task references.
+ *
+ * Supports the `project:taskId` syntax:
+ *   - `my-app:T001`  - Named project
+ *   - `.:T001`       - Current project
+ *   - `*:T001`       - Wildcard (all projects)
+ *   - `T001`         - Implicit current project
+ *
+ * @task T4574
+ * @epic T4540
+ */
+import { existsSync, readFileSync } from 'node:fs';
+import { basename, join } from 'node:path';
+import { ExitCode } from '@cleocode/contracts';
+import { CleoError } from '../errors.js';
+import { getAccessor } from '../store/data-accessor.js';
+import { nexusGetProject, readRegistry } from './registry.js';
+// ── Query syntax ─────────────────────────────────────────────────────
+/** Regex for a bare task ID (T followed by 3+ digits). */
+const TASK_ID_RE = /^T\d{3,}$/;
+/** Regex for project:taskId syntax. */
+const QUALIFIED_RE = /^([a-z0-9_-]+|\.|\*):T\d{3,}$/;
+/**
+ * Validate a query string matches expected syntax.
+ */
+export function validateSyntax(query) {
+    if (!query)
+        return false;
+    return TASK_ID_RE.test(query) || QUALIFIED_RE.test(query);
+}
+/**
+ * Parse a query string into its components.
+ * @throws CleoError with NEXUS_INVALID_SYNTAX for bad format.
+ */
+export function parseQuery(query, currentProject) {
+    if (!validateSyntax(query)) {
+        throw new CleoError(ExitCode.NEXUS_INVALID_SYNTAX, `Invalid query syntax: ${query}. Expected: T001, project:T001, .:T001, or *:T001`);
+    }
+    // Check for colon separator
+    const colonIdx = query.indexOf(':');
+    if (colonIdx === -1) {
+        // Bare task ID -- implicit current project
+        const project = currentProject ?? getCurrentProject();
+        return { project, taskId: query, wildcard: false };
+    }
+    const prefix = query.substring(0, colonIdx);
+    const taskId = query.substring(colonIdx + 1);
+    switch (prefix) {
+        case '.': {
+            const project = currentProject ?? getCurrentProject();
+            return { project, taskId, wildcard: false };
+        }
+        case '*':
+            return { project: '*', taskId, wildcard: true };
+        default:
+            return { project: prefix, taskId, wildcard: false };
+    }
+}
+/**
+ * Get the current project name from context.
+ * Reads .cleo/project-info.json or falls back to directory name.
+ */
+export function getCurrentProject() {
+    // Allow test/env override
+    if (process.env['NEXUS_CURRENT_PROJECT']) {
+        return process.env['NEXUS_CURRENT_PROJECT'];
+    }
+    // Try to read from .cleo/project-info.json (matches bash behavior)
+    try {
+        const infoPath = join(process.cwd(), '.cleo', 'project-info.json');
+        if (existsSync(infoPath)) {
+            const data = JSON.parse(readFileSync(infoPath, 'utf-8'));
+            if (typeof data.name === 'string' && data.name.length > 0) {
+                return data.name;
+            }
+        }
+    }
+    catch {
+        // Fall through to directory name
+    }
+    // Fallback to cwd directory name
+    return basename(process.cwd());
+}
+/**
+ * Resolve a project name to its filesystem path.
+ * Handles special cases: "." (current), "*" (wildcard marker).
+ */
+export async function resolveProjectPath(projectName) {
+    if (projectName === '*') {
+        return 'WILDCARD';
+    }
+    if (projectName === '.') {
+        try {
+            const accessor = await getAccessor(process.cwd());
+            const count = await accessor.countTasks();
+            if (count >= 0)
+                return process.cwd();
+            throw new Error('No task data');
+        }
+        catch {
+            throw new CleoError(ExitCode.NEXUS_PROJECT_NOT_FOUND, 'Current directory is not a CLEO project');
+        }
+    }
+    // Look up in registry
+    const project = await nexusGetProject(projectName);
+    if (!project) {
+        throw new CleoError(ExitCode.NEXUS_PROJECT_NOT_FOUND, `Project not found in registry: ${projectName}`, { fix: `cleo nexus register /path/to/project --name ${projectName}` });
+    }
+    return project.path;
+}
+/**
+ * Read tasks from a project's task database.
+ */
+async function readProjectTasks(projectPath) {
+    const tasksDbPath = join(projectPath, '.cleo', 'tasks.db');
+    try {
+        const accessor = await getAccessor(projectPath);
+        const { tasks } = await accessor.queryTasks({});
+        return tasks;
+    }
+    catch {
+        throw new CleoError(ExitCode.NOT_FOUND, `Project task data not found: ${tasksDbPath}`);
+    }
+}
+/**
+ * Resolve a query to task data.
+ * For wildcard queries, returns an array of matches from all projects.
+ * For named projects, returns a single task with project context.
+ */
+export async function resolveTask(query, currentProject) {
+    const parsed = parseQuery(query, currentProject);
+    if (parsed.wildcard) {
+        return resolveWildcard(parsed.taskId);
+    }
+    // Resolve project path
+    const projectPath = await resolveProjectPath(parsed.project);
+    const tasks = await readProjectTasks(projectPath);
+    const task = tasks.find((t) => t.id === parsed.taskId);
+    if (!task) {
+        throw new CleoError(ExitCode.NOT_FOUND, `Task not found: ${parsed.taskId} in project ${parsed.project}`);
+    }
+    return { ...task, _project: parsed.project };
+}
+/**
+ * Search for a task ID across all registered projects.
+ */
+async function resolveWildcard(taskId) {
+    const registry = await readRegistry();
+    if (!registry)
+        return [];
+    const results = [];
+    for (const project of Object.values(registry.projects)) {
+        try {
+            const tasks = await readProjectTasks(project.path);
+            const match = tasks.find((t) => t.id === taskId);
+            if (match) {
+                results.push({ ...match, _project: project.name });
+            }
+        }
+        catch {
+            // Skip projects with unreadable task data
+        }
+    }
+    return results;
+}
+/**
+ * Extract the project name from a query without full resolution.
+ * Useful for permission checks before task lookup.
+ */
+export function getProjectFromQuery(query, currentProject) {
+    const parsed = parseQuery(query, currentProject);
+    return parsed.project;
+}
+//# sourceMappingURL=query.js.map

package/dist/nexus/query.js.map

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