@cleocode/core 2026.4.30 → 2026.4.35

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1039) hide show
  1. package/dist/adapters/adapter-registry.js +64 -0
  2. package/dist/adapters/adapter-registry.js.map +1 -0
  3. package/dist/adapters/discovery.js +83 -0
  4. package/dist/adapters/discovery.js.map +1 -0
  5. package/dist/adapters/index.js +9 -0
  6. package/dist/adapters/index.js.map +1 -0
  7. package/dist/adapters/manager.js +260 -0
  8. package/dist/adapters/manager.js.map +1 -0
  9. package/dist/admin/export-tasks.js +171 -0
  10. package/dist/admin/export-tasks.js.map +1 -0
  11. package/dist/admin/export.js +103 -0
  12. package/dist/admin/export.js.map +1 -0
  13. package/dist/admin/help.js +106 -0
  14. package/dist/admin/help.js.map +1 -0
  15. package/dist/admin/import-tasks.js +182 -0
  16. package/dist/admin/import-tasks.js.map +1 -0
  17. package/dist/admin/import.js +129 -0
  18. package/dist/admin/import.js.map +1 -0
  19. package/dist/admin/index.js +13 -0
  20. package/dist/admin/index.js.map +1 -0
  21. package/dist/adrs/find.js +134 -0
  22. package/dist/adrs/find.js.map +1 -0
  23. package/dist/adrs/index.js +15 -0
  24. package/dist/adrs/index.js.map +1 -0
  25. package/dist/adrs/link-pipeline.js +160 -0
  26. package/dist/adrs/link-pipeline.js.map +1 -0
  27. package/dist/adrs/list.js +43 -0
  28. package/dist/adrs/list.js.map +1 -0
  29. package/dist/adrs/parse.js +51 -0
  30. package/dist/adrs/parse.js.map +1 -0
  31. package/dist/adrs/show.js +22 -0
  32. package/dist/adrs/show.js.map +1 -0
  33. package/dist/adrs/sync.js +232 -0
  34. package/dist/adrs/sync.js.map +1 -0
  35. package/dist/adrs/types.js +9 -0
  36. package/dist/adrs/types.js.map +1 -0
  37. package/dist/adrs/validate.js +57 -0
  38. package/dist/adrs/validate.js.map +1 -0
  39. package/dist/agents/agent-registry.js +288 -0
  40. package/dist/agents/agent-registry.js.map +1 -0
  41. package/dist/agents/agent-schema.js +82 -0
  42. package/dist/agents/agent-schema.js.map +1 -0
  43. package/dist/agents/capacity.js +116 -0
  44. package/dist/agents/capacity.js.map +1 -0
  45. package/dist/agents/execution-learning.js +474 -0
  46. package/dist/agents/execution-learning.js.map +1 -0
  47. package/dist/agents/health-monitor.js +217 -0
  48. package/dist/agents/health-monitor.js.map +1 -0
  49. package/dist/agents/index.js +29 -0
  50. package/dist/agents/index.js.map +1 -0
  51. package/dist/agents/registry.js +314 -0
  52. package/dist/agents/registry.js.map +1 -0
  53. package/dist/agents/retry.js +215 -0
  54. package/dist/agents/retry.js.map +1 -0
  55. package/dist/audit-prune.js +94 -0
  56. package/dist/audit-prune.js.map +1 -0
  57. package/dist/audit.js +68 -0
  58. package/dist/audit.js.map +1 -0
  59. package/dist/backfill/index.js +229 -0
  60. package/dist/backfill/index.js.map +1 -0
  61. package/dist/bootstrap.d.ts +35 -0
  62. package/dist/bootstrap.d.ts.map +1 -1
  63. package/dist/bootstrap.js +435 -0
  64. package/dist/bootstrap.js.map +1 -0
  65. package/dist/caamp/adapter.js +259 -0
  66. package/dist/caamp/adapter.js.map +1 -0
  67. package/dist/caamp/capability-check.js +38 -0
  68. package/dist/caamp/capability-check.js.map +1 -0
  69. package/dist/caamp/index.js +21 -0
  70. package/dist/caamp/index.js.map +1 -0
  71. package/dist/caamp-init.js +16 -0
  72. package/dist/caamp-init.js.map +1 -0
  73. package/dist/cleo.js +322 -0
  74. package/dist/cleo.js.map +1 -0
  75. package/dist/code/index.d.ts +8 -4
  76. package/dist/code/index.d.ts.map +1 -1
  77. package/dist/code/index.js +14 -0
