@cleocode/core 2026.4.30 → 2026.4.35

package/dist/memory/graph-auto-populate.js

@@ -0,0 +1,148 @@
+/**
+ * Graph auto-population helpers for CLEO BRAIN.
+ *
+ * Provides upsertGraphNode and addGraphEdge helpers that write to the
+ * brain_page_nodes and brain_page_edges tables whenever memory entries
+ * are created via the legitimate write paths (storeDecision, observeBrain,
+ * storePattern, storeLearning, and task completion).
+ *
+ * Design constraints:
+ * - All writes are BEST-EFFORT — never block or fail the primary operation.
+ * - All writes are gated on brain.autoCapture via isAutoCaptureEnabled.
+ * - Uses INSERT OR REPLACE (onConflictDoUpdate) for upsert semantics.
+ * - Edge inserts are idempotent via the composite PK (fromId, toId, edgeType).
+ *
+ * @task T537
+ * @epic T523
+ */
+import { createHash } from 'node:crypto';
+import { brainPageEdges, brainPageNodes } from '../store/brain-schema.js';
+import { getBrainDb } from '../store/brain-sqlite.js';
+// ---------------------------------------------------------------------------
+// Internal helpers
+// ---------------------------------------------------------------------------
+/**
+ * Return true when brain.autoCapture is enabled for the project.
+ * Delegates to the shared isAutoCaptureEnabled helper in handler-helpers.ts.
+ * Returns false on any error to keep graph writes safely disabled when the
+ * config or brain.db is unavailable.
+ */
+async function shouldAutoPopulateGraph(projectRoot) {
+    try {
+        const { isAutoCaptureEnabled } = await import('../hooks/handlers/handler-helpers.js');
+        return isAutoCaptureEnabled(projectRoot);
+    }
+    catch {
+        return false;
+    }
+}
+// ---------------------------------------------------------------------------
+// Public API
+// ---------------------------------------------------------------------------
+/**
+ * Upsert a graph node for a typed table entry.
+ *
+ * Uses INSERT OR REPLACE to handle both new and existing entries. If the
+ * node already exists (same id), its label, qualityScore, lastActivityAt,
+ * updatedAt, and metadataJson are refreshed while createdAt is preserved.
+ *
+ * The contentHash is derived from a SHA-256 prefix of the canonical content.
+ * External-reference nodes (task, session, epic) may pass an empty string for
+ * content; their hash will be null so duplicates are not rejected.
+ *
+ * This function is gated on brain.autoCapture. If the gate is disabled or any
+ * error occurs, it returns silently without throwing.
+ *
+ * @param projectRoot - Absolute path to the project root directory.
+ * @param nodeId - Stable composite ID in the form '<type>:<source-id>'.
+ * @param nodeType - Discriminated type from BRAIN_NODE_TYPES.
+ * @param label - Human-readable label (title, task ID, etc.).
+ * @param qualityScore - 0.0 (noise) to 1.0 (canonical).
+ * @param content - Canonical text used to derive the content hash.
+ * @param metadata - Optional type-specific metadata blob.
+ *
+ * @task T537
+ */
+export async function upsertGraphNode(projectRoot, nodeId, nodeType, label, qualityScore, content, metadata) {