  78. package/dist/code/index.js.map +1 -0
  79. package/dist/code/outline.js +165 -0
  80. package/dist/code/outline.js.map +1 -0
  81. package/dist/code/parser.d.ts +22 -9
  82. package/dist/code/parser.d.ts.map +1 -1
  83. package/dist/code/parser.js +420 -0
  84. package/dist/code/parser.js.map +1 -0
  85. package/dist/code/search.js +135 -0
  86. package/dist/code/search.js.map +1 -0
  87. package/dist/code/unfold.js +155 -0
  88. package/dist/code/unfold.js.map +1 -0
  89. package/dist/codebase-map/analyzers/architecture.js +129 -0
  90. package/dist/codebase-map/analyzers/architecture.js.map +1 -0
  91. package/dist/codebase-map/analyzers/concerns.js +122 -0
  92. package/dist/codebase-map/analyzers/concerns.js.map +1 -0
  93. package/dist/codebase-map/analyzers/conventions.js +149 -0
  94. package/dist/codebase-map/analyzers/conventions.js.map +1 -0
  95. package/dist/codebase-map/analyzers/integrations.js +108 -0
  96. package/dist/codebase-map/analyzers/integrations.js.map +1 -0
  97. package/dist/codebase-map/analyzers/stack.js +117 -0
  98. package/dist/codebase-map/analyzers/stack.js.map +1 -0
  99. package/dist/codebase-map/analyzers/structure.js +137 -0
  100. package/dist/codebase-map/analyzers/structure.js.map +1 -0
  101. package/dist/codebase-map/analyzers/testing.js +118 -0
  102. package/dist/codebase-map/analyzers/testing.js.map +1 -0
  103. package/dist/codebase-map/index.js +57 -0
  104. package/dist/codebase-map/index.js.map +1 -0
  105. package/dist/codebase-map/store.js +122 -0
  106. package/dist/codebase-map/store.js.map +1 -0
  107. package/dist/codebase-map/summary.js +152 -0
  108. package/dist/codebase-map/summary.js.map +1 -0
  109. package/dist/compliance/index.js +288 -0
  110. package/dist/compliance/index.js.map +1 -0
  111. package/dist/compliance/protocol-enforcement.js +332 -0
  112. package/dist/compliance/protocol-enforcement.js.map +1 -0
  113. package/dist/compliance/protocol-rules.js +786 -0
  114. package/dist/compliance/protocol-rules.js.map +1 -0
  115. package/dist/compliance/protocol-types.js +79 -0
  116. package/dist/compliance/protocol-types.js.map +1 -0
  117. package/dist/compliance/store.js +53 -0
  118. package/dist/compliance/store.js.map +1 -0
  119. package/dist/conduit/conduit-client.js +107 -0
  120. package/dist/conduit/conduit-client.js.map +1 -0
  121. package/dist/conduit/factory.js +52 -0
  122. package/dist/conduit/factory.js.map +1 -0
  123. package/dist/conduit/http-transport.js +155 -0
  124. package/dist/conduit/http-transport.js.map +1 -0
  125. package/dist/conduit/index.js +15 -0
  126. package/dist/conduit/index.js.map +1 -0
  127. package/dist/conduit/local-transport.js +255 -0
  128. package/dist/conduit/local-transport.js.map +1 -0
  129. package/dist/conduit/sse-transport.js +299 -0
  130. package/dist/conduit/sse-transport.js.map +1 -0
  131. package/dist/config/build-config.js +29 -0
  132. package/dist/config/build-config.js.map +1 -0
  133. package/dist/config.js +400 -0
  134. package/dist/config.js.map +1 -0
  135. package/dist/constants.js +18 -0
  136. package/dist/constants.js.map +1 -0
  137. package/dist/context/index.js +137 -0
  138. package/dist/context/index.js.map +1 -0
  139. package/dist/crypto/credentials.js +219 -0
  140. package/dist/crypto/credentials.js.map +1 -0
  141. package/dist/discovery.js +182 -0
  142. package/dist/discovery.js.map +1 -0
  143. package/dist/engine-result.js +12 -0
  144. package/dist/engine-result.js.map +1 -0
  145. package/dist/error-catalog.js +404 -0
  146. package/dist/error-catalog.js.map +1 -0
  147. package/dist/error-registry.js +393 -0
  148. package/dist/error-registry.js.map +1 -0
  149. package/dist/errors.js +173 -0
  150. package/dist/errors.js.map +1 -0
  151. package/dist/hooks/handlers/agent-hooks.js +106 -0
  152. package/dist/hooks/handlers/agent-hooks.js.map +1 -0
  153. package/dist/hooks/handlers/context-hooks.js +111 -0
  154. package/dist/hooks/handlers/context-hooks.js.map +1 -0
  155. package/dist/hooks/handlers/error-hooks.js +52 -0
  156. package/dist/hooks/handlers/error-hooks.js.map +1 -0
  157. package/dist/hooks/handlers/file-hooks.js +104 -0
  158. package/dist/hooks/handlers/file-hooks.js.map +1 -0
  159. package/dist/hooks/handlers/handler-helpers.js +61 -0
  160. package/dist/hooks/handlers/handler-helpers.js.map +1 -0
  161. package/dist/hooks/handlers/index.d.ts +4 -0
  162. package/dist/hooks/handlers/index.d.ts.map +1 -1
  163. package/dist/hooks/handlers/index.js +34 -0
  164. package/dist/hooks/handlers/index.js.map +1 -0
  165. package/dist/hooks/handlers/intelligence-hooks.d.ts +26 -0
  166. package/dist/hooks/handlers/intelligence-hooks.d.ts.map +1 -0
  167. package/dist/hooks/handlers/intelligence-hooks.js +69 -0
  168. package/dist/hooks/handlers/intelligence-hooks.js.map +1 -0
  169. package/dist/hooks/handlers/memory-bridge-refresh.js +42 -0
  170. package/dist/hooks/handlers/memory-bridge-refresh.js.map +1 -0
  171. package/dist/hooks/handlers/notification-hooks.js +62 -0
  172. package/dist/hooks/handlers/notification-hooks.js.map +1 -0
  173. package/dist/hooks/handlers/session-hooks.d.ts +27 -4
  174. package/dist/hooks/handlers/session-hooks.d.ts.map +1 -1
  175. package/dist/hooks/handlers/session-hooks.js +157 -0
  176. package/dist/hooks/handlers/session-hooks.js.map +1 -0
  177. package/dist/hooks/handlers/task-hooks.js +65 -0
  178. package/dist/hooks/handlers/task-hooks.js.map +1 -0
  179. package/dist/hooks/handlers/watchdog-hooks.d.ts +49 -0
  180. package/dist/hooks/handlers/watchdog-hooks.d.ts.map +1 -0
  181. package/dist/hooks/handlers/watchdog-hooks.js +162 -0
  182. package/dist/hooks/handlers/watchdog-hooks.js.map +1 -0
  183. package/dist/hooks/handlers/work-capture-hooks.js +165 -0
  184. package/dist/hooks/handlers/work-capture-hooks.js.map +1 -0
  185. package/dist/hooks/index.js +13 -0
  186. package/dist/hooks/index.js.map +1 -0
  187. package/dist/hooks/payload-schemas.d.ts +6 -6
  188. package/dist/hooks/payload-schemas.js +220 -0
  189. package/dist/hooks/payload-schemas.js.map +1 -0
  190. package/dist/hooks/provider-hooks.js +66 -0
  191. package/dist/hooks/provider-hooks.js.map +1 -0
  192. package/dist/hooks/registry.js +229 -0
  193. package/dist/hooks/registry.js.map +1 -0
  194. package/dist/hooks/types.js +66 -0
  195. package/dist/hooks/types.js.map +1 -0
  196. package/dist/hooks.js +136 -0
  197. package/dist/hooks.js.map +1 -0
  198. package/dist/index.d.ts +2 -0
  199. package/dist/index.d.ts.map +1 -1
  200. package/dist/index.js +8765 -6253
  201. package/dist/index.js.map +4 -4
  202. package/dist/init.js +920 -0
  203. package/dist/init.js.map +1 -0
  204. package/dist/inject/index.js +82 -0
  205. package/dist/inject/index.js.map +1 -0
  206. package/dist/injection.d.ts +13 -1
  207. package/dist/injection.d.ts.map +1 -1
  208. package/dist/injection.js +377 -0
  209. package/dist/injection.js.map +1 -0
  210. package/dist/intelligence/adaptive-validation.js +497 -0
  211. package/dist/intelligence/adaptive-validation.js.map +1 -0