+    try {
+        if (!(await shouldAutoPopulateGraph(projectRoot)))
+            return;
+        const db = await getBrainDb(projectRoot);
+        const now = new Date().toISOString().replace('T', ' ').slice(0, 19);
+        // Only compute a content hash for non-trivial content (external reference
+        // nodes like task/session/epic may have empty content).
+        const trimmed = content.trim().toLowerCase();
+        const contentHash = trimmed
+            ? createHash('sha256').update(trimmed).digest('hex').substring(0, 16)
+            : null;
+        await db
+            .insert(brainPageNodes)
+            .values({
+            id: nodeId,
+            nodeType,
+            label: label.substring(0, 200),
+            qualityScore,
+            contentHash,
+            metadataJson: metadata ? JSON.stringify(metadata) : null,
+            lastActivityAt: now,
+            createdAt: now,
+            updatedAt: now,
+        })
+            .onConflictDoUpdate({
+            target: brainPageNodes.id,
+            set: {
+                label: label.substring(0, 200),
+                qualityScore,
+                lastActivityAt: now,
+                updatedAt: now,
+                metadataJson: metadata ? JSON.stringify(metadata) : null,
+            },
+        });
+    }
+    catch (err) {
+        // Log but never surface — this is a best-effort side effect.
+        console.warn('[brain-graph] upsertGraphNode failed:', err);
+    }
+}
+/**
+ * Add a directed, typed edge between two graph nodes (idempotent).
+ *
+ * The composite primary key (fromId, toId, edgeType) prevents duplicate edges
+ * of the same type. Conflicting rows are ignored so this is safe to call
+ * multiple times with the same arguments.
+ *
+ * This function is gated on brain.autoCapture. If the gate is disabled or any
+ * error occurs, it returns silently without throwing.
+ *
+ * @param projectRoot - Absolute path to the project root directory.
+ * @param fromId - Source node ID (brain_page_nodes.id).
+ * @param toId - Target node ID (brain_page_nodes.id or external nexus ID).
+ * @param edgeType - Typed relationship from BRAIN_EDGE_TYPES.
+ * @param weight - Edge confidence/weight (0.0–1.0). Defaults to 1.0.
+ * @param provenance - Human-readable note on why this edge was emitted.
+ *
+ * @task T537
+ */
+export async function addGraphEdge(projectRoot, fromId, toId, edgeType, weight = 1.0, provenance) {
+    try {
+        if (!(await shouldAutoPopulateGraph(projectRoot)))
+            return;
+        const db = await getBrainDb(projectRoot);
+        const now = new Date().toISOString().replace('T', ' ').slice(0, 19);
+        await db
+            .insert(brainPageEdges)
+            .values({
+            fromId,
+            toId,
+            edgeType,
+            weight,
+            provenance: provenance ?? null,
+            createdAt: now,
+        })
+            .onConflictDoNothing();
+    }
+    catch (err) {
+        console.warn('[brain-graph] addGraphEdge failed:', err);
+    }
+}
+//# sourceMappingURL=graph-auto-populate.js.map