  212. package/dist/intelligence/impact.js +675 -0
  213. package/dist/intelligence/impact.js.map +1 -0
  214. package/dist/intelligence/index.js +22 -0
  215. package/dist/intelligence/index.js.map +1 -0
  216. package/dist/intelligence/patterns.js +492 -0
  217. package/dist/intelligence/patterns.js.map +1 -0
  218. package/dist/intelligence/prediction.js +499 -0
  219. package/dist/intelligence/prediction.js.map +1 -0
  220. package/dist/intelligence/types.js +13 -0
  221. package/dist/intelligence/types.js.map +1 -0
  222. package/dist/internal.d.ts +18 -10
  223. package/dist/internal.d.ts.map +1 -1
  224. package/dist/internal.js +320 -0
  225. package/dist/internal.js.map +1 -0
  226. package/dist/issue/create.js +121 -0
  227. package/dist/issue/create.js.map +1 -0
  228. package/dist/issue/diagnostics.js +59 -0
  229. package/dist/issue/diagnostics.js.map +1 -0
  230. package/dist/issue/index.js +10 -0
  231. package/dist/issue/index.js.map +1 -0
  232. package/dist/issue/template-parser.js +267 -0
  233. package/dist/issue/template-parser.js.map +1 -0
  234. package/dist/json-schema-validator.js +76 -0
  235. package/dist/json-schema-validator.js.map +1 -0
  236. package/dist/lib/index.js +11 -0
  237. package/dist/lib/index.js.map +1 -0
  238. package/dist/lib/retry.js +152 -0
  239. package/dist/lib/retry.js.map +1 -0
  240. package/dist/lib/tree-sitter-languages.d.ts +11 -7
  241. package/dist/lib/tree-sitter-languages.d.ts.map +1 -1
  242. package/dist/lib/tree-sitter-languages.js +75 -0
  243. package/dist/lib/tree-sitter-languages.js.map +1 -0
  244. package/dist/lifecycle/chain-composition.js +152 -0
  245. package/dist/lifecycle/chain-composition.js.map +1 -0
  246. package/dist/lifecycle/chain-store.js +246 -0
  247. package/dist/lifecycle/chain-store.js.map +1 -0
  248. package/dist/lifecycle/consolidate-rcasd.js +352 -0
  249. package/dist/lifecycle/consolidate-rcasd.js.map +1 -0
  250. package/dist/lifecycle/default-chain.js +176 -0
  251. package/dist/lifecycle/default-chain.js.map +1 -0
  252. package/dist/lifecycle/evidence.js +180 -0
  253. package/dist/lifecycle/evidence.js.map +1 -0
  254. package/dist/lifecycle/frontmatter.js +363 -0
  255. package/dist/lifecycle/frontmatter.js.map +1 -0
  256. package/dist/lifecycle/index.js +756 -0
  257. package/dist/lifecycle/index.js.map +1 -0
  258. package/dist/lifecycle/pipeline.js +656 -0
  259. package/dist/lifecycle/pipeline.js.map +1 -0
  260. package/dist/lifecycle/rcasd-index.js +326 -0
  261. package/dist/lifecycle/rcasd-index.js.map +1 -0
  262. package/dist/lifecycle/rcasd-paths.js +220 -0
  263. package/dist/lifecycle/rcasd-paths.js.map +1 -0
  264. package/dist/lifecycle/resume.js +864 -0
  265. package/dist/lifecycle/resume.js.map +1 -0
  266. package/dist/lifecycle/stage-artifacts.js +94 -0
  267. package/dist/lifecycle/stage-artifacts.js.map +1 -0
  268. package/dist/lifecycle/stage-guidance.js +234 -0
  269. package/dist/lifecycle/stage-guidance.js.map +1 -0
  270. package/dist/lifecycle/stages.js +534 -0
  271. package/dist/lifecycle/stages.js.map +1 -0
  272. package/dist/lifecycle/state-machine.js +516 -0
  273. package/dist/lifecycle/state-machine.js.map +1 -0
  274. package/dist/lifecycle/tessera-engine.js +249 -0
  275. package/dist/lifecycle/tessera-engine.js.map +1 -0
  276. package/dist/logger.js +140 -0
  277. package/dist/logger.js.map +1 -0
  278. package/dist/memory/auto-extract.d.ts +27 -15
  279. package/dist/memory/auto-extract.d.ts.map +1 -1
  280. package/dist/memory/auto-extract.js +96 -0
  281. package/dist/memory/auto-extract.js.map +1 -0
  282. package/dist/memory/brain-backfill.d.ts +59 -0
  283. package/dist/memory/brain-backfill.d.ts.map +1 -0
  284. package/dist/memory/brain-backfill.js +389 -0
  285. package/dist/memory/brain-backfill.js.map +1 -0
  286. package/dist/memory/brain-consolidator.d.ts +48 -0
  287. package/dist/memory/brain-consolidator.d.ts.map +1 -0
  288. package/dist/memory/brain-consolidator.js +294 -0
  289. package/dist/memory/brain-consolidator.js.map +1 -0
  290. package/dist/memory/brain-embedding.js +66 -0
  291. package/dist/memory/brain-embedding.js.map +1 -0
  292. package/dist/memory/brain-lifecycle.d.ts +83 -2
  293. package/dist/memory/brain-lifecycle.d.ts.map +1 -1
  294. package/dist/memory/brain-lifecycle.js +807 -0
  295. package/dist/memory/brain-lifecycle.js.map +1 -0
  296. package/dist/memory/brain-links.js +161 -0
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  298. package/dist/memory/brain-maintenance.js +114 -0
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  300. package/dist/memory/brain-migration.js +149 -0
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  302. package/dist/memory/brain-purge.d.ts +51 -0
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  308. package/dist/memory/brain-retrieval.d.ts +69 -1
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  312. package/dist/memory/brain-row-types.js +10 -0
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  314. package/dist/memory/brain-search.d.ts.map +1 -1
  315. package/dist/memory/brain-search.js +528 -0
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  317. package/dist/memory/brain-similarity.js +145 -0
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  319. package/dist/memory/claude-mem-migration.js +277 -0
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  330. package/dist/memory/engine-compat.d.ts +71 -0
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  334. package/dist/memory/extraction-gate.d.ts +139 -0
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  338. package/dist/memory/graph-auto-populate.d.ts +65 -0
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  342. package/dist/memory/graph-queries.d.ts +127 -0
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  346. package/dist/memory/index.d.ts +2 -0
  347. package/dist/memory/index.d.ts.map +1 -1
  348. package/dist/memory/index.js +1144 -0
  349. package/dist/memory/index.js.map +1 -0
  350. package/dist/memory/learnings.d.ts +16 -0
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  360. package/dist/memory/patterns.d.ts +26 -4
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  364. package/dist/memory/pipeline-manifest-sqlite.js +975 -0
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  366. package/dist/memory/quality-scoring.d.ts +127 -0
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  370. package/dist/memory/session-memory.js +331 -0
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@@ -0,0 +1,315 @@
1
+ /**
2
+ * Brain.db noise purge utility — removes 2927 noise entries leaving ~57 signal entries.
3
+ *
4
+ * Purge rules:
5
+ * - Patterns: keep newest per unique pattern text (dedup), delete duplicates
6
+ * - Learnings: delete ALL (all are auto-generated task completion noise)
7
+ * - Decisions: delete ALL except D-mntpeeer (the one real architectural decision)
8
+ * - Observations: delete task-start/task-complete/session-note/test/junk noise
9
+ *
10
+ * Safety: requires backup to exist before calling. Never touches tasks.db.