package/dist/memory/graph-auto-populate.js.map

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package/dist/memory/graph-queries.d.ts

@@ -0,0 +1,127 @@
+/**
+ * Brain graph traversal queries using recursive CTEs and native SQLite.
+ *
+ * Implements BFS traversal, typed neighbor lookup, 360-degree context view,
+ * and aggregate statistics for the brain_page_nodes / brain_page_edges graph
+ * populated by T528 + T530.
+ *
+ * Uses getBrainNativeDb() (DatabaseSync) for recursive CTEs that Drizzle's
+ * ORM layer cannot express directly.
+ *
+ * @task T535
+ * @epic T523
+ */
+import type { BrainEdgeType, BrainPageEdgeRow, BrainPageNodeRow } from '../store/brain-schema.js';
+/** A node returned from a BFS traversal, annotated with its discovery depth. */
+export interface TraceNode extends BrainPageNodeRow {
+    /** Distance from the seed node (0 = seed itself). */
+    depth: number;
+}
+/** A neighbor node with the edge that connects it to the queried node. */
+export interface RelatedNode {
+    /** The neighbour node. */
+    node: BrainPageNodeRow;
+    /** Edge relationship type. */
+    edgeType: BrainEdgeType;
+    /** Direction: 'out' (queried node is from_id) or 'in' (queried node is to_id). */
+    direction: 'out' | 'in';
+    /** Edge weight/confidence 0.0–1.0. */
+    weight: number;
+}
+/** Full context for a single node: itself, incoming edges, outgoing edges, and neighbour nodes. */
+export interface NodeContext {
+    /** The node itself. */
+    node: BrainPageNodeRow;
+    /** Edges where this node is the target (in-edges). */
+    inEdges: BrainPageEdgeRow[];
+    /** Edges where this node is the source (out-edges). */
+    outEdges: BrainPageEdgeRow[];
+    /** All neighbour nodes reachable via in- or out-edges, deduplicated. */
+    neighbors: RelatedNode[];
+}
+/** Aggregate statistics for the graph. */
+export interface GraphStats {
+    /** Node counts grouped by node_type. */
+    nodesByType: Array<{
+        nodeType: string;
+        count: number;
+    }>;
+    /** Edge counts grouped by edge_type. */
+    edgesByType: Array<{
+        edgeType: string;
+        count: number;
+    }>;
+    /** Total node count. */
+    totalNodes: number;
+    /** Total edge count. */
+    totalEdges: number;
+}
+/**
+ * Traverse the brain knowledge graph using BFS from a seed node.
+ *
+ * Uses a recursive CTE that follows edges in both directions. Nodes are
+ * returned in ascending depth order, then descending quality_score. The seed
+ * node itself is returned at depth 0.
+ *
+ * @param projectRoot - Absolute path to the project root (locates brain.db)
+ * @param nodeId      - Starting node ID (format: '<type>:<source-id>')
+ * @param maxDepth    - Maximum traversal depth (default 3)
+ * @returns Array of nodes annotated with their discovery depth
+ *
+ * @example
+ * ```typescript
+ * const nodes = await traceBrainGraph('/project', 'decision:D-abc123', 2);
+ * for (const n of nodes) console.log(n.depth, n.id, n.label);
+ * ```
+ */
+export declare function traceBrainGraph(projectRoot: string, nodeId: string, maxDepth?: number): Promise<TraceNode[]>;
+/**
+ * Return the immediate (1-hop) neighbours of a node, including edge metadata.
+ *
+ * Follows edges in both directions. Results are sorted by edge weight
+ * descending, then quality_score descending.
+ *
+ * @param projectRoot - Absolute path to the project root
+ * @param nodeId      - Node to inspect (format: '<type>:<source-id>')
+ * @param edgeType    - Optional edge type filter (e.g. 'applies_to')
+ * @returns Array of neighbour nodes with edge relationship info
+ *
+ * @example
+ * ```typescript
+ * const related = await relatedBrainNodes('/project', 'decision:D-abc123', 'applies_to');
+ * ```
+ */
+export declare function relatedBrainNodes(projectRoot: string, nodeId: string, edgeType?: string): Promise<RelatedNode[]>;
+/**
+ * Return a 360-degree view of a single graph node.
+ *
+ * Provides the node itself, all incoming edges, all outgoing edges, and the
+ * full set of neighbour nodes with their edge relationships.
+ *
+ * @param projectRoot - Absolute path to the project root
+ * @param nodeId      - Node to inspect (format: '<type>:<source-id>')
+ * @returns Full context record, or null if the node does not exist
+ *
+ * @example
+ * ```typescript
+ * const ctx = await contextBrainNode('/project', 'decision:D-abc123');
+ * if (ctx) {
+ *   console.log(ctx.node.label, ctx.outEdges.length, 'outgoing edges');
+ * }
+ * ```
+ */
+export declare function contextBrainNode(projectRoot: string, nodeId: string): Promise<NodeContext | null>;
+/**
+ * Return aggregate counts for brain_page_nodes and brain_page_edges by type.
+ *
+ * @param projectRoot - Absolute path to the project root
+ * @returns Counts by node type and edge type, plus totals
+ *
+ * @example
+ * ```typescript
+ * const stats = await graphStats('/project');
+ * console.log(stats.totalNodes, stats.totalEdges);
+ * ```
+ */
+export declare function graphStats(projectRoot: string): Promise<GraphStats>;
+//# sourceMappingURL=graph-queries.d.ts.map

package/dist/memory/graph-queries.d.ts.map

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package/dist/memory/graph-queries.js