11
+ *
12
+ * @task T524
13
+ * @epic T523
14
+ */
15
+
16
+ import { inArray, ne, sql } from 'drizzle-orm';
17
+ import {
18
+ brainDecisions,
19
+ brainLearnings,
20
+ brainObservations,
21
+ brainPatterns,
22
+ } from '../store/brain-schema.js';
23
+ import { getBrainDb, getBrainNativeDb } from '../store/brain-sqlite.js';
24
+ import { ensureFts5Tables, rebuildFts5Index } from './brain-search.js';
25
+
26
+ /** Result counts from a purge run. */
27
+ export interface PurgeResult {
28
+ /** Number of pattern rows deleted. */
29
+ patternsDeleted: number;
30
+ /** Number of learning rows deleted. */
31
+ learningsDeleted: number;
32
+ /** Number of decision rows deleted. */
33
+ decisionsDeleted: number;
34
+ /** Number of observation rows deleted. */
35
+ observationsDeleted: number;
36
+ /** Counts after purge. */
37
+ after: {
38
+ patterns: number;
39
+ learnings: number;
40
+ decisions: number;
41
+ observations: number;
42
+ };
43
+ /** FTS5 indexes rebuilt. */
44
+ fts5Rebuilt: boolean;
45
+ }
46
+
47
+ /**
48
+ * Count rows in a table using native DB PRAGMA (avoids Drizzle type issues).
49
+ * Falls back to 0 on error.
50
+ */
51
+ function countRowsNative(tableName: string): number {
52
+ const nativeDb = getBrainNativeDb();
53
+ if (!nativeDb) return 0;
54
+ try {
55
+ const row = nativeDb.prepare(`SELECT COUNT(*) AS cnt FROM ${tableName}`).get() as
56
+ | { cnt: number }
57
+ | undefined;
58
+ return row?.cnt ?? 0;
59
+ } catch {
60
+ return 0;
61
+ }
62
+ }
63
+
64
+ /**
65
+ * Execute the brain.db noise purge.
66
+ *
67
+ * Deletes ~2927 noise entries across four tables, leaving ~57 signal entries.
68
+ * The one real architectural decision (D-mntpeeer) is explicitly preserved.
69
+ *
70
+ * Rules applied in order:
71
+ * 1. Patterns: deduplicate by pattern text — keep newest per unique text, delete older dupes
72
+ * 2. Learnings: delete all (100% noise — auto-generated "Completed:" and dependency notices)
73
+ * 3. Decisions: delete all except D-mntpeeer
74
+ * 4. Observations: delete task-start, task-complete, session-note, and test/junk entries
75
+ *
76
+ * @param projectRoot - Absolute path to the project root (e.g. /mnt/projects/cleocode)
77
+ * @returns PurgeResult with before/after counts and FTS5 status
78
+ */
79
+ export async function purgeBrainNoise(projectRoot: string): Promise<PurgeResult> {
80
+ const db = await getBrainDb(projectRoot);
81
+
82
+ // =========================================================================
83
+ // Pre-purge counts
84
+ // =========================================================================
85
+
86
+ const beforePatterns = countRowsNative('brain_patterns');
87
+ const beforeLearnings = countRowsNative('brain_learnings');
88
+ const beforeDecisions = countRowsNative('brain_decisions');
89
+ const beforeObservations = countRowsNative('brain_observations');
90
+
91
+ console.log('Pre-purge counts:');
92
+ console.log(` Patterns: ${beforePatterns}`);
93
+ console.log(` Learnings: ${beforeLearnings}`);
94
+ console.log(` Decisions: ${beforeDecisions}`);
95
+ console.log(` Observations: ${beforeObservations}`);
96
+
97
+ // =========================================================================
98
+ // SAFETY: Confirm D-mntpeeer exists before any destructive operation
99
+ // =========================================================================
100
+
101
+ const realDecision = await db.select().from(brainDecisions).where(sql`id = 'D-mntpeeer'`);
102
+
103
+ if (realDecision.length === 0) {
104
+ throw new Error(
105
+ 'SAFETY ABORT: D-mntpeeer not found in brain_decisions. Backup and restore required.',
106
+ );
107
+ }
108
+
109
+ console.log('Safety check passed: D-mntpeeer confirmed present');
110
+
111
+ // =========================================================================
112
+ // Rule 1: Pattern deduplication
113
+ // Strategy: for each unique pattern text, find the MAX(extracted_at) row,
114
+ // delete all other rows with the same text.
115
+ // =========================================================================
116
+
117
+ // Get all patterns to find duplicates in TS (safer than raw SQL subquery)
118
+ const allPatterns = await db.select().from(brainPatterns);
119
+
120
+ // Group by normalized pattern text
121
+ const patternGroups = new Map<string, typeof allPatterns>();
122
+ for (const p of allPatterns) {
123
+ const key = p.pattern.trim().toLowerCase();
124
+ const group = patternGroups.get(key) ?? [];
125
+ group.push(p);
126
+ patternGroups.set(key, group);
127
+ }
128
+
129
+ // Collect IDs to delete: for each group with >1 entry, keep newest (max extractedAt), delete rest
130
+ const patternIdsToDelete: string[] = [];
131
+ for (const [, group] of patternGroups) {
132
+ if (group.length <= 1) continue;
133
+ // Sort by extractedAt desc, keep first, delete the rest
134
+ group.sort((a, b) => (b.extractedAt > a.extractedAt ? 1 : -1));
135
+ const toDelete = group.slice(1).map((p) => p.id);
136
+ patternIdsToDelete.push(...toDelete);
137
+ }
138
+
139
+ let patternsDeleted = 0;
140
+ if (patternIdsToDelete.length > 0) {
141
+ // Delete in batches of 500 to avoid SQLite parameter limits
142
+ const BATCH = 500;
143
+ for (let i = 0; i < patternIdsToDelete.length; i += BATCH) {
144
+ const batch = patternIdsToDelete.slice(i, i + BATCH);
145
+ await db.delete(brainPatterns).where(inArray(brainPatterns.id, batch));
146
+ patternsDeleted += batch.length;
147
+ }
148
+ }
149
+
150
+ console.log(`Patterns deleted (dedup): ${patternsDeleted}`);
151
+
152
+ // =========================================================================
153
+ // Rule 2: Delete ALL learnings (100% noise)
154
+ // All learnings are auto-generated "Completed: T..." or dependency notices
155
+ // =========================================================================
156
+
157
+ // Count before delete using run
158
+ const learningsRows = await db.select().from(brainLearnings);
159
+ const learningsDeleted = learningsRows.length;
160
+
161
+ if (learningsDeleted > 0) {
162
+ // Delete in batches using IDs
163
+ const ids = learningsRows.map((r) => r.id);
164
+ const BATCH = 500;
165
+ for (let i = 0; i < ids.length; i += BATCH) {
166
+ const batch = ids.slice(i, i + BATCH);
167
+ await db.delete(brainLearnings).where(inArray(brainLearnings.id, batch));
168
+ }
169
+ }
170
+
171
+ console.log(`Learnings deleted (all): ${learningsDeleted}`);
172
+
173
+ // =========================================================================
174
+ // Rule 3: Delete ALL decisions EXCEPT D-mntpeeer
175
+ // =========================================================================
176
+
177
+ const decisionsToDelete = await db
178
+ .select()
179
+ .from(brainDecisions)
180
+ .where(ne(brainDecisions.id, 'D-mntpeeer'));
181
+
182
+ const decisionsDeleted = decisionsToDelete.length;
183
+ if (decisionsDeleted > 0) {
184
+ const ids = decisionsToDelete.map((r) => r.id);
185
+ await db.delete(brainDecisions).where(inArray(brainDecisions.id, ids));
186
+ }
187
+
188
+ console.log(`Decisions deleted (all except D-mntpeeer): ${decisionsDeleted}`);
189
+
190
+ // =========================================================================
191
+ // Rule 4: Delete noise observations
192
+ // Keep: real release notes, real codebase analysis, real session handoffs
193
+ // Delete: task-start, task-complete, session-note, test/junk entries
194
+ // =========================================================================
195
+
196
+ // Collect all observations to classify them
197
+ const allObservations = await db.select().from(brainObservations);
198
+
199
+ const obsIdsToDelete: string[] = [];
200
+
201
+ for (const obs of allObservations) {
202
+ const title = obs.title ?? '';
203
+ const narrative = (obs.narrative ?? '').toLowerCase();
204
+ const titleLower = title.toLowerCase();
205
+
206
+ // Rule 4a: Task lifecycle noise
207
+ if (
208
+ title.startsWith('Task start: T') ||
209
+ title.startsWith('Task complete: T') ||
210
+ title.startsWith('Task depended on') ||
211
+ title.startsWith('Task T') // catch "Task T527 depended on..." etc.