@@ -0,0 +1,290 @@
+/**
+ * Brain graph traversal queries using recursive CTEs and native SQLite.
+ *
+ * Implements BFS traversal, typed neighbor lookup, 360-degree context view,
+ * and aggregate statistics for the brain_page_nodes / brain_page_edges graph
+ * populated by T528 + T530.
+ *
+ * Uses getBrainNativeDb() (DatabaseSync) for recursive CTEs that Drizzle's
+ * ORM layer cannot express directly.
+ *
+ * @task T535
+ * @epic T523
+ */
+import { getBrainDb, getBrainNativeDb } from '../store/brain-sqlite.js';
+/** Map a snake_case raw row to a camelCase BrainPageNodeRow. */
+function mapNode(raw) {
+    return {
+        id: raw.id,
+        nodeType: raw.node_type,
+        label: raw.label,
+        qualityScore: raw.quality_score,
+        contentHash: raw.content_hash,
+        lastActivityAt: raw.last_activity_at,
+        metadataJson: raw.metadata_json,
+        createdAt: raw.created_at,
+        updatedAt: raw.updated_at,
+    };
+}
+/** Map a snake_case raw row to a camelCase BrainPageEdgeRow. */
+function mapEdge(raw) {
+    return {
+        fromId: raw.from_id,
+        toId: raw.to_id,
+        edgeType: raw.edge_type,
+        weight: raw.weight,
+        provenance: raw.provenance,
+        createdAt: raw.created_at,
+    };
+}
+// ---------------------------------------------------------------------------
+// traceBrainGraph — BFS traversal via recursive CTE
+// ---------------------------------------------------------------------------
+/**
+ * Traverse the brain knowledge graph using BFS from a seed node.
+ *
+ * Uses a recursive CTE that follows edges in both directions. Nodes are
+ * returned in ascending depth order, then descending quality_score. The seed
+ * node itself is returned at depth 0.
+ *
+ * @param projectRoot - Absolute path to the project root (locates brain.db)
+ * @param nodeId      - Starting node ID (format: '<type>:<source-id>')
+ * @param maxDepth    - Maximum traversal depth (default 3)
+ * @returns Array of nodes annotated with their discovery depth
+ *
+ * @example
+ * ```typescript
+ * const nodes = await traceBrainGraph('/project', 'decision:D-abc123', 2);
+ * for (const n of nodes) console.log(n.depth, n.id, n.label);
+ * ```
+ */
+export async function traceBrainGraph(projectRoot, nodeId, maxDepth = 3) {
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb)
+        return [];
+    // Check whether the seed node exists
+    const seedCheck = nativeDb
+        .prepare('SELECT 1 FROM brain_page_nodes WHERE id = ?')
+        .get(nodeId);
+    if (!seedCheck)
+        return [];
+    // Recursive CTE — bidirectional BFS with cycle detection via path string.
+    // The path is '|'-delimited node IDs. We check membership with a LIKE guard.
+    const rows = nativeDb
+        .prepare(`
+    WITH RECURSIVE connected(id, depth, path) AS (
+      SELECT id, 0, id
+      FROM brain_page_nodes
+      WHERE id = ?
+
+      UNION ALL
+
+      SELECT
+        CASE WHEN e.from_id = c.id THEN e.to_id ELSE e.from_id END AS next_id,
+        c.depth + 1,
+        c.path || '|' || CASE WHEN e.from_id = c.id THEN e.to_id ELSE e.from_id END
+      FROM brain_page_edges e
+      JOIN connected c ON (e.from_id = c.id OR e.to_id = c.id)
+      WHERE c.depth < ?
+        AND ('|' || c.path || '|') NOT LIKE (
+          '%|' || CASE WHEN e.from_id = c.id THEN e.to_id ELSE e.from_id END || '|%'
+        )
+    )
+    SELECT DISTINCT n.id, n.node_type, n.label, n.quality_score,
+           n.content_hash, n.last_activity_at, n.metadata_json,
+           n.created_at, n.updated_at,
+           MIN(c.depth) AS depth
+    FROM connected c
+    JOIN brain_page_nodes n ON n.id = c.id
+    GROUP BY n.id
+    ORDER BY depth ASC, n.quality_score DESC
+    `)
+        .all(nodeId, maxDepth);
+    return rows.map((r) => ({ ...mapNode(r), depth: r.depth }));
+}
+// ---------------------------------------------------------------------------
+// relatedBrainNodes — 1-hop neighbours with edge metadata
+// ---------------------------------------------------------------------------
+/**
+ * Return the immediate (1-hop) neighbours of a node, including edge metadata.
+ *
+ * Follows edges in both directions. Results are sorted by edge weight
+ * descending, then quality_score descending.
+ *
+ * @param projectRoot - Absolute path to the project root
+ * @param nodeId      - Node to inspect (format: '<type>:<source-id>')
+ * @param edgeType    - Optional edge type filter (e.g. 'applies_to')
+ * @returns Array of neighbour nodes with edge relationship info
+ *
+ * @example
+ * ```typescript
+ * const related = await relatedBrainNodes('/project', 'decision:D-abc123', 'applies_to');
+ * ```
+ */
+export async function relatedBrainNodes(projectRoot, nodeId, edgeType) {
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb)
+        return [];
+    const edgeFilter = edgeType ? 'AND e.edge_type = ?' : '';
+    // Build params array for the union query
+    // Each half needs: nodeId [, edgeType]
+    const queryParams = edgeType ? [nodeId, edgeType, nodeId, edgeType] : [nodeId, nodeId];
+    // Two unions: outgoing (this node is from_id) and incoming (this node is to_id)
+    const rows = nativeDb
+        .prepare(`
+    SELECT n.id, n.node_type, n.label, n.quality_score,
+           n.content_hash, n.last_activity_at, n.metadata_json,
+           n.created_at, n.updated_at,
+           e.edge_type, e.weight, 'out' AS direction
+    FROM brain_page_edges e
+    JOIN brain_page_nodes n ON n.id = e.to_id
+    WHERE e.from_id = ? ${edgeFilter}
+
+    UNION
+
+    SELECT n.id, n.node_type, n.label, n.quality_score,
+           n.content_hash, n.last_activity_at, n.metadata_json,
+           n.created_at, n.updated_at,
+           e.edge_type, e.weight, 'in' AS direction
+    FROM brain_page_edges e
+    JOIN brain_page_nodes n ON n.id = e.from_id
+    WHERE e.to_id = ? ${edgeFilter}
+
+    ORDER BY weight DESC, quality_score DESC
+    `)
+        .all(...queryParams);
+    return rows.map((r) => ({
+        node: mapNode(r),
+        edgeType: r.edge_type,
+        direction: r.direction,
+        weight: r.weight,
+    }));
+}
+// ---------------------------------------------------------------------------
+// contextBrainNode — 360-degree view of a single node
+// ---------------------------------------------------------------------------
+/**
+ * Return a 360-degree view of a single graph node.
+ *
+ * Provides the node itself, all incoming edges, all outgoing edges, and the
+ * full set of neighbour nodes with their edge relationships.
+ *
+ * @param projectRoot - Absolute path to the project root
+ * @param nodeId      - Node to inspect (format: '<type>:<source-id>')
+ * @returns Full context record, or null if the node does not exist
+ *
+ * @example
+ * ```typescript
+ * const ctx = await contextBrainNode('/project', 'decision:D-abc123');
+ * if (ctx) {
+ *   console.log(ctx.node.label, ctx.outEdges.length, 'outgoing edges');
+ * }
+ * ```
+ */
+export async function contextBrainNode(projectRoot, nodeId) {
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb)
+        return null;
+    const rawNode = nativeDb
+        .prepare(`SELECT id, node_type, label, quality_score, content_hash,
+              last_activity_at, metadata_json, created_at, updated_at
+       FROM brain_page_nodes WHERE id = ?`)
+        .get(nodeId);
+    if (!rawNode)
+        return null;
+    const node = mapNode(rawNode);
+    const rawOutEdges = nativeDb
+        .prepare(`SELECT from_id, to_id, edge_type, weight, provenance, created_at
+       FROM brain_page_edges WHERE from_id = ? ORDER BY weight DESC`)
+        .all(nodeId);
+    const rawInEdges = nativeDb
+        .prepare(`SELECT from_id, to_id, edge_type, weight, provenance, created_at
+       FROM brain_page_edges WHERE to_id = ? ORDER BY weight DESC`)
+        .all(nodeId);
+    const outEdges = rawOutEdges.map(mapEdge);
+    const inEdges = rawInEdges.map(mapEdge);