212
+ ) {
213
+ obsIdsToDelete.push(obs.id);
214
+ continue;
215
+ }
216
+
217
+ // Rule 4b: Session notes (all are noise — real handoffs are in sticky notes)
218
+ if (title.startsWith('Session note:')) {
219
+ obsIdsToDelete.push(obs.id);
220
+ continue;
221
+ }
222
+
223
+ // Rule 4c: Test/audit/probe/junk observations
224
+ const testKeywords = [
225
+ 'audit test',
226
+ 'audit probe',
227
+ 'probe observation',
228
+ 'dup test',
229
+ 'provider test',
230
+ 'brain regression',
231
+ 'brain validation',
232
+ 'release test',
233
+ 'functional validation',
234
+ 'test title',
235
+ 'test decision',
236
+ 'test learning',
237
+ 'test pattern',
238
+ 'test observation',
239
+ 'sticky note', // audit test sticky note
240
+ ];
241
+
242
+ const isTestNoise = testKeywords.some(
243
+ (kw) => titleLower.includes(kw) || narrative.includes(kw),
244
+ );
245
+
246
+ if (isTestNoise) {
247
+ obsIdsToDelete.push(obs.id);
248
+ }
249
+
250
+ // Rule 4d: Auto-detection codebase map noise (keep real ones, delete duplicates)
251
+ // "Codebase Stack Analysis" and "Codebase Integrations" — keep one of each,
252
+ // but the task asks us to keep ~27 so we apply conservative rules.
253
+ // Only delete if title exactly matches auto-generated repeated patterns.
254
+ }
255
+
256
+ let observationsDeleted = 0;
257
+ if (obsIdsToDelete.length > 0) {
258
+ const BATCH = 500;
259
+ for (let i = 0; i < obsIdsToDelete.length; i += BATCH) {
260
+ const batch = obsIdsToDelete.slice(i, i + BATCH);
261
+ await db.delete(brainObservations).where(inArray(brainObservations.id, batch));
262
+ observationsDeleted += batch.length;
263
+ }
264
+ }
265
+
266
+ console.log(`Observations deleted: ${observationsDeleted}`);
267
+
268
+ // =========================================================================
269
+ // Post-purge counts
270
+ // =========================================================================
271
+
272
+ const afterPatterns = countRowsNative('brain_patterns');
273
+ const afterLearnings = countRowsNative('brain_learnings');
274
+ const afterDecisions = countRowsNative('brain_decisions');
275
+ const afterObservations = countRowsNative('brain_observations');
276
+
277
+ console.log('\nPost-purge counts:');
278
+ console.log(` Patterns: ${afterPatterns} (deleted ${beforePatterns - afterPatterns})`);
279
+ console.log(` Learnings: ${afterLearnings} (deleted ${beforeLearnings - afterLearnings})`);
280
+ console.log(` Decisions: ${afterDecisions} (deleted ${beforeDecisions - afterDecisions})`);
281
+ console.log(
282
+ ` Observations: ${afterObservations} (deleted ${beforeObservations - afterObservations})`,
283
+ );
284
+
285
+ // =========================================================================
286
+ // Rebuild FTS5 indexes after bulk deletes
287
+ // =========================================================================
288
+
289
+ let fts5Rebuilt = false;
290
+ const nativeDb = getBrainNativeDb();
291
+ if (nativeDb) {
292
+ ensureFts5Tables(nativeDb);
293
+ try {
294
+ rebuildFts5Index(nativeDb);
295
+ fts5Rebuilt = true;
296
+ console.log('FTS5 indexes rebuilt successfully');
297
+ } catch (err) {
298
+ console.warn('FTS5 rebuild failed (non-fatal):', err);
299
+ }
300
+ }
301
+
302
+ return {
303
+ patternsDeleted: beforePatterns - afterPatterns,
304
+ learningsDeleted: beforeLearnings - afterLearnings,
305
+ decisionsDeleted: beforeDecisions - afterDecisions,
306
+ observationsDeleted: beforeObservations - afterObservations,
307
+ after: {
308
+ patterns: afterPatterns,
309
+ learnings: afterLearnings,
310
+ decisions: afterDecisions,
311
+ observations: afterObservations,
312
+ },
313
+ fts5Rebuilt,
314
+ };
315
+ }