+    // Collect unique neighbour IDs from both directions
+    const seenIds = new Set([nodeId]);
+    const neighbors = [];
+    for (const e of rawOutEdges) {
+        if (!seenIds.has(e.to_id)) {
+            seenIds.add(e.to_id);
+            const rawNeighbour = nativeDb
+                .prepare(`SELECT id, node_type, label, quality_score, content_hash,
+                  last_activity_at, metadata_json, created_at, updated_at
+           FROM brain_page_nodes WHERE id = ?`)
+                .get(e.to_id);
+            if (rawNeighbour) {
+                neighbors.push({
+                    node: mapNode(rawNeighbour),
+                    edgeType: e.edge_type,
+                    direction: 'out',
+                    weight: e.weight,
+                });
+            }
+        }
+    }
+    for (const e of rawInEdges) {
+        if (!seenIds.has(e.from_id)) {
+            seenIds.add(e.from_id);
+            const rawNeighbour = nativeDb
+                .prepare(`SELECT id, node_type, label, quality_score, content_hash,
+                  last_activity_at, metadata_json, created_at, updated_at
+           FROM brain_page_nodes WHERE id = ?`)
+                .get(e.from_id);
+            if (rawNeighbour) {
+                neighbors.push({
+                    node: mapNode(rawNeighbour),
+                    edgeType: e.edge_type,
+                    direction: 'in',
+                    weight: e.weight,
+                });
+            }
+        }
+    }
+    // Sort neighbours by weight descending
+    neighbors.sort((a, b) => b.weight - a.weight);
+    return { node, inEdges, outEdges, neighbors };
+}
+// ---------------------------------------------------------------------------
+// graphStats — aggregate counts by type
+// ---------------------------------------------------------------------------
+/**
+ * Return aggregate counts for brain_page_nodes and brain_page_edges by type.
+ *
+ * @param projectRoot - Absolute path to the project root
+ * @returns Counts by node type and edge type, plus totals
+ *
+ * @example
+ * ```typescript
+ * const stats = await graphStats('/project');
+ * console.log(stats.totalNodes, stats.totalEdges);
+ * ```
+ */
+export async function graphStats(projectRoot) {
+    await getBrainDb(projectRoot);
+    const nativeDb = getBrainNativeDb();
+    if (!nativeDb) {
+        return { nodesByType: [], edgesByType: [], totalNodes: 0, totalEdges: 0 };
+    }
+    const nodeRows = nativeDb
+        .prepare(`SELECT node_type, COUNT(*) AS count
+       FROM brain_page_nodes GROUP BY node_type ORDER BY count DESC`)
+        .all();
+    const edgeRows = nativeDb
+        .prepare(`SELECT edge_type, COUNT(*) AS count
+       FROM brain_page_edges GROUP BY edge_type ORDER BY count DESC`)
+        .all();
+    const totalNodes = nodeRows.reduce((s, r) => s + r.count, 0);
+    const totalEdges = edgeRows.reduce((s, r) => s + r.count, 0);
+    return {
+        nodesByType: nodeRows.map((r) => ({ nodeType: r.node_type, count: r.count })),
+        edgesByType: edgeRows.map((r) => ({ edgeType: r.edge_type, count: r.count })),
+        totalNodes,
+        totalEdges,
+    };
+}
+//# sourceMappingURL=graph-queries.js.map

package/dist/memory/graph-queries.js.map

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package/dist/memory/index.d.ts

@@ -707,12 +707,14 @@ export declare function validateManifestEntries(taskId: string, cwd?: string): P
     errorCount: number;
     warningCount: number;
 }>;
+export * from './brain-consolidator.js';
 export * from './brain-lifecycle.js';
 export * from './brain-links.js';
 export * from './brain-migration.js';
 export * from './brain-retrieval.js';
 export * from './brain-search.js';
 export * from './decisions.js';
+export * from './extraction-gate.js';
 export * from './learnings.js';
 export * from './patterns.js';
 //# sourceMappingURL=index.d.ts.map

package/dist/memory/index.d.ts.map

@@ -1 +1 @@
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